Query 034848
Match_columns 81
No_of_seqs 130 out of 774
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:19:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b6x_A AVRRPS4, avirulence pro 86.5 2.1 7.1E-05 25.0 5.1 47 34-80 33-82 (90)
2 2ld7_A Histone deacetylase com 54.0 17 0.00059 21.3 3.6 55 10-67 25-80 (94)
3 1vyk_A Oxygen-evolving enhance 40.7 66 0.0023 20.2 8.6 67 10-76 76-148 (149)
4 2ke4_A CDC42-interacting prote 40.6 52 0.0018 19.2 4.2 69 7-75 8-77 (98)
5 1z7l_A Ubiquitin-activating en 32.9 44 0.0015 22.9 3.5 48 27-75 19-79 (276)
6 1zv1_A Doublesex protein; UBA 29.9 55 0.0019 17.9 2.9 26 53-78 39-64 (65)
7 1xl3_C Protein type A, secreti 26.8 1E+02 0.0034 18.0 4.8 16 17-32 42-57 (92)
8 3ff5_A PEX14P, peroxisomal bio 24.7 44 0.0015 17.6 1.8 20 43-63 33-52 (54)
9 2w84_A Peroxisomal membrane pr 23.9 69 0.0023 17.8 2.6 21 43-64 38-58 (70)
10 3sl9_C B-cell CLL/lymphoma 9 p 23.5 88 0.003 16.2 3.5 25 3-27 8-32 (55)
11 3sm4_A Exonuclease; homologous 22.0 1.4E+02 0.0047 19.5 4.3 28 53-80 194-221 (229)
12 1ofc_X ISWI protein; nuclear p 21.6 2.1E+02 0.0073 19.9 6.6 47 30-76 140-186 (304)
13 1u6h_B Talin; protein-protein 21.3 66 0.0022 15.0 1.9 25 54-78 1-25 (31)
14 3umh_A Amyloid beta A4 protein 20.9 1.9E+02 0.0066 19.2 5.5 66 13-78 101-175 (211)
No 1
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=86.53 E-value=2.1 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHH---HHHHHHHHHHHHHHHHHHHhcC
Q 034848 34 ARDELKQTIRQEMDKHRDCKDRQKI---RYLISEGLERLKGLDEMLDMQG 80 (81)
Q Consensus 34 ~r~~~~~~iR~eF~~nr~~tD~~~I---~~ll~~g~~~l~~~~~~~~~~~ 80 (81)
+.+.++..+++|.....++.+|..| +.+|++++.+|..+.+.+..-|
T Consensus 33 DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g 82 (90)
T 4b6x_A 33 DKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLR 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556778899999999999999877 5789999999999998876543
No 2
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=53.96 E-value=17 Score=21.33 Aligned_cols=55 Identities=9% Similarity=0.267 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHHHHHhhcCCh-hhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 034848 10 FIVRGRVLKLYRKALRTANRAPP-HARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLE 67 (81)
Q Consensus 10 f~~r~~VL~LYR~~LR~~~~~~~-~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~ 67 (81)
.-+...+|.=|++..+. ..|+ ..++.+..-|+.-|.. ..+...+.|...|-..+.
T Consensus 25 ~kL~~~tLrrY~r~y~L--~~~~~~sK~qLa~aV~kHF~s-~~VdE~evI~~Fly~VK~ 80 (94)
T 2ld7_A 25 YQLQVNTLRRYKRHFKL--PTRPGLNKAQLVEIVGCHFKS-IPVNEKDTLTCFIYSVRN 80 (94)
T ss_dssp SSSCHHHHHHHHHHTTC--CCCSSCCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHhCC--CCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHh
Confidence 34456889999999877 4444 5799999999999976 557767888887766553
No 3
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=40.74 E-value=66 Score=20.22 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHH------hhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034848 10 FIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMD------KHRDCKDRQKIRYLISEGLERLKGLDEML 76 (81)
Q Consensus 10 f~~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~------~nr~~tD~~~I~~ll~~g~~~l~~~~~~~ 76 (81)
...|..+=-|+..+...+...|...|..+..-.+.-|. .-....|....+..+.++...|..+-..+
T Consensus 76 n~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l 148 (149)
T 1vyk_A 76 NDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888899999999999998777777777777663 33445688888889888888887765543
No 4
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=40.58 E-value=52 Score=19.21 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=46.8
Q ss_pred hhhHhhHHHHHHHHHHHHHHhhcCChhh-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034848 7 LQDFIVRGRVLKLYRKALRTANRAPPHA-RDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEM 75 (81)
Q Consensus 7 l~~f~~r~~VL~LYR~~LR~~~~~~~~~-r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~ 75 (81)
+.|.+.-++.-+|=+.+-+.-..+.... -...+.....-|.+|-...||..++..|.+....|+.++..
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLE 77 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445455555555555555555554322 23456888999999999999998888888887777776644
No 5
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=32.94 E-value=44 Score=22.94 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=29.2
Q ss_pred hhcCChhhHHHHHHHHHHHHHh---------hcCCCCHHHHHHHHHHH----HHHHHHHHHH
Q 034848 27 ANRAPPHARDELKQTIRQEMDK---------HRDCKDRQKIRYLISEG----LERLKGLDEM 75 (81)
Q Consensus 27 ~~~~~~~~r~~~~~~iR~eF~~---------nr~~tD~~~I~~ll~~g----~~~l~~~~~~ 75 (81)
.+.+|. .-..-+.|+|+.|+. |..++||+.++.+...+ ...|+.+...
T Consensus 19 lrsfP~-~i~HcI~WAr~lFe~lF~~~~~~~n~~l~dp~~~~~~~~~~~~~~~~~l~~i~~~ 79 (276)
T 1z7l_A 19 LKNFPN-AIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRS 79 (276)
T ss_dssp HHTCCC-SHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSHHHHHHHTSSTTHHHHHHHHHHHH
T ss_pred cCCCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHhhcChHHHHHHHhccchhhHHHHHHHHHH
Confidence 455563 355677888888854 45567887777776543 2345555543
No 6
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=29.94 E-value=55 Score=17.89 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 034848 53 KDRQKIRYLISEGLERLKGLDEMLDM 78 (81)
Q Consensus 53 tD~~~I~~ll~~g~~~l~~~~~~~~~ 78 (81)
.|+++....|.+|+.-..++.+..++
T Consensus 39 ~d~eeAsrrI~Eg~~~v~~ysr~hnl 64 (65)
T 1zv1_A 39 ANIEEASRRIEEGQYVVNEYSRQHNL 64 (65)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58899999999999999999887654
No 7
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=26.81 E-value=1e+02 Score=18.00 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhcCCh
Q 034848 17 LKLYRKALRTANRAPP 32 (81)
Q Consensus 17 L~LYR~~LR~~~~~~~ 32 (81)
+.+||.+++..|.+|.
T Consensus 42 I~Flqel~~l~R~iP~ 57 (92)
T 1xl3_C 42 VRFYQDLXRMFRLFPL 57 (92)
T ss_dssp HHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCH
Confidence 4567777777777763
No 8
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.69 E-value=44 Score=17.60 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=10.8
Q ss_pred HHHHHhhcCCCCHHHHHHHHH
Q 034848 43 RQEMDKHRDCKDRQKIRYLIS 63 (81)
Q Consensus 43 R~eF~~nr~~tD~~~I~~ll~ 63 (81)
|-+|=+.|++|+.+ |+.++.
T Consensus 33 K~~FL~sKGLt~~E-I~~Al~ 52 (54)
T 3ff5_A 33 RRAFLKKKGLTDEE-IDLAFQ 52 (54)
T ss_dssp HHHHHHHTTCCHHH-HHHHHH
T ss_pred HHHHHHHcCCCHHH-HHHHHH
Confidence 44566666666443 555443
No 9
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=23.88 E-value=69 Score=17.78 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=11.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHH
Q 034848 43 RQEMDKHRDCKDRQKIRYLISE 64 (81)
Q Consensus 43 R~eF~~nr~~tD~~~I~~ll~~ 64 (81)
|.+|=+.|++|+.+ |+.++.+
T Consensus 38 K~~FL~sKGLt~eE-I~~Al~r 58 (70)
T 2w84_A 38 RRAFLKKKGLTDEE-IDMAFQQ 58 (70)
T ss_dssp HHHHHHHTTCCHHH-HHHHHHH
T ss_pred HHHHHHHcCCCHHH-HHHHHHH
Confidence 44555666666433 5555544
No 10
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=23.50 E-value=88 Score=16.22 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.9
Q ss_pred CCCChhhHhhHHHHHHHHHHHHHHh
Q 034848 3 LPFDLQDFIVRGRVLKLYRKALRTA 27 (81)
Q Consensus 3 ~~~sl~~f~~r~~VL~LYR~~LR~~ 27 (81)
..||-++...|.+.|.-.|.+-|..
T Consensus 8 ~gls~eqlehrerslqtlrdi~r~~ 32 (55)
T 3sl9_C 8 DGLSQEQLEHRERSLQTLRDIQRML 32 (55)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999998875
No 11
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=22.04 E-value=1.4e+02 Score=19.54 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034848 53 KDRQKIRYLISEGLERLKGLDEMLDMQG 80 (81)
Q Consensus 53 tD~~~I~~ll~~g~~~l~~~~~~~~~~~ 80 (81)
-|++.|+.++......++.+.+.++.-|
T Consensus 194 RD~~~i~~l~~~~~~Fw~~v~~~~~~~~ 221 (229)
T 3sm4_A 194 RDEKYMASFDEIVPEFIEKMDEALAEIG 221 (229)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4999999999999999999999887654
No 12
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=21.58 E-value=2.1e+02 Score=19.94 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=37.3
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034848 30 APPHARDELKQTIRQEMDKHRDCKDRQKIRYLISEGLERLKGLDEML 76 (81)
Q Consensus 30 ~~~~~r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g~~~l~~~~~~~ 76 (81)
+++.+-+.+..+...=++....+.|-+.|-.-|+.|+..+..++...
T Consensus 140 v~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~ 186 (304)
T 1ofc_X 140 VEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIK 186 (304)
T ss_dssp STTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34434667777777777888889999999999999999987766553
No 13
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=21.27 E-value=66 Score=14.96 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q 034848 54 DRQKIRYLISEGLERLKGLDEMLDM 78 (81)
Q Consensus 54 D~~~I~~ll~~g~~~l~~~~~~~~~ 78 (81)
||+.-+.||..++.-.+-..+++.-
T Consensus 1 D~~~q~rLl~aak~vaeata~mVea 25 (31)
T 1u6h_B 1 DLENSRKLLSAAKILADATAKMVEA 25 (31)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677888777777777777654
No 14
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=20.85 E-value=1.9e+02 Score=19.22 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH-------HHhhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Q 034848 13 RGRVLKLYRKALRTANRAPPHARDELKQTIRQE-------MDKHRDC--KDRQKIRYLISEGLERLKGLDEMLDM 78 (81)
Q Consensus 13 r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~e-------F~~nr~~--tD~~~I~~ll~~g~~~l~~~~~~~~~ 78 (81)
|+.++..|...|.....-|..--..+..+||.+ .+-.+|+ +||++....-......|..+.+.++-
T Consensus 101 rr~Ale~y~~ALq~~pp~~~~il~aLk~yirae~KDR~Hti~hy~Hv~~~dpe~A~~~k~~v~~hL~~id~r~Nq 175 (211)
T 3umh_A 101 RRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ 175 (211)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCHHHHHhcchHHHHHHHHHHHHHhH
Confidence 456667777777433222211123334445442 2223333 58988877777777777777666553
Done!