Query 034862
Match_columns 81
No_of_seqs 126 out of 191
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 11:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xu2_R Tumor necrosis factor r 29.5 18 0.00061 21.2 0.9 20 27-46 20-39 (47)
2 2htq_A Neuraminidase; zanamivi 27.2 26 0.00088 28.2 1.6 17 55-71 187-203 (390)
3 4b7j_A Neuraminidase; hydrolas 26.9 20 0.0007 29.3 1.1 16 55-70 269-284 (469)
4 1f8d_A Neuraminidase; hydrolas 20.8 22 0.00074 28.6 0.1 17 55-71 188-204 (388)
5 1v0z_A Neuraminidase; glycosid 20.8 22 0.00074 28.6 0.1 17 55-71 188-204 (389)
6 2h9e_C Anti-coagulant protein 20.6 9.4 0.00032 23.5 -1.6 49 21-73 13-78 (84)
7 4gdi_A Neuraminidase; influenz 19.2 23 0.0008 28.2 -0.0 16 55-70 190-205 (373)
8 1nmb_N N9 neuraminidase; compl 18.9 35 0.0012 28.0 0.9 17 55-71 270-286 (470)
9 3tia_A Neuraminidase; 6-bladed 18.8 25 0.00085 28.8 0.1 17 55-71 268-284 (469)
10 3sal_A Neuraminidase; 6-bladed 18.7 22 0.00076 28.6 -0.3 17 54-70 187-203 (395)
No 1
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=29.52 E-value=18 Score=21.24 Aligned_cols=20 Identities=30% Similarity=0.856 Sum_probs=16.5
Q ss_pred hhHHHhcCCchhHHHHHHHh
Q 034862 27 CNRRCKESSRKNMCHRACRT 46 (81)
Q Consensus 27 C~~RCs~~~~~~~C~~~C~~ 46 (81)
|..||+.+..+..|-.||..
T Consensus 20 C~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHHC
T ss_pred hhcccCCCCCcchHHHHHhh
Confidence 88899977778889999863
No 2
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=27.15 E-value=26 Score=28.18 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 034862 55 PPGTYGNKQACPCYASL 71 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~m 71 (81)
.+|+.+|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999764
No 3
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=26.87 E-value=20 Score=29.31 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCcccc
Q 034862 55 PPGTYGNKQACPCYAS 70 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~ 70 (81)
.+|+..|.|||.||.+
T Consensus 269 l~gs~~HiEECSCY~~ 284 (469)
T 4b7j_A 269 MNAPNYHYEECSCYPD 284 (469)
T ss_dssp CCCTTCCCCSCEEEEE
T ss_pred cCCCcccceeeeeccC
Confidence 5789999999999976
No 4
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=20.85 E-value=22 Score=28.58 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 034862 55 PPGTYGNKQACPCYASL 71 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~m 71 (81)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999765
No 5
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=20.78 E-value=22 Score=28.58 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCccccc
Q 034862 55 PPGTYGNKQACPCYASL 71 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~m 71 (81)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 47889999999999765
No 6
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=20.59 E-value=9.4 Score=23.49 Aligned_cols=49 Identities=29% Similarity=0.684 Sum_probs=20.6
Q ss_pred CCchH-HhhHHHhcC-------Cc-hhHH-HHHHHhhcCcccccCCCCCCCC-------CCCCccccccc
Q 034862 21 INCSQ-ACNRRCKES-------SR-KNMC-HRACRTCCKRCHCVPPGTYGNK-------QACPCYASLRT 73 (81)
Q Consensus 21 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~kC~CVP~GTyGnk-------~~CPCY~~m~t 73 (81)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-..
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~ 78 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFI 78 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEE
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeE
Confidence 46998 999999863 22 3578 66665 567775 4888773 46888765443
No 7
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=19.16 E-value=23 Score=28.24 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCcccc
Q 034862 55 PPGTYGNKQACPCYAS 70 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~ 70 (81)
.+|+..|.|||.||.+
T Consensus 190 l~~s~~HiEECSCYp~ 205 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTI 205 (373)
T ss_dssp CCCTTCCCEEEEEEEE
T ss_pred cCCCCCCceeeeecCC
Confidence 3688899999999965
No 8
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=18.87 E-value=35 Score=28.01 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCccccc
Q 034862 55 PPGTYGNKQACPCYASL 71 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~m 71 (81)
.+|+..+.|||.||-+.
T Consensus 270 l~~~~~HiEECscy~~~ 286 (470)
T 1nmb_N 270 LTGTAKHIEECSCYGEQ 286 (470)
T ss_dssp CCSSCSCCCSCEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999754
No 9
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=18.76 E-value=25 Score=28.82 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCccccc
Q 034862 55 PPGTYGNKQACPCYASL 71 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~m 71 (81)
.+|+.++.|||.||-+.
T Consensus 268 l~~~~~HiEECSCYp~~ 284 (469)
T 3tia_A 268 LSGSAQHIEECSCYPRY 284 (469)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCCccceeeeecCCC
Confidence 57888999999999653
No 10
>3sal_A Neuraminidase; 6-bladed beta-propeller, hydrolase, calcium binding, glycosy; HET: NAG BMA; 1.50A {Influenza a virus} PDB: 3san_A* 3ti8_A* 4gb1_A* 3o9j_A* 3o9k_A*
Probab=18.66 E-value=22 Score=28.58 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.2
Q ss_pred cCCCCCCCCCCCCcccc
Q 034862 54 VPPGTYGNKQACPCYAS 70 (81)
Q Consensus 54 VP~GTyGnk~~CPCY~~ 70 (81)
.++|..++.|||.||-+
T Consensus 187 ~l~~~~qHiEECSCYp~ 203 (395)
T 3sal_A 187 EVSFQGGHIEECSCYPN 203 (395)
T ss_dssp EECCTTCCCEEEEEEEE
T ss_pred ecCCCCccceeeeecCC
Confidence 35788899999999965
Done!