BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034861
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein
1 (Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein
1 (Chp1)
Length = 208
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 1 MGT-ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFA 59
MG+ AS++L ++EE+++ FS +I LY RF LD+ G +S ++F +PE A
Sbjct: 1 MGSRASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELA 58
Query: 60 MNPLSQVV 67
+NPL +
Sbjct: 59 INPLGDRI 66
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 1 MGT-ASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFA 59
MG+ AS++L ++EE+++ FS +I LY RF LD+ G +S ++F +PE A
Sbjct: 1 MGSRASTLLRDEELEEIKKETG--FSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELA 58
Query: 60 MNPLSQVV 67
+NPL +
Sbjct: 59 INPLGDRI 66
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 24 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVV 67
F EI L +RF +LD + G +S +EF+S+PE NPL Q V
Sbjct: 15 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 58
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 24 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVV 67
F EI L +RF +LD + G +S +EF+S+PE NPL Q V
Sbjct: 14 FDADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 57
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 24 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQN 70
FSQ ++ L+ RF LDRN KG++S + + A+NPL + ++
Sbjct: 23 FSQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIES 69
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 28 EIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVV 67
EI L +RF +LD + G +S +EF+S+PE NPL Q V
Sbjct: 5 EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 44
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 28 EIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVV 67
EI L +RF +LD + G +S +EF+S+PE NPL Q V
Sbjct: 4 EIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 43
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL----DRNAKGFISA----DEF 52
MG + S L++ + E Q ++QEI+ ++RFC+L R+ + + A ++
Sbjct: 24 MGGSGSRLSKELLAEYQDL--TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQI 81
Query: 53 LSVPEFAMNPLSQVV 67
LS+PE NP + +
Sbjct: 82 LSLPELKANPFKERI 96
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib
(Calcium-And Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding
Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding
Protein
Length = 183
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 24 FSQQEIVSLYQRFCQL----DRNAKGFISA----DEFLSVPEFAMNPLSQVV 67
++QEI+ ++RFC+L R+ + + A ++ LS+PE NP + +
Sbjct: 14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERI 65
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55
S++E+ L++ F DRNA G+I A+E +
Sbjct: 91 SEEELAELFRIF---DRNADGYIDAEELAEI 118
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQ-LDRNAKGFISADEFLSV 55
M + YD+ + +H + + + + +RF Q +DRN G ++ DEFL
Sbjct: 191 MKSIYDM--MGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLET 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,099,129
Number of Sequences: 62578
Number of extensions: 61384
Number of successful extensions: 316
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 16
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)