Query 034854
Match_columns 81
No_of_seqs 130 out of 774
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 11:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034854.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034854hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba1 a.60.2.4 (A:351-409) T 43.3 5.6 0.00041 19.7 1.5 39 40-78 18-58 (59)
2 d2o8ra4 d.136.1.4 (A:506-691) 26.5 51 0.0037 20.0 4.4 37 31-67 6-54 (186)
3 d1xl3c1 a.243.1.1 (C:2-92) Tye 26.1 48 0.0035 17.9 4.8 28 17-44 41-74 (91)
4 d1xdpa4 d.136.1.4 (A:502-688) 24.7 54 0.0039 19.9 4.2 37 31-67 6-54 (187)
5 d2bcgg2 c.3.1.3 (G:400-446) Gu 24.1 21 0.0015 17.2 1.7 17 8-24 20-37 (47)
6 d1nzea_ a.24.18.1 (A:) Oxygen- 23.5 57 0.0041 17.8 6.3 65 9-73 38-108 (112)
7 d1a6fa_ d.14.1.2 (A:) RNase P 20.6 41 0.003 18.0 2.8 19 33-51 57-75 (113)
8 d1ef1a1 a.11.2.1 (A:88-198) Mo 20.3 58 0.0043 17.1 3.5 31 35-65 78-108 (111)
9 d1lvfa_ a.47.2.1 (A:) Syntaxin 20.1 65 0.0047 17.2 7.0 21 57-77 84-104 (106)
10 d1nz0a_ d.14.1.2 (A:) RNase P 18.2 43 0.0031 17.8 2.5 20 33-52 50-69 (109)
No 1
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=43.33 E-value=5.6 Score=19.67 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 034854 40 QTIRQEMDKHRD--CKDRQKIRYLISEGLERLKGLDEMLDM 78 (81)
Q Consensus 40 ~~iR~eF~~nr~--~tD~~~I~~ll~~g~~~l~~~~~~~~~ 78 (81)
..+-..|+.-.. .||.++|+.+.++|+-.-+.++.-+..
T Consensus 18 deliehfesiagilatdleeiermyeegrlseeayraavei 58 (59)
T d2csba1 18 DELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEI 58 (59)
T ss_dssp HHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHcccccHHHHHHHhhc
Confidence 444566776655 489999999999998777777766554
No 2
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=26.54 E-value=51 Score=19.98 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=27.7
Q ss_pred ChhhHHHHHHHHHHHHHhhc------------CCCCHHHHHHHHHHHHH
Q 034854 31 PPHARDELKQTIRQEMDKHR------------DCKDRQKIRYLISEGLE 67 (81)
Q Consensus 31 ~~~~r~~~~~~iR~eF~~nr------------~~tD~~~I~~ll~~g~~ 67 (81)
|...|+.+...|..|-...+ +++|++-|+.|.+.+++
T Consensus 6 P~~lr~~l~~~I~~Ei~~a~~G~~~~I~~KmNsL~D~~iI~~Ly~AS~a 54 (186)
T d2o8ra4 6 RYNMGEAITNLIEREIENVKRGKRGYMLLKMNGLQDKNVITQLYRASEA 54 (186)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCCCEEEEEESCBCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHCCCCcEEEEeeccccCHHHHHHHHHHhcC
Confidence 33457788888888876432 57899999999987764
No 3
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=26.08 E-value=48 Score=17.91 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhcCCh------hhHHHHHHHHHH
Q 034854 17 LKLYRKALRTANRAPP------HARDELKQTIRQ 44 (81)
Q Consensus 17 L~LYR~~LR~~~~~~~------~~r~~~~~~iR~ 44 (81)
+.+|+.+.+..|.+|. ..|+.+...+.+
T Consensus 41 I~F~~El~~l~R~iP~~~f~d~e~R~~lL~a~Q~ 74 (91)
T d1xl3c1 41 VRFYQDLKRMFRLFPLGVFSDEEQRQNLLQMCQN 74 (91)
T ss_dssp HHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHH
Confidence 4578888888888874 135555555443
No 4
>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=24.72 E-value=54 Score=19.88 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=27.1
Q ss_pred ChhhHHHHHHHHHHHHHhhc------------CCCCHHHHHHHHHHHHH
Q 034854 31 PPHARDELKQTIRQEMDKHR------------DCKDRQKIRYLISEGLE 67 (81)
Q Consensus 31 ~~~~r~~~~~~iR~eF~~nr------------~~tD~~~I~~ll~~g~~ 67 (81)
|...|+.+...|..|-...+ +++|++-|+.|.+.+++
T Consensus 6 P~~lr~~l~~~I~~Ei~~a~~G~~a~I~~K~NsL~D~~~I~~Ly~AS~a 54 (187)
T d1xdpa4 6 PQNSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSS 54 (187)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeccCcCHHHHHHHHHHHcC
Confidence 33457778888888875332 46899999999987764
No 5
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.10 E-value=21 Score=17.16 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.1
Q ss_pred hhHhhH-HHHHHHHHHHH
Q 034854 8 QDFIVR-GRVLKLYRKAL 24 (81)
Q Consensus 8 ~~f~~r-~~VL~LYR~~L 24 (81)
.||..- ..|+.+|+++-
T Consensus 20 sHFEtt~~Dv~diY~rit 37 (47)
T d2bcgg2 20 SHFESMTDDVKDIYFRVT 37 (47)
T ss_dssp SBSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhh
Confidence 367665 78999999874
No 6
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=23.52 E-value=57 Score=17.83 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=46.4
Q ss_pred hHhhHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHH
Q 034854 9 DFIVRGRVLKLYRKALRTANRAPPHARDELKQTIRQEMDKHR------DCKDRQKIRYLISEGLERLKGLD 73 (81)
Q Consensus 9 ~f~~r~~VL~LYR~~LR~~~~~~~~~r~~~~~~iR~eF~~nr------~~tD~~~I~~ll~~g~~~l~~~~ 73 (81)
.+.+|..+=-|+..+...+...|+..+.....-.+.-|..=- ...|....+....++...|+.+-
T Consensus 38 ~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~LD~Aar~kd~~~a~~~Y~~t~~~ld~~l 108 (112)
T d1nzea_ 38 QNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVL 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 345677777899999999999998777777666666664332 34577778888877777766553
No 7
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=20.62 E-value=41 Score=17.99 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHhhcC
Q 034854 33 HARDELKQTIRQEMDKHRD 51 (81)
Q Consensus 33 ~~r~~~~~~iR~eF~~nr~ 51 (81)
..|..+.+.+|+-|+.+.+
T Consensus 57 V~RNriKR~lRe~~r~~~~ 75 (113)
T d1a6fa_ 57 VMRNRIKRLIRQAFLEEKE 75 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3588888888888887765
No 8
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.32 E-value=58 Score=17.14 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 034854 35 RDELKQTIRQEMDKHRDCKDRQKIRYLISEG 65 (81)
Q Consensus 35 r~~~~~~iR~eF~~nr~~tD~~~I~~ll~~g 65 (81)
...+...|...+++.++.|..+..-..|..+
T Consensus 78 ~~~~~~~I~~~h~~l~g~s~~~A~~~fL~~~ 108 (111)
T d1ef1a1 78 KDQWEERIQVWHEEHRGMLREDAVLEYLKIA 108 (111)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 4678899999999999999877766666554
No 9
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.08 E-value=65 Score=17.23 Aligned_cols=21 Identities=5% Similarity=0.202 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034854 57 KIRYLISEGLERLKGLDEMLD 77 (81)
Q Consensus 57 ~I~~ll~~g~~~l~~~~~~~~ 77 (81)
.-+..+...+.++..++..+.
T Consensus 84 ~Rr~fi~~~~~~I~~~~~~l~ 104 (106)
T d1lvfa_ 84 IRKAFITSTRQIVRDMKDQMS 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777766654
No 10
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=18.17 E-value=43 Score=17.80 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHhhcCC
Q 034854 33 HARDELKQTIRQEMDKHRDC 52 (81)
Q Consensus 33 ~~r~~~~~~iR~eF~~nr~~ 52 (81)
..|..+.+.+|+-|+.+.+.
T Consensus 50 V~RNriKR~lRe~~r~~~~~ 69 (109)
T d1nz0a_ 50 TRRNKLKRWVREIFRRNKGV 69 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35888899999999888754
Done!