Query 034861
Match_columns 81
No_of_seqs 101 out of 576
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0038 Ca2+-binding kinase in 99.7 2.4E-18 5.1E-23 115.6 5.2 71 1-73 1-82 (189)
2 KOG0034 Ca2+/calmodulin-depend 99.6 5.7E-16 1.2E-20 106.5 5.1 72 1-74 1-78 (187)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.4 7.1E-13 1.5E-17 91.6 5.9 69 1-73 1-75 (193)
4 COG5126 FRQ1 Ca2+-binding prot 98.5 1.2E-07 2.5E-12 64.1 4.6 52 22-73 12-67 (160)
5 smart00027 EH Eps15 homology d 97.0 0.0015 3.2E-08 39.7 4.1 50 23-72 3-54 (96)
6 PF13499 EF-hand_7: EF-hand do 96.9 0.002 4.4E-08 36.0 3.8 48 7-54 16-64 (66)
7 PLN02964 phosphatidylserine de 96.8 0.0013 2.7E-08 52.7 3.4 66 6-72 119-189 (644)
8 PTZ00184 calmodulin; Provision 96.7 0.0032 7E-08 39.4 4.1 51 22-72 3-57 (149)
9 PF00036 EF-hand_1: EF hand; 96.6 0.0012 2.7E-08 32.5 1.5 23 33-55 3-25 (29)
10 PF13499 EF-hand_7: EF-hand do 96.6 0.0022 4.7E-08 35.9 2.6 27 31-57 1-27 (66)
11 PF13405 EF-hand_6: EF-hand do 96.6 0.0014 3E-08 32.2 1.6 25 31-55 1-25 (31)
12 PF13202 EF-hand_5: EF hand; P 96.6 0.0016 3.4E-08 31.1 1.5 22 34-55 3-24 (25)
13 cd00213 S-100 S-100: S-100 dom 96.4 0.0049 1.1E-07 36.5 3.4 47 26-72 4-61 (88)
14 PTZ00183 centrin; Provisional 96.3 0.0093 2E-07 37.9 4.7 34 22-55 9-42 (158)
15 cd00052 EH Eps15 homology doma 96.1 0.025 5.3E-07 31.1 5.0 45 6-55 14-58 (67)
16 smart00027 EH Eps15 homology d 95.9 0.025 5.5E-07 34.2 5.0 46 5-55 24-69 (96)
17 cd00252 SPARC_EC SPARC_EC; ext 95.7 0.019 4.1E-07 36.7 3.9 48 25-72 43-90 (116)
18 PF13833 EF-hand_8: EF-hand do 95.7 0.023 5E-07 30.6 3.7 46 7-55 4-50 (54)
19 cd05029 S-100A6 S-100A6: S-100 95.6 0.025 5.4E-07 34.3 4.0 45 7-55 28-76 (88)
20 cd00052 EH Eps15 homology doma 95.5 0.016 3.4E-07 32.0 2.5 39 34-72 3-43 (67)
21 KOG0037 Ca2+-binding protein, 94.9 0.11 2.5E-06 36.8 6.1 45 29-73 123-171 (221)
22 cd00051 EFh EF-hand, calcium b 94.9 0.17 3.7E-06 26.1 5.5 45 7-54 16-60 (63)
23 cd05026 S-100Z S-100Z: S-100Z 94.8 0.086 1.9E-06 32.0 4.6 45 7-55 28-78 (93)
24 cd05022 S-100A13 S-100A13: S-1 94.8 0.063 1.4E-06 32.8 4.0 47 6-55 24-72 (89)
25 cd05023 S-100A11 S-100A11: S-1 94.7 0.064 1.4E-06 32.5 3.8 46 7-55 27-77 (89)
26 KOG0041 Predicted Ca2+-binding 94.5 0.021 4.5E-07 40.6 1.6 36 22-57 91-126 (244)
27 cd05031 S-100A10_like S-100A10 94.4 0.12 2.5E-06 31.1 4.5 46 6-55 25-76 (94)
28 cd05030 calgranulins Calgranul 94.0 0.16 3.4E-06 30.5 4.5 47 6-55 25-76 (88)
29 cd00252 SPARC_EC SPARC_EC; ext 93.8 0.2 4.3E-06 32.0 5.0 45 5-56 62-106 (116)
30 cd05027 S-100B S-100B: S-100B 93.8 0.19 4.2E-06 30.3 4.6 46 7-55 26-76 (88)
31 PTZ00183 centrin; Provisional 93.7 0.53 1.1E-05 29.6 6.8 45 7-54 33-77 (158)
32 KOG0027 Calmodulin and related 93.6 0.18 3.9E-06 32.7 4.5 42 25-66 3-45 (151)
33 cd05022 S-100A13 S-100A13: S-1 93.5 0.17 3.7E-06 30.8 4.0 45 28-72 6-57 (89)
34 cd00213 S-100 S-100: S-100 dom 93.3 0.36 7.9E-06 28.3 5.3 48 5-55 24-76 (88)
35 PF11569 Homez: Homeodomain le 93.1 0.12 2.7E-06 29.4 2.7 28 7-36 22-49 (56)
36 cd05025 S-100A1 S-100A1: S-100 93.0 0.31 6.7E-06 29.1 4.6 46 7-55 27-77 (92)
37 PTZ00184 calmodulin; Provision 92.7 0.33 7.1E-06 30.1 4.7 64 7-72 63-130 (149)
38 smart00054 EFh EF-hand, calciu 92.5 0.11 2.4E-06 22.8 1.7 22 34-55 4-25 (29)
39 cd05025 S-100A1 S-100A1: S-100 92.4 0.12 2.6E-06 30.9 2.2 44 29-72 8-62 (92)
40 PF05920 Homeobox_KN: Homeobox 92.1 0.21 4.6E-06 26.3 2.7 27 7-35 10-36 (40)
41 cd05031 S-100A10_like S-100A10 92.0 0.2 4.3E-06 30.1 2.9 44 29-72 7-61 (94)
42 cd00051 EFh EF-hand, calcium b 91.1 0.19 4E-06 26.0 1.9 41 32-72 2-46 (63)
43 cd00086 homeodomain Homeodomai 91.1 0.49 1.1E-05 25.4 3.6 28 7-36 24-51 (59)
44 KOG0031 Myosin regulatory ligh 90.9 0.31 6.7E-06 33.3 3.2 33 23-55 25-57 (171)
45 PF14513 DAG_kinase_N: Diacylg 90.8 0.31 6.8E-06 32.2 3.1 64 6-73 6-80 (138)
46 cd05023 S-100A11 S-100A11: S-1 90.7 0.29 6.3E-06 29.6 2.7 46 27-72 6-62 (89)
47 cd05024 S-100A10 S-100A10: A s 88.5 0.68 1.5E-05 28.6 3.1 43 7-55 23-73 (91)
48 smart00389 HOX Homeodomain. DN 88.3 1 2.3E-05 23.9 3.5 27 7-35 24-50 (56)
49 cd05030 calgranulins Calgranul 88.2 0.65 1.4E-05 27.8 2.9 46 27-72 5-61 (88)
50 PF14658 EF-hand_9: EF-hand do 88.1 1.6 3.6E-05 25.5 4.4 40 13-56 21-62 (66)
51 PF12763 EF-hand_4: Cytoskelet 87.7 1.4 3E-05 27.6 4.3 44 6-54 24-67 (104)
52 cd05027 S-100B S-100B: S-100B 87.4 0.69 1.5E-05 27.9 2.6 28 28-55 6-35 (88)
53 KOG0027 Calmodulin and related 85.9 0.72 1.6E-05 29.8 2.3 27 29-55 84-110 (151)
54 cd05026 S-100Z S-100Z: S-100Z 84.9 1 2.2E-05 27.2 2.5 44 29-72 9-63 (93)
55 PF00046 Homeobox: Homeobox do 84.5 2.4 5.2E-05 22.8 3.7 27 7-35 24-50 (57)
56 KOG2562 Protein phosphatase 2 84.3 2.1 4.6E-05 33.7 4.5 48 22-69 270-318 (493)
57 PF08414 NADPH_Ox: Respiratory 84.0 1.1 2.4E-05 28.3 2.4 56 12-72 15-71 (100)
58 KOG4223 Reticulocalbin, calume 83.5 1.9 4.2E-05 32.3 3.9 41 25-67 158-200 (325)
59 PF14788 EF-hand_10: EF hand; 83.3 1 2.2E-05 25.1 1.9 43 9-54 3-45 (51)
60 PLN02964 phosphatidylserine de 83.0 2.9 6.3E-05 33.9 5.0 46 7-55 195-240 (644)
61 PTZ00100 DnaJ chaperone protei 81.6 11 0.00023 24.3 6.3 54 7-75 61-115 (116)
62 cd04790 HTH_Cfa-like_unk Helix 80.8 3.4 7.3E-05 27.8 4.1 35 7-43 115-149 (172)
63 PF13720 Acetyltransf_11: Udp 80.7 3.5 7.5E-05 24.7 3.7 50 16-71 23-74 (83)
64 KOG0044 Ca2+ sensor (EF-Hand s 80.6 1 2.2E-05 31.3 1.5 30 24-55 96-125 (193)
65 cd05029 S-100A6 S-100A6: S-100 79.8 4.6 0.0001 24.2 4.0 30 27-56 7-38 (88)
66 KOG0034 Ca2+/calmodulin-depend 79.2 3.4 7.3E-05 28.5 3.7 25 31-55 105-129 (187)
67 KOG0046 Ca2+-binding actin-bun 79.1 2.2 4.8E-05 34.2 3.0 33 22-55 11-43 (627)
68 PRK12309 transaldolase/EF-hand 77.2 2.9 6.2E-05 31.9 3.1 22 32-53 336-357 (391)
69 PRK12309 transaldolase/EF-hand 75.3 3.8 8.3E-05 31.2 3.3 33 23-55 350-382 (391)
70 PF04433 SWIRM: SWIRM domain; 74.9 6.5 0.00014 23.2 3.7 69 7-81 14-85 (86)
71 PF10591 SPARC_Ca_bdg: Secrete 74.8 4.7 0.0001 25.4 3.2 33 25-57 49-81 (113)
72 KOG0037 Ca2+-binding protein, 74.1 3.7 8.1E-05 29.2 2.8 43 29-71 56-99 (221)
73 KOG0028 Ca2+-binding protein ( 73.1 4.5 9.8E-05 27.8 2.9 28 25-55 104-131 (172)
74 PRK12461 UDP-N-acetylglucosami 68.5 9.5 0.0002 27.2 3.9 50 16-71 195-246 (255)
75 KOG4251 Calcium binding protei 67.5 5.1 0.00011 29.6 2.4 31 23-53 117-163 (362)
76 COG5126 FRQ1 Ca2+-binding prot 67.5 35 0.00076 23.0 6.3 65 7-72 13-99 (160)
77 PF05280 FlhC: Flagellar trans 67.2 6.5 0.00014 26.8 2.7 32 16-50 29-60 (175)
78 PF13986 DUF4224: Domain of un 67.2 6.5 0.00014 21.2 2.2 36 7-45 2-37 (47)
79 PRK04387 hypothetical protein; 66.8 12 0.00026 23.2 3.6 21 23-43 33-53 (90)
80 PF00627 UBA: UBA/TS-N domain; 65.5 12 0.00027 18.6 3.0 26 9-37 2-27 (37)
81 PRK12722 transcriptional activ 64.9 11 0.00024 26.2 3.5 34 13-49 26-59 (187)
82 KOG2562 Protein phosphatase 2 64.8 17 0.00038 28.7 4.9 65 7-74 294-405 (493)
83 PTZ00037 DnaJ_C chaperone prot 64.0 9.7 0.00021 29.2 3.4 47 23-71 39-89 (421)
84 PF12174 RST: RCD1-SRO-TAF4 (R 63.5 7.2 0.00016 22.8 2.1 29 23-54 21-49 (70)
85 PF13373 DUF2407_C: DUF2407 C- 61.4 11 0.00024 24.9 2.9 25 14-41 4-28 (140)
86 PRK14102 nifW nitrogenase stab 60.0 26 0.00056 22.2 4.3 15 58-72 76-90 (105)
87 cd00194 UBA Ubiquitin Associat 60.0 20 0.00043 17.6 3.4 26 10-38 2-27 (38)
88 PF01023 S_100: S-100/ICaBP ty 58.5 10 0.00022 20.1 2.0 27 28-55 7-33 (44)
89 PRK00810 nifW nitrogenase stab 56.9 30 0.00064 22.2 4.2 16 58-73 78-93 (113)
90 smart00165 UBA Ubiquitin assoc 56.7 23 0.0005 17.2 3.4 24 10-36 2-25 (37)
91 PF13708 Methyltransf_27: Meth 55.9 12 0.00027 25.5 2.5 54 22-79 22-79 (194)
92 COG1043 LpxA Acyl-[acyl carrie 55.1 17 0.00036 26.6 3.1 50 16-71 200-251 (260)
93 KOG1707 Predicted Ras related/ 53.1 16 0.00036 29.7 3.1 34 22-55 307-340 (625)
94 COG4476 Uncharacterized protei 52.3 33 0.00071 21.2 3.7 21 23-43 33-53 (90)
95 PRK14288 chaperone protein Dna 51.7 21 0.00044 26.8 3.3 48 23-70 14-67 (369)
96 PRK12860 transcriptional activ 51.0 26 0.00057 24.3 3.5 34 13-49 26-59 (189)
97 PF07499 RuvA_C: RuvA, C-termi 50.6 37 0.0008 17.8 4.3 26 10-38 4-29 (47)
98 PF14134 DUF4301: Domain of un 50.4 81 0.0018 25.3 6.5 64 8-74 1-89 (513)
99 PF04546 Sigma70_ner: Sigma-70 50.1 17 0.00036 25.0 2.5 53 7-62 123-176 (211)
100 PF08640 U3_assoc_6: U3 small 49.9 33 0.00072 20.5 3.5 25 11-37 6-30 (83)
101 TIGR02787 codY_Gpos GTP-sensin 49.2 23 0.0005 25.8 3.1 46 23-69 176-221 (251)
102 KOG3956 Alpha 2-macroglobulin 48.9 31 0.00067 25.9 3.8 33 6-39 150-184 (359)
103 PRK10664 transcriptional regul 48.3 21 0.00045 21.5 2.4 51 11-63 5-64 (90)
104 TIGR00135 gatC glutamyl-tRNA(G 48.2 56 0.0012 19.4 4.3 31 9-39 2-32 (93)
105 PRK14561 hypothetical protein; 47.8 13 0.00029 25.2 1.7 32 23-54 133-164 (194)
106 PF12836 HHH_3: Helix-hairpin- 47.0 32 0.0007 19.2 3.0 47 9-61 9-55 (65)
107 KOG0030 Myosin essential light 46.8 15 0.00033 24.7 1.8 41 22-62 3-44 (152)
108 KOG0038 Ca2+-binding kinase in 46.0 52 0.0011 22.6 4.3 33 23-55 141-174 (189)
109 PF09966 DUF2200: Uncharacteri 45.3 35 0.00076 21.9 3.2 33 8-41 23-61 (111)
110 PF09288 UBA_3: Fungal ubiquit 45.1 53 0.0011 18.5 3.6 28 7-37 7-34 (55)
111 PF04963 Sigma54_CBD: Sigma-54 45.0 55 0.0012 22.2 4.4 62 11-74 53-116 (194)
112 KOG3154 Uncharacterized conser 45.0 32 0.00069 25.0 3.2 28 7-38 181-208 (263)
113 PHA03102 Small T antigen; Revi 44.8 39 0.00084 22.6 3.5 23 23-45 16-41 (153)
114 PF09851 SHOCT: Short C-termin 44.5 39 0.00085 16.4 2.7 22 27-54 3-24 (31)
115 PF00226 DnaJ: DnaJ domain; I 44.3 31 0.00066 18.6 2.6 24 23-46 11-35 (64)
116 KOG0488 Transcription factor B 43.8 17 0.00036 26.9 1.8 18 22-39 177-194 (309)
117 PF13758 Prefoldin_3: Prefoldi 43.8 81 0.0018 19.8 4.7 56 10-73 18-75 (99)
118 TIGR01565 homeo_ZF_HD homeobox 43.7 28 0.00061 19.6 2.3 19 22-40 6-24 (58)
119 KOG0031 Myosin regulatory ligh 43.6 67 0.0014 22.1 4.5 44 8-54 118-161 (171)
120 TIGR02395 rpoN_sigma RNA polym 43.2 1.1E+02 0.0024 23.5 6.2 59 11-71 114-176 (429)
121 TIGR02531 yecD_yerC TrpR-relat 43.1 25 0.00054 21.3 2.2 52 7-62 15-66 (88)
122 cd06257 DnaJ DnaJ domain or J- 43.0 29 0.00062 17.9 2.3 23 23-45 11-34 (55)
123 PRK14279 chaperone protein Dna 42.7 24 0.00052 26.7 2.5 49 23-71 20-74 (392)
124 PF12419 DUF3670: SNF2 Helicas 42.5 75 0.0016 20.5 4.6 45 7-54 83-137 (141)
125 PF15533 Toxin_54: Putative to 42.1 52 0.0011 19.2 3.3 26 4-32 4-29 (66)
126 KOG0040 Ca2+-binding actin-bun 41.6 57 0.0012 30.1 4.8 58 16-73 2239-2307(2399)
127 PRK00034 gatC aspartyl/glutamy 41.5 76 0.0016 18.8 4.4 32 8-39 3-34 (95)
128 PF05256 UPF0223: Uncharacteri 41.3 30 0.00065 21.3 2.3 20 23-42 33-52 (88)
129 PF09435 DUF2015: Fungal prote 41.0 1E+02 0.0022 20.2 4.9 39 7-45 81-122 (128)
130 PF04814 HNF-1_N: Hepatocyte n 41.0 14 0.00031 25.6 1.0 30 6-35 3-32 (180)
131 PF09279 EF-hand_like: Phospho 40.7 11 0.00023 21.8 0.3 51 6-56 14-67 (83)
132 KOG4065 Uncharacterized conser 39.7 39 0.00084 22.3 2.8 30 25-54 111-141 (144)
133 PF03206 NifW: Nitrogen fixati 38.9 79 0.0017 19.9 4.1 16 58-73 75-90 (105)
134 KOG4154 Arginine-rich protein 38.2 39 0.00085 22.8 2.7 32 14-46 44-75 (178)
135 PF06648 DUF1160: Protein of u 37.9 65 0.0014 20.9 3.7 32 7-38 50-82 (122)
136 KOG3442 Uncharacterized conser 37.7 80 0.0017 20.8 4.0 39 6-45 54-93 (132)
137 cd07971 OBF_DNA_ligase_LigD Th 37.2 35 0.00075 21.1 2.3 19 22-40 41-59 (115)
138 COG0177 Nth Predicted EndoIII- 37.0 88 0.0019 22.1 4.5 50 7-58 66-117 (211)
139 KOG0142 Isopentenyl pyrophosph 37.0 41 0.0009 24.0 2.8 32 46-78 174-208 (225)
140 KOG0036 Predicted mitochondria 36.9 30 0.00066 27.1 2.3 29 25-54 78-106 (463)
141 COG0484 DnaJ DnaJ-class molecu 36.5 39 0.00084 25.9 2.8 48 24-71 16-69 (371)
142 PRK05289 UDP-N-acetylglucosami 36.4 62 0.0014 22.9 3.7 48 23-72 203-251 (262)
143 smart00796 AHS1 Allophanate hy 36.2 39 0.00084 23.3 2.6 22 12-35 102-123 (201)
144 KOG0028 Ca2+-binding protein ( 35.9 77 0.0017 21.8 3.9 30 23-52 26-55 (172)
145 TIGR00988 hip integration host 35.9 46 0.001 19.7 2.6 44 11-55 5-51 (94)
146 cd01104 HTH_MlrA-CarA Helix-Tu 35.9 75 0.0016 17.1 3.4 41 13-55 3-47 (68)
147 PRK14286 chaperone protein Dna 35.8 49 0.0011 24.8 3.2 48 23-70 15-68 (372)
148 CHL00195 ycf46 Ycf46; Provisio 35.8 63 0.0014 25.3 3.9 30 7-37 161-190 (489)
149 smart00411 BHL bacterial (prok 35.7 88 0.0019 18.0 3.8 42 11-54 5-49 (90)
150 KOG1411 Aspartate aminotransfe 35.6 26 0.00056 27.2 1.7 40 13-53 369-408 (427)
151 PF02477 Nairo_nucleo: Nucleoc 34.8 24 0.00051 27.3 1.4 34 25-58 9-43 (442)
152 PF05952 ComX: Bacillus compet 34.5 81 0.0018 17.8 3.3 32 9-40 12-45 (57)
153 cd02977 ArsC_family Arsenate R 34.3 76 0.0016 18.9 3.4 54 7-62 35-93 (105)
154 PF08726 EFhand_Ca_insen: Ca2+ 34.3 47 0.001 19.3 2.4 23 31-54 7-29 (69)
155 KOG2643 Ca2+ binding protein, 34.1 77 0.0017 25.1 4.1 42 7-55 302-343 (489)
156 PRK14283 chaperone protein Dna 34.1 49 0.0011 24.8 3.0 49 23-71 16-69 (378)
157 COG1308 EGD2 Transcription fac 33.9 93 0.002 20.3 3.9 26 7-34 82-107 (122)
158 cd08040 OBF_DNA_ligase_family 33.7 49 0.0011 20.1 2.5 20 22-41 42-61 (108)
159 TIGR00370 conserved hypothetic 33.7 45 0.00098 23.1 2.6 23 11-35 91-113 (202)
160 PF03979 Sigma70_r1_1: Sigma-7 33.5 27 0.00059 20.5 1.3 29 8-38 22-50 (82)
161 PF03982 DAGAT: Diacylglycerol 33.1 77 0.0017 23.2 3.8 29 7-40 258-286 (297)
162 KOG0712 Molecular chaperone (D 33.0 61 0.0013 24.5 3.3 46 25-71 17-66 (337)
163 PHA03256 BDLF3; Provisional 32.7 41 0.0009 20.1 1.9 31 44-74 14-44 (77)
164 cd07967 OBF_DNA_ligase_III The 32.3 47 0.001 21.6 2.4 19 22-40 46-64 (139)
165 cd00481 Ribosomal_L19e Ribosom 32.1 66 0.0014 21.6 3.0 25 7-35 20-44 (145)
166 PRK14294 chaperone protein Dna 32.0 54 0.0012 24.5 2.9 22 23-44 15-37 (366)
167 PRK14296 chaperone protein Dna 31.8 59 0.0013 24.4 3.1 49 23-71 15-68 (372)
168 PRK14287 chaperone protein Dna 31.8 62 0.0013 24.2 3.2 48 23-70 15-67 (371)
169 PF13700 DUF4158: Domain of un 31.7 45 0.00097 21.8 2.2 24 8-33 2-25 (166)
170 TIGR01981 sufD FeS assembly pr 31.4 68 0.0015 23.9 3.4 29 2-33 317-345 (366)
171 PF14848 HU-DNA_bdg: DNA-bindi 31.4 1.2E+02 0.0025 19.2 4.0 33 7-40 28-61 (124)
172 PRK08570 rpl19e 50S ribosomal 31.3 71 0.0015 21.5 3.1 25 7-35 23-47 (150)
173 PRK10753 transcriptional regul 31.2 58 0.0013 19.4 2.5 51 11-63 5-64 (90)
174 TIGR01980 sufB FeS assembly pr 31.2 66 0.0014 24.8 3.3 34 2-38 396-430 (448)
175 PF04695 Pex14_N: Peroxisomal 31.0 74 0.0016 20.5 3.1 28 10-40 24-51 (136)
176 PF13518 HTH_28: Helix-turn-he 30.9 80 0.0017 16.0 3.3 27 12-40 14-40 (52)
177 PF02845 CUE: CUE domain; Int 30.6 81 0.0018 15.9 3.8 26 10-36 2-27 (42)
178 PTZ00432 falcilysin; Provision 30.6 74 0.0016 27.5 3.8 47 11-58 586-632 (1119)
179 COG4875 Uncharacterized protei 30.6 58 0.0012 21.7 2.5 28 23-52 77-104 (156)
180 PF04852 DUF640: Protein of un 30.5 1.1E+02 0.0024 20.2 3.8 16 60-75 114-129 (132)
181 PF00216 Bac_DNA_binding: Bact 30.3 1E+02 0.0022 17.7 3.4 29 10-40 4-32 (90)
182 PF09371 Tex_N: Tex-like prote 30.0 62 0.0013 22.3 2.7 30 5-38 71-100 (193)
183 KOG0844 Transcription factor E 29.9 34 0.00074 26.0 1.5 19 22-40 186-204 (408)
184 PF04783 DUF630: Protein of un 29.9 45 0.00098 19.0 1.7 18 1-18 1-18 (60)
185 TIGR01639 P_fal_TIGR01639 Plas 29.7 1.1E+02 0.0023 17.1 3.3 35 7-41 9-43 (61)
186 PF10642 Tom5: Mitochondrial i 29.6 1E+02 0.0023 16.8 3.1 19 2-20 3-21 (49)
187 KOG0042 Glycerol-3-phosphate d 29.5 28 0.0006 28.5 1.1 33 23-55 586-618 (680)
188 TIGR02408 ectoine_ThpD ectoine 29.5 1.4E+02 0.0029 21.2 4.5 38 4-41 13-54 (277)
189 cd01418 Ribosomal_L19e_A Ribos 29.3 76 0.0016 21.3 3.0 25 7-35 20-44 (145)
190 PF10975 DUF2802: Protein of u 28.9 83 0.0018 18.2 2.8 22 12-35 46-67 (70)
191 PF03250 Tropomodulin: Tropomo 28.9 93 0.002 20.9 3.3 21 23-43 23-43 (147)
192 PF04967 HTH_10: HTH DNA bindi 28.9 1.1E+02 0.0023 16.8 4.5 51 25-75 2-52 (53)
193 PF08356 EF_assoc_2: EF hand a 28.8 1.2E+02 0.0026 18.5 3.6 33 22-54 2-36 (89)
194 PF14605 Nup35_RRM_2: Nup53/35 28.7 40 0.00086 18.2 1.3 19 21-39 6-24 (53)
195 PF12282 H_kinase_N: Signal tr 28.5 70 0.0015 20.8 2.7 22 13-35 2-23 (145)
196 cd00591 HU_IHF Integration hos 28.4 1.2E+02 0.0026 17.2 3.7 43 11-55 4-49 (87)
197 PF04034 DUF367: Domain of unk 28.2 58 0.0012 21.3 2.2 27 7-37 100-126 (127)
198 PRK09613 thiH thiamine biosynt 27.9 3E+02 0.0065 21.6 6.5 62 7-74 12-73 (469)
199 PRK14285 chaperone protein Dna 27.9 56 0.0012 24.4 2.4 22 23-44 14-36 (365)
200 PF07956 DUF1690: Protein of U 27.9 93 0.002 20.5 3.2 28 3-30 5-32 (142)
201 PRK14278 chaperone protein Dna 27.8 67 0.0014 24.2 2.8 23 23-45 14-37 (378)
202 PF07037 DUF1323: Putative tra 27.8 75 0.0016 20.7 2.7 20 14-35 4-23 (122)
203 TIGR01200 Porphyromonas gingiv 27.8 65 0.0014 24.0 2.6 40 25-64 248-290 (292)
204 PHA02970 hypothetical protein; 27.7 94 0.002 19.8 3.0 26 13-40 28-53 (115)
205 PF02682 AHS1: Allophanate hyd 27.7 54 0.0012 22.6 2.1 24 10-35 99-122 (202)
206 COG0721 GatC Asp-tRNAAsn/Glu-t 27.6 1.5E+02 0.0033 18.1 4.2 31 8-38 3-33 (96)
207 cd07970 OBF_DNA_ligase_LigC Th 27.4 68 0.0015 20.3 2.4 20 22-41 38-57 (122)
208 TIGR01259 comE comEA protein. 27.4 1.3E+02 0.0027 19.0 3.7 47 8-60 62-108 (120)
209 TIGR00706 SppA_dom signal pept 27.4 1.2E+02 0.0025 20.6 3.7 39 7-55 134-172 (207)
210 KOG4119 G protein gamma subuni 27.3 44 0.00096 19.8 1.4 49 11-65 14-63 (71)
211 KOG0716 Molecular chaperone (D 27.0 77 0.0017 23.4 2.9 47 25-71 44-96 (279)
212 CHL00085 ycf24 putative ABC tr 27.0 89 0.0019 24.5 3.4 34 2-38 424-458 (485)
213 COG2042 Uncharacterized conser 26.9 76 0.0016 22.0 2.7 27 7-37 149-175 (179)
214 PF08621 RPAP1_N: RPAP1-like, 26.6 1.1E+02 0.0025 16.5 2.9 29 8-36 15-43 (49)
215 PRK11814 cysteine desulfurase 26.6 88 0.0019 24.5 3.3 34 2-38 425-459 (486)
216 cd07972 OBF_DNA_ligase_Arch_Li 26.5 69 0.0015 20.0 2.3 19 22-40 44-62 (122)
217 PF07900 DUF1670: Protein of u 26.5 99 0.0021 22.1 3.3 53 7-62 69-121 (220)
218 PF11219 DUF3014: Protein of u 26.4 1.5E+02 0.0032 20.0 4.0 51 13-75 51-103 (158)
219 PF10841 DUF2644: Protein of u 26.4 51 0.0011 18.9 1.5 35 38-72 2-48 (60)
220 PF10654 DUF2481: Protein of u 26.4 1.4E+02 0.0029 19.5 3.6 52 12-66 35-89 (126)
221 PF06698 DUF1192: Protein of u 26.2 1.1E+02 0.0023 17.4 2.8 28 2-34 15-42 (59)
222 PF04282 DUF438: Family of unk 26.1 1.5E+02 0.0032 17.4 3.8 40 22-67 27-66 (71)
223 PF04870 Moulting_cycle: Moult 26.0 83 0.0018 23.7 3.0 29 7-35 257-285 (325)
224 PF12486 DUF3702: ImpA domain 26.0 59 0.0013 21.7 2.0 30 26-55 65-94 (148)
225 PRK14300 chaperone protein Dna 25.6 83 0.0018 23.6 2.9 22 23-44 14-36 (372)
226 KOG0713 Molecular chaperone (D 25.4 93 0.002 23.6 3.1 46 25-70 29-80 (336)
227 PF14490 HHH_4: Helix-hairpin- 25.4 1.4E+02 0.0031 17.7 3.5 24 12-38 11-34 (94)
228 PF04679 DNA_ligase_A_C: ATP d 25.3 83 0.0018 18.6 2.5 19 22-40 28-46 (97)
229 PF13384 HTH_23: Homeodomain-l 25.2 97 0.0021 15.7 2.5 26 13-40 20-45 (50)
230 PF04189 Gcd10p: Gcd10p family 24.9 93 0.002 23.0 3.1 22 7-31 107-128 (299)
231 PTZ00324 glutamate dehydrogena 24.7 3E+02 0.0064 24.1 6.2 51 25-75 388-441 (1002)
232 PRK14281 chaperone protein Dna 24.7 71 0.0015 24.2 2.5 22 23-44 14-36 (397)
233 cd04401 RhoGAP_fMSB1 RhoGAP_fM 24.7 97 0.0021 21.5 3.0 42 31-74 93-135 (198)
234 COG2147 RPL19A Ribosomal prote 24.6 1.1E+02 0.0023 20.7 3.0 25 7-35 23-47 (150)
235 PRK14277 chaperone protein Dna 24.5 86 0.0019 23.6 2.9 22 23-44 16-38 (386)
236 smart00271 DnaJ DnaJ molecular 24.5 1.2E+02 0.0025 15.8 2.7 23 23-45 12-35 (60)
237 PRK15451 tRNA cmo(5)U34 methyl 24.4 1.7E+02 0.0038 20.1 4.3 55 22-80 188-242 (247)
238 COG1026 Predicted Zn-dependent 24.3 95 0.002 26.8 3.3 52 7-59 464-515 (978)
239 PF00513 Late_protein_L2: Late 24.2 48 0.001 26.0 1.5 23 56-78 29-51 (467)
240 CHL00195 ycf46 Ycf46; Provisio 24.2 1E+02 0.0022 24.3 3.3 45 9-54 414-458 (489)
241 cd01417 Ribosomal_L19e_E Ribos 24.1 1.1E+02 0.0023 20.9 3.0 25 7-35 20-44 (164)
242 PF07308 DUF1456: Protein of u 24.1 1.2E+02 0.0026 17.4 2.9 28 8-35 14-41 (68)
243 PRK00285 ihfA integration host 23.9 1.7E+02 0.0037 17.4 3.8 43 11-55 7-52 (99)
244 TIGR02675 tape_meas_nterm tape 23.9 90 0.0019 18.1 2.3 46 22-70 8-53 (75)
245 PRK14280 chaperone protein Dna 23.7 1.1E+02 0.0024 23.0 3.3 22 23-44 15-37 (376)
246 PRK10767 chaperone protein Dna 23.7 81 0.0018 23.5 2.6 22 23-44 15-37 (371)
247 PF15187 Augurin: Oesophageal 23.6 56 0.0012 20.9 1.5 18 25-42 46-63 (114)
248 PRK06474 hypothetical protein; 23.6 1.6E+02 0.0035 19.7 3.8 32 7-47 135-166 (178)
249 PRK00199 ihfB integration host 23.5 1.7E+02 0.0037 17.2 4.0 42 12-54 6-50 (94)
250 KOG2643 Ca2+ binding protein, 23.4 74 0.0016 25.2 2.4 40 36-75 431-478 (489)
251 cd07968 OBF_DNA_ligase_IV The 23.4 76 0.0016 20.4 2.1 18 22-39 51-68 (140)
252 KOG0493 Transcription factor E 23.4 69 0.0015 23.9 2.1 17 22-38 251-267 (342)
253 KOG2243 Ca2+ release channel ( 23.4 1.5E+02 0.0033 28.0 4.3 47 8-57 4026-4084(5019)
254 PHA01748 hypothetical protein 23.3 1.2E+02 0.0027 16.8 2.7 29 7-37 8-40 (60)
255 PF13348 Y_phosphatase3C: Tyro 23.2 1.4E+02 0.0031 16.3 3.2 14 23-36 54-67 (68)
256 PRK11858 aksA trans-homoaconit 23.1 74 0.0016 23.8 2.3 33 23-55 335-367 (378)
257 PRK14301 chaperone protein Dna 23.1 75 0.0016 23.8 2.3 22 23-44 15-37 (373)
258 cd04236 AAK_NAGS-Urea AAK_NAGS 22.9 1.7E+02 0.0036 21.2 4.0 28 12-41 4-31 (271)
259 PF01458 UPF0051: Uncharacteri 22.7 44 0.00096 23.0 1.0 27 4-33 199-225 (229)
260 PRK07058 acetate kinase; Provi 22.6 1.7E+02 0.0038 22.6 4.2 67 1-73 237-303 (396)
261 TIGR00995 3a0901s06TIC22 chlor 22.6 35 0.00077 25.0 0.5 45 23-67 201-252 (270)
262 PRK12379 propionate/acetate ki 22.3 1.8E+02 0.0039 22.5 4.2 69 1-73 233-302 (396)
263 PF05726 Pirin_C: Pirin C-term 22.2 80 0.0017 19.1 2.0 14 25-38 87-100 (104)
264 cd07893 OBF_DNA_ligase The Oli 22.2 89 0.0019 19.8 2.3 19 22-40 44-62 (129)
265 PTZ00097 60S ribosomal protein 22.2 1.2E+02 0.0027 20.9 3.0 25 7-35 21-45 (175)
266 PRK07914 hypothetical protein; 22.0 3.1E+02 0.0067 19.7 5.5 52 7-63 147-200 (320)
267 PHA03049 IMV membrane protein; 22.0 70 0.0015 18.8 1.5 24 14-37 43-66 (68)
268 PRK14276 chaperone protein Dna 21.8 1.2E+02 0.0026 22.8 3.2 22 23-44 15-37 (380)
269 KOG0377 Protein serine/threoni 21.8 55 0.0012 26.3 1.4 20 36-55 553-572 (631)
270 PF04355 SmpA_OmlA: SmpA / Oml 21.7 40 0.00088 18.8 0.5 22 8-33 4-25 (71)
271 COG3413 Predicted DNA binding 21.7 2.7E+02 0.0058 18.9 4.8 53 23-75 155-207 (215)
272 TIGR02660 nifV_homocitr homoci 21.4 89 0.0019 23.2 2.4 33 23-55 332-364 (365)
273 TIGR00016 ackA acetate kinase. 21.4 2.1E+02 0.0045 22.2 4.4 69 1-73 242-311 (404)
274 PF00871 Acetate_kinase: Aceto 21.3 1.4E+02 0.0031 22.7 3.5 67 1-73 235-304 (388)
275 COG2049 DUR1 Allophanate hydro 21.2 1E+02 0.0022 22.0 2.5 23 11-35 98-120 (223)
276 PRK02287 hypothetical protein; 21.2 1.2E+02 0.0025 20.9 2.7 29 7-39 141-169 (171)
277 KOG0423 Ubiquitin-protein liga 21.2 1E+02 0.0022 21.6 2.4 50 22-71 5-62 (223)
278 PRK10948 cysteine desulfurase 21.1 1.3E+02 0.0029 23.1 3.4 29 2-33 362-390 (424)
279 PF09208 Endonuc-MspI: Restric 20.8 1.3E+02 0.0027 22.2 3.0 58 12-73 134-193 (263)
280 PF11629 Mst1_SARAH: C termina 20.8 76 0.0016 17.5 1.5 31 7-38 7-37 (49)
281 PF14894 Lsm_C: Lsm C-terminal 20.7 1.1E+02 0.0024 17.7 2.2 49 27-75 2-59 (64)
282 PRK07157 acetate kinase; Provi 20.6 2.2E+02 0.0049 22.0 4.4 69 1-73 235-304 (400)
283 COG4813 ThuA Trehalose utiliza 20.6 17 0.00037 26.0 -1.5 19 61-79 54-72 (261)
284 PRK06369 nac nascent polypepti 20.6 2.2E+02 0.0049 18.2 3.8 27 6-34 73-99 (115)
285 TIGR00987 himA integration hos 20.5 2E+02 0.0044 17.0 3.8 43 11-55 6-51 (96)
286 COG0282 ackA Acetate kinase [E 20.5 2.1E+02 0.0045 22.3 4.2 33 1-35 236-268 (396)
287 PRK12821 aspartyl/glutamyl-tRN 20.4 2.2E+02 0.0048 22.7 4.4 33 7-39 388-420 (477)
288 PF02969 TAF: TATA box binding 20.4 1.7E+02 0.0037 16.8 3.0 43 7-53 20-62 (66)
289 PRK07452 DNA polymerase III su 20.4 3.3E+02 0.0071 19.4 6.7 55 7-63 149-204 (326)
290 TIGR01926 peroxid_rel uncharac 20.2 1.8E+02 0.0039 18.7 3.5 23 7-32 131-153 (177)
291 PF08625 Utp13: Utp13 specific 20.2 2.6E+02 0.0057 18.2 5.3 61 11-75 49-127 (141)
292 TIGR00207 fliG flagellar motor 20.2 1.8E+02 0.0039 21.6 3.8 37 7-43 33-71 (338)
293 PF06163 DUF977: Bacterial pro 20.1 1.2E+02 0.0025 20.0 2.5 38 23-61 4-41 (127)
294 PF14842 FliG_N: FliG N-termin 20.0 2.2E+02 0.0048 17.3 3.7 33 7-39 29-63 (108)
No 1
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.74 E-value=2.4e-18 Score=115.58 Aligned_cols=71 Identities=21% Similarity=0.384 Sum_probs=65.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCC-----------CCccCHHHhccccCCCCChhHHHHHH
Q 034861 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNA-----------KGFISADEFLSVPEFAMNPLSQVVFQ 69 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~-----------~G~l~~~ef~~ip~l~~nPf~~ri~~ 69 (81)
|||++.-++.|+|++||.| |.|+++||.|+|+||..|.|+. .-.++.+.+.++|+|+.|||.+|||.
T Consensus 1 MGNK~~vFT~eqLd~YQDC--TFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e 78 (189)
T KOG0038|consen 1 MGNKQTVFTEEQLDEYQDC--TFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICE 78 (189)
T ss_pred CCCccceeeHHHHhhhccc--ccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHH
Confidence 9999999999999999999 6999999999999999999872 23788899999999999999999999
Q ss_pred HhHH
Q 034861 70 NQLM 73 (81)
Q Consensus 70 ~F~~ 73 (81)
+|+.
T Consensus 79 ~FSe 82 (189)
T KOG0038|consen 79 VFSE 82 (189)
T ss_pred Hhcc
Confidence 9964
No 2
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.62 E-value=5.7e-16 Score=106.47 Aligned_cols=72 Identities=44% Similarity=0.725 Sum_probs=67.2
Q ss_pred CCCCCC-CCCHHHHHHHHHhhcCC----CCHHHHHHHHHHHhhhCCC-CCCccCHHHhccccCCCCChhHHHHHHHhHHH
Q 034861 1 MGTASS-MLTQYDIEEVQQHCHNL----FSQQEIVSLYQRFCQLDRN-AKGFISADEFLSVPEFAMNPLSQVVFQNQLML 74 (81)
Q Consensus 1 MG~~~S-~ls~e~l~~l~~~t~T~----Fs~~EI~~l~~rF~~ld~d-~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~ 74 (81)
||+..| .++.+++.+++.. |+ ||..||.+||.||++++++ ++|.++++||..||+++.|||++||+++|++.
T Consensus 1 Mg~~~s~~~~~~~~~~~~~~--~~~~~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~ 78 (187)
T KOG0034|consen 1 MGNLSSTLLSDEDLEELQMY--TGDPTQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTD 78 (187)
T ss_pred CCcccccccchhhhHHHHhc--cCCCcccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhcc
Confidence 899888 4667899999999 58 9999999999999999999 89999999999999999999999999999975
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=7.1e-13 Score=91.63 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=63.8
Q ss_pred CCCC-CCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc-----cCCCCChhHHHHHHHhHH
Q 034861 1 MGTA-SSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV-----PEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 1 MG~~-~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i-----p~l~~nPf~~ri~~~F~~ 73 (81)
||.+ .++++++.++++.+. |+|+++||++||+.|++.|| +|.++.++|..| |..+..-|++++|++||.
T Consensus 1 m~~~~~~~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP--~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~ 75 (193)
T KOG0044|consen 1 MGKKSNSKLQPESLEQLVQQ--TKFSKKEIQQWYRGFKNECP--SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDK 75 (193)
T ss_pred CCccccccCCcHHHHHHHHh--cCCCHHHHHHHHHHhcccCC--CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc
Confidence 7777 779999999999999 69999999999999999999 999999999887 878888899999999974
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=64.12 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc----cCCCCChhHHHHHHHhHH
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV----PEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i----p~l~~nPf~~ri~~~F~~ 73 (81)
|.|+++||++|++.|..+|+|++|.|+++||..| |....++++.+++.+++.
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~ 67 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA 67 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC
Confidence 7999999999999999999999999999999987 666788899999999873
No 5
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.98 E-value=0.0015 Score=39.67 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhcccc-CCC-CChhHHHHHHHhH
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVP-EFA-MNPLSQVVFQNQL 72 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip-~l~-~nPf~~ri~~~F~ 72 (81)
.+|.+|+..+.+.|..+|+|++|.|+.+|+..+. .+. .+.-.+++++.++
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d 54 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLAD 54 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3577788888888888888888888888887642 111 2234555665543
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.87 E-value=0.002 Score=36.00 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH-HhhhCCCCCCccCHHHhcc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR-FCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r-F~~ld~d~~G~l~~~ef~~ 54 (81)
.++.+++..+........+..++....+. |...|+|++|.|+.+||..
T Consensus 16 ~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 16 YISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp EEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 45556666655552112224444433333 5555666666666666654
No 7
>PLN02964 phosphatidylserine decarboxylase
Probab=96.80 E-value=0.0013 Score=52.73 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc-c----cCCCCChhHHHHHHHhH
Q 034861 6 SMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS-V----PEFAMNPLSQVVFQNQL 72 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~-i----p~l~~nPf~~ri~~~F~ 72 (81)
+.++++++.++++...|.|+.+|++.+++.|..+|+|++|.+ ...+.. + |.-...+|.+++|+.||
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D 189 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVD 189 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 368999999999883349999999999999999999999876 222221 1 33344456778887765
No 8
>PTZ00184 calmodulin; Provisional
Probab=96.68 E-value=0.0032 Score=39.39 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc-cCCC---CChhHHHHHHHhH
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV-PEFA---MNPLSQVVFQNQL 72 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i-p~l~---~nPf~~ri~~~F~ 72 (81)
+.++.++++++.+.|..+|++++|.|+.+||..+ ..+. .++...++++.++
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 57 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 57 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Confidence 3578888888889999888888899999988764 2221 2334555555543
No 9
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.65 E-value=0.0012 Score=32.53 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.4
Q ss_pred HHHHhhhCCCCCCccCHHHhccc
Q 034861 33 YQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 33 ~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
-+-|+.+|.|++|.|+.+||+.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~ 25 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEM 25 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHH
Confidence 35577889999999999999864
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.61 E-value=0.0022 Score=35.86 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.9
Q ss_pred HHHHHHhhhCCCCCCccCHHHhccccC
Q 034861 31 SLYQRFCQLDRNAKGFISADEFLSVPE 57 (81)
Q Consensus 31 ~l~~rF~~ld~d~~G~l~~~ef~~ip~ 57 (81)
||.+.|+.+|.|++|.|+.+||..+..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~ 27 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALK 27 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHH
Confidence 578899999999999999999998743
No 11
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.60 E-value=0.0014 Score=32.22 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=20.3
Q ss_pred HHHHHHhhhCCCCCCccCHHHhccc
Q 034861 31 SLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 31 ~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
+|.+-|+.+|.|++|.|+.+||..+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~ 25 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAI 25 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHH
Confidence 4567788889999999999999864
No 12
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.56 E-value=0.0016 Score=31.06 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.2
Q ss_pred HHHhhhCCCCCCccCHHHhccc
Q 034861 34 QRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 34 ~rF~~ld~d~~G~l~~~ef~~i 55 (81)
+-|+.+|.|++|.|+.+||.++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHH
Confidence 4688999999999999999763
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.38 E-value=0.0049 Score=36.54 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhhCC--CCCCccCHHHhccccC--C---C----CChhHHHHHHHhH
Q 034861 26 QQEIVSLYQRFCQLDR--NAKGFISADEFLSVPE--F---A----MNPLSQVVFQNQL 72 (81)
Q Consensus 26 ~~EI~~l~~rF~~ld~--d~~G~l~~~ef~~ip~--l---~----~nPf~~ri~~~F~ 72 (81)
+++|..+.+.|+.+|+ |++|.|+.++|..+.. + . .++..++|++.|+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d 61 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLD 61 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc
Confidence 4678889999999999 7999999999988632 1 1 2567777877764
No 14
>PTZ00183 centrin; Provisional
Probab=96.34 E-value=0.0093 Score=37.85 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
+.++..++..+.+.|..+|++++|.|+.+||..+
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~ 42 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVA 42 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 4778888888888888888888888888888653
No 15
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.08 E-value=0.025 Score=31.15 Aligned_cols=45 Identities=9% Similarity=0.252 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 6 SMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..++.+++..+... .+++..++.++++ ..+++++|.|+.+||..+
T Consensus 14 G~i~~~el~~~l~~--~g~~~~~~~~i~~---~~d~~~~g~i~~~ef~~~ 58 (67)
T cd00052 14 GLISGDEARPFLGK--SGLPRSVLAQIWD---LADTDKDGKLDKEEFAIA 58 (67)
T ss_pred CcCcHHHHHHHHHH--cCCCHHHHHHHHH---HhcCCCCCcCCHHHHHHH
Confidence 35788888887776 4788888877754 456677889999998764
No 16
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.93 E-value=0.025 Score=34.16 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 5 SSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 5 ~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.+.++.+++.++... .+++.+++.++++. .+++.+|.|+.+||+.+
T Consensus 24 ~G~Is~~el~~~l~~--~~~~~~ev~~i~~~---~d~~~~g~I~~~eF~~~ 69 (96)
T smart00027 24 DGTVTGAQAKPILLK--SGLPQTLLAKIWNL---ADIDNDGELDKDEFALA 69 (96)
T ss_pred CCeEeHHHHHHHHHH--cCCCHHHHHHHHHH---hcCCCCCCcCHHHHHHH
Confidence 346888999998877 48999999888765 56777999999999875
No 17
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.72 E-value=0.019 Score=36.72 Aligned_cols=48 Identities=19% Similarity=0.041 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhH
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQL 72 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~ 72 (81)
.+.....+.-.|..+|.|++|.|+++|+..+--....+..+++++.+|
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D 90 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCD 90 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHC
Confidence 456667788889999999999999999987641122345566666654
No 18
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.67 E-value=0.023 Score=30.58 Aligned_cols=46 Identities=26% Similarity=0.504 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHhhcCC-CCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQHCHNL-FSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~-Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.++.+++.......-.. +|++|+..+++ ..|+|++|.|+.+||+.+
T Consensus 4 ~i~~~~~~~~l~~~g~~~~s~~e~~~l~~---~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKDLSEEEVDRLFR---EFDTDGDGYISFDEFISM 50 (54)
T ss_dssp EEEHHHHHHHHHHTTSSSSCHHHHHHHHH---HHTTSSSSSEEHHHHHHH
T ss_pred EECHHHHHHHHHHhCCCCCCHHHHHHHHH---hcccCCCCCCCHHHHHHH
Confidence 46778887777431024 89999776655 567778999999999864
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.63 E-value=0.025 Score=34.27 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHh----hcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQH----CHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~----t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.++.++|.++... - ..++.+||..+. +.+|.|++|.|+.+||..+
T Consensus 28 ~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~---~~~D~d~dG~Idf~EFv~l 76 (88)
T cd05029 28 TLSKKELKELIQKELTIG-SKLQDAEIAKLM---EDLDRNKDQEVNFQEYVTF 76 (88)
T ss_pred EECHHHHHHHHHHHHhcC-CCCCHHHHHHHH---HHhcCCCCCCCcHHHHHHH
Confidence 6888999988852 2 357999999874 4668889999999999764
No 20
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.45 E-value=0.016 Score=31.97 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=29.3
Q ss_pred HHHhhhCCCCCCccCHHHhcccc-CC-CCChhHHHHHHHhH
Q 034861 34 QRFCQLDRNAKGFISADEFLSVP-EF-AMNPLSQVVFQNQL 72 (81)
Q Consensus 34 ~rF~~ld~d~~G~l~~~ef~~ip-~l-~~nPf~~ri~~~F~ 72 (81)
+.|..+|+|++|.|+.+|+..+. .+ ..++.++++++.++
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d 43 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLAD 43 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 45888899999999999998752 22 24567788888775
No 21
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=94.95 E-value=0.11 Score=36.84 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHhcc-c--cCCCCCh-hHHHHHHHhHH
Q 034861 29 IVSLYQRFCQLDRNAKGFISADEFLS-V--PEFAMNP-LSQVVFQNQLM 73 (81)
Q Consensus 29 I~~l~~rF~~ld~d~~G~l~~~ef~~-i--p~l~~nP-f~~ri~~~F~~ 73 (81)
|.+|-+-|+..|.|.+|.|+..|+.. + ....-+| +.+.|++-||.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~ 171 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDR 171 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcc
Confidence 67778889999999999999999976 3 2233444 66666666653
No 22
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.89 E-value=0.17 Score=26.13 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
.++.+++..+........+.+++..+++. .+++++|.|+.++|..
T Consensus 16 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 16 TISADELKAALKSLGEGLSEEEIDEMIRE---VDKDGDGKIDFEEFLE 60 (63)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHH---hCCCCCCeEeHHHHHH
Confidence 46777777776653235667777765554 4556678888888765
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=94.78 E-value=0.086 Score=31.98 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHh------hcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQH------CHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~------t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.+|.++|.++... + ..-+.++|..+.+. +|.|++|.|+.+||..+
T Consensus 28 ~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~e---lD~n~dG~Idf~EF~~l 78 (93)
T cd05026 28 KLSKGELKELLQRELTDFLS-SQKDPMLVDKIMND---LDSNKDNEVDFNEFVVL 78 (93)
T ss_pred EECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHH---hCCCCCCCCCHHHHHHH
Confidence 3889999998754 2 22366677766554 57888999999999875
No 24
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=94.77 E-value=0.063 Score=32.75 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHh-hcCCCCH-HHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 6 SMLTQYDIEEVQQH-CHNLFSQ-QEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 6 S~ls~e~l~~l~~~-t~T~Fs~-~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..++..+|..+... --..++. +++..+ ++.+|.|++|.|+.+||..+
T Consensus 24 g~i~~~ELk~ll~~elg~~ls~~~~v~~m---i~~~D~d~DG~I~F~EF~~l 72 (89)
T cd05022 24 ESLTASEFQELLTQQLPHLLKDVEGLEEK---MKNLDVNQDSKLSFEEFWEL 72 (89)
T ss_pred CeECHHHHHHHHHHHhhhhccCHHHHHHH---HHHhCCCCCCCCcHHHHHHH
Confidence 36888899888765 2124666 676665 56789999999999999875
No 25
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=94.67 E-value=0.064 Score=32.55 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHhhc-----CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQHCH-----NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~-----T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.||.+|+..+...-. +.-++.++.++.+ .+|.|++|.|+.+||..+
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~---~~D~d~DG~I~f~EF~~l 77 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMK---KLDLNSDGQLDFQEFLNL 77 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHH---HcCCCCCCcCcHHHHHHH
Confidence 589999999987610 1234677877654 668888999999999864
No 26
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=94.53 E-value=0.021 Score=40.61 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccC
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPE 57 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~ 57 (81)
..||+++|+.++.-|+++|.+.+|+|+..|++.+.+
T Consensus 91 ~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmE 126 (244)
T KOG0041|consen 91 SEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMME 126 (244)
T ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 589999999999999999999999999999987643
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.38 E-value=0.12 Score=31.15 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHh------hcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 6 SMLTQYDIEEVQQH------CHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 6 S~ls~e~l~~l~~~------t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..++.+++..+... . ..++.++|..+.+. +|.+++|.|+.+||+++
T Consensus 25 G~Is~~El~~~l~~~~g~~lg-~~~s~~ei~~~~~~---~D~~~dg~I~f~eF~~l 76 (94)
T cd05031 25 NTLSRKELKKLMEKELSEFLK-NQKDPMAVDKIMKD---LDQNRDGKVNFEEFVSL 76 (94)
T ss_pred CeECHHHHHHHHHHHhHHHhh-ccccHHHHHHHHHH---hCCCCCCcCcHHHHHHH
Confidence 46888999888653 2 25688888887765 57788999999999865
No 28
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=93.97 E-value=0.16 Score=30.48 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHhhc-CCCC----HHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 6 SMLTQYDIEEVQQHCH-NLFS----QQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~-T~Fs----~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..++.++|..+..... ...+ ..++..+++.+ |+|++|.|+.+||..+
T Consensus 25 ~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~---D~d~dG~I~f~eF~~~ 76 (88)
T cd05030 25 DTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDL---DTNQDGQLSFEEFLVL 76 (88)
T ss_pred ccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHc---CCCCCCcCcHHHHHHH
Confidence 4689999998886310 1234 78888887765 7778999999999875
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=93.82 E-value=0.2 Score=31.99 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcccc
Q 034861 5 SSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVP 56 (81)
Q Consensus 5 ~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip 56 (81)
...|+.+||..+. . .-..+.+.++ |...|.|++|.||.+||....
T Consensus 62 DG~Ls~~EL~~~~-l---~~~e~~~~~f---~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 62 DGKLSHHELAPIR-L---DPNEHCIKPF---FESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CCcCCHHHHHHHH-c---cchHHHHHHH---HHHHCCCCCCCCCHHHHHHHH
Confidence 3467888887765 2 2234555544 444588889999999998754
No 30
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=93.80 E-value=0.19 Score=30.33 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHh-----hcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQH-----CHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~-----t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.++.++|..+... .-...++++|..+.+ .+|+|++|.|+.+||..+
T Consensus 26 ~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~---~~D~n~dG~v~f~eF~~l 76 (88)
T cd05027 26 KLKKSELKELINNELSHFLEEIKEQEVVDKVME---TLDSDGDGECDFQEFMAF 76 (88)
T ss_pred EECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHH---HhCCCCCCcCcHHHHHHH
Confidence 3888999998875 202467888988877 558889999999999864
No 31
>PTZ00183 centrin; Provisional
Probab=93.66 E-value=0.53 Score=29.64 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
.++.+++..+........+..++..+++. +|++++|.|+.++|..
T Consensus 33 ~i~~~e~~~~l~~~g~~~~~~~~~~l~~~---~d~~~~g~i~~~eF~~ 77 (158)
T PTZ00183 33 TIDPKELKVAMRSLGFEPKKEEIKQMIAD---VDKDGSGKIDFEEFLD 77 (158)
T ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHH---hCCCCCCcEeHHHHHH
Confidence 46666666655542012455555544444 4555677777777765
No 32
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=93.56 E-value=0.18 Score=32.66 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhccc-cCCCCChhHHH
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLSV-PEFAMNPLSQV 66 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i-p~l~~nPf~~r 66 (81)
+..++..+.+-|+..|.|++|.|+.+|+..+ ..+..+|-...
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~e 45 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEE 45 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHH
Confidence 4455555556666666666666666666553 34444443333
No 33
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=93.46 E-value=0.17 Score=30.78 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhCC-CCCCccCHHHhccc-----cCCCCC-hhHHHHHHHhH
Q 034861 28 EIVSLYQRFCQLDR-NAKGFISADEFLSV-----PEFAMN-PLSQVVFQNQL 72 (81)
Q Consensus 28 EI~~l~~rF~~ld~-d~~G~l~~~ef~~i-----p~l~~n-Pf~~ri~~~F~ 72 (81)
-|..+..-|+..|+ +++|.|+.+||..+ |+.-.+ .-.+.+++..|
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D 57 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLD 57 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhC
Confidence 46667788888888 88999999999874 443334 56666666544
No 34
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.33 E-value=0.36 Score=28.32 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHh-hcC----CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 5 SSMLTQYDIEEVQQH-CHN----LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 5 ~S~ls~e~l~~l~~~-t~T----~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
...++.+++..+... --. ..+.++|.++++.| +.+++|.|+.++|..+
T Consensus 24 ~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~---d~~~~g~I~f~eF~~~ 76 (88)
T cd00213 24 KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDL---DVNKDGKVDFQEFLVL 76 (88)
T ss_pred CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh---ccCCCCcCcHHHHHHH
Confidence 346888888888643 001 23588888887665 6677999999999875
No 35
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.10 E-value=0.12 Score=29.36 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRF 36 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF 36 (81)
.|.+++|+.|... |++|.++|+.||..=
T Consensus 22 ~L~E~DL~~L~~k--S~ms~qqVr~WFa~~ 49 (56)
T PF11569_consen 22 QLQEEDLDELCDK--SRMSYQQVRDWFAER 49 (56)
T ss_dssp ---TTHHHHHHHH--TT--HHHHHHHHHHH
T ss_pred CccHhhHHHHHHH--HCCCHHHHHHHHHHh
Confidence 5889999999999 699999999999753
No 36
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=92.95 E-value=0.31 Score=29.08 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHh-h---c-CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQH-C---H-NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~-t---~-T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.++.+++..+... - + ...+..+++++.+. +|+|++|.|+.++|..+
T Consensus 27 ~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~---~D~d~~G~I~f~eF~~l 77 (92)
T cd05025 27 KLSKKELKDLLQTELSDFLDAQKDADAVDKIMKE---LDENGDGEVDFQEFVVL 77 (92)
T ss_pred eECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH---HCCCCCCcCcHHHHHHH
Confidence 3888989888753 0 0 12377888887775 57888999999999875
No 37
>PTZ00184 calmodulin; Provisional
Probab=92.74 E-value=0.33 Score=30.10 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCC----CCChhHHHHHHHhH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEF----AMNPLSQVVFQNQL 72 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l----~~nPf~~ri~~~F~ 72 (81)
.++-++...+.... ..... .-.++...|..+|.+++|.|+.+||..+... -....++.+++.++
T Consensus 63 ~i~~~ef~~~l~~~-~~~~~-~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
T PTZ00184 63 TIDFPEFLTLMARK-MKDTD-SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
T ss_pred cCcHHHHHHHHHHh-ccCCc-HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcC
Confidence 45556655544321 11111 1234566678888888999999998764211 12345556666553
No 38
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.49 E-value=0.11 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=17.7
Q ss_pred HHHhhhCCCCCCccCHHHhccc
Q 034861 34 QRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 34 ~rF~~ld~d~~G~l~~~ef~~i 55 (81)
+-|+..+++++|.|+.++|..+
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~ 25 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDL 25 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHH
Confidence 4567778888999999999764
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=92.37 E-value=0.12 Score=30.93 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhC-CCCCC-ccCHHHhccccC--C-------CCChhHHHHHHHhH
Q 034861 29 IVSLYQRFCQLD-RNAKG-FISADEFLSVPE--F-------AMNPLSQVVFQNQL 72 (81)
Q Consensus 29 I~~l~~rF~~ld-~d~~G-~l~~~ef~~ip~--l-------~~nPf~~ri~~~F~ 72 (81)
+..+.+-|+.+| .|++| .|+.+|+..+.. + ....-+++|++.+|
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D 62 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELD 62 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 456777888886 88899 599999988642 2 12345777777664
No 40
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=92.09 E-value=0.21 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
..|+++.++|+.. |++|.++|..|+-.
T Consensus 10 YPs~~ek~~L~~~--tgls~~Qi~~WF~N 36 (40)
T PF05920_consen 10 YPSKEEKEELAKQ--TGLSRKQISNWFIN 36 (40)
T ss_dssp S--HHHHHHHHHH--HTS-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 4689999999999 59999999999853
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.99 E-value=0.2 Score=30.12 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhCC-CC-CCccCHHHhccccC------C---CCChhHHHHHHHhH
Q 034861 29 IVSLYQRFCQLDR-NA-KGFISADEFLSVPE------F---AMNPLSQVVFQNQL 72 (81)
Q Consensus 29 I~~l~~rF~~ld~-d~-~G~l~~~ef~~ip~------l---~~nPf~~ri~~~F~ 72 (81)
+..+.+-|..+|. |+ +|.|+.+|+..+.. + ...+..+.+++.++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D 61 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLD 61 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhC
Confidence 5567778888876 76 69999999997632 1 13345677776664
No 42
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=91.09 E-value=0.19 Score=25.96 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=27.9
Q ss_pred HHHHHhhhCCCCCCccCHHHhccccC-C---CCChhHHHHHHHhH
Q 034861 32 LYQRFCQLDRNAKGFISADEFLSVPE-F---AMNPLSQVVFQNQL 72 (81)
Q Consensus 32 l~~rF~~ld~d~~G~l~~~ef~~ip~-l---~~nPf~~ri~~~F~ 72 (81)
+.+-|..+|++.+|.|+.+||..+.. + ...+...++++.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 46 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVD 46 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 34557788999999999999988632 2 23345556666554
No 43
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=91.06 E-value=0.49 Score=25.40 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRF 36 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF 36 (81)
..+.+++++|... |+++..+|..|++.=
T Consensus 24 ~P~~~~~~~la~~--~~l~~~qV~~WF~nr 51 (59)
T cd00086 24 YPSREEREELAKE--LGLTERQVKIWFQNR 51 (59)
T ss_pred CCCHHHHHHHHHH--HCcCHHHHHHHHHHH
Confidence 5788999999999 599999999998753
No 44
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=90.95 E-value=0.31 Score=33.30 Aligned_cols=33 Identities=27% Similarity=0.606 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
-|+..+|+.+.+-|.-+|.|++|.|.++++..+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~ 57 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDM 57 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHH
Confidence 589999999999999999999999999998764
No 45
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.81 E-value=0.31 Score=32.21 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhh------hCCCCCCccCHHHhccc----cCC-CCChhHHHHHHHhHH
Q 034861 6 SMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQ------LDRNAKGFISADEFLSV----PEF-AMNPLSQVVFQNQLM 73 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~------ld~d~~G~l~~~ef~~i----p~l-~~nPf~~ri~~~F~~ 73 (81)
..|||+|..+||+-+ .+|.+.|+...+.|+. .++ .+.|+.+-|+.. .+. -..+|..++|.+|..
T Consensus 6 ~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~--~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNP--EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEE--TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred eccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCC--CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 369999999999995 8899999999999973 444 558998888764 222 344599999998854
No 46
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=90.74 E-value=0.29 Score=29.63 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhh-hCCCCCC-ccCHHHhccc-----cCCC----CChhHHHHHHHhH
Q 034861 27 QEIVSLYQRFCQ-LDRNAKG-FISADEFLSV-----PEFA----MNPLSQVVFQNQL 72 (81)
Q Consensus 27 ~EI~~l~~rF~~-ld~d~~G-~l~~~ef~~i-----p~l~----~nPf~~ri~~~F~ 72 (81)
+-|..|.+-|++ .+.+++| .|+++||..+ |... ...-.+.+++.+|
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D 62 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLD 62 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcC
Confidence 458888999999 5676654 9999999986 2211 2245666766543
No 47
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=88.47 E-value=0.68 Score=28.61 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhhcCCC--------CHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQHCHNLF--------SQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~F--------s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.|++.|+.+|.+. .| +++.|. +-++.+|.|++|.|+-.||..+
T Consensus 23 tLsk~Elk~Ll~~---Elp~~l~~~~d~~~vd---~im~~LD~n~Dg~vdF~EF~~L 73 (91)
T cd05024 23 YLNRDDLQKLMEK---EFSEFLKNQNDPMAVD---KIMKDLDDCRDGKVGFQSFFSL 73 (91)
T ss_pred cCCHHHHHHHHHH---HhHHHHcCCCCHHHHH---HHHHHhCCCCCCcCcHHHHHHH
Confidence 5888999888754 33 234444 4567899999999999999874
No 48
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=88.25 E-value=1 Score=23.93 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
.++++++++|... ++++..+|..|+..
T Consensus 24 ~P~~~~~~~la~~--~~l~~~qV~~WF~n 50 (56)
T smart00389 24 YPSREEREELAAK--LGLSERQVKVWFQN 50 (56)
T ss_pred CCCHHHHHHHHHH--HCcCHHHHHHhHHH
Confidence 4788999999999 59999999999864
No 49
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=88.20 E-value=0.65 Score=27.75 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhCCC--CCCccCHHHhccccC-C----CC----ChhHHHHHHHhH
Q 034861 27 QEIVSLYQRFCQLDRN--AKGFISADEFLSVPE-F----AM----NPLSQVVFQNQL 72 (81)
Q Consensus 27 ~EI~~l~~rF~~ld~d--~~G~l~~~ef~~ip~-l----~~----nPf~~ri~~~F~ 72 (81)
+-|..+.+-|++.+.. .+|.|+.+||..+.. . .. ..-.+.+++.+|
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D 61 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLD 61 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcC
Confidence 3477788888888754 478999999988642 1 11 445667776664
No 50
>PF14658 EF-hand_9: EF-hand domain
Probab=88.06 E-value=1.6 Score=25.45 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=27.9
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHHhhhCCCCC-CccCHHHhcccc
Q 034861 13 IEEVQQHCHN-LFSQQEIVSLYQRFCQLDRNAK-GFISADEFLSVP 56 (81)
Q Consensus 13 l~~l~~~t~T-~Fs~~EI~~l~~rF~~ld~d~~-G~l~~~ef~~ip 56 (81)
+..|..+| . ..+..+|+.|++ .+||++. |.|+.++|+.|.
T Consensus 21 ~~~Lra~~-~~~p~e~~Lq~l~~---elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 21 ITYLRAVT-GRSPEESELQDLIN---ELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred HHHHHHHc-CCCCcHHHHHHHHH---HhCCCCCCceEeHHHHHHHH
Confidence 34445553 3 466777777665 5899887 999999998753
No 51
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=87.74 E-value=1.4 Score=27.58 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 6 SMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
..++.++..++-.. ++++.+.+.+++. --|.|++|+|+.+||+-
T Consensus 24 g~isg~~a~~~f~~--S~L~~~~L~~IW~---LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 24 GKISGDQAREFFMK--SGLPRDVLAQIWN---LADIDNDGKLDFEEFAI 67 (104)
T ss_dssp TEEEHHHHHHHHHH--TTSSHHHHHHHHH---HH-SSSSSEEEHHHHHH
T ss_pred CeEeHHHHHHHHHH--cCCCHHHHHHHHh---hhcCCCCCcCCHHHHHH
Confidence 35777888888777 4999988888875 35777799999999964
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=87.36 E-value=0.69 Score=27.85 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhC-CCCCC-ccCHHHhccc
Q 034861 28 EIVSLYQRFCQLD-RNAKG-FISADEFLSV 55 (81)
Q Consensus 28 EI~~l~~rF~~ld-~d~~G-~l~~~ef~~i 55 (81)
-|..+.+-|+..| +|++| .|+.+|+..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~l 35 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKEL 35 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHH
Confidence 4667788888887 78899 6999999886
No 53
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=85.86 E-value=0.72 Score=29.82 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 29 IVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 29 I~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
...+-+-|+.+|+|++|+|+.+|+..+
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~ 110 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKV 110 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHH
Confidence 445667788889999999999999886
No 54
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=84.86 E-value=1 Score=27.18 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhC-CCCCC-ccCHHHhccccCC------C---CChhHHHHHHHhH
Q 034861 29 IVSLYQRFCQLD-RNAKG-FISADEFLSVPEF------A---MNPLSQVVFQNQL 72 (81)
Q Consensus 29 I~~l~~rF~~ld-~d~~G-~l~~~ef~~ip~l------~---~nPf~~ri~~~F~ 72 (81)
|..+-+-|+..| .|++| +|+.+|+..+..- . ...-.+.|++.+|
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD 63 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLD 63 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhC
Confidence 555666677766 66788 5999999986421 1 1224666666654
No 55
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=84.48 E-value=2.4 Score=22.76 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
.++.++.++|... ++++..+|..||..
T Consensus 24 ~p~~~~~~~la~~--l~l~~~~V~~WF~n 50 (57)
T PF00046_consen 24 YPSKEEREELAKE--LGLTERQVKNWFQN 50 (57)
T ss_dssp SCHHHHHHHHHHH--HTSSHHHHHHHHHH
T ss_pred ccccccccccccc--ccccccccccCHHH
Confidence 5778899999999 49999999999864
No 56
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=84.25 E-value=2.1 Score=33.65 Aligned_cols=48 Identities=19% Similarity=0.463 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCC-CChhHHHHHH
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFA-MNPLSQVVFQ 69 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~-~nPf~~ri~~ 69 (81)
-.||-..-..+|-+|-.||.|-+|.|+.+++...-..+ .+-+.+|||.
T Consensus 270 ~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs 318 (493)
T KOG2562|consen 270 RYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFS 318 (493)
T ss_pred hheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHh
Confidence 38999999999999999999999999999999875543 3669999988
No 57
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=83.99 E-value=1.1 Score=28.30 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCC-CCChhHHHHHHHhH
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEF-AMNPLSQVVFQNQL 72 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l-~~nPf~~ri~~~F~ 72 (81)
.|.-|.+.+ +. ...=..+-+||.++.. +|.|++++|...-.. ++..||..+|++..
T Consensus 15 GLrFIskt~-~~--~~~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALa 71 (100)
T PF08414_consen 15 GLRFISKTT-GG--ADGWKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALA 71 (100)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHH
T ss_pred cccceecCC-CC--ccCHHHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 344455553 22 3356778899999998 899999999875443 46679999988764
No 58
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.50 E-value=1.9 Score=32.28 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhccc--cCCCCChhHHHH
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLSV--PEFAMNPLSQVV 67 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i--p~l~~nPf~~ri 67 (81)
=++-|.+.-+||+.-|.|++|.++++||... |+- +|-...|
T Consensus 158 ~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe--~p~M~~i 200 (325)
T KOG4223|consen 158 YKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEE--HPHMKDI 200 (325)
T ss_pred HHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhh--cchHHHH
Confidence 3677899999999999999999999999986 543 6655544
No 59
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=83.31 E-value=1 Score=25.09 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 9 TQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 9 s~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
|-.|+..+-+.. +..-++ .+.+..|++.|.+++|+|..+||..
T Consensus 3 sf~Evk~lLk~~--NI~~~~-~yA~~LFq~~D~s~~g~Le~~Ef~~ 45 (51)
T PF14788_consen 3 SFKEVKKLLKMM--NIEMDD-EYARQLFQECDKSQSGRLEGEEFEE 45 (51)
T ss_dssp EHHHHHHHHHHT--T----H-HHHHHHHHHH-SSSSSEBEHHHHHH
T ss_pred CHHHHHHHHHHH--ccCcCH-HHHHHHHHHhcccCCCCccHHHHHH
Confidence 344555555552 444433 3456679999999999999999875
No 60
>PLN02964 phosphatidylserine decarboxylase
Probab=83.03 E-value=2.9 Score=33.95 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.++-+|+..+....-...+.+||..+++ .+|+|++|.|+.+||..+
T Consensus 195 ~IdfdEFl~lL~~lg~~~seEEL~eaFk---~fDkDgdG~Is~dEL~~v 240 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLVAANKKEELFK---AADLNGDGVVTIDELAAL 240 (644)
T ss_pred eEcHHHHHHHHHHhccCCCHHHHHHHHH---HhCCCCCCcCCHHHHHHH
Confidence 3555555555443201356666665554 457777899999988775
No 61
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=81.61 E-value=11 Score=24.32 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHH-hhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRF-CQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLMLI 75 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF-~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~~ 75 (81)
.++.++--++-..+ ..-|.+||++-|++- ++..||+.| +. ....+|-++++.|+
T Consensus 61 ~Ms~~eAy~ILGv~-~~As~~eIkkaYRrLa~~~HPDkgG--s~------------~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNIS-PTASKERIREAHKQLMLRNHPDNGG--ST------------YIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHhCCCCCC--CH------------HHHHHHHHHHHHHh
Confidence 34444444444443 467899999999887 556787543 12 13456777777664
No 62
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=80.84 E-value=3.4 Score=27.79 Aligned_cols=35 Identities=9% Similarity=0.153 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCC
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNA 43 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~ 43 (81)
..+.++..++... .+++.....+||..|.+..|+.
T Consensus 115 ~V~~~~w~~l~~~--~g~~~~~m~~wh~~fe~~~p~~ 149 (172)
T cd04790 115 LVTKEKWVAILKA--AGMDEADMRRWHIEFEKMEPEA 149 (172)
T ss_pred cCCHHHHHHHHHH--cCCChHHHHHHHHHHHHhCcHH
Confidence 4667888888888 5999999999999999999953
No 63
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=80.67 E-value=3.5 Score=24.68 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc-ccC-CCCChhHHHHHHHh
Q 034861 16 VQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS-VPE-FAMNPLSQVVFQNQ 71 (81)
Q Consensus 16 l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~-ip~-l~~nPf~~ri~~~F 71 (81)
|... +||+++|..+.+-|+.+.. + .++.++-.+ +-+ ...+|.++.+++-+
T Consensus 23 LrR~---Gfs~~~i~~l~~ayr~l~~--~-~~~~~~a~~~l~~~~~~~~~v~~~~~Fi 74 (83)
T PF13720_consen 23 LRRR---GFSKEEISALRRAYRILFR--S-GLTLEEALEELEEEYPDSPEVREIVDFI 74 (83)
T ss_dssp HHHT---TS-HHHHHHHHHHHHHHHT--S-SS-HHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHc---CCCHHHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3555 9999999999999999985 3 255555543 433 56699999888754
No 64
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=80.58 E-value=1 Score=31.30 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 24 FSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 24 Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
=+.+|=.+|+ |+-.|.|++|+|+++|+..|
T Consensus 96 Gt~eekl~w~--F~lyD~dgdG~It~~Eml~i 125 (193)
T KOG0044|consen 96 GTLEEKLKWA--FRLYDLDGDGYITKEEMLKI 125 (193)
T ss_pred CcHHHHhhhh--heeecCCCCceEcHHHHHHH
Confidence 3455555666 88888888999999888775
No 65
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=79.79 E-value=4.6 Score=24.19 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhCC-CC-CCccCHHHhcccc
Q 034861 27 QEIVSLYQRFCQLDR-NA-KGFISADEFLSVP 56 (81)
Q Consensus 27 ~EI~~l~~rF~~ld~-d~-~G~l~~~ef~~ip 56 (81)
+-|..+-.-|++.+. |+ +|.|+.+||..+.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l 38 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELI 38 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHH
Confidence 345555666666665 44 7899999998865
No 66
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=79.25 E-value=3.4 Score=28.48 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=20.9
Q ss_pred HHHHHHhhhCCCCCCccCHHHhccc
Q 034861 31 SLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 31 ~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
++.=-|+-+|.+++|.|+++|+.++
T Consensus 105 Kl~faF~vYD~~~~G~I~reel~~i 129 (187)
T KOG0034|consen 105 KLRFAFRVYDLDGDGFISREELKQI 129 (187)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHH
Confidence 6666788888888999999999876
No 67
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=79.13 E-value=2.2 Score=34.25 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
+-||..|+..+-..|.+++ |++|+++..|+...
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~ 43 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDA 43 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHH
Confidence 5789999999999999999 78999998877654
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=77.16 E-value=2.9 Score=31.90 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=16.5
Q ss_pred HHHHHhhhCCCCCCccCHHHhc
Q 034861 32 LYQRFCQLDRNAKGFISADEFL 53 (81)
Q Consensus 32 l~~rF~~ld~d~~G~l~~~ef~ 53 (81)
+...|+..|+|++|.|+.+||.
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHH
Confidence 4455666788888888888885
No 69
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=75.28 E-value=3.8 Score=31.22 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..+.+|+...-.-|..+|.|++|.|+.+||..+
T Consensus 350 ~Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~ 382 (391)
T PRK12309 350 FITREEWLGSDAVFDALDLNHDGKITPEEMRAG 382 (391)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHH
Confidence 457778766777899999999999999999864
No 70
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=74.93 E-value=6.5 Score=23.20 Aligned_cols=69 Identities=9% Similarity=0.181 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhhcCCC--CHHHHHHHHHHHhhh-CCCCCCccCHHHhccccCCCCChhHHHHHHHhHHHHHhhccC
Q 034861 7 MLTQYDIEEVQQHCHNLF--SQQEIVSLYQRFCQL-DRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLMLIWWGFRN 81 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~F--s~~EI~~l~~rF~~l-d~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~~~~~~~~ 81 (81)
.++++|.+.+.+- .- +++.=..+...-... ..++.+.++.++..++-. +.-+..+-++|+-|.-||+-|
T Consensus 14 ~l~~~E~~~~~e~---~~~~~p~~Yl~iRn~il~~w~~n~~~~lt~~~~~~~i~---~~d~~~~~ri~~FL~~~G~IN 85 (86)
T PF04433_consen 14 KLSEIEKQLCPEF---FIGKTPEQYLKIRNTILAEWRKNPNKYLTKTDARKLIK---GIDVNKIRRIYDFLERWGLIN 85 (86)
T ss_dssp SS-HHHHHHCHHC---TTSCHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHTT---SSSHHHHHHHHHHHHHTTSSS
T ss_pred cCCHHHHHHhHHH---hccCChHHHHHHHHHHHHHHHHCCCCcccHHHHHHHcc---ccCHHHHHHHHHHHHHcCccC
Confidence 5777776555553 22 233222222221111 223478999999987544 334577888899999999765
No 71
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=74.77 E-value=4.7 Score=25.39 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhccccC
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLSVPE 57 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~ 57 (81)
......-+.=.|.+||.|++|.|++.|+..|-.
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 444555566679999999999999999998754
No 72
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=74.12 E-value=3.7 Score=29.24 Aligned_cols=43 Identities=23% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhCCCCCCccCHHHhccccC-CCCChhHHHHHHHh
Q 034861 29 IVSLYQRFCQLDRNAKGFISADEFLSVPE-FAMNPLSQVVFQNQ 71 (81)
Q Consensus 29 I~~l~~rF~~ld~d~~G~l~~~ef~~ip~-l~~nPf~~ri~~~F 71 (81)
--.+..-|++.|.|.+|.|+.+|+..-+. +..+||-.+-|++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~Tcrlm 99 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLM 99 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHH
Confidence 34567788999999999999999988665 67788777666553
No 73
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=73.12 E-value=4.5 Score=27.76 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
|..||.+.++.|. -|.+|.|+..+|+.+
T Consensus 104 t~eEi~~afrl~D---~D~~Gkis~~~lkrv 131 (172)
T KOG0028|consen 104 TKEEIKKAFRLFD---DDKTGKISQRNLKRV 131 (172)
T ss_pred cHHHHHHHHHccc---ccCCCCcCHHHHHHH
Confidence 5667766655554 444888998888876
No 74
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=68.55 E-value=9.5 Score=27.17 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=35.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHH-hccccC-CCCChhHHHHHHHh
Q 034861 16 VQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADE-FLSVPE-FAMNPLSQVVFQNQ 71 (81)
Q Consensus 16 l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~e-f~~ip~-l~~nPf~~ri~~~F 71 (81)
|... +|++++|..+.+.|+.+.. + .++.+| +.++.+ ...+|..+.+++-+
T Consensus 195 l~r~---g~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 246 (255)
T PRK12461 195 LRRR---GFSSRAIRALKRAYKIIYR--S-GLSVQQAVAELELQQFESPEVEELIDFI 246 (255)
T ss_pred hhhc---CCCHHHHHHHHHHHHHHHh--c-CCCHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4555 9999999999999999985 3 345544 334533 45688877776654
No 75
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=67.52 E-value=5.1 Score=29.65 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHH----------------HhhhCCCCCCccCHHHhc
Q 034861 23 LFSQQEIVSLYQR----------------FCQLDRNAKGFISADEFL 53 (81)
Q Consensus 23 ~Fs~~EI~~l~~r----------------F~~ld~d~~G~l~~~ef~ 53 (81)
..|.+|++||... |...|||++|.|+-+|+.
T Consensus 117 kisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 117 KISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 5677787777654 777899999999988875
No 76
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=67.48 E-value=35 Score=23.05 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhhc-------CCCCHHHHHHHHHHHhh-------------hCCCCCCccCHHHhccccC--CCCChhH
Q 034861 7 MLTQYDIEEVQQHCH-------NLFSQQEIVSLYQRFCQ-------------LDRNAKGFISADEFLSVPE--FAMNPLS 64 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~-------T~Fs~~EI~~l~~rF~~-------------ld~d~~G~l~~~ef~~ip~--l~~nPf~ 64 (81)
.+++++++++.+... ...++.|+..+||-|-. ++. ++|.|+..+|.++.. +..++-.
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~ 91 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE 91 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcH
Confidence 566666666655420 23344666666653221 222 347777777777533 2344445
Q ss_pred HHHHHHhH
Q 034861 65 QVVFQNQL 72 (81)
Q Consensus 65 ~ri~~~F~ 72 (81)
+.+..+|.
T Consensus 92 Eel~~aF~ 99 (160)
T COG5126 92 EELREAFK 99 (160)
T ss_pred HHHHHHHH
Confidence 55555553
No 77
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=67.19 E-value=6.5 Score=26.85 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHH
Q 034861 16 VQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISAD 50 (81)
Q Consensus 16 l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ 50 (81)
++.. |.+|++++.+||+.-+--.| ++|.++.+
T Consensus 29 l~~e--t~Ls~~rl~~Lykel~G~sp-pkG~lP~S 60 (175)
T PF05280_consen 29 LESE--TGLSRERLRRLYKELHGVSP-PKGMLPFS 60 (175)
T ss_dssp HHHH--SSS-HHHHHHHHHHHCSS-----S-----
T ss_pred HHHH--HCCCHHHHHHHHHHHcCCCC-CCCCCCCc
Confidence 4455 69999999999999876655 58877653
No 78
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=67.15 E-value=6.5 Score=21.20 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCC
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKG 45 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G 45 (81)
-||++||.+|.-. .-.+++++.|-+.=-....+.+|
T Consensus 2 fLT~~El~elTG~---k~~~~Q~~~L~~~Gi~~~~~~~G 37 (47)
T PF13986_consen 2 FLTDEELQELTGY---KRPSKQIRWLRRNGIPFVVRADG 37 (47)
T ss_pred CCCHHHHHHHHCC---CCHHHHHHHHHHCCCeeEECCCC
Confidence 3788988888775 55667777665553333333455
No 79
>PRK04387 hypothetical protein; Provisional
Probab=66.76 E-value=12 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHhhhCCCC
Q 034861 23 LFSQQEIVSLYQRFCQLDRNA 43 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~ 43 (81)
+.+++++...|++|+++-|.+
T Consensus 33 gv~re~ll~~Y~~FK~VVpsK 53 (90)
T PRK04387 33 GVDAEELLDAYRRFKEIVPSK 53 (90)
T ss_pred CCcHHHHHHHHHHHHHhcCCh
Confidence 789999999999999999864
No 80
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=65.48 E-value=12 Score=18.56 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=20.8
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 034861 9 TQYDIEEVQQHCHNLFSQQEIVSLYQRFC 37 (81)
Q Consensus 9 s~e~l~~l~~~t~T~Fs~~EI~~l~~rF~ 37 (81)
+++.|++|.+. +|++++.++..+...
T Consensus 2 ~~~~v~~L~~m---Gf~~~~~~~AL~~~~ 27 (37)
T PF00627_consen 2 DEEKVQQLMEM---GFSREQAREALRACN 27 (37)
T ss_dssp HHHHHHHHHHH---TS-HHHHHHHHHHTT
T ss_pred CHHHHHHHHHc---CCCHHHHHHHHHHcC
Confidence 46789999998 999999998887654
No 81
>PRK12722 transcriptional activator FlhC; Provisional
Probab=64.93 E-value=11 Score=26.20 Aligned_cols=34 Identities=15% Similarity=0.451 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCH
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISA 49 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~ 49 (81)
+.-|+.. |.+|++++.++|+.-+--.| ++|.++.
T Consensus 26 ~q~lese--t~Ls~~rl~~Lyke~~G~sp-PkG~lP~ 59 (187)
T PRK12722 26 LQVLESE--TQLSRERLIKLYKELRGVSP-PKGMLPF 59 (187)
T ss_pred HHHHHHH--HCcCHHHHHHHHHHHcCCCC-CCCCCCC
Confidence 3446677 69999999999999987776 4887763
No 82
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=64.79 E-value=17 Score=28.71 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH-------------------------------------HhhhCCCCCCccCH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR-------------------------------------FCQLDRNAKGFISA 49 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r-------------------------------------F~~ld~d~~G~l~~ 49 (81)
.+++++|..+... -++..=|+|++.. |+=+|-+++|.|+.
T Consensus 294 lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~ 370 (493)
T KOG2562|consen 294 LIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTL 370 (493)
T ss_pred ccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccH
Confidence 5788888888887 5677788888871 55566667888888
Q ss_pred HHhccc----------cCCCCChhHHHHHHHhHHH
Q 034861 50 DEFLSV----------PEFAMNPLSQVVFQNQLML 74 (81)
Q Consensus 50 ~ef~~i----------p~l~~nPf~~ri~~~F~~~ 74 (81)
.|+..+ -....+||.+-++..+|..
T Consensus 371 ~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMv 405 (493)
T KOG2562|consen 371 NELRYFYEEQLQRMECMGQEALPFEDALCQIRDMV 405 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHh
Confidence 876543 3346778888888888764
No 83
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=64.03 E-value=9.7 Score=29.25 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCCCccCHHHhccc---cCCCCChhHHHHHHHh
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAKGFISADEFLSV---PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~G~l~~~ef~~i---p~l~~nPf~~ri~~~F 71 (81)
.=|.+||++.||+- +++-||+++ +.+.|..| -++-.+|-.+++.+.|
T Consensus 39 ~As~~eIKkAYrkla~k~HPDk~~--~~e~F~~i~~AYevLsD~~kR~~YD~~ 89 (421)
T PTZ00037 39 DCTTSEIKKAYRKLAIKHHPDKGG--DPEKFKEISRAYEVLSDPEKRKIYDEY 89 (421)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHHHhccHHHHHHHhhh
Confidence 45899999999998 557888765 35666665 3444556555555543
No 84
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=63.53 E-value=7.2 Score=22.83 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
.++++....+.+.|..+- ++.|+++||.+
T Consensus 21 ~l~~~~~~~l~~~Y~~~k---~~kIsR~~fvr 49 (70)
T PF12174_consen 21 HLPPSKMDLLQKHYEEFK---KKKISREEFVR 49 (70)
T ss_pred HCCHHHHHHHHHHHHHHH---HCCCCHHHHHH
Confidence 556666555555555443 67999999986
No 85
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=61.37 E-value=11 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHhhhCC
Q 034861 14 EEVQQHCHNLFSQQEIVSLYQRFCQLDR 41 (81)
Q Consensus 14 ~~l~~~t~T~Fs~~EI~~l~~rF~~ld~ 41 (81)
|-|-.. +||++||..|.+.|+.+-.
T Consensus 4 DRLl~~---GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 4 DRLLSA---GFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred hHHHHc---CCCHHHHHHHHHHHHHHhc
Confidence 344544 9999999999999999765
No 86
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=60.04 E-value=26 Score=22.25 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.0
Q ss_pred CCCChhHHHHHHHhH
Q 034861 58 FAMNPLSQVVFQNQL 72 (81)
Q Consensus 58 l~~nPf~~ri~~~F~ 72 (81)
+.++|..+|+|++|-
T Consensus 76 ~~Stp~~ekvFKVfk 90 (105)
T PRK14102 76 LTSTPLEQKLFKVFQ 90 (105)
T ss_pred ccCChhhhhhHHHhh
Confidence 378999999999985
No 87
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=59.95 E-value=20 Score=17.56 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
++.++.|... +|+++++.+..+....
T Consensus 2 ~~~v~~L~~m---Gf~~~~~~~AL~~~~~ 27 (38)
T cd00194 2 EEKLEQLLEM---GFSREEARKALRATNN 27 (38)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHhCC
Confidence 5678888887 9999999998887653
No 88
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=58.51 E-value=10 Score=20.08 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 28 EIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 28 EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
-|...|.+|..-+.| ...|++.||..+
T Consensus 7 ~iI~vFhkYa~~~Gd-~~~Lsk~Elk~L 33 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGD-KDTLSKKELKEL 33 (44)
T ss_dssp HHHHHHHHHHTSSSS-TTSEEHHHHHHH
T ss_pred HHHHHHHHHhccCCC-CCeEcHHHHHHH
Confidence 355556666555554 459999999875
No 89
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=56.92 E-value=30 Score=22.20 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=13.4
Q ss_pred CCCChhHHHHHHHhHH
Q 034861 58 FAMNPLSQVVFQNQLM 73 (81)
Q Consensus 58 l~~nPf~~ri~~~F~~ 73 (81)
+.++|+.+|+|++|-.
T Consensus 78 ~~Stp~~ekvFKVfkd 93 (113)
T PRK00810 78 VASSPLDQRVFKVLKD 93 (113)
T ss_pred ccCCHhHHHHHHHHHh
Confidence 4789999999999843
No 90
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=56.68 E-value=23 Score=17.25 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQRF 36 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~rF 36 (81)
++.+++|... +|+++++.+..+.-
T Consensus 2 ~~~v~~L~~m---Gf~~~~a~~aL~~~ 25 (37)
T smart00165 2 EEKIDQLLEM---GFSREEALKALRAA 25 (37)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHh
Confidence 5678888887 99999999887653
No 91
>PF13708 Methyltransf_27: Methyltransferase domain
Probab=55.92 E-value=12 Score=25.54 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc-cCC---CCChhHHHHHHHhHHHHHhhc
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV-PEF---AMNPLSQVVFQNQLMLIWWGF 79 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i-p~l---~~nPf~~ri~~~F~~~~~~~~ 79 (81)
+.+|.+..++|++.+...++ -.+|.+-+.+. -.+ ...-|.+.|+++|+.|- |++
T Consensus 22 ~~m~~~~r~~~~~~l~~~~~---p~ft~~NI~~t~~~l~~~r~~~~~~~v~~vF~~Ls-~~y 79 (194)
T PF13708_consen 22 SFMSAQARDEWDKQLEEDDP---PEFTEENIYSTFEQLHANRGEIFERGVIDVFRSLS-WDY 79 (194)
T ss_pred hHhCHHHHHHHHHHHhcCCC---CCccHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc-hhh
Confidence 47889999999999996643 26777776653 333 44559999999999984 444
No 92
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=55.14 E-value=17 Score=26.59 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=34.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHh-ccc-cCCCCChhHHHHHHHh
Q 034861 16 VQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEF-LSV-PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 16 l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef-~~i-p~l~~nPf~~ri~~~F 71 (81)
|+.. .|++++|..|.+-|+.+.. + ..+.+|- ..+ .+...+|.+..+++-+
T Consensus 200 lkRr---gf~~e~i~alr~ayk~lfr--~-~~~~~e~~~~i~~~~~~~~~v~~~~dFi 251 (260)
T COG1043 200 LKRR---GFSREEIHALRKAYKLLFR--S-GLTLREALEEIAEEYADNPEVKEFIDFI 251 (260)
T ss_pred eecc---CCCHHHHHHHHHHHHHHee--C-CCCHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4555 9999999999999999986 3 2333333 333 3457788777776654
No 93
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=53.05 E-value=16 Score=29.66 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
|.+|.+=++.+-.-|.+.|.|++|.++..|+..+
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~L 340 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDL 340 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHH
Confidence 6889999999999999999999999999999875
No 94
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.28 E-value=33 Score=21.17 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHhhhCCCC
Q 034861 23 LFSQQEIVSLYQRFCQLDRNA 43 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~ 43 (81)
+.+++++..-|++|+++.|.+
T Consensus 33 gv~~~~ll~~Yr~FK~IVPsK 53 (90)
T COG4476 33 GVDAEDLLGSYRRFKEIVPSK 53 (90)
T ss_pred cccHHHHHHHHHHHHHhcCch
Confidence 779999999999999999854
No 95
>PRK14288 chaperone protein DnaJ; Provisional
Probab=51.71 E-value=21 Score=26.79 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCCC--ccCHHHhccc---cCCCCChhHHHHHHH
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAKG--FISADEFLSV---PEFAMNPLSQVVFQN 70 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~G--~l~~~ef~~i---p~l~~nPf~~ri~~~ 70 (81)
.-|.+||++.||+. +++-||++. .-..+.|..| -++=.+|-.+++.+.
T Consensus 14 ~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~ 67 (369)
T PRK14288 14 HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDR 67 (369)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55899999999998 456777542 1123445554 233445555555544
No 96
>PRK12860 transcriptional activator FlhC; Provisional
Probab=51.02 E-value=26 Score=24.35 Aligned_cols=34 Identities=15% Similarity=0.425 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCH
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISA 49 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~ 49 (81)
+.-|+.. |.+|++++.++|+.=+-..| ++|.++.
T Consensus 26 lq~lese--t~Ls~~rl~~Lyke~~G~Sp-PkG~lP~ 59 (189)
T PRK12860 26 LQVLESE--TTLSRDRLIRLYKEVRGVSP-PKGMLPF 59 (189)
T ss_pred HHHHHHH--HCCCHHHHHHHHHHHcCCCC-CCCCCCC
Confidence 3446667 69999999999998776665 4887775
No 97
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=50.62 E-value=37 Score=17.85 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
.|-++.|... +|+++|+.+.-++-..
T Consensus 4 ~d~~~AL~~L---Gy~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 4 EDALEALISL---GYSKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHHHT---TS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHhhc
Confidence 4556777887 9999999999999887
No 98
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=50.41 E-value=81 Score=25.26 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---------CCC--ccCHHHhccc--------------cCCCCCh
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---------AKG--FISADEFLSV--------------PEFAMNP 62 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---------~~G--~l~~~ef~~i--------------p~l~~nP 62 (81)
+|++++++|... +.|.++|++=.+.|++-.|- ++| .++.+|.... --+.++.
T Consensus 1 Ft~~D~~qi~~~---Gis~e~v~~Ql~~F~~G~P~l~l~~aAti~~GI~~l~~~e~~~~~~~~~~~~~~~~i~KFVPASG 77 (513)
T PF14134_consen 1 FTEKDLKQIEEK---GISEEQVEEQLEIFKKGFPFLKLVRAATIGDGIIRLSEEEQEKYIDFFEKKKQNLRIVKFVPASG 77 (513)
T ss_pred CCHHHHHHHHHc---CCCHHHHHHHHHHHhcCCCccccccccccCCCceeCCHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 478999999998 99999999999999985443 355 4555544332 1123566
Q ss_pred hHHHHHHHhHHH
Q 034861 63 LSQVVFQNQLML 74 (81)
Q Consensus 63 f~~ri~~~F~~~ 74 (81)
.|.|+|+.....
T Consensus 78 AAsRMFK~Lf~F 89 (513)
T PF14134_consen 78 AASRMFKDLFEF 89 (513)
T ss_pred HHHHHHHHHHHH
Confidence 789999876543
No 99
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=50.13 E-value=17 Score=24.97 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc-ccCCCCCh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS-VPEFAMNP 62 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~-ip~l~~nP 62 (81)
+|++..++.|...- +=.-+.|...-++.+.+|-+ ..++++++|.+ +|+-..||
T Consensus 123 kl~~k~id~L~~~l--r~~~~~Ir~~Er~i~~l~v~-~~gmpR~~Fi~~f~gnEtn~ 176 (211)
T PF04546_consen 123 KLSPKQIDRLVEQL--REIVERIRQQERRIMRLCVR-RAGMPRKEFIKSFPGNETNP 176 (211)
T ss_dssp EE-HHHHHHHCHHH--HCCCHHHHHHHHHHHHCCCT-TTT--HHHCCCCCTTT-SSC
T ss_pred ccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHccCcccHH
Confidence 35555566554442 33455666677778888853 67999999987 56544444
No 100
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=49.89 E-value=33 Score=20.50 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFC 37 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~ 37 (81)
.++++|... --||++||..+-++=.
T Consensus 6 pele~l~~~--~lFt~~EI~~IvkkR~ 30 (83)
T PF08640_consen 6 PELEDLERK--GLFTKEEIREIVKKRR 30 (83)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 468999988 4999999999987743
No 101
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=49.21 E-value=23 Score=25.75 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHH
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQ 69 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~ 69 (81)
.+|-.|++.+.+-+..++.| +|+++..++..--.++.+|..+++-+
T Consensus 176 tLSySEleAv~~IL~~L~~~-egrlse~eLAerlGVSRs~ireAlrk 221 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDGN-EGLLVASKIADRVGITRSVIVNALRK 221 (251)
T ss_pred hccHhHHHHHHHHHHHhccc-cccccHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999863 58999999999888999998777644
No 102
>KOG3956 consensus Alpha 2-macroglobulin receptor-associated protein [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms; Lipid transport and metabolism; Defense mechanisms]
Probab=48.91 E-value=31 Score=25.90 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHH--HhhcCCCCHHHHHHHHHHHhhh
Q 034861 6 SMLTQYDIEEVQ--QHCHNLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 6 S~ls~e~l~~l~--~~t~T~Fs~~EI~~l~~rF~~l 39 (81)
+.++...|+.|. +.+ ++||.+|+..|++.|...
T Consensus 150 ~~f~D~~L~kLW~kA~~-sgFs~eEL~~L~~Ef~hh 184 (359)
T KOG3956|consen 150 GKFTDQNLQKLWSKAQN-SGFSQEELNALHGEFKHH 184 (359)
T ss_pred cccCchhHHHHHHHHhc-cCCCHHHHHHHHHHHHHH
Confidence 467777788883 343 699999999999999753
No 103
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=48.33 E-value=21 Score=21.49 Aligned_cols=51 Identities=10% Similarity=-0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhccc------cCCCCChh
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLSV------PEFAMNPL 63 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~i------p~l~~nPf 63 (81)
|-++.+.+. |++|++++..+...|...-.+ ..+.+....|..+ |....||.
T Consensus 5 eli~~ia~~--~~~s~~~~~~~v~~~~~~i~~~L~~~~~v~l~gfG~F~v~~r~aR~grNP~ 64 (90)
T PRK10664 5 QLIDKIAAG--ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQ 64 (90)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhCCCEEEECCcEEEEEEEeCCccccCCC
Confidence 456778887 699999999999999885322 2456666666554 44455664
No 104
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=48.22 E-value=56 Score=19.44 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=18.7
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHhhh
Q 034861 9 TQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 9 s~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~l 39 (81)
+++++..+...+-=.++.+|+.++-..|..+
T Consensus 2 ~~~~v~~lA~La~L~l~eee~~~~~~~l~~i 32 (93)
T TIGR00135 2 SDEEVKHLAKLARLELSEEEAESFAGDLDKI 32 (93)
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4566666655532266777777766666553
No 105
>PRK14561 hypothetical protein; Provisional
Probab=47.79 E-value=13 Score=25.17 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
+++++||.++-+++..+....+|.|+..|+..
T Consensus 133 ~~~K~eI~~la~~l~~~~~~~~~~~~~~~~~~ 164 (194)
T PRK14561 133 GFGRKTIDRLVERLFEIEEGESEEIPKSDYET 164 (194)
T ss_pred CCCHHHHHHHHHhhEEEEeccCCCcCccchHH
Confidence 78999999999999999888899999877653
No 106
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=46.97 E-value=32 Score=19.16 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCC
Q 034861 9 TQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMN 61 (81)
Q Consensus 9 s~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~n 61 (81)
+....++|+.. .+++++..+++.+-=.+.. +.-+.+|+..++.+...
T Consensus 9 N~as~~eL~~l--pgi~~~~A~~Iv~~R~~~G----~f~s~~dL~~v~gi~~~ 55 (65)
T PF12836_consen 9 NTASAEELQAL--PGIGPKQAKAIVEYREKNG----PFKSLEDLKEVPGIGPK 55 (65)
T ss_dssp TTS-HHHHHTS--TT--HHHHHHHHHHHHHH-----S-SSGGGGGGSTT--HH
T ss_pred ccCCHHHHHHc--CCCCHHHHHHHHHHHHhCc----CCCCHHHHhhCCCCCHH
Confidence 34456677776 5888888887765433332 26678999998887543
No 107
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=46.80 E-value=15 Score=24.74 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc-cCCCCCh
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV-PEFAMNP 62 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i-p~l~~nP 62 (81)
+.|+++++..+..-|.-.|...+|+|+.+..-.+ ..+..||
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP 44 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP 44 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC
Confidence 3678888888888888888888999998877653 3444555
No 108
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=46.00 E-value=52 Score=22.60 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHhh-hCCCCCCccCHHHhccc
Q 034861 23 LFSQQEIVSLYQRFCQ-LDRNAKGFISADEFLSV 55 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~-ld~d~~G~l~~~ef~~i 55 (81)
.+|..|+..+-.+-.. .|-|++|+|+..||..+
T Consensus 141 eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~ 174 (189)
T KOG0038|consen 141 ELSDEEVELICEKVIEEADLDGDGKLSFAEFEHV 174 (189)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 7889999888877655 57788999999999864
No 109
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=45.30 E-value=35 Score=21.88 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHH------HHHHhhhCC
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSL------YQRFCQLDR 41 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l------~~rF~~ld~ 41 (81)
-+++|++++..=- |+|+.++|+++ |+.|-.-.|
T Consensus 23 Rt~~Evd~vi~WL-TGy~~~~l~~~~~~~~~~~~FF~~AP 61 (111)
T PF09966_consen 23 RTKEEVDQVIRWL-TGYDQEELQAQIESKVTFETFFAQAP 61 (111)
T ss_dssp --HHHHHHHHHHH-H---HHHHHHHTTS--BHHHHHHT-S
T ss_pred CCHHHHHHHHHHH-hcCCHHHHHHHHHcCCCHHHHHHHcc
Confidence 4788999997765 89999999998 777776654
No 110
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=45.14 E-value=53 Score=18.51 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFC 37 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~ 37 (81)
++.++-++++... +|+++.|...+++..
T Consensus 7 Gi~~~lVd~F~~m---GF~~dkVvevlrrlg 34 (55)
T PF09288_consen 7 GIDKDLVDQFENM---GFERDKVVEVLRRLG 34 (55)
T ss_dssp --SHHHHHHHHHH---T--HHHHHHHHHHS-
T ss_pred CCCHHHHHHHHHc---CCcHHHHHHHHHHhC
Confidence 5788999999999 999999999988865
No 111
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=45.05 E-value=55 Score=22.22 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhc--cccCCCCChhHHHHHHHhHHH
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFL--SVPEFAMNPLSQVVFQNQLML 74 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~--~ip~l~~nPf~~ri~~~F~~~ 74 (81)
..++++.+. ..++.+++.++.+..++++|-+=|.=+..|-+ ++......+.+.+|++-....
T Consensus 53 ~~~~eia~~--l~~~~~~v~~~l~~lQ~leP~GigAr~l~EcLllQl~~~~~~~~~~~il~~~l~~ 116 (194)
T PF04963_consen 53 ESLEEIAEE--LGVSEEEVEKALELLQSLEPAGIGARDLQECLLLQLERKGPPDLAYRILENHLEL 116 (194)
T ss_dssp S-HHHHHHH--CTS-HHHHHHHHHHHHTTSS--TTTS-TTHHHHHHHHHS-S--TTHHHHHHHHHH
T ss_pred CCHHHHHHH--hCCCHHHHHHHHHHHHcCCCCccCcCCHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 567888888 48999999999999999999554444444443 233322255666776655443
No 112
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.96 E-value=32 Score=24.97 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
.|+++-|++|++|+ +.+||++.-++|.+
T Consensus 181 ~lN~~lLd~Ya~C~----~s~ev~~~qn~~Le 208 (263)
T KOG3154|consen 181 ELNKDLLDEYAKCA----SSAEVVEVQNEFLE 208 (263)
T ss_pred HHhHHHHHHHHhhC----CHHHHHHHHHHHHH
Confidence 48899999999997 99999999999987
No 113
>PHA03102 Small T antigen; Reviewed
Probab=44.79 E-value=39 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=18.1
Q ss_pred CC--CHHHHHHHHHHH-hhhCCCCCC
Q 034861 23 LF--SQQEIVSLYQRF-CQLDRNAKG 45 (81)
Q Consensus 23 ~F--s~~EI~~l~~rF-~~ld~d~~G 45 (81)
.- |..||++.|++. +..-||+.|
T Consensus 16 ~A~~s~~eIKkAYr~la~~~HPDkgg 41 (153)
T PHA03102 16 SAWGNLPLMRKAYLRKCLEFHPDKGG 41 (153)
T ss_pred CCCCCHHHHHHHHHHHHHHHCcCCCc
Confidence 45 889999999998 456888754
No 114
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=44.53 E-value=39 Score=16.37 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 27 QEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 27 ~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
++|.+|...+. +|-||.+||.+
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~ 24 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHH
Confidence 34555555443 78899998864
No 115
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=44.28 E-value=31 Score=18.64 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHhhh-CCCCCCc
Q 034861 23 LFSQQEIVSLYQRFCQL-DRNAKGF 46 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~l-d~d~~G~ 46 (81)
.-+.+||++.|++.... .||+.+.
T Consensus 11 ~~~~~eik~~y~~l~~~~HPD~~~~ 35 (64)
T PF00226_consen 11 DASDEEIKKAYRRLSKQYHPDKNSG 35 (64)
T ss_dssp TSSHHHHHHHHHHHHHHTSTTTGTS
T ss_pred CCCHHHHHHHHHhhhhccccccchh
Confidence 55899999999999885 6765433
No 116
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=43.80 E-value=17 Score=26.93 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 034861 22 NLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~l 39 (81)
|-||..+|..|.++|.+.
T Consensus 177 TaFT~~Ql~~LEkrF~~Q 194 (309)
T KOG0488|consen 177 TAFSDHQLFELEKRFEKQ 194 (309)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 699999999999999974
No 117
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=43.79 E-value=81 Score=19.79 Aligned_cols=56 Identities=9% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCC--hhHHHHHHHhHH
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMN--PLSQVVFQNQLM 73 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~n--Pf~~ri~~~F~~ 73 (81)
+|+++.+... ..-+.++|.++.+.|.- --++..|+..|..-... -=++.|+++.+.
T Consensus 18 KEEi~~l~~~--~~~~~e~l~~i~r~f~g------~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~R 75 (99)
T PF13758_consen 18 KEEIEALPED--DDATREDLLRIRRDFGG------SLVTEKEIKEILGEGQGITRTREQVVDVLSR 75 (99)
T ss_pred HHHHHhcccc--CCCCHHHHHHHHHhcCc------ccccHHHHHHHhCCCCCCCcCHHHHHHHHHH
Confidence 4556666442 25589999999999862 25667788776544332 234666666543
No 118
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=43.68 E-value=28 Score=19.60 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHhhhC
Q 034861 22 NLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld 40 (81)
|.||++++++|.+-|...-
T Consensus 6 T~Ft~~Q~~~Le~~fe~~~ 24 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKLG 24 (58)
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 6999999999999998764
No 119
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=43.57 E-value=67 Score=22.08 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
+.++.|.++-..---+|+.+|+..+|+.+- +|..|.+....|..
T Consensus 118 I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p---~d~~G~~dy~~~~~ 161 (171)
T KOG0031|consen 118 IDEDYLRELLTTMGDRFTDEEVDEMYREAP---IDKKGNFDYKAFTY 161 (171)
T ss_pred cCHHHHHHHHHHhcccCCHHHHHHHHHhCC---cccCCceeHHHHHH
Confidence 445555444222113667777776666543 22356666666654
No 120
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=43.22 E-value=1.1e+02 Score=23.54 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc--cCC-CCCh-hHHHHHHHh
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV--PEF-AMNP-LSQVVFQNQ 71 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i--p~l-~~nP-f~~ri~~~F 71 (81)
+.++++... -+.+.++++++.+..++++|-+=|.=+..|.+.+ ... ..+| ++.+|++..
T Consensus 114 ~~~~eia~~--l~~~~~~ve~~l~~iq~leP~GIgAr~L~EcLllQl~~~~~~~~~~a~~il~~~ 176 (429)
T TIGR02395 114 IDLEEIADE--LEVSEEEVEKVLELIQRLDPAGVGARDLQECLLLQLERLDIDDPELAYNILLEH 176 (429)
T ss_pred CCHHHHHHH--cCCCHHHHHHHHHHHhcCCCCccCcCCHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 457778777 3899999999999999999966666666776543 332 2233 555665544
No 121
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=43.10 E-value=25 Score=21.34 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCCh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNP 62 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nP 62 (81)
.-++|++..+-+. -+|+.|+..+-.| ..+-.-.+...+..++.....++..-
T Consensus 15 ~~~~~~~~~~~~~---l~t~~e~~~Ls~R-~~I~~ll~~G~S~~eIA~~LgISrsT 66 (88)
T TIGR02531 15 LKNREECYRFFDD---IATINEIQSLAQR-LQVAKMLKQGKTYSDIEAETGASTAT 66 (88)
T ss_pred CCCHHHHHHHHHH---hCCHHHHHhhhHH-HHHHHHHHCCCCHHHHHHHHCcCHHH
Confidence 3467888888776 7899999999888 44321112235777777655554443
No 122
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=43.02 E-value=29 Score=17.94 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHhh-hCCCCCC
Q 034861 23 LFSQQEIVSLYQRFCQ-LDRNAKG 45 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~-ld~d~~G 45 (81)
.-+.++|++.|++-.+ ..||+.+
T Consensus 11 ~~~~~~ik~~y~~l~~~~HPD~~~ 34 (55)
T cd06257 11 DASDEEIKKAYRKLALKYHPDKNP 34 (55)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC
Confidence 5588999999988765 5676543
No 123
>PRK14279 chaperone protein DnaJ; Provisional
Probab=42.72 E-value=24 Score=26.67 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCCCc--cCHHHhccc---cCCCCChhHHHHHHHh
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAKGF--ISADEFLSV---PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~G~--l~~~ef~~i---p~l~~nPf~~ri~~~F 71 (81)
.-|.+||++.||+. +++.||++.. -..+.|..| -++-.+|-.+++.+.|
T Consensus 20 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 20 DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 45789999999999 5678876531 123455555 3344556566666554
No 124
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=42.54 E-value=75 Score=20.48 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHhhcCC----------CCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 7 MLTQYDIEEVQQHCHNL----------FSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~----------Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
.||+||+++|.+.. +. +++++|.++-+.+.+.-+ .+.++..|.+.
T Consensus 83 ~Ls~eEf~~L~~~~-~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~--~~~lt~~e~Lr 137 (141)
T PF12419_consen 83 ELSEEEFEQLVEQK-RPLVRFRGRWVELDPEELRRALAFLEKAPK--GEKLTLAEALR 137 (141)
T ss_pred ECCHHHHHHHHHcC-CCeEEECCEEEEECHHHHHHHHHHHHhccc--cCCCCHHHHHH
Confidence 58999999998874 43 479999999999988553 33577777654
No 125
>PF15533 Toxin_54: Putative toxin 54
Probab=42.10 E-value=52 Score=19.22 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCHHHHHHH
Q 034861 4 ASSMLTQYDIEEVQQHCHNLFSQQEIVSL 32 (81)
Q Consensus 4 ~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l 32 (81)
+...|++-+++.|+.. +++.++++++
T Consensus 4 qdK~l~~~di~~Lk~~---G~d~H~lK~~ 29 (66)
T PF15533_consen 4 QDKLLTKGDIEKLKKN---GIDAHELKRL 29 (66)
T ss_pred cCcccCHhHHHHHHHc---CCcHHHHHhh
Confidence 3457899999999997 9999999984
No 126
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=41.65 E-value=57 Score=30.07 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=42.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc--------cC---CCCChhHHHHHHHhHH
Q 034861 16 VQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV--------PE---FAMNPLSQVVFQNQLM 73 (81)
Q Consensus 16 l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i--------p~---l~~nPf~~ri~~~F~~ 73 (81)
++..-+++.|.+.++..-=-|+-.|.+++|.|+..+|..+ |- ....|--+.+.++.|+
T Consensus 2239 Iqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP 2307 (2399)
T KOG0040|consen 2239 IQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDP 2307 (2399)
T ss_pred HHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCC
Confidence 4444346999999998888899899999999999999764 32 2345655666665543
No 127
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=41.49 E-value=76 Score=18.80 Aligned_cols=32 Identities=9% Similarity=0.262 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhh
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~l 39 (81)
++++++..|.+.+-=.++.+|+.++-+.|..+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~l~~i 34 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQLNKI 34 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 56777777776642266777777776666553
No 128
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=41.26 E-value=30 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHhhhCCC
Q 034861 23 LFSQQEIVSLYQRFCQLDRN 42 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d 42 (81)
+.+++++...|++|+++-|.
T Consensus 33 gV~r~~ll~~Y~~FK~VVps 52 (88)
T PF05256_consen 33 GVDREELLDAYRRFKKVVPS 52 (88)
T ss_dssp -EEHHHHHHHHHHHHHH---
T ss_pred cCcHHHHHHHHHHHHHHccc
Confidence 78999999999999999985
No 129
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=40.97 E-value=1e+02 Score=20.22 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCC---HHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCC
Q 034861 7 MLT---QYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKG 45 (81)
Q Consensus 7 ~ls---~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G 45 (81)
+|. ++|+..+++.-.-.|++..+.+.-++|.+-.-+++|
T Consensus 81 GLD~~ak~EI~~IM~~~~v~FDeARliy~~~~f~~NgI~pdG 122 (128)
T PF09435_consen 81 GLDDAAKREIRRIMKRRRVNFDEARLIYTERRFKKNGIGPDG 122 (128)
T ss_pred CcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCC
Confidence 466 578888877643478888888888999985444455
No 130
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=40.96 E-value=14 Score=25.56 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 6 SMLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
|+|+.++++-|++.--|++|+++|.+....
T Consensus 3 s~l~~~QieLLqrL~~SG~TK~~ii~ALe~ 32 (180)
T PF04814_consen 3 SKLTIEQIELLQRLRRSGMTKEEIIHALET 32 (180)
T ss_dssp HHHHHHHHHHHHHHHHCT--HHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 467788888887665579999999988764
No 131
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=40.72 E-value=11 Score=21.77 Aligned_cols=51 Identities=14% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHh--hcCCCCHHHHHHHHHHHhhhCC-CCCCccCHHHhcccc
Q 034861 6 SMLTQYDIEEVQQH--CHNLFSQQEIVSLYQRFCQLDR-NAKGFISADEFLSVP 56 (81)
Q Consensus 6 S~ls~e~l~~l~~~--t~T~Fs~~EI~~l~~rF~~ld~-d~~G~l~~~ef~~ip 56 (81)
..++.+++...... --+..+.+++.++.++|..... ...+.++.++|....
T Consensus 14 ~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 14 EYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp SSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 35777777766421 0036799999999999976531 136899999999853
No 132
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.65 E-value=39 Score=22.29 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHhh-hCCCCCCccCHHHhcc
Q 034861 25 SQQEIVSLYQRFCQ-LDRNAKGFISADEFLS 54 (81)
Q Consensus 25 s~~EI~~l~~rF~~-ld~d~~G~l~~~ef~~ 54 (81)
|..|++++-..-.+ .|.|++|.|..-||++
T Consensus 111 sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 111 SEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 56778877776554 5677889999988864
No 133
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=38.86 E-value=79 Score=19.90 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=13.3
Q ss_pred CCCChhHHHHHHHhHH
Q 034861 58 FAMNPLSQVVFQNQLM 73 (81)
Q Consensus 58 l~~nPf~~ri~~~F~~ 73 (81)
+.++|..+++|++|-.
T Consensus 75 v~S~p~~ekvFkVf~~ 90 (105)
T PF03206_consen 75 VTSTPLEEKVFKVFKD 90 (105)
T ss_pred hcCChhhhHHHHHHHh
Confidence 3679999999999854
No 134
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=38.17 E-value=39 Score=22.79 Aligned_cols=32 Identities=13% Similarity=0.408 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCc
Q 034861 14 EEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGF 46 (81)
Q Consensus 14 ~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~ 46 (81)
+.|...- |.|++++|+.-+..|++..+++..+
T Consensus 44 ~~l~d~d-~~~~~~~ie~~~~kfck~~k~ke~r 75 (178)
T KOG4154|consen 44 DDLDDRD-TKFDPAQIENAFIKFCKAAKGKEHR 75 (178)
T ss_pred Hhhcccc-ccCCHHHHHHHHHHHHHHhcCCcce
Confidence 3444453 6999999999999999988776543
No 135
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=37.93 E-value=65 Score=20.88 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhhc-CCCCHHHHHHHHHHHhh
Q 034861 7 MLTQYDIEEVQQHCH-NLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~-T~Fs~~EI~~l~~rF~~ 38 (81)
.++.|.+-.|....- -.+|++||..+|+++..
T Consensus 50 eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~ 82 (122)
T PF06648_consen 50 EIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYN 82 (122)
T ss_pred CCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHc
Confidence 467777777776520 16888888888888875
No 136
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.65 E-value=80 Score=20.81 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHHH-HhhhCCCCCC
Q 034861 6 SMLTQYDIEEVQQHCHNLFSQQEIVSLYQR-FCQLDRNAKG 45 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r-F~~ld~d~~G 45 (81)
+++|.+|-.++-..+ +.++++||.+=|.. |.--|+.+-|
T Consensus 54 ~~iTlqEa~qILnV~-~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 54 GKITLQEAQQILNVK-EPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred ccccHHHHhhHhCCC-CCCCHHHHHHHHHHHHhccCcccCc
Confidence 468888888888876 69999999987765 5555665334
No 137
>cd07971 OBF_DNA_ligase_LigD The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigD is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of Mycobacterium tuberculosis LigD and similar ba
Probab=37.20 E-value=35 Score=21.07 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHhhhC
Q 034861 22 NLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld 40 (81)
|+||.++++.|++++..+.
T Consensus 41 tG~s~~~~~~l~~~l~~~~ 59 (115)
T cd07971 41 TGFSAATLRELRERLAPLE 59 (115)
T ss_pred CCCCHHHHHHHHHHhhccc
Confidence 7999999999999998875
No 138
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=37.04 E-value=88 Score=22.06 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccC--HHHhccccCC
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFIS--ADEFLSVPEF 58 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~--~~ef~~ip~l 58 (81)
.+.+++|+++.+. ++|-+..-+++.+-=+.+.-+-+|.++ ++|+.++|++
T Consensus 66 ~a~~~~l~~~I~~--iGlyr~KAk~I~~~~~~l~e~~~g~vP~~~~eL~~LPGV 117 (211)
T COG0177 66 NADEEELEELIKS--IGLYRNKAKNIKELARILLEKFGGEVPDTREELLSLPGV 117 (211)
T ss_pred cCCHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHcCCCCCchHHHHHhCCCc
Confidence 4778999999998 588877766666665555433355444 6788888876
No 139
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.96 E-value=41 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.640 Sum_probs=25.1
Q ss_pred ccCHHHhccc---cCCCCChhHHHHHHHhHHHHHhh
Q 034861 46 FISADEFLSV---PEFAMNPLSQVVFQNQLMLIWWG 78 (81)
Q Consensus 46 ~l~~~ef~~i---p~l~~nPf~~ri~~~F~~~~~~~ 78 (81)
+++++|++.+ +.-.-.|+-.-|++.|... ||-
T Consensus 174 yvs~eelkel~~~~~~~~TPWfkli~~~~l~~-WW~ 208 (225)
T KOG0142|consen 174 YVSREELKELVAKASAGFTPWFKLISENFLFK-WWD 208 (225)
T ss_pred eecHHHHHHHHhccccCCChHHHHHHHHHHHH-HHh
Confidence 7888888876 3334569999999999887 884
No 140
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=36.86 E-value=30 Score=27.15 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
..+|. ++|+-|+++|.+.+|.|..+|+..
T Consensus 78 ~~~E~-~l~~~F~~iD~~hdG~i~~~Ei~~ 106 (463)
T KOG0036|consen 78 DNKEL-ELYRIFQSIDLEHDGKIDPNEIWR 106 (463)
T ss_pred HHhHH-HHHHHHhhhccccCCccCHHHHHH
Confidence 44443 588999999999999999988765
No 141
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.53 E-value=39 Score=25.86 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHhh-hCCCCCC--ccCHHHhccc---cCCCCChhHHHHHHHh
Q 034861 24 FSQQEIVSLYQRFCQ-LDRNAKG--FISADEFLSV---PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 24 Fs~~EI~~l~~rF~~-ld~d~~G--~l~~~ef~~i---p~l~~nPf~~ri~~~F 71 (81)
=|.+||++.||+.-. +-||.+- .=..+.|++| -++-++|-.+.+.+.|
T Consensus 16 As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~f 69 (371)
T COG0484 16 ASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQF 69 (371)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhcc
Confidence 389999999999866 5666532 2234556655 3344455555555444
No 142
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=36.42 E-value=62 Score=22.86 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhcccc-CCCCChhHHHHHHHhH
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVP-EFAMNPLSQVVFQNQL 72 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip-~l~~nPf~~ri~~~F~ 72 (81)
.||++++.++-+-|+.+.+ .|....+.+.++. +...+|..+.+++-+.
T Consensus 203 ~~~~~~~~~i~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 251 (262)
T PRK05289 203 GFSREEIHALRRAYKLLYR--SGLTLEEALEELAEEYPDSPEVKEILDFIE 251 (262)
T ss_pred CCCHHHHHHHHHHHHHHHH--cCccHHHHHHHHHhhccCCHHHHHHHHHHh
Confidence 8999999999999999986 4333344444443 3456888877776653
No 143
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=36.25 E-value=39 Score=23.29 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
+|+++.+. +++|.+|+.++|-.
T Consensus 102 DL~~vA~~--~gLs~~evi~~Hs~ 123 (201)
T smart00796 102 DLEFVARH--NGLSVDEVIRLHSA 123 (201)
T ss_pred CHHHHHHH--hCcCHHHHHHHHhC
Confidence 89999999 59999999999875
No 144
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=35.94 E-value=77 Score=21.83 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHh
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEF 52 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef 52 (81)
..+..+-+.+...|.-.+++.+|+|..+|+
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL 55 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEEL 55 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHH
Confidence 344455555555666666777777777777
No 145
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=35.93 E-value=46 Score=19.69 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhccc
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLSV 55 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~i 55 (81)
|-++.+.+.. +.+|++++..+...|.....+ ..+.+...+|-.+
T Consensus 5 eli~~i~~~~-~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG~F 51 (94)
T TIGR00988 5 ELIERIATQQ-SHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFGSF 51 (94)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCcEEE
Confidence 3355555543 589999999999999875322 2446666666543
No 146
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=35.85 E-value=75 Score=17.13 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhhCCCC--CC--ccCHHHhccc
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQRFCQLDRNA--KG--FISADEFLSV 55 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~--~G--~l~~~ef~~i 55 (81)
+.++.+. ++.+..-|.+|.+++..+.|.. +| ..+.+++..+
T Consensus 3 ~~eva~~--~gvs~~tlr~w~~~~g~~~~~r~~~~~r~yt~~~v~~l 47 (68)
T cd01104 3 IGAVARL--TGVSPDTLRAWERRYGLPAPQRTDGGHRLYSEADVARL 47 (68)
T ss_pred HHHHHHH--HCcCHHHHHHHHHhCCCCCCCcCCCCCeecCHHHHHHH
Confidence 3456667 4899999999998775554322 23 5566666543
No 147
>PRK14286 chaperone protein DnaJ; Provisional
Probab=35.82 E-value=49 Score=24.83 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHhh-hCCCCCC--ccCHHHhccc---cCCCCChhHHHHHHH
Q 034861 23 LFSQQEIVSLYQRFCQ-LDRNAKG--FISADEFLSV---PEFAMNPLSQVVFQN 70 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~-ld~d~~G--~l~~~ef~~i---p~l~~nPf~~ri~~~ 70 (81)
..|.+||++.|++-.. ..||++. .-..+.|..| -++-.+|-..++.+.
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 68 (372)
T PRK14286 15 SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQ 68 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6789999999999844 5677542 1223455444 223344444444443
No 148
>CHL00195 ycf46 Ycf46; Provisional
Probab=35.76 E-value=63 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFC 37 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~ 37 (81)
.++++.+++|.+.+ .++|..||++++++-.
T Consensus 161 ~~~~~~~~~l~~~~-~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 161 KIDSELLENLTRAC-QGLSLERIRRVLSKII 190 (489)
T ss_pred CCCHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 47889999998887 7999999999999743
No 149
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=35.74 E-value=88 Score=18.02 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhcc
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLS 54 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~ 54 (81)
|-++++.+. |+++++++....+.|.....+ ..+.+....|-.
T Consensus 5 eli~~ia~~--~~~~~~~v~~vl~~l~~~i~~~L~~g~~V~i~g~G~ 49 (90)
T smart00411 5 ELIDAIAEK--AGLSKKDAKAAVDAFLEIITEALKKGEKVELRGFGT 49 (90)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeCcEE
Confidence 445667777 699999999999999885432 133555555543
No 150
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=35.65 E-value=26 Score=27.16 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhc
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFL 53 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~ 53 (81)
.+++-+-|+|++++++++.+-+.|.-.-. ++|+||..-+-
T Consensus 369 ~~QIGMF~fTgl~peQv~~l~ke~~iYmT-~dGRiS~aG~s 408 (427)
T KOG1411|consen 369 TKQIGMFCFTGLNPEQVDWLTKEYHIYLT-KDGRISMAGLS 408 (427)
T ss_pred HHhhheeeecCCCHHHHHHHHhhheeeec-cCceEeecccc
Confidence 45555556799999999999999987654 48899887664
No 151
>PF02477 Nairo_nucleo: Nucleocapsid N protein; InterPro: IPR003486 The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle.; GO: 0019013 viral nucleocapsid; PDB: 3U3I_A.
Probab=34.82 E-value=24 Score=27.27 Aligned_cols=34 Identities=12% Similarity=0.366 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhcc-ccCC
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLS-VPEF 58 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~-ip~l 58 (81)
+++|+..||+.|.+-.+..+-.-....|+. +|+|
T Consensus 9 ~k~e~d~Wfk~~~ek~~l~s~~TnSASfce~lPdL 43 (442)
T PF02477_consen 9 NKKEFDEWFKPFSEKHPLKSNLTNSASFCEGLPDL 43 (442)
T ss_dssp SHHHHHHHHHHHHHTT--B-SSBSS-BS--S----
T ss_pred cHHHHHHHHHHHhhhcCccccccchHHHhccCCcH
Confidence 799999999999987666543333344443 6665
No 152
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=34.50 E-value=81 Score=17.82 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=24.7
Q ss_pred CHHHHHHHHHhhcC--CCCHHHHHHHHHHHhhhC
Q 034861 9 TQYDIEEVQQHCHN--LFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 9 s~e~l~~l~~~t~T--~Fs~~EI~~l~~rF~~ld 40 (81)
+||-++++.+-.++ +++++|...+.+.|....
T Consensus 12 nPevl~kl~~g~asLIGv~~~e~~aIi~~F~~~~ 45 (57)
T PF05952_consen 12 NPEVLEKLKEGEASLIGVDKDEQKAIIDAFKDEE 45 (57)
T ss_pred ChHHHHHHHcCCeeEecCCHHHHHHHHHHHcccc
Confidence 46777788665322 799999999999998765
No 153
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=34.34 E-value=76 Score=18.92 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHH-HHHhhhCCCCCCccCHHHhccc----cCCCCCh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLY-QRFCQLDRNAKGFISADEFLSV----PEFAMNP 62 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~-~rF~~ld~d~~G~l~~~ef~~i----p~l~~nP 62 (81)
.++.+++.++... +..+.+++.+-. ..|+++..+....++.+|..++ |.|=.-|
T Consensus 35 ~~~~~~l~~~~~~--~~~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikRP 93 (105)
T cd02977 35 PPTKEELKELLAK--LGLGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKRP 93 (105)
T ss_pred CCCHHHHHHHHHh--cCCCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeCC
Confidence 4667788888777 366666666544 5566665532357788877764 6554444
No 154
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=34.32 E-value=47 Score=19.31 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=16.9
Q ss_pred HHHHHHhhhCCCCCCccCHHHhcc
Q 034861 31 SLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 31 ~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
++..-|+.+ .++++.||.+|+..
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~ 29 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRR 29 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHH
T ss_pred HHHHHHHHH-HcCCCcccHHHHHH
Confidence 345677788 44578999999875
No 155
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=34.11 E-value=77 Score=25.15 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
+|+-++..+.++.- ..||.+ -.|.+.++..+|.|+..+|..+
T Consensus 302 kLs~deF~~F~e~L-----q~Eil~--lEF~~~~~~~~g~Ise~DFA~~ 343 (489)
T KOG2643|consen 302 KLSIDEFLKFQENL-----QEEILE--LEFERFDKGDSGAISEVDFAEL 343 (489)
T ss_pred cccHHHHHHHHHHH-----HHHHHH--HHHHHhCcccccccCHHHHHHH
Confidence 57777777777652 445553 3688888887899999999874
No 156
>PRK14283 chaperone protein DnaJ; Provisional
Probab=34.09 E-value=49 Score=24.80 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCCC-ccCHHHhccc---cCCCCChhHHHHHHHh
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAKG-FISADEFLSV---PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~G-~l~~~ef~~i---p~l~~nPf~~ri~~~F 71 (81)
.=|.+||++.|++. ++.-||.+. .-..+.|..| -++-.+|-..++++.|
T Consensus 16 ~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~ 69 (378)
T PRK14283 16 NADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQF 69 (378)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhh
Confidence 44789999999998 456777542 2234555555 3444566666666543
No 157
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=33.87 E-value=93 Score=20.27 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQ 34 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~ 34 (81)
.+++++++-.+++ |+.|+++..+..+
T Consensus 82 ~i~eeDIkLV~eQ--a~VsreeA~kAL~ 107 (122)
T COG1308 82 DISEEDIKLVMEQ--AGVSREEAIKALE 107 (122)
T ss_pred CCCHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4899999999999 5999999987654
No 158
>cd08040 OBF_DNA_ligase_family The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation and C-terminal OB-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core unit contains six conserved sequence motifs (I, III, IIIa, IV,
Probab=33.71 E-value=49 Score=20.09 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHhhhCC
Q 034861 22 NLFSQQEIVSLYQRFCQLDR 41 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~ 41 (81)
|+|+.++...|++++..+..
T Consensus 42 tGf~~~~~~~l~~~l~~~~~ 61 (108)
T cd08040 42 TGFSADERRDLWQNLEPLVT 61 (108)
T ss_pred CCCCHHHHHHHHHhcchhcc
Confidence 79999999999999987754
No 159
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=33.66 E-value=45 Score=23.11 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
.+|+++.+. +++|.+|+.++|-.
T Consensus 91 ~DL~~vA~~--~gLs~eevi~~Hs~ 113 (202)
T TIGR00370 91 PDLEEVAKI--NQLSPEEVIDIHSN 113 (202)
T ss_pred CCHHHHHHH--hCcCHHHHHHHHhC
Confidence 379999999 59999999999875
No 160
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=33.51 E-value=27 Score=20.49 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
+|-++|.+.-.. -.+++.+|..+|..+..
T Consensus 22 lT~~eI~~~L~~--~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 22 LTYDEINDALPE--DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp -BHHHHHHH-S---S---HHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCc--cCCCHHHHHHHHHHHHH
Confidence 444444444443 14555555555555554
No 161
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=33.10 E-value=77 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhC
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld 40 (81)
..|+|+++++.+. =-+++++||++.+...
T Consensus 258 ~Pt~e~Vd~~H~~-----Y~~~L~~LFd~~K~~~ 286 (297)
T PF03982_consen 258 NPTQEDVDKLHAR-----YIEALRELFDKHKAKY 286 (297)
T ss_pred CcCHHHHHHHHHH-----HHHHHHHHHHHHHHhc
Confidence 4678999999888 3578889999888754
No 162
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.00 E-value=61 Score=24.50 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhh-hCCCCCCccCHHHhccc---cCCCCChhHHHHHHHh
Q 034861 25 SQQEIVSLYQRFCQ-LDRNAKGFISADEFLSV---PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 25 s~~EI~~l~~rF~~-ld~d~~G~l~~~ef~~i---p~l~~nPf~~ri~~~F 71 (81)
|..||++.||+-.. .-||++.- ..+-|++| -++-+||-..+|.+.|
T Consensus 17 s~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~ 66 (337)
T KOG0712|consen 17 SEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQY 66 (337)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 78999999999765 35665432 66777777 4566788888888765
No 163
>PHA03256 BDLF3; Provisional
Probab=32.74 E-value=41 Score=20.12 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCccCHHHhccccCCCCChhHHHHHHHhHHH
Q 034861 44 KGFISADEFLSVPEFAMNPLSQVVFQNQLML 74 (81)
Q Consensus 44 ~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~ 74 (81)
.+.|+.+||..+.....-|+..-|.++...+
T Consensus 14 ~~~IsE~df~~~~~ff~rpLp~lVaevska~ 44 (77)
T PHA03256 14 RGTIGEREFGELLSWDPTDLPRTVARVYVAV 44 (77)
T ss_pred CCccCHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 4788888888887777777777777766543
No 164
>cd07967 OBF_DNA_ligase_III The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase III is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic proph
Probab=32.34 E-value=47 Score=21.58 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhhhC
Q 034861 22 NLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld 40 (81)
|+||.+++..|.+++..+-
T Consensus 46 TGfs~~~l~~l~~~L~~l~ 64 (139)
T cd07967 46 NGHDDATLARLQKELKMVK 64 (139)
T ss_pred CCCCHHHHHHHHHHhhhhc
Confidence 7999999999999998764
No 165
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=32.09 E-value=66 Score=21.55 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
-+.|++++++.... |+++|.+|.+.
T Consensus 20 W~DP~~~~eI~~A~----tR~dIR~LIkd 44 (145)
T cd00481 20 WIDPNELEEIANAN----TREDIRKLIKD 44 (145)
T ss_pred eeCHHHHHHHHHhh----hHHHHHHHHHC
Confidence 47899999999875 99999999876
No 166
>PRK14294 chaperone protein DnaJ; Provisional
Probab=31.96 E-value=54 Score=24.47 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHh-hhCCCCC
Q 034861 23 LFSQQEIVSLYQRFC-QLDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~-~ld~d~~ 44 (81)
.-|.+||++.|++.. ++.||.+
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~ 37 (366)
T PRK14294 15 DASEEEIKKSYRKLAMKYHPDRN 37 (366)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCC
Confidence 558899999999984 4677764
No 167
>PRK14296 chaperone protein DnaJ; Provisional
Probab=31.78 E-value=59 Score=24.42 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCCC-ccCHHHhccc---cCCCCChhHHHHHHHh
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAKG-FISADEFLSV---PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~G-~l~~~ef~~i---p~l~~nPf~~ri~~~F 71 (81)
.-|.+||++.|++. ++.-||.+. .=..+.|+.| -++-.+|-.+++.+.|
T Consensus 15 ~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~ 68 (372)
T PRK14296 15 TASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQF 68 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence 44789999999998 456676532 1123455555 3344555555555543
No 168
>PRK14287 chaperone protein DnaJ; Provisional
Probab=31.75 E-value=62 Score=24.25 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhh-hCCCCCCc-cCHHHhccc---cCCCCChhHHHHHHH
Q 034861 23 LFSQQEIVSLYQRFCQ-LDRNAKGF-ISADEFLSV---PEFAMNPLSQVVFQN 70 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~-ld~d~~G~-l~~~ef~~i---p~l~~nPf~~ri~~~ 70 (81)
..|.+||++.|++... ..||.+.. =..+.|+.| -++-.+|-..++.+.
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 15 NASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 6789999999998844 56765421 112345544 233344555555444
No 169
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=31.73 E-value=45 Score=21.80 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHH
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLY 33 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~ 33 (81)
||++|.++|-.- ..||.+|+.+.|
T Consensus 2 Ls~~e~~~l~~~--P~l~~~el~~~f 25 (166)
T PF13700_consen 2 LSEEEREALYSL--PRLSEEELIRYF 25 (166)
T ss_pred cCHHHHHHhcCC--CCCCHHHHHHHh
Confidence 566666666555 346666666544
No 170
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=31.42 E-value=68 Score=23.90 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHH
Q 034861 2 GTASSMLTQYDIEEVQQHCHNLFSQQEIVSLY 33 (81)
Q Consensus 2 G~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~ 33 (81)
|++.+++.+|+|-.|+.. +++++|-++|.
T Consensus 317 gATvG~ldee~LFYL~SR---Gi~~~eA~~ll 345 (366)
T TIGR01981 317 GATVGQIDDEQLFYLRSR---GIDEEEARRLL 345 (366)
T ss_pred ceeecCCCHHHHHHHHHc---CCCHHHHHHHH
Confidence 445568999999999998 99999988875
No 171
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=31.36 E-value=1.2e+02 Score=19.17 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=25.5
Q ss_pred CCCHHHH-HHHHHhhcCCCCHHHHHHHHHHHhhhC
Q 034861 7 MLTQYDI-EEVQQHCHNLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 7 ~ls~e~l-~~l~~~t~T~Fs~~EI~~l~~rF~~ld 40 (81)
.++-++| +++++.. |.+++.+|......|....
T Consensus 28 ~~tl~~Ia~~i~~~~-s~~t~~di~~vl~~~~~~~ 61 (124)
T PF14848_consen 28 TLTLEDIAEEIAKEG-STLTRADIEAVLNALKDEM 61 (124)
T ss_pred ccCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHH
Confidence 4677888 5565543 6999999999999998743
No 172
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=31.31 E-value=71 Score=21.52 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
-+.|++++++.... |+++|.+|.+.
T Consensus 23 w~DP~~~~eI~~A~----tR~dIR~LI~~ 47 (150)
T PRK08570 23 WIDPEALEDVAEAI----TREDIRELIKE 47 (150)
T ss_pred eeCHHHHHHHHHHh----hHHHHHHHHHC
Confidence 48899999999875 99999999876
No 173
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=31.18 E-value=58 Score=19.41 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhccc------cCCCCChh
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLSV------PEFAMNPL 63 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~i------p~l~~nPf 63 (81)
|-++.+.+. +.+|++++......|...-.+ ..+.+....|-++ +....||.
T Consensus 5 eli~~ia~~--~~~s~~~~~~~v~~~~~~i~~~L~~g~~V~i~gfG~F~v~~r~~R~grNP~ 64 (90)
T PRK10753 5 QLIDVIADK--AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQ 64 (90)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEEEEEeeeCCccccCCC
Confidence 456777777 699999999999999875322 2445666666543 33455664
No 174
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=31.17 E-value=66 Score=24.85 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=27.1
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHH-HHHhh
Q 034861 2 GTASSMLTQYDIEEVQQHCHNLFSQQEIVSLY-QRFCQ 38 (81)
Q Consensus 2 G~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~-~rF~~ 38 (81)
|++.+++.+|+|-.|+.. +++++|-++|. +.|..
T Consensus 396 gAtvG~ideeqLFYL~SR---Gi~~~eA~~Lii~gF~~ 430 (448)
T TIGR01980 396 EATVSKISEEQLFYLMSR---GLSEEDARAMIVRGFVE 430 (448)
T ss_pred eeeccCCCHHHHHHHHHc---CCCHHHHHHHHHHHhHH
Confidence 455678999999999998 99999988765 34543
No 175
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=31.00 E-value=74 Score=20.48 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhhhC
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld 40 (81)
.+-++-|+.. ++|.+||+.++++-..-.
T Consensus 24 ~~k~~FL~sK---GLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 24 EKKIAFLESK---GLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHC---T--HHHHHHHHHHHT--S
T ss_pred HHHHHHHHcC---CCCHHHHHHHHHhcCCcc
Confidence 3456677787 999999999999977655
No 176
>PF13518 HTH_28: Helix-turn-helix domain
Probab=30.87 E-value=80 Score=15.96 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhhC
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld 40 (81)
.+.++.... +.|+..|.+|.++|....
T Consensus 14 s~~~~a~~~--gis~~tv~~w~~~y~~~G 40 (52)
T PF13518_consen 14 SVREIAREF--GISRSTVYRWIKRYREGG 40 (52)
T ss_pred CHHHHHHHH--CCCHhHHHHHHHHHHhcC
Confidence 356677773 889999999999999844
No 177
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.61 E-value=81 Score=15.92 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQRF 36 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~rF 36 (81)
.+.++.|+... ..+++..|+...+..
T Consensus 2 ~~~v~~L~~mF-P~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 2 EEMVQQLQEMF-PDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHHHHS-SSS-HHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHc
Confidence 56788888885 888999998887654
No 178
>PTZ00432 falcilysin; Provisional
Probab=30.61 E-value=74 Score=27.47 Aligned_cols=47 Identities=6% Similarity=0.199 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCC
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEF 58 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l 58 (81)
++-+.|++.- -.+|++|++++.++.+++-.-++-..+.+++.++|.+
T Consensus 586 ~e~~~L~~~~-~~Ls~ee~~~i~~~~~~l~~~q~~~~~~e~l~~lP~l 632 (1119)
T PTZ00432 586 LVKDELKERL-SHLTKEQVDEMEKAYEKFKKEREADDDPEHLDSFPIL 632 (1119)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCChhHHhhcCCC
Confidence 3444453332 4789999999999999874333334445555555544
No 179
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=30.60 E-value=58 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHh
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEF 52 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef 52 (81)
.-|+.||.-.+..|.++-| .|.|....+
T Consensus 77 R~s~~ei~DYF~~FLk~KP--qG~IdsR~i 104 (156)
T COG4875 77 RSSRSEILDYFSHFLKLKP--QGYIDSRKI 104 (156)
T ss_pred ccCHHHHHHHHHHHhccCC--cceecceeE
Confidence 7799999999999999998 777765433
No 180
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=30.54 E-value=1.1e+02 Score=20.18 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.7
Q ss_pred CChhHHHHHHHhHHHH
Q 034861 60 MNPLSQVVFQNQLMLI 75 (81)
Q Consensus 60 ~nPf~~ri~~~F~~~~ 75 (81)
.|||+.|.++.|..-+
T Consensus 114 ~NPf~~~~vr~yLr~v 129 (132)
T PF04852_consen 114 ANPFAARAVRLYLREV 129 (132)
T ss_pred CCchhhHHHHHHHHHH
Confidence 8999999999987643
No 181
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=30.26 E-value=1e+02 Score=17.68 Aligned_cols=29 Identities=7% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhhhC
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld 40 (81)
.|-++.+.+. |.+|+.++..+.+.|...-
T Consensus 4 ~eli~~ia~~--~~~s~~~v~~vl~~~~~~i 32 (90)
T PF00216_consen 4 KELIKRIAEK--TGLSKKDVEAVLDALFDVI 32 (90)
T ss_dssp HHHHHHHHHH--HTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHHH
Confidence 3456777777 4899999999999998743
No 182
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=30.03 E-value=62 Score=22.35 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 5 SSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 5 ~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
+..|+++--..|..++ |..|++.+|.-|+.
T Consensus 71 qgkLt~eL~~~I~~a~----tl~elEdlY~PyK~ 100 (193)
T PF09371_consen 71 QGKLTPELKQAIENAT----TLQELEDLYLPYKP 100 (193)
T ss_dssp TT---HHHHHHHHH------SHHHHHHHHGGGS-
T ss_pred cccCCHHHHHHHHhcC----CHHHHHHHHhhhcc
Confidence 3468999888888876 99999999999997
No 183
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=29.91 E-value=34 Score=26.01 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHhhhC
Q 034861 22 NLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld 40 (81)
|.||++||-||-|.|.+..
T Consensus 186 TAFTReQIaRLEKEFyrEN 204 (408)
T KOG0844|consen 186 TAFTREQIARLEKEFYREN 204 (408)
T ss_pred hhhhHHHHHHHHHHHHHhc
Confidence 6899999999999999864
No 184
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=29.87 E-value=45 Score=19.03 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=12.8
Q ss_pred CCCCCCCCCHHHHHHHHH
Q 034861 1 MGTASSMLTQYDIEEVQQ 18 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~ 18 (81)
||.++|++..|+.-.+.+
T Consensus 1 MGC~~SK~d~eeaV~~Ck 18 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLCK 18 (60)
T ss_pred CCCCcccccCcHHHHHHH
Confidence 999999987665544444
No 185
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=29.69 E-value=1.1e+02 Score=17.11 Aligned_cols=35 Identities=9% Similarity=0.358 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCC
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDR 41 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~ 41 (81)
.||+|+|.+.-..-.-.-+++++..++..+....+
T Consensus 9 ~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~~er 43 (61)
T TIGR01639 9 KLSKEELNELINSLDEIPNRNDMLIIWNQVHGIER 43 (61)
T ss_pred HccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 57888888776653336678888888888777765
No 186
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=29.57 E-value=1e+02 Score=16.83 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=14.9
Q ss_pred CCCCCCCCHHHHHHHHHhh
Q 034861 2 GTASSMLTQYDIEEVQQHC 20 (81)
Q Consensus 2 G~~~S~ls~e~l~~l~~~t 20 (81)
|..+..+|+||+...++.+
T Consensus 3 gg~~~qpS~eE~k~~e~~A 21 (49)
T PF10642_consen 3 GGPPPQPSEEEIKAAEAQA 21 (49)
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 3456789999999998884
No 187
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=29.53 E-value=28 Score=28.51 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.+++.++++.-.||..+|.|+.|..+..+.+++
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~v 618 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKV 618 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 678999999999999999988888887777654
No 188
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=29.48 E-value=1.4e+02 Score=21.24 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHhhc----CCCCHHHHHHHHHHHhhhCC
Q 034861 4 ASSMLTQYDIEEVQQHCH----NLFSQQEIVSLYQRFCQLDR 41 (81)
Q Consensus 4 ~~S~ls~e~l~~l~~~t~----T~Fs~~EI~~l~~rF~~ld~ 41 (81)
....||+++++.+.+.-. -.|+++||.++......+..
T Consensus 13 ~~~~Lt~eqi~~f~~dGyvvl~~vls~eev~~lr~~i~~~~~ 54 (277)
T TIGR02408 13 AAGPLSAKQLQSYERDGFLLLENLFSDDEVAALLAEVERMTR 54 (277)
T ss_pred CCCCCCHHHHHHHHHCCEEECcccCCHHHHHHHHHHHHHHHh
Confidence 445799999999988621 15789999999999888743
No 189
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=29.31 E-value=76 Score=21.26 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
-+.|++++++.... |+++|.+|.+.
T Consensus 20 w~DP~~~~eI~~A~----tR~dIR~LI~~ 44 (145)
T cd01418 20 WIDPERLEEVAEAI----TRDDIRALIKE 44 (145)
T ss_pred eeChHHHHHHHHhh----hHHHHHHHHHC
Confidence 47899999999875 99999999876
No 190
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=28.87 E-value=83 Score=18.20 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
++++|...| ++|+.|.+-+.+-
T Consensus 46 ~~~el~~~C--gL~~aEAeLl~~L 67 (70)
T PF10975_consen 46 SVEELMEEC--GLSRAEAELLLSL 67 (70)
T ss_pred CHHHHHHHc--CCCHHHHHHHHHH
Confidence 578888884 9999998877653
No 191
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=28.86 E-value=93 Score=20.90 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCC
Q 034861 23 LFSQQEIVSLYQRFCQLDRNA 43 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~ 43 (81)
.+|++||+.|-..-..+|||+
T Consensus 23 ~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 23 KLSPEELEELENELEEMDPDN 43 (147)
T ss_pred hCCHHHHHHHHHHHHhhCCCc
Confidence 679999999998888888874
No 192
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=28.85 E-value=1.1e+02 Score=16.81 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhHHHH
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLMLI 75 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~~ 75 (81)
|+.|.+-|..-+..--=|-.-.++.+|+.+..+++.+.+.+++=++-..+|
T Consensus 2 T~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 2 TDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 455555555555553222344788999998888888888888877765543
No 193
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=28.79 E-value=1.2e+02 Score=18.54 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHhhhCCCC--CCccCHHHhcc
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNA--KGFISADEFLS 54 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~--~G~l~~~ef~~ 54 (81)
+.+++.||..+.+--++..|++ +..||.+-|+-
T Consensus 2 ~pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GFl~ 36 (89)
T PF08356_consen 2 KPLQPQELEDIKKVVRENIPDGVNDNGITLDGFLF 36 (89)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcCCCccchhhHHH
Confidence 4666666666666656655542 34567666654
No 194
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=28.71 E-value=40 Score=18.24 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=16.7
Q ss_pred cCCCCHHHHHHHHHHHhhh
Q 034861 21 HNLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 21 ~T~Fs~~EI~~l~~rF~~l 39 (81)
|++|+++.+..+++.|.+.
T Consensus 6 V~Gf~~~~~~~vl~~F~~f 24 (53)
T PF14605_consen 6 VSGFPPDLAEEVLEHFASF 24 (53)
T ss_pred EEeECchHHHHHHHHHHhc
Confidence 5799999999999999974
No 195
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=28.48 E-value=70 Score=20.81 Aligned_cols=22 Identities=14% Similarity=0.156 Sum_probs=12.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHH
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
|.+|.+.. |.||..+|+.|++-
T Consensus 2 l~~l~~~~-T~Ls~~di~~L~~l 23 (145)
T PF12282_consen 2 LSDLCREH-TDLSDADIEWLQRL 23 (145)
T ss_dssp HHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHH
Confidence 34454443 79999999998876
No 196
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=28.45 E-value=1.2e+02 Score=17.24 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhccc
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLSV 55 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~i 55 (81)
+-++.+... |.++++++..+...|...-.+ ..+.+...+|-++
T Consensus 4 ~l~~~ia~~--~~~~~~~v~~vl~~~~~~i~~~L~~g~~V~l~~~G~F 49 (87)
T cd00591 4 ELIEAIAEK--TGLSKKDAEAAVDAFLDVITEALAKGEKVELPGFGTF 49 (87)
T ss_pred HHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCEEE
Confidence 345666777 699999999999999874322 1335665666543
No 197
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.17 E-value=58 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFC 37 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~ 37 (81)
.|+.|-|+.|.++. |.+||...-+.|.
T Consensus 100 ~LN~elLe~Y~~~~----~~~ev~~~q~~~l 126 (127)
T PF04034_consen 100 ELNKELLEAYAKCK----TSEEVIEIQNEYL 126 (127)
T ss_pred HHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 47788899999985 8889998888775
No 198
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=27.90 E-value=3e+02 Score=21.59 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLML 74 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~ 74 (81)
-++++++.++-+.+ +.-++++|..+.++-.. ...|+.+|+..+......+..+.++++.+.+
T Consensus 12 ~i~~~~i~~~l~~~-~~~~~~~v~~il~Kal~-----~~~Ls~eEal~LL~~~~~~~le~L~~~A~~i 73 (469)
T PRK09613 12 FIDDEEIEELLEKA-KNPDKDEIREILEKAKE-----KKGLSPEEAAVLLNVEDPELLEEIFEAAREI 73 (469)
T ss_pred hcCHHHHHHHHHhc-cCCCHHHHHHHHHHHHc-----CCCCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 46788888887775 56678888888776553 3379999999885554444666666665443
No 199
>PRK14285 chaperone protein DnaJ; Provisional
Probab=27.88 E-value=56 Score=24.45 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCC
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~ 44 (81)
.-|.+||++.|++. +++.||++
T Consensus 14 ~a~~~eIk~ayr~la~~~HPD~~ 36 (365)
T PRK14285 14 GASKDEIKKAYRKIAIKYHPDKN 36 (365)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCC
Confidence 56899999999987 55678764
No 200
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=27.86 E-value=93 Score=20.46 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCHHHHH
Q 034861 3 TASSMLTQYDIEEVQQHCHNLFSQQEIV 30 (81)
Q Consensus 3 ~~~S~ls~e~l~~l~~~t~T~Fs~~EI~ 30 (81)
.++..+|+.-|+.|+..+-|.+|+.+..
T Consensus 5 ~~pv~fS~~ll~~L~~s~etD~sR~q~~ 32 (142)
T PF07956_consen 5 STPVQFSQSLLSQLQSSTETDSSRAQTL 32 (142)
T ss_pred CCCcccCHHHHHHHhCCCCCChhHHHHH
Confidence 3455788888888888766677775443
No 201
>PRK14278 chaperone protein DnaJ; Provisional
Probab=27.80 E-value=67 Score=24.15 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHh-hhCCCCCC
Q 034861 23 LFSQQEIVSLYQRFC-QLDRNAKG 45 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~-~ld~d~~G 45 (81)
.-|.+||++.|++.. ++-||.++
T Consensus 14 ~a~~~eik~ayr~la~~~hpD~~~ 37 (378)
T PRK14278 14 NASDAEIKRAYRKLARELHPDVNP 37 (378)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC
Confidence 458899999999984 46677654
No 202
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=27.79 E-value=75 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHH
Q 034861 14 EEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 14 ~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
+||..+ |++++.-|.+|-|.
T Consensus 4 eELA~~--tG~srQTINrWvRk 23 (122)
T PF07037_consen 4 EELAEL--TGYSRQTINRWVRK 23 (122)
T ss_pred HHHHHH--hCccHHHHHHHHHh
Confidence 356788 69999999999987
No 203
>TIGR01200 Porphyromonas gingivalis paralogous family TIGR01200. No identifiable homologs outside Porphyromonas gingivalis.
Probab=27.76 E-value=65 Score=23.98 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHhhhCCCCCCcc---CHHHhccccCCCCChhH
Q 034861 25 SQQEIVSLYQRFCQLDRNAKGFI---SADEFLSVPEFAMNPLS 64 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d~~G~l---~~~ef~~ip~l~~nPf~ 64 (81)
+++++.++|++|...--|..+.. ..++++.|+...-||+.
T Consensus 248 ~rk~~r~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~p~np~e 290 (292)
T TIGR01200 248 SRKEIRNIYENYYEEIDNQKIFRSLKNPEDIQRIRVTPYNPLE 290 (292)
T ss_pred HHHHHHHHHHHHHhhhccCcceecCCCchhhhhcCCCCCCccc
Confidence 56788888999887553334433 36899999988888863
No 204
>PHA02970 hypothetical protein; Provisional
Probab=27.74 E-value=94 Score=19.83 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhhC
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~rF~~ld 40 (81)
+.++..- --++.+||..+|-+|.++.
T Consensus 28 ~~D~sey--~~YN~~EIn~lY~~FLk~h 53 (115)
T PHA02970 28 VHDLSEY--EVYNPKEINSLYISFLKHH 53 (115)
T ss_pred HccHHHH--hcCCHHHHHHHHHHHHHHc
Confidence 3344444 3679999999999999864
No 205
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=27.67 E-value=54 Score=22.61 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 10 QYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 10 ~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
..+|+++.+. +++|.+|+.++|-.
T Consensus 99 g~DL~~vA~~--~gls~~evi~~H~~ 122 (202)
T PF02682_consen 99 GPDLEEVAEH--NGLSVEEVIRLHSS 122 (202)
T ss_dssp HTTHHHHHHH--HTS-HHHHHHHHHT
T ss_pred CCCHHHHHHH--hCcCHHHHHHHHHc
Confidence 4589999999 59999999999875
No 206
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=27.59 E-value=1.5e+02 Score=18.09 Aligned_cols=31 Identities=6% Similarity=0.205 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
++.+++..+.+.+.=.||.+|++++-..+..
T Consensus 3 i~~e~v~~la~LarL~lseee~e~~~~~l~~ 33 (96)
T COG0721 3 IDREEVKHLAKLARLELSEEELEKFATQLED 33 (96)
T ss_pred cCHHHHHHHHHHhhcccCHHHHHHHHHHHHH
Confidence 4556666555553236677776665555444
No 207
>cd07970 OBF_DNA_ligase_LigC The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase LigC is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of Mycobacterium tuberculosis LigC and similar ba
Probab=27.42 E-value=68 Score=20.26 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHhhhCC
Q 034861 22 NLFSQQEIVSLYQRFCQLDR 41 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~ 41 (81)
|+||.++.+.|++++..+-.
T Consensus 38 tGf~~~~~~~L~~~l~~l~~ 57 (122)
T cd07970 38 SPLAAAERRELAELLEPARA 57 (122)
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 68999999999999998753
No 208
>TIGR01259 comE comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation.
Probab=27.39 E-value=1.3e+02 Score=18.99 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCC
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAM 60 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~ 60 (81)
++....++|+.. .+..++..+++.+.|.+.. +.-+.+|+..+|.+..
T Consensus 62 iNtA~~~eL~~l--pGIG~~~A~~Ii~~R~~~g----~f~s~eeL~~V~GIg~ 108 (120)
T TIGR01259 62 INAASLEELQAL--PGIGPAKAKAIIEYREENG----AFKSVDDLTKVSGIGE 108 (120)
T ss_pred CCcCCHHHHhcC--CCCCHHHHHHHHHHHHhcC----CcCCHHHHHcCCCCCH
Confidence 555567777777 6999999999999998732 2557899998887743
No 209
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=27.36 E-value=1.2e+02 Score=20.61 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
.+|+++.+.+++. +..+|..|........ .++.+++..+
T Consensus 134 ~~s~~~~e~~~~~---------l~~~~~~f~~~va~~R-~~~~~~~~~~ 172 (207)
T TIGR00706 134 ELTPEERDILQNL---------VNESYEQFVQVVAKGR-NLPVEDVKKF 172 (207)
T ss_pred CCCHHHHHHHHHH---------HHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4677766666654 7888999998755434 3777777655
No 210
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=27.28 E-value=44 Score=19.75 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc-ccCCCCChhHH
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS-VPEFAMNPLSQ 65 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~-ip~l~~nPf~~ 65 (81)
-.+++|.... .+.+-.+.+.-..+++.+-.. .+.+-+.. +|+ +.|||++
T Consensus 14 ~~VeqLk~e~--~~~R~~vS~a~~el~~y~E~~---~~~DpLl~gv~~-~~NPf~e 63 (71)
T KOG4119|consen 14 KEVEQLKLEA--NIERIKVSKAAAELLEYCETH---ATEDPLLEGVPE-KENPFRE 63 (71)
T ss_pred HHHHHHHHHH--HhhHhhHHHHHHHHHHHHHhc---CccCccccCCcc-ccCCCcc
Confidence 4577787774 778888888888888876422 22233333 444 7899887
No 211
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.04 E-value=77 Score=23.44 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhh-hCCCCCCcc--CHHHhccc---cCCCCChhHHHHHHHh
Q 034861 25 SQQEIVSLYQRFCQ-LDRNAKGFI--SADEFLSV---PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 25 s~~EI~~l~~rF~~-ld~d~~G~l--~~~ef~~i---p~l~~nPf~~ri~~~F 71 (81)
++++|++-|+.-.. .-||++|-- ..+-|..| -++=.||..+.+.+.+
T Consensus 44 t~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 44 TKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred chHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 78999999999887 677777654 23334433 4455677776666655
No 212
>CHL00085 ycf24 putative ABC transporter
Probab=26.98 E-value=89 Score=24.46 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHH-HHHhh
Q 034861 2 GTASSMLTQYDIEEVQQHCHNLFSQQEIVSLY-QRFCQ 38 (81)
Q Consensus 2 G~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~-~rF~~ 38 (81)
|++.+++.+|+|-.|+.. +++++|-++|. +.|..
T Consensus 424 gAtvG~ideeqLFYL~SR---Gi~e~eA~~Llv~gF~~ 458 (485)
T CHL00085 424 EASTSKIGEEQLFYFLQR---GINLEEAISLLISGFCK 458 (485)
T ss_pred eeccCCCCHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 455678999999999999 99999988765 44543
No 213
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=26.93 E-value=76 Score=21.97 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFC 37 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~ 37 (81)
.|++|-|++|..++ ++.||.++-+.|.
T Consensus 149 eLN~e~Le~Y~~a~----~s~eVveiq~~~l 175 (179)
T COG2042 149 ELNKELLEEYSNAE----DSAEVVEIQEEYL 175 (179)
T ss_pred HHhHHHHHHHHhcc----chHHHHHHHHHHH
Confidence 48899999999996 7778888888775
No 214
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=26.60 E-value=1.1e+02 Score=16.51 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQRF 36 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF 36 (81)
.|++++.+-++.-...|+++=|..|.+|-
T Consensus 15 MS~eEI~~er~eL~~~LdP~li~~L~~R~ 43 (49)
T PF08621_consen 15 MSPEEIEEEREELLESLDPKLIEFLKKRA 43 (49)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHhh
Confidence 45555554433322356666666665553
No 215
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=26.60 E-value=88 Score=24.50 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHH-HHHhh
Q 034861 2 GTASSMLTQYDIEEVQQHCHNLFSQQEIVSLY-QRFCQ 38 (81)
Q Consensus 2 G~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~-~rF~~ 38 (81)
|++.+++.+|+|-.|+.. +++++|-+++. +.|..
T Consensus 425 gATvG~ideeqLFYL~SR---Gi~e~eA~~Llv~gF~~ 459 (486)
T PRK11814 425 EATTSKISEDQLFYCRQR---GISEEDAVSMIVNGFCK 459 (486)
T ss_pred eeecCCCCHHHHHHHHHc---CCCHHHHHHHHHHHHHH
Confidence 455668999999999999 99999988765 44554
No 216
>cd07972 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of Pyrococcus furiosus DN
Probab=26.53 E-value=69 Score=20.02 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHhhhC
Q 034861 22 NLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld 40 (81)
|+|+.++++.+.++++.+-
T Consensus 44 tG~~~~~~~~l~~~l~~~~ 62 (122)
T cd07972 44 TGLTDEELEELTERLRELI 62 (122)
T ss_pred cCCCHHHHHHHHHHhhhhh
Confidence 6889999998888887754
No 217
>PF07900 DUF1670: Protein of unknown function (DUF1670); InterPro: IPR012872 The hypothetical eukaryotic proteins found in this family are of unknown function.
Probab=26.50 E-value=99 Score=22.08 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCCh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNP 62 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nP 62 (81)
..++||++.+.+. .+.+.-...++-|-+.+-. ++.|.||.+|+..|...+.--
T Consensus 69 l~~~ED~e~~~~~--~~~~elr~~rIvRl~~EAy-~QgglLT~~Dla~LL~~S~~T 121 (220)
T PF07900_consen 69 LVDPEDIEMRNEK--YGLSELRKHRIVRLTNEAY-DQGGLLTQEDLAMLLGISPRT 121 (220)
T ss_pred ecCHHHHHHHHhh--cCHHHHHHHHHHHHHHHHH-HcCCcccHHHHHHHHCCCHHH
Confidence 3678888876664 2555555566777776654 358899999998776654433
No 218
>PF11219 DUF3014: Protein of unknown function (DUF3014); InterPro: IPR021382 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=26.41 E-value=1.5e+02 Score=20.02 Aligned_cols=51 Identities=14% Similarity=0.293 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc--cCCCCChhHHHHHHHhHHHH
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV--PEFAMNPLSQVVFQNQLMLI 75 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i--p~l~~nPf~~ri~~~F~~~~ 75 (81)
-+-|...- +.++.+.+..+|++|+-|.- +-+..+ |+ .-|-+|++.+.+.++
T Consensus 51 Yd~yv~~~-~s~d~~~~v~~Y~~~~PL~q--------qAy~ElGyp~---~~F~d~l~~aid~lL 103 (158)
T PF11219_consen 51 YDPYVDAI-ESVDADALVALYRRLYPLFQ--------QAYAELGYPD---RYFNDRLLAAIDHLL 103 (158)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHHH--------HHHHHhCCCc---ccHHHHHHHHHHHHH
Confidence 34455553 68899999999999998763 233332 22 227777777776653
No 219
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=26.40 E-value=51 Score=18.93 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=24.2
Q ss_pred hhCCCCCCccCHHHhccc------------cCCCCChhHHHHHHHhH
Q 034861 38 QLDRNAKGFISADEFLSV------------PEFAMNPLSQVVFQNQL 72 (81)
Q Consensus 38 ~ld~d~~G~l~~~ef~~i------------p~l~~nPf~~ri~~~F~ 72 (81)
+|-.|.+|++|...+.++ .-.-.-|+++.++..|.
T Consensus 2 ELiTN~dGrLSTT~~iQffg~lv~agil~~~vy~dr~yv~~lf~~fa 48 (60)
T PF10841_consen 2 ELITNADGRLSTTAFIQFFGALVMAGILIYCVYLDRPYVPELFMTFA 48 (60)
T ss_pred ccccCCCCcEehHHHHHHHHHHHHHHHHHhheeeCCCCcHHHHHHHH
Confidence 455677999999988775 22245677777777764
No 220
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.37 E-value=1.4e+02 Score=19.53 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCC-CccCHHHhccc--cCCCCChhHHH
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAK-GFISADEFLSV--PEFAMNPLSQV 66 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~-G~l~~~ef~~i--p~l~~nPf~~r 66 (81)
+|..|+.. +--.+.-..|-+.|.+...+++ ..|+.-||..+ .+|.+...|+.
T Consensus 35 eLn~Lm~~---nTEeK~kt~~~kt~~r~v~~K~we~iti~Efi~LR~AGlt~~aIAd~ 89 (126)
T PF10654_consen 35 ELNQLMNE---NTEEKMKTYWTKTFDRIVGNKNWEEITIREFIELRHAGLTCYAIADY 89 (126)
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHHHHhcccHhHhhHHHHHHHHhcCCChHHHHHH
Confidence 45666665 4456667777788888766543 47889999887 67777776664
No 221
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.23 E-value=1.1e+02 Score=17.40 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHH
Q 034861 2 GTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQ 34 (81)
Q Consensus 2 G~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~ 34 (81)
|.--|.||.++|++.... =+.||.|+-.
T Consensus 15 g~dLs~lSv~EL~~RIa~-----L~aEI~R~~~ 42 (59)
T PF06698_consen 15 GEDLSLLSVEELEERIAL-----LEAEIARLEA 42 (59)
T ss_pred CCCchhcCHHHHHHHHHH-----HHHHHHHHHH
Confidence 333457889999888776 4788887754
No 222
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=26.11 E-value=1.5e+02 Score=17.41 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHH
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVV 67 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri 67 (81)
...|+.||-.+=+.-.+ . .++.+|++++.++...-|...|
T Consensus 27 ~~Vs~~EI~~~Eq~Li~-----e-G~~~eeiq~LCdvH~~lf~~~i 66 (71)
T PF04282_consen 27 SDVSASEISAAEQELIQ-----E-GMPVEEIQKLCDVHAALFKGSI 66 (71)
T ss_pred CCCCHHHHHHHHHHHHH-----c-CCCHHHHHHHhHHHHHHHHHHH
Confidence 34455555444443332 3 3777887777776666555544
No 223
>PF04870 Moulting_cycle: Moulting cycle; InterPro: IPR006954 This family contains a conserved region found in a number of uncharacterised Caenorhabditis elegans proteins.
Probab=26.03 E-value=83 Score=23.65 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
.+|+|+..++...-.|.++++|++.+|..
T Consensus 257 s~s~eQ~~emn~~Gya~l~~~Qm~~lYG~ 285 (325)
T PF04870_consen 257 SYSEEQKKEMNKTGYAFLTPKQMELLYGK 285 (325)
T ss_pred hcCHHHHHHHHhcCceeCCHHHHHHHhCC
Confidence 37888998988876677889999998853
No 224
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=25.96 E-value=59 Score=21.65 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 26 QQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 26 ~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..+|+.+=.+-..++..+.+++|.+|++++
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~ 94 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTISELKTA 94 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHH
Confidence 567777778888888866667999999885
No 225
>PRK14300 chaperone protein DnaJ; Provisional
Probab=25.56 E-value=83 Score=23.56 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCC
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~ 44 (81)
.-|.+||++.|++. +++-||.+
T Consensus 14 ~as~~eik~ayr~la~~~HPD~~ 36 (372)
T PRK14300 14 TASQADLKKAYLKLAKQYHPDTT 36 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 45789999999887 44667654
No 226
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=93 Score=23.61 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHh-hhCCC--CCCccCHHHhccc---cCCCCChhHHHHHHH
Q 034861 25 SQQEIVSLYQRFC-QLDRN--AKGFISADEFLSV---PEFAMNPLSQVVFQN 70 (81)
Q Consensus 25 s~~EI~~l~~rF~-~ld~d--~~G~l~~~ef~~i---p~l~~nPf~~ri~~~ 70 (81)
|..||++.||+-- ++-|| ++-.--.++|++| -++=.+|-.++..+.
T Consensus 29 sd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~ 80 (336)
T KOG0713|consen 29 SDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDT 80 (336)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 7899999999864 34454 3445556778776 344445555555444
No 227
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=25.39 E-value=1.4e+02 Score=17.70 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
-+..|+.. +++.+.+.++|+.|..
T Consensus 11 ~~~~L~~~---gl~~~~a~kl~~~yg~ 34 (94)
T PF14490_consen 11 LMAFLQEY---GLSPKLAMKLYKKYGD 34 (94)
T ss_dssp HHHHHHHT---T--HHHHHHHHHHH-T
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHhH
Confidence 35667776 9999999999999986
No 228
>PF04679 DNA_ligase_A_C: ATP dependent DNA ligase C terminal region ; InterPro: IPR012309 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to constitute part of the catalytic core of ATP dependent DNA ligase []. ; GO: 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 2CFM_A 1X9N_A 1VS0_B 3GDE_A 2HIX_A 2HIV_A 3L2P_A 4EQ5_A.
Probab=25.25 E-value=83 Score=18.65 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHhhhC
Q 034861 22 NLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld 40 (81)
|+||.+++..|.++...+-
T Consensus 28 tG~~~~~~~~l~~~l~~~~ 46 (97)
T PF04679_consen 28 TGFSDEELRELRERLEPLW 46 (97)
T ss_dssp SS--HHHHHHHHHHHGGGE
T ss_pred CCCCHHHHHHHHHHhhCcc
Confidence 6899999999999988763
No 229
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=25.25 E-value=97 Score=15.72 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=14.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHhhhC
Q 034861 13 IEEVQQHCHNLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 13 l~~l~~~t~T~Fs~~EI~~l~~rF~~ld 40 (81)
..++.+.. +.|+.-|.+|.++|.+..
T Consensus 20 ~~~ia~~l--gvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 20 IREIAKRL--GVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp HHHHHHHH--TS-HHHHHHHHT------
T ss_pred HHHHHHHH--CcCHHHHHHHHHHccccc
Confidence 44566663 889999999999998643
No 230
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=24.91 E-value=93 Score=22.96 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVS 31 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~ 31 (81)
+||.||+++|.+. +.+.+||..
T Consensus 107 kLt~eeIe~LK~~---g~sg~eII~ 128 (299)
T PF04189_consen 107 KLTQEEIEELKKE---GVSGEEIIE 128 (299)
T ss_pred cCCHHHHHHHHHc---CCCHHHHHH
Confidence 6999999999998 667777763
No 231
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=24.75 E-value=3e+02 Score=24.05 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhh-hCCCCCCccCH--HHhccccCCCCChhHHHHHHHhHHHH
Q 034861 25 SQQEIVSLYQRFCQ-LDRNAKGFISA--DEFLSVPEFAMNPLSQVVFQNQLMLI 75 (81)
Q Consensus 25 s~~EI~~l~~rF~~-ld~d~~G~l~~--~ef~~ip~l~~nPf~~ri~~~F~~~~ 75 (81)
.++-+..||+.|.. .+|........ ++...+-+.-.|...++|++.|..++
T Consensus 388 ~p~~~~~L~~~F~~rf~p~~~~~~~~~~~~~~~~~~~v~~~~~~~Ilr~~~~~~ 441 (1002)
T PTZ00324 388 YPEFVKLLYEDFRLGHTPERRAAITQKIEETARLKEDIRNELDRTIFSAFLSFN 441 (1002)
T ss_pred CHHHHHHHHHHHHHhhCCccchhhhhhhHHHHHHHhhcCChhHHHHHHHHHHHH
Confidence 35556678888876 46643222211 11333333344778999999998776
No 232
>PRK14281 chaperone protein DnaJ; Provisional
Probab=24.70 E-value=71 Score=24.16 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHhh-hCCCCC
Q 034861 23 LFSQQEIVSLYQRFCQ-LDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~-ld~d~~ 44 (81)
.-|.+||++.|++... +.||++
T Consensus 14 ~a~~~eikkayr~la~~~HPD~~ 36 (397)
T PRK14281 14 SADKDEIKKAYRKLALKYHPDKN 36 (397)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcC
Confidence 4588999999998854 567754
No 233
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.68 E-value=97 Score=21.54 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=24.7
Q ss_pred HHHHHHhhhCCCCCCccCHHHhcc-ccCCCCChhHHHHHHHhHHH
Q 034861 31 SLYQRFCQLDRNAKGFISADEFLS-VPEFAMNPLSQVVFQNQLML 74 (81)
Q Consensus 31 ~l~~rF~~ld~d~~G~l~~~ef~~-ip~l~~nPf~~ri~~~F~~~ 74 (81)
.+|..|+....+ ...+++.|.. ||.+-.+|-.-.|+..|..|
T Consensus 93 ~~Y~~F~~~E~~--~~~p~~aF~~~l~~~~~~~a~~~il~~ffdl 135 (198)
T cd04401 93 EVYEEFKARERR--SNYPADAFLDLLPQCLSSPAHASILYDFFDL 135 (198)
T ss_pred HHHHHHHHHHHh--cCCcHHHHHHHHhhccCChhhHHHHHHHHHH
Confidence 667778876543 3467778887 46665455444444444333
No 234
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=24.60 E-value=1.1e+02 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
-+.|+.+++++... |+++|..|-+.
T Consensus 23 widp~~~eei~~A~----TR~dIr~LIk~ 47 (150)
T COG2147 23 WIDPNEIEEIASAI----TREDIRALIKD 47 (150)
T ss_pred eeChHHHHHHHHhh----hHHHHHHHHHC
Confidence 47899999998864 89999988765
No 235
>PRK14277 chaperone protein DnaJ; Provisional
Probab=24.50 E-value=86 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHh-hhCCCCC
Q 034861 23 LFSQQEIVSLYQRFC-QLDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~-~ld~d~~ 44 (81)
.-|.+||++.|++.. +..||.+
T Consensus 16 ~a~~~eik~ayr~la~~~HPD~~ 38 (386)
T PRK14277 16 NATEEEIKKAYRRLAKKYHPDLN 38 (386)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcC
Confidence 457899999998874 4566654
No 236
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=24.47 E-value=1.2e+02 Score=15.85 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHhh-hCCCCCC
Q 034861 23 LFSQQEIVSLYQRFCQ-LDRNAKG 45 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~-ld~d~~G 45 (81)
.-+.++|++-|++... +.||..+
T Consensus 12 ~~~~~~ik~ay~~l~~~~HPD~~~ 35 (60)
T smart00271 12 DASLDEIKKAYRKLALKYHPDKNP 35 (60)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC
Confidence 4588999999988855 4676543
No 237
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=24.35 E-value=1.7e+02 Score=20.11 Aligned_cols=55 Identities=16% Similarity=-0.051 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhHHHHHhhcc
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLMLIWWGFR 80 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~~~~~~~ 80 (81)
-+++..||.+..+.+...+. .++.++..++..-++=.-.+..++.+.--.|.|++
T Consensus 188 ~g~s~~ei~~~~~~~~~~~~----~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 242 (247)
T PRK15451 188 NGYSELEISQKRSMLENVML----TDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK 242 (247)
T ss_pred cCCCHHHHHHHHHHHHhhcc----cCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhhee
Confidence 38899999887777766554 46778887764433333357777777666676654
No 238
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=24.25 E-value=95 Score=26.84 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCC
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFA 59 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~ 59 (81)
++.+|+-+.|++.+ +.|+.+++.++.++-+++-.-++-..+.++...+|-++
T Consensus 464 ~~ekee~e~L~~~~-~~l~de~~~ki~~~~~~lke~Q~~~dse~~~~~lP~l~ 515 (978)
T COG1026 464 KLEKEERELLQKRS-SELTDEDLEKIIKDSKKLKERQDQPDSEEDLATLPTLK 515 (978)
T ss_pred HHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHhhcCCCchhhhhhccccc
Confidence 36677777888877 79999999999999888743334456667777777654
No 239
>PF00513 Late_protein_L2: Late Protein L2; InterPro: IPR000784 This family includes the L2 minor capsid protein, a late protein from Human papillomavirus (HPV). HPV are dsDNA viruses with no RNA stage in their replication cycle. Their dsDNA is contained within a capsid composed of 72 L1 capsomers and about 36 L2 minor capsid proteins. L2 minor capsid proteins enter the nucleus twice during infection: in the initial phase after virion disassembly, and in the productive phase when it assembles into replicated virions along with L1 major capsid proteins. L2 proteins contain two nuclear localisation signals (NLSs), one at the N-terminal (nNLS) and the other at the C-terminal (cNLS). L2 uses its NLSs to interact with a network of karyopherins in order to enter the nucleus via several import pathways. L2 from HPV types 11 and 16 was shown to interact with karyopherins Kapbeta(2) and Kapbeta(3) [, ]. L2 capsid proteins can also interact with viral dsDNA, facilitating its release from the endocytic compartment after viral uncoating. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=24.24 E-value=48 Score=26.01 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.9
Q ss_pred cCCCCChhHHHHHHHhHHHHHhh
Q 034861 56 PEFAMNPLSQVVFQNQLMLIWWG 78 (81)
Q Consensus 56 p~l~~nPf~~ri~~~F~~~~~~~ 78 (81)
+....|-+||+|.+-++..+|+|
T Consensus 29 nKvEg~T~ADkILk~gSs~vyfG 51 (467)
T PF00513_consen 29 NKVEGNTLADKILKWGSSGVYFG 51 (467)
T ss_pred hhccCChHHHHHHHhhhhhheec
Confidence 56688999999999999999998
No 240
>CHL00195 ycf46 Ycf46; Provisional
Probab=24.18 E-value=1e+02 Score=24.25 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=32.5
Q ss_pred CHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhcc
Q 034861 9 TQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLS 54 (81)
Q Consensus 9 s~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ 54 (81)
...+++.|.+.| .+||-.||.++-..=....-..+..++.++|..
T Consensus 414 ~~~dl~~La~~T-~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~ 458 (489)
T CHL00195 414 KKYDIKKLSKLS-NKFSGAEIEQSIIEAMYIAFYEKREFTTDDILL 458 (489)
T ss_pred cccCHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 356789999998 699999999877664433222244688888875
No 241
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=24.11 E-value=1.1e+02 Score=20.94 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
-+.|++++++.... |+++|..|.+.
T Consensus 20 W~DP~~~~eI~~A~----tR~dIR~LIkd 44 (164)
T cd01417 20 WLDPNEISEISNAN----SRQSIRKLIKD 44 (164)
T ss_pred eeCHHHHHHHHHhh----hHHHHHHHHHC
Confidence 48899999999874 99999999876
No 242
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=24.07 E-value=1.2e+02 Score=17.44 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
++.+++.++-+..-...|+.||..|.++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrk 41 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRK 41 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCC
Confidence 5566666665553235677777777665
No 243
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=23.94 E-value=1.7e+02 Score=17.41 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhccc
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLSV 55 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~i 55 (81)
|-++.+... |.+|+.++....+.|.....+ ..+.|....|-.+
T Consensus 7 el~~~ia~~--~~~s~~~v~~vl~~~~~~i~~~L~~g~~V~l~gfG~F 52 (99)
T PRK00285 7 DLAEALFEK--VGLSKREAKELVELFFEEIRDALENGEQVKLSGFGNF 52 (99)
T ss_pred HHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEEE
Confidence 345666676 699999999999999885432 1335555555443
No 244
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=23.87 E-value=90 Score=18.05 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHHH
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQN 70 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~ 70 (81)
.+.|.+++.+.-..|-+.-. +|+++-+||.++-+ ...|+.+.+-+.
T Consensus 8 ~G~s~e~~~~~~~ql~Q~~~--~Gkv~~ee~n~~~e-~~p~~~~~lAk~ 53 (75)
T TIGR02675 8 SGASAEEADGALIQLSQMLA--SGKLRGEEINSLLE-ALPGALQALAKA 53 (75)
T ss_pred hCCCHHHHHHHHHHHHHHHH--cCcccHHHHHHHHH-HhHHHHHHHHHH
Confidence 47889999999999998876 89999999988743 233455555444
No 245
>PRK14280 chaperone protein DnaJ; Provisional
Probab=23.73 E-value=1.1e+02 Score=22.95 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCC
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~ 44 (81)
..|.+||++.|++. +++.||.+
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~ 37 (376)
T PRK14280 15 SASKDEIKKAYRKLSKKYHPDIN 37 (376)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 56889999999988 44566643
No 246
>PRK10767 chaperone protein DnaJ; Provisional
Probab=23.66 E-value=81 Score=23.49 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHh-hhCCCCC
Q 034861 23 LFSQQEIVSLYQRFC-QLDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~-~ld~d~~ 44 (81)
.-|.+||++.|++-. ++.||++
T Consensus 15 ~as~~eik~ayr~la~~~HPD~~ 37 (371)
T PRK10767 15 NASEDEIKKAYRKLAMKYHPDRN 37 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCC
Confidence 457899999998864 4567754
No 247
>PF15187 Augurin: Oesophageal cancer-related gene 4
Probab=23.63 E-value=56 Score=20.88 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHhhhCCC
Q 034861 25 SQQEIVSLYQRFCQLDRN 42 (81)
Q Consensus 25 s~~EI~~l~~rF~~ld~d 42 (81)
|+-|+++||..|+-+.-|
T Consensus 46 srPdVQQW~qQFlYmGFD 63 (114)
T PF15187_consen 46 SRPDVQQWYQQFLYMGFD 63 (114)
T ss_pred CCHHHHHHHHHHHHhcch
Confidence 688999999999987543
No 248
>PRK06474 hypothetical protein; Provisional
Probab=23.56 E-value=1.6e+02 Score=19.72 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCcc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFI 47 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l 47 (81)
.||+|+++++.+. |..+..+|....|.+++..
T Consensus 135 ~Lt~ee~~el~~e---------l~~ll~~y~~~~~~~~~~~ 166 (178)
T PRK06474 135 KLDEEEFEEFQSE---------LNELMIKYYNSQPKSDEIE 166 (178)
T ss_pred ecCHHHHHHHHHH---------HHHHHHHHHhCCCCCCccc
Confidence 4888888888774 7788888887766544443
No 249
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=23.52 E-value=1.7e+02 Score=17.24 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhcc
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLS 54 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~ 54 (81)
-++.+.+.. +.+|++++.++...|...-.+ ..+.+....|-.
T Consensus 6 li~~ia~~~-~~~s~~~~~~vv~~~~~~i~~~L~~g~~V~l~gfG~ 50 (94)
T PRK00199 6 LIERLAARN-PHLSAKDVENAVKEILEEMSDALARGDRIEIRGFGS 50 (94)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEE
Confidence 345565532 589999999999999874321 244565555544
No 250
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=23.45 E-value=74 Score=25.25 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=26.4
Q ss_pred HhhhCCCCCCccCHHHhccc------c--CCCCChhHHHHHHHhHHHH
Q 034861 36 FCQLDRNAKGFISADEFLSV------P--EFAMNPLSQVVFQNQLMLI 75 (81)
Q Consensus 36 F~~ld~d~~G~l~~~ef~~i------p--~l~~nPf~~ri~~~F~~~~ 75 (81)
|+-.|-|++|.|+.+||..+ + ++..++=..|.++.+..-|
T Consensus 431 F~IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl~~p~~~gl~~~~~~v~kc~ 478 (489)
T KOG2643|consen 431 FTIFDENNDGTLSHKEFLAVMKRRMHRGLELPKDTGLLRYMKAVKKCI 478 (489)
T ss_pred EEEEccCCCCcccHHHHHHHHHHHhhccccCCcccchHHHHHHHHHHH
Confidence 55557788999999999986 3 4455555555555544333
No 251
>cd07968 OBF_DNA_ligase_IV The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase IV is required for DNA non-homologous end joining pathways, including recombination of the V(D)J immunoglobulin gene segments in cells of the mammalian immune system. DNA ligase IV is stabilized by forming a complex with XRCC4, a nuclear phosphoprotein, which is phosphorylated by DNA-dependent pro
Probab=23.41 E-value=76 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 034861 22 NLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~l 39 (81)
|+||.+++..|.+++..+
T Consensus 51 tGfs~~~~~~L~~~l~~~ 68 (140)
T cd07968 51 SGFSDEELDEIRRKLKPH 68 (140)
T ss_pred cCCCHHHHHHHHHHhcCc
Confidence 799999999999999887
No 252
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=23.39 E-value=69 Score=23.91 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHhh
Q 034861 22 NLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ 38 (81)
|.|+.++++||...|+.
T Consensus 251 TAFtaeQL~RLK~EF~e 267 (342)
T KOG0493|consen 251 TAFTAEQLQRLKAEFQE 267 (342)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 69999999999999985
No 253
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=23.36 E-value=1.5e+02 Score=27.99 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHHHH------------HhhhCCCCCCccCHHHhccccC
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLYQR------------FCQLDRNAKGFISADEFLSVPE 57 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~~r------------F~~ld~d~~G~l~~~ef~~ip~ 57 (81)
+-++-++.|.+.+ =+-+-|.+.+.- |+..|||++|-|++.||.+-.+
T Consensus 4026 igkqmvd~lvess---~nvemilkffdmflklkdltssdtfkeydpdgkgiiskkdf~kame 4084 (5019)
T KOG2243|consen 4026 IGKQMVDMLVESS---NNVEMILKFFDMFLKLKDLTSSDTFKEYDPDGKGIISKKDFHKAME 4084 (5019)
T ss_pred hHHHHHHHHHHcC---ccHHHHHHHHHHHHHHhhccccccchhcCCCCCccccHHHHHHHHh
Confidence 4456677777764 356677777765 4556899999999999976533
No 254
>PHA01748 hypothetical protein
Probab=23.27 E-value=1.2e+02 Score=16.83 Aligned_cols=29 Identities=3% Similarity=0.098 Sum_probs=17.7
Q ss_pred CCCHH---HHHHHHHhhcCCCCHHHHHHHH-HHHh
Q 034861 7 MLTQY---DIEEVQQHCHNLFSQQEIVSLY-QRFC 37 (81)
Q Consensus 7 ~ls~e---~l~~l~~~t~T~Fs~~EI~~l~-~rF~ 37 (81)
.++++ +++.|.+. ++.++.|+.+-. +.|.
T Consensus 8 rLp~el~~eld~~a~~--~g~~RSE~Ir~Ai~~~~ 40 (60)
T PHA01748 8 KIEEDLLELLDRYAIK--HGLNRSEAIRKAIEKMV 40 (60)
T ss_pred ECCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 34554 56667777 488988876533 4444
No 255
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=23.16 E-value=1.4e+02 Score=16.29 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHH
Q 034861 23 LFSQQEIVSLYQRF 36 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF 36 (81)
++|+++|.+|.+++
T Consensus 54 gl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 54 GLSEEDIERLRERL 67 (68)
T ss_dssp T--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHc
Confidence 88999998888775
No 256
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.13 E-value=74 Score=23.85 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..++.++..++++++.+.-.+...|+.+|+..+
T Consensus 335 ~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~ 367 (378)
T PRK11858 335 ELSREELCELLEKVKELSERKKRSLTDEELKEL 367 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 668899999999999986544468999998865
No 257
>PRK14301 chaperone protein DnaJ; Provisional
Probab=23.09 E-value=75 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHhh-hCCCCC
Q 034861 23 LFSQQEIVSLYQRFCQ-LDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~-ld~d~~ 44 (81)
..|.+||++.|++-.. +.||++
T Consensus 15 ~a~~~~ik~ayr~la~~~HPD~~ 37 (373)
T PRK14301 15 DASEDEIKKAYRKLALQYHPDRN 37 (373)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcC
Confidence 5688999999998744 567754
No 258
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=22.87 E-value=1.7e+02 Score=21.24 Aligned_cols=28 Identities=11% Similarity=-0.038 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhhCC
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQRFCQLDR 41 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~ 41 (81)
+++..-.+. +-+++|+++|.++|....|
T Consensus 4 ~~~~~~~~~--~~~~~e~~~~l~~f~~~~~ 31 (271)
T cd04236 4 DVKAFLHQK--GGDPREARYWLTQFQIAMP 31 (271)
T ss_pred hHHHHHHHh--CCCHHHHHHHHHHhhccCC
Confidence 344444442 7799999999999999865
No 259
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=22.67 E-value=44 Score=22.97 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCHHHHHHHH
Q 034861 4 ASSMLTQYDIEEVQQHCHNLFSQQEIVSLY 33 (81)
Q Consensus 4 ~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~ 33 (81)
+.+++.+|+|=.|+.. +++++|-++|.
T Consensus 199 tvG~idee~LFYL~SR---Gl~~~eA~~Li 225 (229)
T PF01458_consen 199 TVGQIDEEQLFYLMSR---GLSEEEARKLI 225 (229)
T ss_dssp EEEES-HHHHHHHHCT---T--HHHHHHHH
T ss_pred EeecCCHHHHHHHHHc---CCCHHHHHHHH
Confidence 3447999999999998 99999998874
No 260
>PRK07058 acetate kinase; Provisional
Probab=22.57 E-value=1.7e+02 Score=22.59 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=41.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhHH
Q 034861 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~ 73 (81)
||.....+.+-.+-.|+.. .++|.+|+.++..+=.-+-.- +|. ..|+..+- -+.+|-+...+++|-+
T Consensus 237 mgtRsG~ldp~~l~~l~~~--~~~s~~el~~~Ln~~SGLlg~-sG~--s~D~R~l~-~~~d~~A~lA~d~f~y 303 (396)
T PRK07058 237 MATRCGALDPGVVLHLLKQ--EGMSLDEVEDLLYHRSGLLGV-SGI--SGDTRDLL-ASDAPEAREALDLFAL 303 (396)
T ss_pred ccCCCCCCChHHHHHHHHh--cCCCHHHHHHHHhcccCcEEe-cCC--CCCHHHHh-hcCCHhHHHHHHHHHH
Confidence 6655557889999999988 599999999876542221100 120 12344442 2347888888887754
No 261
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=22.56 E-value=35 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCC-----ccCHHHhccccCC--CCChhHHHH
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKG-----FISADEFLSVPEF--AMNPLSQVV 67 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G-----~l~~~ef~~ip~l--~~nPf~~ri 67 (81)
+|++++|++...++++..|+-.+ .++.+++.+-.+- +.+++.+.|
T Consensus 201 FF~Kedlq~~L~~~kkq~p~l~~~~~I~V~~Le~vi~~m~~~~~~~~~~~~I 252 (270)
T TIGR00995 201 YFSKEDIEQELSKFKRESPGMADSQVIMVGSMEDVLSKMETSEKDSGWEDQI 252 (270)
T ss_pred EeeHHHHHHHHHHHhHhCcCcCCCccEEEEeHHHHHHHHhccCCCCcccceE
Confidence 79999999999999999886433 3345555543333 355555443
No 262
>PRK12379 propionate/acetate kinase; Provisional
Probab=22.31 E-value=1.8e+02 Score=22.49 Aligned_cols=69 Identities=10% Similarity=-0.006 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCC-ccCHHHhccccCCCCChhHHHHHHHhHH
Q 034861 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKG-FISADEFLSVPEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G-~l~~~ef~~ip~l~~nPf~~ri~~~F~~ 73 (81)
||.....+.+-.+..|+.. .++|.+|+.++..+=.-+-. =.| .=+..|+.+-- -+.++-+...+++|-+
T Consensus 233 mgtRsG~ldp~~l~~l~~~--~~~s~~el~~~Lnk~SGLlg-~sG~s~D~R~v~~~~-~~gd~~A~lA~d~f~y 302 (396)
T PRK12379 233 MGTRSGDVDFGAMAWIASQ--TGQTLGDLERVVNKESGLLG-ISGLSSDLRVLEKAW-HEGHERAQLAIKTFVH 302 (396)
T ss_pred CCCCCCCCChHHHHHHHHh--cCCCHHHHHHHHhccccceE-ecCCCCCHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 5666667889999999988 59999999987654222211 012 12233332211 1347777777777754
No 263
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=22.21 E-value=80 Score=19.06 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHhh
Q 034861 25 SQQEIVSLYQRFCQ 38 (81)
Q Consensus 25 s~~EI~~l~~rF~~ 38 (81)
|++||.+.++.|++
T Consensus 87 t~eeI~qA~~dy~~ 100 (104)
T PF05726_consen 87 TREEIEQAFEDYQN 100 (104)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh
Confidence 78999999999985
No 264
>cd07893 OBF_DNA_ligase The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation and C-terminal OB-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core unit contains six conserved sequence motifs (I, III, IIIa, IV, V and V
Probab=22.19 E-value=89 Score=19.76 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhhhC
Q 034861 22 NLFSQQEIVSLYQRFCQLD 40 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld 40 (81)
|+||.+++..+++++..+-
T Consensus 44 tGfs~~~~~~l~~~l~~~~ 62 (129)
T cd07893 44 SGFTDEELEELRELLKELK 62 (129)
T ss_pred CCCCHHHHHHHHHHhhccc
Confidence 7999999999999998764
No 265
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=22.19 E-value=1.2e+02 Score=20.87 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
-+.|++++++.... |+++|..|.+.
T Consensus 21 WiDP~~~~eI~~A~----tR~dIR~LIkd 45 (175)
T PTZ00097 21 WLDPNEASEISLAN----SRFSIRKLIKD 45 (175)
T ss_pred eeCHHHHHHHHHhh----hHHHHHHHHHC
Confidence 48899999999874 99999999876
No 266
>PRK07914 hypothetical protein; Reviewed
Probab=22.02 E-value=3.1e+02 Score=19.70 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc-c-CCCCChh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV-P-EFAMNPL 63 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i-p-~l~~nPf 63 (81)
.++++-++.|...+ +-+-..+. ....++.-...|.|+.+++.++ . ....|.|
T Consensus 147 ~i~~~A~~~L~~~~--g~dl~~l~---~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf 200 (320)
T PRK07914 147 KVDDDTVTALLDAV--GSDLRELA---SACSQLVADTGGAVDAAAVRRYHSGKAEVKGF 200 (320)
T ss_pred CCCHHHHHHHHHHH--CccHHHHH---HHHHHHhcCCCCCcCHHHHHHHcCCCeechHH
Confidence 47788888888873 44433333 3333443323578999999885 2 2334554
No 267
>PHA03049 IMV membrane protein; Provisional
Probab=21.96 E-value=70 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=16.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHh
Q 034861 14 EEVQQHCHNLFSQQEIVSLYQRFC 37 (81)
Q Consensus 14 ~~l~~~t~T~Fs~~EI~~l~~rF~ 37 (81)
+++...-+-.+.++.|..+|+.|.
T Consensus 43 e~~kT~yvD~L~~~hl~SfyklFs 66 (68)
T PHA03049 43 EDLKTGYVDKLKSSHLNSFYKLFS 66 (68)
T ss_pred hhhhhhHHhhcCHHHHHHHHHHhc
Confidence 333333333789999999999985
No 268
>PRK14276 chaperone protein DnaJ; Provisional
Probab=21.80 E-value=1.2e+02 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHH-hhhCCCCC
Q 034861 23 LFSQQEIVSLYQRF-CQLDRNAK 44 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF-~~ld~d~~ 44 (81)
.-|.+||++.|++. +++.||.+
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~ 37 (380)
T PRK14276 15 DASQDEIKKAYRKLSKKYHPDIN 37 (380)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 45889999999987 44667654
No 269
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=21.79 E-value=55 Score=26.28 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=17.7
Q ss_pred HhhhCCCCCCccCHHHhccc
Q 034861 36 FCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 36 F~~ld~d~~G~l~~~ef~~i 55 (81)
|.-+|.|.+|.|+.+||.+.
T Consensus 553 F~~iD~D~SG~isldEF~~a 572 (631)
T KOG0377|consen 553 FNIIDADNSGEISLDEFRTA 572 (631)
T ss_pred HHHhccCCCCceeHHHHHHH
Confidence 88899999999999999764
No 270
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=21.71 E-value=40 Score=18.80 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHhhcCCCCHHHHHHHH
Q 034861 8 LTQYDIEEVQQHCHNLFSQQEIVSLY 33 (81)
Q Consensus 8 ls~e~l~~l~~~t~T~Fs~~EI~~l~ 33 (81)
++++.+++|+. +.|++|+..+.
T Consensus 4 ~~~~~~~~i~~----GmTk~qV~~lL 25 (71)
T PF04355_consen 4 LTQEQLAQIKP----GMTKDQVRALL 25 (71)
T ss_dssp TTSHHHTTT-T----TSBHHHHHHHH
T ss_pred CCHHHHHhhcC----CCCHHHHHHhc
Confidence 44455555543 56777776654
No 271
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=21.70 E-value=2.7e+02 Score=18.87 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhHHHH
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLMLI 75 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~~~ 75 (81)
.+|.+|.+-|..-|..--=|-.-+++..|+.+..+++.+-+.+++=++-..++
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISkst~~ehLRrAe~Kl~ 207 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKSTLSEHLRRAERKLI 207 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 48899999988888885434455899999999999998888888877655443
No 272
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.40 E-value=89 Score=23.23 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV 55 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i 55 (81)
..+++++..++++++++.-.+...|+.+|+..+
T Consensus 332 ~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~ 364 (365)
T TIGR02660 332 PLSEEEAAALLPAVRAFATRLKRPLSDAELIAL 364 (365)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHh
Confidence 568899999999999986544458999988754
No 273
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=21.37 E-value=2.1e+02 Score=22.17 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCC-ccCHHHhccccCCCCChhHHHHHHHhHH
Q 034861 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKG-FISADEFLSVPEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G-~l~~~ef~~ip~l~~nPf~~ri~~~F~~ 73 (81)
||.....+.+..+..|... .++|.+|+.++..+=.-+-.- +| .=+..|+.+-. -+.||-+...+++|-+
T Consensus 242 mgtRsG~lDp~~~~~l~~~--~~~s~~e~~~~Ln~~SGLlg~-sG~s~D~Rel~~~~-~~gd~~A~lA~~~f~y 311 (404)
T TIGR00016 242 MGTRSGDIDPAIISYLAET--LGMSADDIENTLNKKSGLLGI-SGLSSDLRDIEDAY-AEGNEQAQLAIKMYVH 311 (404)
T ss_pred CCCCCCCCChHHHHHHHHh--cCCCHHHHHHHHhhcccceEe-cCCCCCHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 5666667889999999888 599999999876542222110 22 22233332211 1347877777777754
No 274
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=21.29 E-value=1.4e+02 Score=22.65 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=35.5
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHH---HhhhCCCCCCccCHHHhccccCCCCChhHHHHHHHhHH
Q 034861 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQR---FCQLDRNAKGFISADEFLSVPEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r---F~~ld~d~~G~l~~~ef~~ip~l~~nPf~~ri~~~F~~ 73 (81)
||+....+.+..+-.|... .++|.+|+.++..+ +..+.. -.=+..++.+-. -..++-+...+++|-+
T Consensus 235 m~tRsG~ldp~~~~~l~~~--~~~s~~e~~~~l~~~sGL~g~sG---~s~D~r~i~~~~-~~gd~~A~la~d~~~y 304 (388)
T PF00871_consen 235 MGTRSGDLDPGVLLYLCRS--GGMSADELERLLNKESGLLGLSG---ISNDMREIEARI-EEGDERAKLALDAFAY 304 (388)
T ss_dssp -SSB--S--THHHHHHHHH--CT--HHHHHHHHHHSSHHHHHHS---SSS-HHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHh--cCCCHHHHHHHHHhccCcEeccC---CCCCHHHHHHHH-hcCCHHHHHHHHHHHH
Confidence 5555557888999999988 59999999987654 222221 011233333211 1467778888887754
No 275
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=21.24 E-value=1e+02 Score=22.02 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
.||.++.++ |++|.+|+.++|..
T Consensus 98 pDL~~va~~--~gls~~evI~~Hs~ 120 (223)
T COG2049 98 PDLAEVARH--NGLSVEEVIELHSS 120 (223)
T ss_pred CCHHHHHHH--cCCCHHHHHHHhcC
Confidence 368889998 69999999999865
No 276
>PRK02287 hypothetical protein; Provisional
Probab=21.17 E-value=1.2e+02 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~l 39 (81)
.|+.|-|+.|.++. |.+||..+-+.|...
T Consensus 141 ~lN~elLe~Y~~~~----~~~ev~~~q~~~~~~ 169 (171)
T PRK02287 141 ELNKEPLEAYARAK----DSEEIVEIQKEYLGK 169 (171)
T ss_pred HHHHHHHHHHHccC----CHHHHHHHHHHHHhh
Confidence 37788899999875 899999988888653
No 277
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.16 E-value=1e+02 Score=21.59 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHhhhCCCC-CC---ccCHHHhccc----cCCCCChhHHHHHHHh
Q 034861 22 NLFSQQEIVSLYQRFCQLDRNA-KG---FISADEFLSV----PEFAMNPLSQVVFQNQ 71 (81)
Q Consensus 22 T~Fs~~EI~~l~~rF~~ld~d~-~G---~l~~~ef~~i----p~l~~nPf~~ri~~~F 71 (81)
-++.+.-|+++++..+.++.++ +| .+..+||-.| ..=.+.|++.-+|++=
T Consensus 5 enlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmK 62 (223)
T KOG0423|consen 5 ENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMK 62 (223)
T ss_pred cCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeeh
Confidence 4788999999999999997654 34 5667788665 2335678888777763
No 278
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=21.11 E-value=1.3e+02 Score=23.09 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=24.6
Q ss_pred CCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHH
Q 034861 2 GTASSMLTQYDIEEVQQHCHNLFSQQEIVSLY 33 (81)
Q Consensus 2 G~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~ 33 (81)
|++.+++.+|+|=.|+.. +++++|-++|.
T Consensus 362 gATvG~ldee~LFYL~SR---Gi~~~~A~~Ll 390 (424)
T PRK10948 362 GATVGRIDDEQLFYLRSR---GINQQDAQQMI 390 (424)
T ss_pred eeecCCCCHHHHHHHHHc---CCCHHHHHHHH
Confidence 455668999999999998 99999998875
No 279
>PF09208 Endonuc-MspI: Restriction endonuclease MspI ; InterPro: IPR015291 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as MspI, which recognises the palindromic tetranucleotide sequence 5'-CCGG and cleave between the first and second nucleotides, leaving 2 base 5' overhangs. They fold into an alpha/beta architecture, with a five-stranded mixed beta-sheet sandwiched on both sides by alpha-helices []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1YFI_B 1SA3_A.
Probab=20.81 E-value=1.3e+02 Score=22.16 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCH--HHhccccCCCCChhHHHHHHHhHH
Q 034861 12 DIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISA--DEFLSVPEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 12 ~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~--~ef~~ip~l~~nPf~~ri~~~F~~ 73 (81)
+++.+... +..+..+++++.+.|++...-+ .++. ++-..+.+-.-+|+.+++++=|-+
T Consensus 134 ~ve~~~~~--l~~~dsdl~~llr~fQ~~gs~k--~f~~~~~~~~~~L~~eL~~y~ekli~w~~~ 193 (263)
T PF09208_consen 134 DVETFINV--LKISDSDLSELLRKFQKVGSKK--KFSPEQKQRLKILEKELNPYNEKLIRWFVT 193 (263)
T ss_dssp -HHHHHHH--HT--TTHHHHHHHHHHHHTSST--TS-HHHHHHHHHH---HGGGHHHHHHHHHH
T ss_pred cHHHHHHH--hCCChHHHHHHHHHHHhhcchh--hccccccchhHHHHHhhhhHHHHHHHHHHh
Confidence 45566665 3778889999999999976422 3433 233334444578999999886644
No 280
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.80 E-value=76 Score=17.49 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQ 38 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ 38 (81)
.+|-++|.+....- ..-=..||..+.+||+.
T Consensus 7 ~ls~~eL~~rl~~L-D~~ME~Eieelr~RY~~ 37 (49)
T PF11629_consen 7 FLSYEELQQRLASL-DPEMEQEIEELRQRYQA 37 (49)
T ss_dssp GS-HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 46667776655442 34446799999998875
No 281
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=20.66 E-value=1.1e+02 Score=17.72 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhCCCC------CCccCHHHhccccC---CCCChhHHHHHHHhHHHH
Q 034861 27 QEIVSLYQRFCQLDRNA------KGFISADEFLSVPE---FAMNPLSQVVFQNQLMLI 75 (81)
Q Consensus 27 ~EI~~l~~rF~~ld~d~------~G~l~~~ef~~ip~---l~~nPf~~ri~~~F~~~~ 75 (81)
+|.-.+-.+...+.|+- .|.+...+=.++-+ --+.|+|+||-+.|...|
T Consensus 2 ~eFa~~~~r~l~l~p~~VK~~eea~vV~V~drirVse~GVEGsGPlAerv~~ly~eyi 59 (64)
T PF14894_consen 2 REFAEYLERELNLFPGMVKVYEEANVVVVMDRIRVSENGVEGSGPLAERVYDLYNEYI 59 (64)
T ss_dssp HHHHHHHHH---HSTTTEEEETTTTEEEETTTEEEETTEEE--SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccCccceEEeccCCEEEEeeeEEEeccccccCChHHHHHHHHHHHHH
Confidence 34555566666677642 22332222222211 146899999999987654
No 282
>PRK07157 acetate kinase; Provisional
Probab=20.61 E-value=2.2e+02 Score=22.01 Aligned_cols=69 Identities=17% Similarity=0.082 Sum_probs=41.9
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCC-ccCHHHhccccCCCCChhHHHHHHHhHH
Q 034861 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKG-FISADEFLSVPEFAMNPLSQVVFQNQLM 73 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G-~l~~~ef~~ip~l~~nPf~~ri~~~F~~ 73 (81)
||.....+.+-.+-.|+.. .++|.+|++++..+=.-+-.- +| .=+..|+..-. -+.+|-+...+++|-+
T Consensus 235 mgtRsG~ldp~~~~~l~~~--~~~s~~e~~~~Ln~~SGLlg~-sG~s~D~R~l~~~~-~~gd~~A~lA~d~f~y 304 (400)
T PRK07157 235 MGTRSGDIDPSIHEFVAKE--ANMSISEFTDLLNKKSGLLGV-SGISSDLRDVIKAA-ESGNKRAKFALDLYAQ 304 (400)
T ss_pred CCCCCCCCChHHHHHHHHh--cCCCHHHHHHHHhhccCceEe-cCCCCcHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 5666667889999999888 599999999876542222110 12 11233332211 1347777777777754
No 283
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=20.58 E-value=17 Score=25.98 Aligned_cols=19 Identities=37% Similarity=0.819 Sum_probs=14.5
Q ss_pred ChhHHHHHHHhHHHHHhhc
Q 034861 61 NPLSQVVFQNQLMLIWWGF 79 (81)
Q Consensus 61 nPf~~ri~~~F~~~~~~~~ 79 (81)
..+.+.....-|.|||||-
T Consensus 54 HGLse~rLa~tDVLiWWGH 72 (261)
T COG4813 54 HGLSEERLAKTDVLIWWGH 72 (261)
T ss_pred cCccHhhhhccceEEEecc
Confidence 3466666777899999995
No 284
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=20.56 E-value=2.2e+02 Score=18.21 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHhhcCCCCHHHHHHHHH
Q 034861 6 SMLTQYDIEEVQQHCHNLFSQQEIVSLYQ 34 (81)
Q Consensus 6 S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~ 34 (81)
+.+++++++-+.++ |+.|+++-.+..+
T Consensus 73 ~~i~~edI~lv~~q--~gvs~~~A~~AL~ 99 (115)
T PRK06369 73 VEIPEEDIELVAEQ--TGVSEEEARKALE 99 (115)
T ss_pred CCCCHHHHHHHHHH--HCcCHHHHHHHHH
Confidence 46889999999999 5999999887665
No 285
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=20.52 E-value=2e+02 Score=17.03 Aligned_cols=43 Identities=16% Similarity=0.035 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCC---CCCccCHHHhccc
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRN---AKGFISADEFLSV 55 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d---~~G~l~~~ef~~i 55 (81)
|-++.+.+. +.+|+.+++.+...|...-.+ ..+.+...+|-.+
T Consensus 6 eli~~ia~~--~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG~F 51 (96)
T TIGR00987 6 EMSEYLFDE--LGLSKREAKELVELFFEEIRRALENGEQVKLSGFGNF 51 (96)
T ss_pred HHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHcCCeEEecCCEEE
Confidence 345666776 699999999999999874321 2345665655443
No 286
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=20.46 E-value=2.1e+02 Score=22.27 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=28.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 034861 1 MGTASSMLTQYDIEEVQQHCHNLFSQQEIVSLYQR 35 (81)
Q Consensus 1 MG~~~S~ls~e~l~~l~~~t~T~Fs~~EI~~l~~r 35 (81)
||..+..+.|--+..|.++ ++.|.+||..+..+
T Consensus 236 MGTRsGdiDP~ii~~l~~~--~~~s~~~i~~~LNk 268 (396)
T COG0282 236 MGTRSGDIDPGIILYLMEQ--EGMSAEEIDTLLNK 268 (396)
T ss_pred ccCCCCCCChHHHHHHHHh--cCCCHHHHHHHHhh
Confidence 7887778999999999998 69999999987653
No 287
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=20.42 E-value=2.2e+02 Score=22.67 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~l 39 (81)
.+++|+++.+++.+-=.++++|++++-+.+.++
T Consensus 388 ~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~I 420 (477)
T PRK12821 388 QLNKDELKKLARLVMFDLDDAELEKLQVEFKDI 420 (477)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 488899998888752378899999888887764
No 288
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=20.40 E-value=1.7e+02 Score=16.77 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhc
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFL 53 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~ 53 (81)
.|++|-...|.+.. .+-=+||.+==.+|+.+++ ..+|+.+|+-
T Consensus 20 ~l~de~a~~La~dv--eyrlreiiq~a~kfm~hsk--R~~Lt~~Di~ 62 (66)
T PF02969_consen 20 NLSDEAAKALAEDV--EYRLREIIQEALKFMRHSK--RTKLTTDDIN 62 (66)
T ss_dssp -B-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSB-HHHHH
T ss_pred CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhC--CCCCCHHHHH
Confidence 47778777887773 7778888888899999997 6789988874
No 289
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=20.39 E-value=3.3e+02 Score=19.35 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCCCccCHHHhccc-cCCCCChh
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSV-PEFAMNPL 63 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~i-p~l~~nPf 63 (81)
.++++.++.|... ++-+-..+.+-.++...+...+++.|+.+++..+ +....|.|
T Consensus 149 ~i~~~a~~~L~~~--~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~~~~if 204 (326)
T PRK07452 149 KLTPEAAELLAEA--VGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNTTQNSL 204 (326)
T ss_pred CCCHHHHHHHHHH--hCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccCcCcHH
Confidence 4778888889888 4767666655555555443223668999999885 44445544
No 290
>TIGR01926 peroxid_rel uncharacterized peroxidase-related enzyme. This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.
Probab=20.25 E-value=1.8e+02 Score=18.72 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHhhcCCCCHHHHHHH
Q 034861 7 MLTQYDIEEVQQHCHNLFSQQEIVSL 32 (81)
Q Consensus 7 ~ls~e~l~~l~~~t~T~Fs~~EI~~l 32 (81)
..++++++.+.+. +||.+||..+
T Consensus 131 ~v~~~~~~~l~~~---g~s~~eivel 153 (177)
T TIGR01926 131 KVNEADFAALRAA---GFSDLDILDL 153 (177)
T ss_pred cCCHHHHHHHHHc---CCCHHHHHHH
Confidence 4566677777665 6777777644
No 291
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=20.19 E-value=2.6e+02 Score=18.17 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHhhhCCCCC-------------CccCHHHhccccCCC-----CChhHHHHHHHhH
Q 034861 11 YDIEEVQQHCHNLFSQQEIVSLYQRFCQLDRNAK-------------GFISADEFLSVPEFA-----MNPLSQVVFQNQL 72 (81)
Q Consensus 11 e~l~~l~~~t~T~Fs~~EI~~l~~rF~~ld~d~~-------------G~l~~~ef~~ip~l~-----~nPf~~ri~~~F~ 72 (81)
+++++... .++.+++.++.+.=+.=..|.+ ..++.+++.++|++. --|+.+|-++-.+
T Consensus 49 ~~l~~~i~----~L~~~~l~~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~ 124 (141)
T PF08625_consen 49 EELDEVIK----KLDDEQLEKLLRFIRDWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLD 124 (141)
T ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHH
Confidence 34555444 6789999988876555444421 156678888888764 4688888887776
Q ss_pred HHH
Q 034861 73 MLI 75 (81)
Q Consensus 73 ~~~ 75 (81)
.|+
T Consensus 125 ~L~ 127 (141)
T PF08625_consen 125 RLL 127 (141)
T ss_pred HHH
Confidence 653
No 292
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=20.15 E-value=1.8e+02 Score=21.60 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhh--cCCCCHHHHHHHHHHHhhhCCCC
Q 034861 7 MLTQYDIEEVQQHC--HNLFSQQEIVSLYQRFCQLDRNA 43 (81)
Q Consensus 7 ~ls~e~l~~l~~~t--~T~Fs~~EI~~l~~rF~~ld~d~ 43 (81)
+|++++++.|...- ....+++++..+.+.|.......
T Consensus 33 ~L~~~ei~~l~~~m~~l~~v~~~~~~~vl~eF~~~~~~~ 71 (338)
T TIGR00207 33 HLSQEEIETLSAEIANVTQIDNQQKDDVLEEFEQIAEAQ 71 (338)
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Confidence 69999999875541 14899999999999999876543
No 293
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.12 E-value=1.2e+02 Score=19.96 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHhhhCCCCCCccCHHHhccccCCCCC
Q 034861 23 LFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMN 61 (81)
Q Consensus 23 ~Fs~~EI~~l~~rF~~ld~d~~G~l~~~ef~~ip~l~~n 61 (81)
.||++|-..+-.+=..+.+ .+|++|..++..+-.+..|
T Consensus 4 ~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~TGasR~ 41 (127)
T PF06163_consen 4 VFTPEEREELKARIVELVR-EHGRITIKQLVAKTGASRN 41 (127)
T ss_pred cCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHCCCHH
Confidence 3455555555555455544 3566666666655444444
No 294
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=20.01 E-value=2.2e+02 Score=17.34 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhh--cCCCCHHHHHHHHHHHhhh
Q 034861 7 MLTQYDIEEVQQHC--HNLFSQQEIVSLYQRFCQL 39 (81)
Q Consensus 7 ~ls~e~l~~l~~~t--~T~Fs~~EI~~l~~rF~~l 39 (81)
.|++++++.+...- ....+++++..+.+.|...
T Consensus 29 ~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~ 63 (108)
T PF14842_consen 29 HLDEEEIERISREMAKLGSVSPEEVEEVLEEFYDE 63 (108)
T ss_dssp HS-HHHHHHHHHHHHT-----HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 47888888774321 1478899999999999984
Done!