Query 034862
Match_columns 81
No_of_seqs 126 out of 191
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 11:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034862.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034862hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jv2b5 g.3.11.6 (B:563-605) I 51.0 2.9 0.00021 22.6 1.2 19 48-66 21-40 (43)
2 d2h9ec1 g.22.1.1 (C:6-83) Anti 44.2 0.89 6.5E-05 26.3 -1.8 52 22-74 9-74 (78)
3 d1xu2r_ g.24.1.2 (R:) Tumor ne 36.3 5.7 0.00041 20.9 0.9 19 27-45 17-35 (36)
4 d2aepa1 b.68.1.1 (A:83-469) In 29.3 5.7 0.00042 30.0 0.2 18 54-71 185-202 (387)
5 d1f8ea_ b.68.1.1 (A:) Influenz 26.2 7.1 0.00051 29.5 0.2 17 55-71 188-204 (388)
6 d2heyr3 g.24.1.1 (R:29-82) Tum 23.4 5 0.00037 21.8 -0.9 24 45-71 12-43 (54)
7 d1kloa3 g.3.11.2 (A:122-172) L 18.1 18 0.0013 18.9 0.7 21 51-71 1-28 (51)
8 d2c7na1 g.39.1.15 (A:18-73) Ra 18.0 10 0.00073 21.5 -0.4 16 57-72 7-26 (56)
9 d1jmab1 g.24.1.1 (B:4-59) Cell 17.8 9.8 0.00072 20.3 -0.4 24 45-71 10-41 (56)
10 d1exta1 g.24.1.1 (A:13-71) Tum 17.1 8.6 0.00063 21.0 -0.8 25 46-73 16-49 (59)
No 1
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.03 E-value=2.9 Score=22.59 Aligned_cols=19 Identities=47% Similarity=1.522 Sum_probs=14.5
Q ss_pred cCcccccCCCCCCCC-CCCC
Q 034862 48 CKRCHCVPPGTYGNK-QACP 66 (81)
Q Consensus 48 C~kC~CVP~GTyGnk-~~CP 66 (81)
|++|.|--||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888865 5565
No 2
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=44.24 E-value=0.89 Score=26.27 Aligned_cols=52 Identities=23% Similarity=0.538 Sum_probs=22.2
Q ss_pred CchH-HhhHHHhcCCchhHHHHHHHh------hcCcccccCCCCCCCC-------CCCCcccccccc
Q 034862 22 NCSQ-ACNRRCKESSRKNMCHRACRT------CCKRCHCVPPGTYGNK-------QACPCYASLRTH 74 (81)
Q Consensus 22 ~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~kC~CVP~GTyGnk-------~~CPCY~~m~t~ 74 (81)
.|++ .|..-|+.-.....|...+.. |=.-|.| |+|++-|. ++|||+-+=++.
T Consensus 9 ~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 9 SCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp -------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred ccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 4664 477777655554545444433 3355777 89998765 357888665543
No 3
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.28 E-value=5.7 Score=20.90 Aligned_cols=19 Identities=32% Similarity=0.891 Sum_probs=16.8
Q ss_pred hhHHHhcCCchhHHHHHHH
Q 034862 27 CNRRCKESSRKNMCHRACR 45 (81)
Q Consensus 27 C~~RCs~~~~~~~C~~~C~ 45 (81)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7889998888999999986
No 4
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=29.33 E-value=5.7 Score=29.98 Aligned_cols=18 Identities=22% Similarity=0.624 Sum_probs=15.4
Q ss_pred cCCCCCCCCCCCCccccc
Q 034862 54 VPPGTYGNKQACPCYASL 71 (81)
Q Consensus 54 VP~GTyGnk~~CPCY~~m 71 (81)
.++|+.++.|||.||.+.
T Consensus 185 ~l~g~~~HiEECSCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEEEEEEET
T ss_pred ecCCCcCceEeeeecCCC
Confidence 367999999999999876
No 5
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=26.15 E-value=7.1 Score=29.48 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCccccc
Q 034862 55 PPGTYGNKQACPCYASL 71 (81)
Q Consensus 55 P~GTyGnk~~CPCY~~m 71 (81)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57899999999999874
No 6
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.37 E-value=5 Score=21.83 Aligned_cols=24 Identities=33% Similarity=1.002 Sum_probs=14.5
Q ss_pred HhhcCcccccCCCCCC-------CCCCC-Cccccc
Q 034862 45 RTCCKRCHCVPPGTYG-------NKQAC-PCYASL 71 (81)
Q Consensus 45 ~~CC~kC~CVP~GTyG-------nk~~C-PCY~~m 71 (81)
|.||.+| |||||- ..-+| ||-...
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gt 43 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGF 43 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTE
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCC
Confidence 5677765 788763 33566 665444
No 7
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.10 E-value=18 Score=18.93 Aligned_cols=21 Identities=33% Similarity=0.907 Sum_probs=13.6
Q ss_pred ccccCCCCCCCC-------CCCCccccc
Q 034862 51 CHCVPPGTYGNK-------QACPCYASL 71 (81)
Q Consensus 51 C~CVP~GTyGnk-------~~CPCY~~m 71 (81)
|.|-|.||.++. ..|+|-.+.
T Consensus 1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~v 28 (51)
T d1kloa3 1 CACNPYGTVQQQSSCNPVTGQCQCLPHV 28 (51)
T ss_dssp CCCCTTTBGGGCCCCCTTTCCCCBCTTE
T ss_pred CcCCCCcccCCCCccCCCCCeecCCCCC
Confidence 678888887654 356665443
No 8
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.02 E-value=10 Score=21.54 Aligned_cols=16 Identities=38% Similarity=0.887 Sum_probs=11.9
Q ss_pred CCCCC---CCCC-Ccccccc
Q 034862 57 GTYGN---KQAC-PCYASLR 72 (81)
Q Consensus 57 GTyGn---k~~C-PCY~~m~ 72 (81)
|.||| ...| .||+++.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 66775 5789 7999874
No 9
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.84 E-value=9.8 Score=20.28 Aligned_cols=24 Identities=33% Similarity=0.980 Sum_probs=14.1
Q ss_pred HhhcCcccccCCCCCCC-------CCCC-Cccccc
Q 034862 45 RTCCKRCHCVPPGTYGN-------KQAC-PCYASL 71 (81)
Q Consensus 45 ~~CC~kC~CVP~GTyGn-------k~~C-PCY~~m 71 (81)
+.||.+| |||||-. .-+| ||-...
T Consensus 10 ~~CC~~C---ppG~~~~~~C~~~~~t~C~pC~~gt 41 (56)
T d1jmab1 10 SECCPKC---SPGYRVKEACGELTGTVCEPCPPGT 41 (56)
T ss_dssp TBCCBCB---CTTEEEEECCCSSSCCEEEECCTTE
T ss_pred CeEcCCC---CCCceEcccCCCCCCCeeccCcCCC
Confidence 3466665 7888732 2357 676554
No 10
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.12 E-value=8.6 Score=20.95 Aligned_cols=25 Identities=40% Similarity=1.016 Sum_probs=16.5
Q ss_pred hhcCcccccCCCCC------CC--CCCC-Cccccccc
Q 034862 46 TCCKRCHCVPPGTY------GN--KQAC-PCYASLRT 73 (81)
Q Consensus 46 ~CC~kC~CVP~GTy------Gn--k~~C-PCY~~m~t 73 (81)
+||.+| ||||| +. .-+| ||-..-.+
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 466665 89988 42 4688 88766433
Done!