Query 034866
Match_columns 80
No_of_seqs 53 out of 55
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 07:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01766 Ufm1 Urm1-like ubiquit 100.0 6.7E-55 1.5E-59 290.8 6.5 71 5-75 1-71 (82)
2 PF03671 Ufm1: Ubiquitin fold 100.0 2.6E-53 5.7E-58 279.8 4.8 70 5-74 1-70 (76)
3 KOG3483 Uncharacterized conser 100.0 9E-50 1.9E-54 271.1 6.5 74 2-75 9-82 (94)
4 PF11976 Rad60-SLD: Ubiquitin- 96.2 0.011 2.4E-07 34.5 4.2 61 10-71 2-62 (72)
5 cd00196 UBQ Ubiquitin-like pro 94.4 0.17 3.8E-06 24.8 4.5 45 18-62 6-50 (69)
6 cd01612 APG12_C Ubiquitin-like 92.6 0.28 6E-06 31.8 4.2 68 6-73 1-70 (87)
7 PF11834 DUF3354: Domain of un 90.1 1.1 2.4E-05 28.5 5.0 39 18-60 16-54 (69)
8 cd01768 RA RA (Ras-associating 89.4 0.95 2.1E-05 27.2 4.2 37 10-46 3-39 (87)
9 PF04083 Abhydro_lipase: Parti 88.1 0.61 1.3E-05 28.6 2.7 39 38-76 3-53 (63)
10 smart00314 RA Ras association 87.7 1.7 3.6E-05 26.4 4.5 44 10-53 6-51 (90)
11 PF04110 APG12: Ubiquitin-like 84.8 1.4 3.1E-05 29.2 3.3 66 6-71 1-68 (87)
12 PF00788 RA: Ras association ( 83.2 2 4.4E-05 25.2 3.2 28 18-45 15-42 (93)
13 PRK13226 phosphoglycolate phos 81.5 0.96 2.1E-05 31.3 1.6 44 27-70 148-191 (229)
14 PF00564 PB1: PB1 domain; Int 79.8 4.6 9.9E-05 23.7 3.9 43 7-52 2-44 (84)
15 cd06406 PB1_P67 A PB1 domain i 78.6 5.5 0.00012 26.3 4.4 35 6-49 6-40 (80)
16 TIGR01428 HAD_type_II 2-haloal 78.1 1.3 2.9E-05 29.3 1.3 41 28-68 146-186 (198)
17 PF13242 Hydrolase_like: HAD-h 76.5 1.2 2.6E-05 26.2 0.7 37 31-67 5-42 (75)
18 PRK10748 flavin mononucleotide 74.0 2.5 5.5E-05 29.5 1.9 45 30-74 163-210 (238)
19 TIGR01509 HAD-SF-IA-v3 haloaci 72.9 2.6 5.5E-05 26.7 1.6 43 27-69 137-179 (183)
20 COG1872 Uncharacterized conser 71.0 3.3 7.1E-05 28.5 1.9 46 19-64 38-92 (102)
21 smart00666 PB1 PB1 domain. Pho 69.8 19 0.00041 21.1 4.8 38 7-48 2-39 (81)
22 KOG3439 Protein conjugation fa 68.6 9.8 0.00021 27.2 3.9 72 5-76 29-102 (116)
23 TIGR03351 PhnX-like phosphonat 68.1 2.7 5.9E-05 28.1 1.0 45 31-75 146-194 (220)
24 PF11470 TUG-UBL1: GLUT4 regul 67.8 9.8 0.00021 23.7 3.4 32 22-53 9-40 (65)
25 PRK09456 ?-D-glucose-1-phospha 66.7 3.4 7.3E-05 27.7 1.2 45 26-70 137-181 (199)
26 PRK14988 GMP/IMP nucleotidase; 64.8 3 6.6E-05 29.1 0.8 44 26-69 145-188 (224)
27 PRK10826 2-deoxyglucose-6-phos 64.3 4.1 9E-05 27.6 1.3 39 30-68 148-186 (222)
28 PF04050 Upf2: Up-frameshift s 63.1 5.4 0.00012 27.9 1.8 36 3-38 117-152 (170)
29 PLN02770 haloacid dehalogenase 63.0 5.5 0.00012 28.1 1.8 43 29-71 163-205 (248)
30 PRK13288 pyrophosphatase PpaX; 62.8 6.8 0.00015 26.3 2.1 45 27-71 135-179 (214)
31 TIGR01656 Histidinol-ppas hist 61.8 3.4 7.3E-05 26.9 0.5 46 29-74 100-147 (147)
32 PF13419 HAD_2: Haloacid dehal 61.4 3.6 7.8E-05 25.0 0.6 40 29-68 132-171 (176)
33 TIGR02253 CTE7 HAD superfamily 60.2 7.2 0.00016 25.9 1.9 47 29-75 149-198 (221)
34 TIGR01662 HAD-SF-IIIA HAD-supe 60.0 4.9 0.00011 25.0 1.0 43 28-70 83-127 (132)
35 TIGR01990 bPGM beta-phosphoglu 59.7 4 8.7E-05 26.2 0.6 43 27-69 138-180 (185)
36 TIGR02254 YjjG/YfnB HAD superf 58.9 9.2 0.0002 25.2 2.2 45 30-74 152-200 (224)
37 PRK08942 D,D-heptose 1,7-bisph 58.1 3.9 8.4E-05 27.2 0.3 40 29-68 102-141 (181)
38 TIGR01549 HAD-SF-IA-v1 haloaci 57.9 8.1 0.00017 24.3 1.7 38 29-67 117-154 (154)
39 TIGR02009 PGMB-YQAB-SF beta-ph 57.3 4.7 0.0001 25.9 0.6 41 29-69 141-181 (185)
40 cd01763 Sumo Small ubiquitin-r 56.1 46 0.001 20.5 5.7 66 5-74 10-75 (87)
41 PLN03243 haloacid dehalogenase 54.6 6.4 0.00014 28.7 1.0 42 29-70 164-205 (260)
42 cd01806 Nedd8 Nebb8-like ubiq 54.5 39 0.00084 19.2 4.2 50 24-74 15-64 (76)
43 TIGR02252 DREG-2 REG-2-like, H 54.5 5.4 0.00012 26.3 0.6 39 30-68 160-199 (203)
44 PRK13223 phosphoglycolate phos 54.1 12 0.00025 27.2 2.2 50 26-75 153-204 (272)
45 COG0637 Predicted phosphatase/ 53.8 5.2 0.00011 28.1 0.4 43 25-67 137-179 (221)
46 PRK11587 putative phosphatase; 52.8 9.2 0.0002 26.0 1.5 42 27-68 135-176 (218)
47 cd06537 CIDE_N_B CIDE_N domain 51.9 42 0.00092 22.4 4.5 45 17-61 1-52 (81)
48 PF07929 PRiA4_ORF3: Plasmid p 51.4 26 0.00056 23.9 3.5 57 5-61 3-61 (179)
49 PF11543 UN_NPL4: Nuclear pore 50.5 19 0.0004 22.8 2.5 54 22-75 16-73 (80)
50 TIGR01993 Pyr-5-nucltdase pyri 50.2 7.1 0.00015 25.6 0.6 40 30-69 141-180 (184)
51 PF02738 Ald_Xan_dh_C2: Molybd 49.0 46 0.00099 26.6 5.0 51 6-56 319-370 (547)
52 PRK13225 phosphoglycolate phos 48.6 11 0.00024 27.8 1.4 38 34-71 199-236 (273)
53 PRK10755 sensor protein BasS/P 48.1 7.8 0.00017 27.4 0.6 15 51-65 282-296 (356)
54 cd01615 CIDE_N CIDE_N domain, 47.7 47 0.001 21.8 4.2 45 17-61 1-53 (78)
55 cd01611 GABARAP Ubiquitin doma 46.6 22 0.00047 24.0 2.5 58 17-74 38-95 (112)
56 PRK10600 nitrate/nitrite senso 46.3 13 0.00028 28.9 1.6 16 51-66 503-518 (569)
57 cd02789 MopB_CT_FmdC-FwdD The 45.6 38 0.00083 21.5 3.4 47 29-75 29-81 (106)
58 PRK13222 phosphoglycolate phos 45.5 9.8 0.00021 25.2 0.7 41 28-68 147-187 (226)
59 PF05225 HTH_psq: helix-turn-h 45.4 6.9 0.00015 22.4 -0.0 14 36-49 19-32 (45)
60 TIGR01422 phosphonatase phosph 45.2 13 0.00029 25.7 1.4 43 27-69 153-196 (253)
61 TIGR01449 PGP_bact 2-phosphogl 44.8 9.6 0.00021 25.1 0.6 42 29-70 140-181 (213)
62 PRK09449 dUMP phosphatase; Pro 44.4 18 0.00038 24.3 1.8 40 29-68 149-190 (224)
63 PF02594 DUF167: Uncharacteris 44.4 18 0.00038 23.0 1.7 36 18-53 27-63 (77)
64 PF09338 Gly_reductase: Glycin 44.3 14 0.00029 30.8 1.5 29 34-63 290-318 (428)
65 TIGR00213 GmhB_yaeD D,D-heptos 44.3 7.9 0.00017 25.8 0.1 47 29-75 105-154 (176)
66 PF13589 HATPase_c_3: Histidin 43.2 8.8 0.00019 25.1 0.2 16 49-64 34-49 (137)
67 PRK13560 hypothetical protein; 42.3 15 0.00031 28.4 1.3 14 51-64 750-763 (807)
68 COG1184 GCD2 Translation initi 41.9 12 0.00025 29.7 0.7 47 16-63 234-290 (301)
69 cd00075 HATPase_c Histidine ki 41.9 18 0.0004 19.3 1.4 15 50-64 35-49 (103)
70 PRK05090 hypothetical protein; 41.5 23 0.00051 23.6 2.0 33 21-53 36-69 (95)
71 PRK05446 imidazole glycerol-ph 41.4 25 0.00055 27.7 2.5 50 12-62 12-62 (354)
72 PF14451 Ub-Mut7C: Mut7-C ubiq 41.3 22 0.00047 22.8 1.8 34 32-65 31-64 (81)
73 cd02786 MopB_CT_3 The MopB_CT_ 40.0 53 0.0012 20.2 3.4 40 37-76 37-82 (116)
74 PRK09467 envZ osmolarity senso 39.7 12 0.00026 27.0 0.5 14 51-64 364-377 (435)
75 PRK13478 phosphonoacetaldehyde 39.4 33 0.00072 24.2 2.7 42 29-70 157-199 (267)
76 cd01617 DCX Ubiquitin-like dom 39.4 84 0.0018 19.4 4.2 45 13-57 7-54 (80)
77 PRK06769 hypothetical protein; 39.3 11 0.00024 25.5 0.2 42 28-69 91-132 (173)
78 PF08126 Propeptide_C25: Prope 39.1 27 0.00058 25.5 2.2 42 16-66 59-102 (202)
79 COG0323 MutL DNA mismatch repa 37.6 17 0.00038 30.7 1.2 16 49-64 53-68 (638)
80 COG3850 NarQ Signal transducti 37.3 20 0.00043 31.2 1.5 19 50-68 514-532 (574)
81 PRK11360 sensory histidine kin 37.3 13 0.00028 27.0 0.3 14 51-64 536-549 (607)
82 PF01863 DUF45: Protein of unk 36.9 61 0.0013 21.8 3.5 31 9-42 3-33 (205)
83 PRK10549 signal transduction h 36.5 18 0.00039 26.3 0.9 14 51-64 387-400 (466)
84 PRK13863 type IV secretion sys 36.4 29 0.00063 29.5 2.3 23 23-45 86-112 (446)
85 PRK11100 sensory histidine kin 36.3 16 0.00034 26.2 0.7 14 50-63 402-415 (475)
86 TIGR01691 enolase-ppase 2,3-di 36.2 12 0.00026 27.1 0.0 39 30-68 152-190 (220)
87 TIGR00585 mutl DNA mismatch re 36.0 18 0.00039 26.9 0.9 15 50-64 53-67 (312)
88 PRK10935 nitrate/nitrite senso 35.9 28 0.00061 26.2 1.9 17 51-67 506-522 (565)
89 TIGR02247 HAD-1A3-hyp Epoxide 35.9 12 0.00025 25.0 -0.1 39 30-68 152-190 (211)
90 PRK09303 adaptive-response sen 35.8 15 0.00033 27.2 0.5 14 51-64 308-321 (380)
91 PRK01530 hypothetical protein; 35.8 29 0.00063 23.6 1.8 35 19-53 41-76 (105)
92 cd06411 PB1_p51 The PB1 domain 35.4 41 0.00088 22.2 2.4 28 23-50 10-37 (78)
93 cd02784 MopB_CT_PHLH The MopB_ 35.3 63 0.0014 22.1 3.4 39 38-76 45-89 (137)
94 PF02518 HATPase_c: Histidine 35.2 20 0.00042 21.4 0.8 15 49-63 38-52 (111)
95 TIGR01668 YqeG_hyp_ppase HAD s 34.8 15 0.00032 24.8 0.3 48 28-75 89-139 (170)
96 COG4585 Signal transduction hi 34.7 21 0.00046 26.3 1.1 16 51-66 313-328 (365)
97 PRK00647 hypothetical protein; 34.6 33 0.00071 23.2 1.9 35 19-53 29-64 (96)
98 PRK10563 6-phosphogluconate ph 34.6 17 0.00037 24.4 0.6 41 27-67 139-179 (221)
99 cd02794 MopB_CT_DmsA-EC The Mo 34.6 58 0.0012 20.5 3.0 38 39-76 38-81 (121)
100 PRK10604 sensor protein RstB; 34.4 20 0.00044 26.8 1.0 14 51-64 352-365 (433)
101 TIGR01457 HAD-SF-IIA-hyp2 HAD- 34.2 22 0.00048 25.3 1.1 46 30-75 178-226 (249)
102 cd01804 midnolin_N Ubiquitin-l 34.0 1.1E+02 0.0024 18.5 4.6 32 22-53 14-45 (78)
103 smart00542 FYRC "FY-rich" doma 34.0 37 0.0008 21.5 2.0 34 9-44 2-35 (86)
104 smart00271 DnaJ DnaJ molecular 33.9 15 0.00032 20.2 0.1 17 19-35 2-18 (60)
105 PRK09470 cpxA two-component se 33.7 18 0.0004 26.0 0.6 14 51-64 386-399 (461)
106 PRK11644 sensory histidine kin 33.2 23 0.0005 27.9 1.2 16 50-65 443-458 (495)
107 PLN03219 uncharacterized prote 33.1 36 0.00078 23.8 2.0 19 30-48 67-85 (108)
108 cd02793 MopB_CT_DMSOR-BSOR-TMA 32.9 72 0.0016 20.5 3.3 39 37-75 39-83 (129)
109 PLN02872 triacylglycerol lipas 32.6 65 0.0014 25.3 3.5 49 28-76 25-84 (395)
110 COG1011 Predicted hydrolase (H 32.2 29 0.00062 22.9 1.3 38 30-67 154-192 (229)
111 smart00213 UBQ Ubiquitin homol 32.2 87 0.0019 16.7 4.1 43 22-65 12-54 (64)
112 TIGR01454 AHBA_synth_RP 3-amin 32.0 18 0.00039 24.1 0.3 42 29-70 130-171 (205)
113 PF08817 YukD: WXG100 protein 31.9 46 0.00099 20.1 2.1 56 10-66 4-65 (79)
114 PRK15328 invasion protein IagB 31.8 7.6 0.00017 27.6 -1.5 25 26-50 12-36 (160)
115 PRK10364 sensor protein ZraS; 31.7 19 0.00041 26.7 0.5 14 51-64 383-396 (457)
116 cd06257 DnaJ DnaJ domain or J- 31.7 17 0.00037 19.5 0.2 16 20-35 2-17 (55)
117 cd01781 AF6_RA_repeat2 Ubiquit 31.0 86 0.0019 21.4 3.5 33 17-49 13-45 (100)
118 PRK10725 fructose-1-P/6-phosph 30.6 40 0.00087 21.7 1.8 43 29-71 141-183 (188)
119 PLN02779 haloacid dehalogenase 30.4 31 0.00068 25.2 1.4 45 27-71 199-243 (286)
120 TIGR02938 nifL_nitrog nitrogen 30.4 19 0.00042 25.5 0.3 14 51-64 426-439 (494)
121 cd06539 CIDE_N_A CIDE_N domain 30.1 1.4E+02 0.003 19.7 4.3 45 17-61 1-53 (78)
122 cd02781 MopB_CT_Acetylene-hydr 29.9 1E+02 0.0022 19.3 3.5 37 39-75 41-83 (130)
123 TIGR01548 HAD-SF-IA-hyp1 haloa 29.8 37 0.00079 22.6 1.5 31 30-60 161-191 (197)
124 TIGR01386 cztS_silS_copS heavy 29.7 21 0.00046 25.5 0.4 14 51-64 388-401 (457)
125 PLN03220 uncharacterized prote 29.5 41 0.00088 23.4 1.8 19 30-48 65-83 (105)
126 PF09967 DUF2201: VWA-like dom 29.3 84 0.0018 20.8 3.2 33 29-63 66-98 (126)
127 PRK11006 phoR phosphate regulo 29.3 23 0.00051 26.1 0.6 14 51-64 352-365 (430)
128 cd02788 MopB_CT_NDH-1_NuoG2-N7 28.9 86 0.0019 19.3 3.0 37 38-74 36-78 (96)
129 PRK10337 sensor protein QseC; 28.4 24 0.00053 25.6 0.5 14 50-63 382-395 (449)
130 cd06408 PB1_NoxR The PB1 domai 27.5 1.9E+02 0.0041 19.2 4.8 38 5-46 1-38 (86)
131 cd04642 CBS_pair_29 The CBS do 27.5 77 0.0017 18.9 2.6 31 22-56 2-32 (126)
132 cd03039 GST_N_Sigma_like GST_N 27.3 1.2E+02 0.0026 16.9 3.3 22 30-51 9-30 (72)
133 cd01769 UBL Ubiquitin-like dom 26.8 1.1E+02 0.0024 16.5 2.9 41 24-65 12-52 (69)
134 PRK01310 hypothetical protein; 26.8 58 0.0013 22.0 2.1 31 23-53 44-75 (104)
135 PRK10815 sensor protein PhoQ; 26.7 27 0.00059 27.2 0.5 14 51-64 411-424 (485)
136 PLN03192 Voltage-dependent pot 26.4 86 0.0019 26.4 3.4 35 20-57 763-797 (823)
137 COG5628 Predicted acetyltransf 25.9 60 0.0013 24.0 2.2 38 20-57 97-134 (143)
138 PF07905 PucR: Purine cataboli 25.9 64 0.0014 20.9 2.1 22 21-42 100-121 (123)
139 TIGR01458 HAD-SF-IIA-hyp3 HAD- 25.8 31 0.00067 24.8 0.7 38 30-67 179-217 (257)
140 cd04590 CBS_pair_CorC_HlyC_ass 25.5 1.4E+02 0.003 17.0 3.3 32 22-57 2-33 (111)
141 PF04002 RadC: RadC-like JAB d 25.5 43 0.00093 22.1 1.3 27 31-57 87-113 (123)
142 smart00387 HATPase_c Histidine 25.3 39 0.00085 18.3 0.9 16 50-65 39-54 (111)
143 PRK04069 serine-protein kinase 25.2 41 0.00089 22.5 1.2 14 51-64 80-93 (161)
144 PF13019 Telomere_Sde2: Telome 25.2 2.8E+02 0.0061 20.4 5.6 44 19-62 14-58 (162)
145 cd03044 GST_N_EF1Bgamma GST_N 25.0 75 0.0016 18.1 2.1 28 22-50 2-29 (75)
146 PF13518 HTH_28: Helix-turn-he 24.9 34 0.00074 18.2 0.6 14 37-50 16-29 (52)
147 COG0643 CheA Chemotaxis protei 24.7 37 0.0008 29.5 1.0 14 50-63 478-491 (716)
148 cd03052 GST_N_GDAP1 GST_N fami 24.7 1.1E+02 0.0023 17.9 2.8 24 29-52 8-31 (73)
149 PLN02940 riboflavin kinase 24.5 35 0.00075 26.4 0.8 42 29-70 149-190 (382)
150 PRK15347 two component system 24.4 30 0.00066 27.8 0.5 14 51-64 547-560 (921)
151 PRK11107 hybrid sensory histid 24.4 1.2E+02 0.0026 24.4 3.7 14 51-64 447-460 (919)
152 PF15608 PELOTA_1: PELOTA RNA 24.3 91 0.002 21.3 2.7 33 17-49 53-85 (100)
153 cd02777 MopB_CT_DMSOR-like The 24.3 1E+02 0.0022 19.5 2.8 37 39-75 42-84 (127)
154 cd04801 CBS_pair_M50_like This 24.1 95 0.0021 17.9 2.5 31 23-56 3-33 (114)
155 cd00508 MopB_CT_Fdh-Nap-like T 24.0 1.5E+02 0.0032 17.9 3.4 37 39-75 43-85 (120)
156 PF02519 Auxin_inducible: Auxi 23.9 72 0.0016 21.1 2.1 21 29-49 61-81 (100)
157 TIGR03064 sortase_srtB sortase 23.7 41 0.00089 25.1 1.0 39 36-75 57-98 (232)
158 TIGR02916 PEP_his_kin putative 23.5 33 0.00071 27.7 0.5 14 51-64 614-627 (679)
159 PF13011 LZ_Tnp_IS481: leucine 23.5 32 0.00069 22.8 0.4 15 36-50 28-42 (85)
160 PF00226 DnaJ: DnaJ domain; I 23.4 19 0.0004 20.3 -0.7 17 20-36 2-18 (64)
161 cd01791 Ubl5 UBL5 ubiquitin-li 23.2 1.9E+02 0.004 17.6 5.0 44 10-54 3-46 (73)
162 cd05992 PB1 The PB1 domain is 23.2 1.6E+02 0.0035 16.9 4.7 36 8-47 2-38 (81)
163 PRK09136 5'-methylthioadenosin 23.0 68 0.0015 23.8 2.1 26 38-63 190-215 (245)
164 COG2143 Thioredoxin-related pr 23.0 75 0.0016 24.3 2.3 23 22-44 128-153 (182)
165 PRK09835 sensor kinase CusS; P 22.8 39 0.00085 24.6 0.7 15 51-65 410-424 (482)
166 PRK09593 arb 6-phospho-beta-gl 22.8 92 0.002 25.3 2.9 28 32-63 356-383 (478)
167 COG1362 LAP4 Aspartyl aminopep 22.4 91 0.002 26.4 2.9 51 11-66 342-394 (437)
168 PRK10670 hypothetical protein; 22.2 92 0.002 21.4 2.4 33 17-49 11-43 (159)
169 PRK11073 glnL nitrogen regulat 22.1 48 0.001 23.1 1.1 14 51-64 283-296 (348)
170 TIGR01233 lacG 6-phospho-beta- 22.1 1.2E+02 0.0025 24.6 3.3 28 32-62 353-381 (467)
171 TIGR01493 HAD-SF-IA-v2 Haloaci 21.9 71 0.0015 20.4 1.7 34 29-62 138-171 (175)
172 cd03045 GST_N_Delta_Epsilon GS 21.7 1.5E+02 0.0033 16.3 2.9 22 29-50 8-29 (74)
173 PLN02811 hydrolase 21.7 53 0.0012 22.4 1.2 43 29-71 136-181 (220)
174 TIGR01491 HAD-SF-IB-PSPlk HAD- 21.7 46 0.001 21.5 0.8 38 34-71 150-187 (201)
175 KOG2239 Transcription factor c 21.3 57 0.0012 25.3 1.4 32 33-64 126-157 (209)
176 cd04761 HTH_MerR-SF Helix-Turn 21.1 16 0.00034 19.3 -1.2 30 37-67 4-33 (49)
177 PRK11466 hybrid sensory histid 21.1 40 0.00087 27.3 0.5 14 51-64 595-608 (914)
178 PF04104 DNA_primase_lrg: Euka 20.9 47 0.001 24.5 0.8 12 31-42 6-17 (260)
179 cd08071 MPN_DUF2466 Mov34/MPN/ 20.9 78 0.0017 20.7 1.8 26 32-57 83-108 (113)
180 PRK13287 amiF formamidase; Pro 20.8 79 0.0017 24.0 2.1 27 29-55 292-318 (333)
181 PF12080 GldM_C: GldM C-termin 20.7 1.4E+02 0.0031 21.2 3.2 31 4-34 54-91 (181)
182 cd06398 PB1_Joka2 The PB1 doma 20.6 2.5E+02 0.0055 18.2 5.0 42 8-53 2-48 (91)
183 PF08220 HTH_DeoR: DeoR-like h 20.5 44 0.00096 19.3 0.5 15 36-50 17-31 (57)
184 cd04602 CBS_pair_IMPDH_2 This 20.5 1.5E+02 0.0032 17.3 2.8 33 20-56 1-33 (114)
185 PRK11086 sensory histidine kin 20.5 43 0.00093 24.7 0.6 14 51-64 470-483 (542)
186 PF04218 CENP-B_N: CENP-B N-te 20.2 45 0.00098 19.4 0.5 14 37-50 26-39 (53)
187 PF14817 HAUS5: HAUS augmin-li 20.2 60 0.0013 28.0 1.4 16 34-49 5-20 (632)
188 PRK13557 histidine kinase; Pro 20.1 44 0.00096 24.4 0.5 14 51-64 327-340 (540)
189 smart00760 Bac_DnaA_C Bacteria 20.0 44 0.00096 19.3 0.4 17 33-49 3-19 (60)
No 1
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=100.00 E-value=6.7e-55 Score=290.81 Aligned_cols=71 Identities=73% Similarity=1.099 Sum_probs=69.7
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeeee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLNF 75 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhgf 75 (80)
+||||||||||||||||||+||||+|||||||||||||||||++|||||||||+||||+|||||||||||=
T Consensus 1 ~KVtFkitltSdp~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgs 71 (82)
T cd01766 1 SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS 71 (82)
T ss_pred CceEEEEEecCCCCCcceEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999993
No 2
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=100.00 E-value=2.6e-53 Score=279.79 Aligned_cols=70 Identities=80% Similarity=1.196 Sum_probs=64.5
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhg 74 (80)
+||||||+||||||+||||+||||++|||||||||||||+||++|||||||||+||||+||||+||||||
T Consensus 1 ~kvtfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhG 70 (76)
T PF03671_consen 1 GKVTFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHG 70 (76)
T ss_dssp SEEEEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-
T ss_pred CcEEEEEEEccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999
No 3
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9e-50 Score=271.08 Aligned_cols=74 Identities=72% Similarity=1.052 Sum_probs=71.8
Q ss_pred CCCceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeeee
Q 034866 2 TSRGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLNF 75 (80)
Q Consensus 2 ~~~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhgf 75 (80)
..++||+|||+|+|||||||||+||||++||||||||||||||||++||||||||||||||+|+|||||||||=
T Consensus 9 ~~g~kv~fk~tltsdpklpfkv~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgs 82 (94)
T KOG3483|consen 9 KRGSKVSFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS 82 (94)
T ss_pred cccceeEEEEEeccCCCCccceecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999993
No 4
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=96.21 E-value=0.011 Score=34.52 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=47.1
Q ss_pred EEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 10 KVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 10 KItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
+|+|.+--..+++ ++|.+.+||..+++.-|++.++|+..+....=||-=+||++|....=|
T Consensus 2 ~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~i 62 (72)
T PF11976_consen 2 TIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGI 62 (72)
T ss_dssp EEEEEETTSEEEE-EEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-
T ss_pred EEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCC
Confidence 4555555555544 589999999999999999999999777888899999999999765433
No 5
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=94.44 E-value=0.17 Score=24.77 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=37.5
Q ss_pred CCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCc
Q 034866 18 KLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINP 62 (80)
Q Consensus 18 klP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP 62 (80)
......+.++...+...|++.+++++++++...++..+.+.--+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~ 50 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDS 50 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCC
Confidence 556778888899999999999999999999988888876654443
No 6
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=92.55 E-value=0.28 Score=31.81 Aligned_cols=68 Identities=24% Similarity=0.463 Sum_probs=53.5
Q ss_pred eEEEEEEecCC-CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE-ecCCcccCcccccceeeeee
Q 034866 6 KVSFKVTLTSD-PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII-TNDGVGINPQQSAGILFIFL 73 (80)
Q Consensus 6 KVtFKItltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI-TndGiGINP~QtAG~VFlkh 73 (80)
||+.+..-++| |.+.-+...||++..|..+++|--.+.++++..|.-. -|+-.=-+|.|+-|++|=+|
T Consensus 1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~ 70 (87)
T cd01612 1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF 70 (87)
T ss_pred CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc
Confidence 45555554444 7788899999999999999999999999998887444 55544667889999988766
No 7
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=90.13 E-value=1.1 Score=28.47 Aligned_cols=39 Identities=28% Similarity=0.519 Sum_probs=31.6
Q ss_pred CCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCccc
Q 034866 18 KLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGI 60 (80)
Q Consensus 18 klP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGI 60 (80)
+.+-||+.+|++ +...|+-|+|+|+.+ + +-|.+.||-=|
T Consensus 16 ~~~GKvi~lP~S--leeLl~ia~~kfg~~-~-~~v~~~dgaeI 54 (69)
T PF11834_consen 16 RRAGKVIWLPDS--LEELLKIASEKFGFS-A-TKVLNEDGAEI 54 (69)
T ss_pred CcCCEEEEcCcc--HHHHHHHHHHHhCCC-c-eEEEcCCCCEE
Confidence 356999999975 899999999999996 3 45678887544
No 8
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=89.40 E-value=0.95 Score=27.25 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=32.3
Q ss_pred EEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCC
Q 034866 10 KVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVP 46 (80)
Q Consensus 10 KItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~ 46 (80)
||-..+.|+.+||.|.|+..+.-..|++=|++.|++.
T Consensus 3 kV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 3 RVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred EEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 4444444789999999999999999999999999997
No 9
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=88.10 E-value=0.61 Score=28.62 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=22.5
Q ss_pred hhhhhhCCCCcceeEEecCCccc------------Ccccccceeeeeeeee
Q 034866 38 FAAEEFKVPPQTSAIITNDGVGI------------NPQQSAGILFIFLNFV 76 (80)
Q Consensus 38 faAEeFkv~~~TsAiITndGiGI------------NP~QtAG~VFlkhgf~ 76 (80)
.-++.++++.+.--++|.||.=+ +....-.-|||-||..
T Consensus 3 ~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~ 53 (63)
T PF04083_consen 3 ELIEKHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLL 53 (63)
T ss_dssp HHHHHTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT
T ss_pred HHHHHcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcc
Confidence 34688899999999999999632 2334566799999974
No 10
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=87.73 E-value=1.7 Score=26.44 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=35.1
Q ss_pred EEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCC--cceeEE
Q 034866 10 KVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPP--QTSAII 53 (80)
Q Consensus 10 KItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~--~TsAiI 53 (80)
||-....+..+||.|.|+.++.-..|++=+++.|+++. ..-+++
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 44444448899999999999999999999999999964 344443
No 11
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=84.80 E-value=1.4 Score=29.19 Aligned_cols=66 Identities=24% Similarity=0.480 Sum_probs=40.8
Q ss_pred eEEEEEEecC-CCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE-ecCCcccCcccccceeee
Q 034866 6 KVSFKVTLTS-DPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII-TNDGVGINPQQSAGILFI 71 (80)
Q Consensus 6 KVtFKItlts-dpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI-TndGiGINP~QtAG~VFl 71 (80)
||+.+..-+. -|-+-=++..|-.+-+|..|++|-..+.|+.+..|.-. -|.-.--+|.|+.|+.|=
T Consensus 1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~ 68 (87)
T PF04110_consen 1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYR 68 (87)
T ss_dssp EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHH
T ss_pred CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHH
Confidence 4444444333 35555578889999999999999999999988777443 678889999999998764
No 12
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=83.24 E-value=2 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=26.3
Q ss_pred CCceeEEeeCCCCchhhhhhhhhhhhCC
Q 034866 18 KLPFKVFSVPEAAPFTVVLKFAAEEFKV 45 (80)
Q Consensus 18 klP~kvlsVPE~aPFtAVlkfaAEeFkv 45 (80)
+..||.+.|++.+.=..|++-+++.|++
T Consensus 15 ~~~~k~i~v~~~tTa~evi~~~l~k~~l 42 (93)
T PF00788_consen 15 GSTYKTIKVSSSTTAREVIEMALEKFGL 42 (93)
T ss_dssp CCSEEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 3469999999999999999999999999
No 13
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=81.45 E-value=0.96 Score=31.32 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=37.5
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
+..-|--..+..++++++++|+.+..|=|...+|...+.||--.
T Consensus 148 ~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 148 AERKPHPLPLLVAAERIGVAPTDCVYVGDDERDILAARAAGMPS 191 (229)
T ss_pred CCCCCCHHHHHHHHHHhCCChhhEEEeCCCHHHHHHHHHCCCcE
Confidence 44557778899999999999999999999889999999888644
No 14
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=79.81 E-value=4.6 Score=23.73 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred EEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeE
Q 034866 7 VSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAI 52 (80)
Q Consensus 7 VtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAi 52 (80)
|.||+.+..|-.. .+.+|.+..|..+..-.++.|+.+...-.|
T Consensus 2 ~~vK~~~~~~~~~---~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l 44 (84)
T PF00564_consen 2 VRVKVRYGGDIRR---IISLPSDVSFDDLRSKIREKFGLLDEDFQL 44 (84)
T ss_dssp EEEEEEETTEEEE---EEEECSTSHHHHHHHHHHHHHTTSTSSEEE
T ss_pred EEEEEEECCeeEE---EEEcCCCCCHHHHHHHHHHHhCCCCccEEE
Confidence 6788888887654 699999999999999999999997444333
No 15
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=78.58 E-value=5.5 Score=26.30 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=29.5
Q ss_pred eEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcc
Q 034866 6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 6 KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~T 49 (80)
||.|+-|. ++.||...||..+..=.+|.+++|+..
T Consensus 6 KV~f~~tI---------aIrvp~~~~y~~L~~ki~~kLkl~~e~ 40 (80)
T cd06406 6 KVHFKYTV---------AIQVARGLSYATLLQKISSKLELPAEH 40 (80)
T ss_pred EEEEEEEE---------EEEcCCCCCHHHHHHHHHHHhCCCchh
Confidence 67776544 689999999999999999999998543
No 16
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=78.05 E-value=1.3 Score=29.26 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|-..+.+.++++++++|+.+..|-|.=.+|-+++.+|-
T Consensus 146 ~~KP~~~~~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~ 186 (198)
T TIGR01428 146 AYKPAPQVYQLALEALGVPPDEVLFVASNPWDLGGAKKFGF 186 (198)
T ss_pred CCCCCHHHHHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCC
Confidence 34577889999999999999999888887788888888874
No 17
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=76.49 E-value=1.2 Score=26.23 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=30.9
Q ss_pred chhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccc
Q 034866 31 PFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAG 67 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG 67 (80)
|....++.|++++++++..+.+|-|+ =..|-..+.+|
T Consensus 5 P~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G 42 (75)
T PF13242_consen 5 PSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAG 42 (75)
T ss_dssp TSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTT
T ss_pred CcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcC
Confidence 77788999999999999999999888 66666666555
No 18
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=73.98 E-value=2.5 Score=29.50 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=37.6
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccc--eeeeeee
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAG--ILFIFLN 74 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG--~VFlkhg 74 (80)
-|-...+..|++++++++..+..|-|+ -.+|-+++.|| .++++++
T Consensus 163 KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 163 KPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPE 210 (238)
T ss_pred CCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCC
Confidence 488889999999999999999999888 48999999998 5555554
No 19
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=72.94 E-value=2.6 Score=26.73 Aligned_cols=43 Identities=16% Similarity=0.351 Sum_probs=35.6
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
...-|-....+.++++++++|..+..|-|.=.+|..++.+|--
T Consensus 137 ~~~KP~~~~~~~~~~~~~~~~~~~~~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 137 GRGKPDPDIYLLALKKLGLKPEECLFVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred CCCCCCHHHHHHHHHHcCCCcceEEEEcCCHHHHHHHHHcCCE
Confidence 4455777888999999999999999998877788888888853
No 20
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=71.04 E-value=3.3 Score=28.54 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=33.7
Q ss_pred CceeEEeeCCCC-chhhhhhhhhhhhCCCCcceeEEe--------cCCcccCccc
Q 034866 19 LPFKVFSVPEAA-PFTVVLKFAAEEFKVPPQTSAIIT--------NDGVGINPQQ 64 (80)
Q Consensus 19 lP~kvlsVPE~a-PFtAVlkfaAEeFkv~~~TsAiIT--------ndGiGINP~Q 64 (80)
|=.+|=+.|+.- -=.++++|-|++|++|-...-|+. ---.||||+|
T Consensus 38 Lkv~i~apP~~GKAN~~li~~Lak~~~v~kS~V~ivsGetsR~K~v~i~~i~~d~ 92 (102)
T COG1872 38 LKVRITAPPVDGKANEELIKFLAKTFGVPKSSVEIVSGETSRLKTVLIKNIDPDQ 92 (102)
T ss_pred EEEEEecCCCCcchhHHHHHHHHHHhCCCcccEEEEecCcccceEEEecCCCHHH
Confidence 455666777654 568999999999999988877772 2345666765
No 21
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=69.78 E-value=19 Score=21.14 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=31.9
Q ss_pred EEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCc
Q 034866 7 VSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQ 48 (80)
Q Consensus 7 VtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~ 48 (80)
+++|+.+..| -+.++||....|.-+..=.++.|+.+..
T Consensus 2 ~~vK~~~~~~----~~~~~~~~~~s~~dL~~~i~~~~~~~~~ 39 (81)
T smart00666 2 VDVKLRYGGE----TRRLSVPRDISFEDLRSKVAKRFGLDNQ 39 (81)
T ss_pred ccEEEEECCE----EEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 5677777555 6789999999999999999999998753
No 22
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=68.61 E-value=9.8 Score=27.17 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=60.8
Q ss_pred ceEEEEEEecCC-CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE-ecCCcccCcccccceeeeeeeee
Q 034866 5 GKVSFKVTLTSD-PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII-TNDGVGINPQQSAGILFIFLNFV 76 (80)
Q Consensus 5 ~KVtFKItltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI-TndGiGINP~QtAG~VFlkhgf~ 76 (80)
.||..+..-+-| |-|==++.+|+..--|.-|+.|--.+.|+++..|..+ -|.-..=+|+|+-|+.|.-||+-
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~~d 102 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFGTD 102 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcCCC
Confidence 566666655544 5566789999999999999999999999999999655 88899999999999999988864
No 23
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=68.06 E-value=2.7 Score=28.11 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=36.6
Q ss_pred chhhhhhhhhhhhCCC-CcceeEEecCCcccCccccccee---eeeeee
Q 034866 31 PFTVVLKFAAEEFKVP-PQTSAIITNDGVGINPQQSAGIL---FIFLNF 75 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~-~~TsAiITndGiGINP~QtAG~V---Flkhgf 75 (80)
|--..++.|+++++++ ++.+..|-|.=.+|...+.||-- .+..|+
T Consensus 146 P~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~ 194 (220)
T TIGR03351 146 PAPDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGA 194 (220)
T ss_pred CCHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCC
Confidence 6777889999999997 78889998888899999999963 344443
No 24
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=67.77 E-value=9.8 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=21.7
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEE
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
..+.|..+++...||+=|++.||+++......
T Consensus 9 ~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~ 40 (65)
T PF11470_consen 9 FKVKVTPNTTLNQVLEEACKKFGLDPSSYDLK 40 (65)
T ss_dssp EEE---TTSBHHHHHHHHHHHTT--GGG-EEE
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCccceEEE
Confidence 35678889999999999999999998854443
No 25
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=66.71 E-value=3.4 Score=27.73 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=36.4
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
+...-|-.++.+.|+++++++|+.+..|=|.=.+|..++.+|--.
T Consensus 137 ~~~~KP~p~~~~~~~~~~~~~p~~~l~vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 137 LGMRKPEARIYQHVLQAEGFSAADAVFFDDNADNIEAANALGITS 181 (199)
T ss_pred cCCCCCCHHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHcCCEE
Confidence 344468888899999999999999999977777888888888543
No 26
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=64.80 E-value=3 Score=29.13 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=35.7
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
+...-|-......|+++++++|+.+..|=|.=.||-.+..||--
T Consensus 145 ~~~~KP~p~~~~~~~~~~~~~p~~~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 145 FGYPKEDQRLWQAVAEHTGLKAERTLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred CCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHcCCe
Confidence 34456788899999999999999999987766778888888863
No 27
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=64.29 E-value=4.1 Score=27.57 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=34.0
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|-...++.++++++++|+.+..|-|.-.+|...+.||.
T Consensus 148 Kp~~~~~~~~~~~~~~~~~~~~~igDs~~Di~aA~~aG~ 186 (222)
T PRK10826 148 KPHPEVYLNCAAKLGVDPLTCVALEDSFNGMIAAKAARM 186 (222)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEcCChhhHHHHHHcCC
Confidence 355568899999999999999999998889999988884
No 28
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=63.07 E-value=5.4 Score=27.88 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCceEEEEEEecCCCCCceeEEeeCCCCchhhhhhh
Q 034866 3 SRGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKF 38 (80)
Q Consensus 3 ~~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkf 38 (80)
..++|.|.+..-.--|+-+|-|-||..+.|.+-++=
T Consensus 117 ~~~~v~F~lLtKkGnK~q~k~l~vP~ds~~A~~~~~ 152 (170)
T PF04050_consen 117 SGGKVAFTLLTKKGNKQQTKELNVPSDSSFASSVRE 152 (170)
T ss_dssp ---EEEEEEEEEETTEEEEEEEEEETTSCCCCC---
T ss_pred CCCeEEEEEEEEcCCCCCCeEEecCCccHHHHHHHH
Confidence 467999999989999999999999999999776553
No 29
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=62.97 E-value=5.5 Score=28.08 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
.-|-...+..|+|+++++|+.+.+|=|.=.||-.++.||--++
T Consensus 163 ~KP~p~~~~~a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 163 AKPHPDPYLKALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred CCCChHHHHHHHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 3577788999999999999999999887788888888887554
No 30
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=62.82 E-value=6.8 Score=26.28 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=37.5
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
.+.-|=...++.++++++++++.+..|-|.-.+|-.++.||--++
T Consensus 135 ~~~Kp~p~~~~~~~~~~~~~~~~~~~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 135 EHAKPDPEPVLKALELLGAKPEEALMVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred CCCCCCcHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 344577778889999999999999999888889999998887554
No 31
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=61.77 E-value=3.4 Score=26.91 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=36.5
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc--eeeeeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG--ILFIFLN 74 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG--~VFlkhg 74 (80)
.-|-...+..++++++++++.+..|=|+=..|..+..+| .|++.||
T Consensus 100 ~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 100 RKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred CCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 358888999999999999999999987777777777777 3555554
No 32
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=61.41 E-value=3.6 Score=25.04 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=33.7
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.-|=...++.++++++++|..+..|-|.-..|..++.+|-
T Consensus 132 ~Kp~~~~~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~~G~ 171 (176)
T PF13419_consen 132 RKPDPDAYRRALEKLGIPPEEILFVGDSPSDVEAAKEAGI 171 (176)
T ss_dssp STTSHHHHHHHHHHHTSSGGGEEEEESSHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHHHHcCCCcceEEEEeCCHHHHHHHHHcCC
Confidence 3466788999999999999999999888788888877773
No 33
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=60.15 E-value=7.2 Score=25.90 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=36.6
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce--eeeeeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~--VFlkhgf 75 (80)
.-|-..+++.|+++++++++.+..|=|+- .+|-.++.||- |++.+|+
T Consensus 149 ~KP~~~~~~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~ 198 (221)
T TIGR02253 149 EKPHPKIFYAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGK 198 (221)
T ss_pred CCCCHHHHHHHHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCC
Confidence 34777789999999999999988887776 68888888884 4444443
No 34
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=60.02 E-value=4.9 Score=25.03 Aligned_cols=43 Identities=21% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCCchhhhhhhhhhhh-CCCCcceeEEec-CCcccCcccccceee
Q 034866 28 EAAPFTVVLKFAAEEF-KVPPQTSAIITN-DGVGINPQQSAGILF 70 (80)
Q Consensus 28 E~aPFtAVlkfaAEeF-kv~~~TsAiITn-dGiGINP~QtAG~VF 70 (80)
..-|....++.+.+++ +++++.+..|-| .-..|..+..+|--+
T Consensus 83 ~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 83 CRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred CCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeE
Confidence 3457888889999999 599999999988 688888888888543
No 35
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=59.68 E-value=4 Score=26.17 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=34.2
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
...-|-..+++.+++++++++..+..|-|.-.+|-.++.+|--
T Consensus 138 ~~~kp~p~~~~~~~~~~~~~~~~~v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 138 KKGKPDPEIFLAAAEGLGVSPSECIGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred CCCCCChHHHHHHHHHcCCCHHHeEEEecCHHHHHHHHHcCCE
Confidence 3345778889999999999999999998777777777766643
No 36
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=58.89 E-value=9.2 Score=25.16 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=35.4
Q ss_pred Cchhhhhhhhhhhh-CCCCcceeEEecCC-cccCcccccce--eeeeee
Q 034866 30 APFTVVLKFAAEEF-KVPPQTSAIITNDG-VGINPQQSAGI--LFIFLN 74 (80)
Q Consensus 30 aPFtAVlkfaAEeF-kv~~~TsAiITndG-iGINP~QtAG~--VFlkhg 74 (80)
-|=....+.|++++ +++|+.+..|-|+- .+|-+++.+|- |+..+|
T Consensus 152 KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 152 KPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred CCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCC
Confidence 46667788999999 99999988887776 68888888884 555444
No 37
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=58.06 E-value=3.9 Score=27.24 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=35.9
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.-|=...+..++++++++++.+..|-|.-.+|..++.||-
T Consensus 102 ~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~ 141 (181)
T PRK08942 102 RKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGV 141 (181)
T ss_pred CCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCC
Confidence 4577899999999999999999999999899999999884
No 38
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=57.86 E-value=8.1 Score=24.31 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=29.0
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
.-|-...++.+++++++++ .+..|-|+=.+|...+.||
T Consensus 117 ~Kp~~~~~~~~~~~~~~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 117 AKPEPEIFLAALESLGLPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred CCcCHHHHHHHHHHcCCCC-CEEEEeCCHHHHHHHHHcc
Confidence 4567788999999999998 7788877655666666554
No 39
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=57.29 E-value=4.7 Score=25.86 Aligned_cols=41 Identities=22% Similarity=0.445 Sum_probs=34.4
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
.-|....+..+++++++++..+..|-|.-.+|..++.+|--
T Consensus 141 ~kp~~~~~~~~~~~~~~~~~~~v~IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 141 GKPHPETFLLAAELLGVSPNECVVFEDALAGVQAARAAGMF 181 (185)
T ss_pred CCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCe
Confidence 45777888899999999999999998887888888888753
No 40
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=56.09 E-value=46 Score=20.54 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=48.4
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhg 74 (80)
.+++.+|. +++-.-..+.|-.++|+.-|.+--|+..++|+...-. .=||-=|++.+|....=|+.|
T Consensus 10 ~~i~I~v~---~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf-~f~G~~L~~~~T~~~l~m~d~ 75 (87)
T cd01763 10 EHINLKVK---GQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRF-LFDGQRIRDNQTPDDLGMEDG 75 (87)
T ss_pred CeEEEEEE---CCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEE-EECCeECCCCCCHHHcCCCCC
Confidence 45565553 2334445678899999999999999999999876555 456999999999766544443
No 41
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=54.64 E-value=6.4 Score=28.71 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|-..++..|+++++++++.+.+|-|.=.||-.+..||--+
T Consensus 164 ~KP~Pe~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 164 GKPDPEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred CCCCHHHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHcCCEE
Confidence 356778889999999999999999988888888888888544
No 42
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=54.48 E-value=39 Score=19.19 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=38.6
Q ss_pred EeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeee
Q 034866 24 FSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 24 lsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhg 74 (80)
+.|+++..-..+-+-.+++.++|+..-.++ -+|--++..+|-...=++.|
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~~~i~~g 64 (76)
T cd01806 15 IDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAADYKLEGG 64 (76)
T ss_pred EEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHHcCCCCC
Confidence 678888888888888999999999987776 56777777777665444444
No 43
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=54.46 E-value=5.4 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=32.2
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
-|=....+.|+++++++|+.+..|-|+= .+|-..+.||-
T Consensus 160 KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~ 199 (203)
T TIGR02252 160 KPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGW 199 (203)
T ss_pred CCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCC
Confidence 4666888999999999999988887764 58888888874
No 44
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=54.06 E-value=12 Score=27.15 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=40.6
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce--eeeeeee
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~--VFlkhgf 75 (80)
++..-|=...++.++++++++++.+..|-|.-.+|...+.||- +.+..|+
T Consensus 153 ~~~~Kp~p~~~~~~~~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~ 204 (272)
T PRK13223 153 LPQKKPDPAALLFVMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGY 204 (272)
T ss_pred CCCCCCCcHHHHHHHHHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCC
Confidence 4556677778899999999999999999888888888888884 5565655
No 45
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=53.75 E-value=5.2 Score=28.14 Aligned_cols=43 Identities=26% Similarity=0.484 Sum_probs=35.4
Q ss_pred eeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 25 SVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 25 sVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
.|++.-|.-.+.-.||++++|+|+.|.+|=|.=-||-..-.||
T Consensus 137 dv~~~KP~Pd~yL~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~aAG 179 (221)
T COG0637 137 DVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQAAKAAG 179 (221)
T ss_pred HHhcCCCCCHHHHHHHHHcCCChHHeEEEecchhHHHHHHHCC
Confidence 4666678888899999999999999999988777776666555
No 46
>PRK11587 putative phosphatase; Provisional
Probab=52.76 E-value=9.2 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=35.7
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-...+..|+++++++|+.+..|=|.=.||-.++.||-
T Consensus 135 ~~~KP~p~~~~~~~~~~g~~p~~~l~igDs~~di~aA~~aG~ 176 (218)
T PRK11587 135 KRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGC 176 (218)
T ss_pred cCCCCCcHHHHHHHHHcCCCcccEEEEecchhhhHHHHHCCC
Confidence 344577888899999999999999999888888888888885
No 47
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=51.91 E-value=42 Score=22.38 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=34.3
Q ss_pred CCCceeEEeeCCCC-------chhhhhhhhhhhhCCCCcceeEEecCCcccC
Q 034866 17 PKLPFKVFSVPEAA-------PFTVVLKFAAEEFKVPPQTSAIITNDGVGIN 61 (80)
Q Consensus 17 pklP~kvlsVPE~a-------PFtAVlkfaAEeFkv~~~TsAiITndGiGIN 61 (80)
|..||||-+.-.+. -+.-++.=+++-|+++..-..+.=.||..++
T Consensus 1 ~~rpfkv~~~~r~~kkGV~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 1 PQRPFRVCDHKRTVRKGLTAASLQELLAKALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred CCCceEEecCCCCeeEeEEccCHHHHHHHHHHHhCCCCceEEEEecCCCEEc
Confidence 45678877766653 3566788899999998776677799999985
No 48
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=51.36 E-value=26 Score=23.94 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=35.6
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCC--cceeEEecCCcccC
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPP--QTSAIITNDGVGIN 61 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~--~TsAiITndGiGIN 61 (80)
.-++|||+|......=+|.|.||.+..|...=..--.-|+..- --+-.+.++.+++.
T Consensus 3 ~~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~F~~~~~~~~~~ 61 (179)
T PF07929_consen 3 KVYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWDDDHLYEFFIGGERYGIP 61 (179)
T ss_dssp EEEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT----S-EEEEEE-TTTSSE
T ss_pred eEEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcCCCEeEEEEECCCccccc
Confidence 4578999998754444999999999999876655555565532 33345667777764
No 49
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=50.51 E-value=19 Score=22.76 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=30.2
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCc--cc--Ccccccceeeeeeee
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGV--GI--NPQQSAGILFIFLNF 75 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGi--GI--NP~QtAG~VFlkhgf 75 (80)
+.+.|+...-+..+++-.+|++++|...-.+-.|..- -+ ++.+|-...=||||=
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 4457888889999999999999999876555443322 22 567777777788873
No 50
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=50.24 E-value=7.1 Score=25.57 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=33.0
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
-|--..+..++++++++|..+..|=|.=.+|..++.+|--
T Consensus 141 KP~p~~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~ 180 (184)
T TIGR01993 141 KPSPQAYEKALREAGVDPERAIFFDDSARNIAAAKALGMK 180 (184)
T ss_pred CCCHHHHHHHHHHhCCCccceEEEeCCHHHHHHHHHcCCE
Confidence 5666788999999999999988887776788888888753
No 51
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=48.97 E-value=46 Score=26.56 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=34.7
Q ss_pred eEEEEEEecCCCCCceeEEeeCCCC-chhhhhhhhhhhhCCCCcceeEEecC
Q 034866 6 KVSFKVTLTSDPKLPFKVFSVPEAA-PFTVVLKFAAEEFKVPPQTSAIITND 56 (80)
Q Consensus 6 KVtFKItltsdpklP~kvlsVPE~a-PFtAVlkfaAEeFkv~~~TsAiITnd 56 (80)
.-+-.|.|+.|-+.=..+=.++-.. ..|++.+-|||++++|++...++..|
T Consensus 319 ~~~a~v~l~~DG~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi~~~~V~v~~~d 370 (547)
T PF02738_consen 319 QSSARVRLNPDGSVTVYTGGVEMGQGSRTALAQIAAEELGIPPEDVRVVSGD 370 (547)
T ss_dssp EEEEEEEE-TTS-EEEEES--BSSSSHHHHHHHHHHHHHTS-GGGEEEEECB
T ss_pred CCcEEEEEEeCCCEEEEEecccCCcchhhhHHHHHHHHhCCChhhEEEEeCC
Confidence 3456788888887433333444433 78999999999999999999888776
No 52
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=48.57 E-value=11 Score=27.79 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=32.7
Q ss_pred hhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 34 VVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 34 AVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
.++..++++++++++.+..|=|.-.+|...+.||--++
T Consensus 199 ~~~~~~l~~~~~~p~~~l~IGDs~~Di~aA~~AG~~~I 236 (273)
T PRK13225 199 RALSQLVAREGWQPAAVMYVGDETRDVEAARQVGLIAV 236 (273)
T ss_pred HHHHHHHHHhCcChhHEEEECCCHHHHHHHHHCCCeEE
Confidence 57889999999999999999888889999998886553
No 53
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=48.14 E-value=7.8 Score=27.44 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.0
Q ss_pred eEEecCCcccCcccc
Q 034866 51 AIITNDGVGINPQQS 65 (80)
Q Consensus 51 AiITndGiGINP~Qt 65 (80)
-.|+|+|.||+|++.
T Consensus 282 i~V~D~G~Gi~~~~~ 296 (356)
T PRK10755 282 LAVEDEGPGIDESKC 296 (356)
T ss_pred EEEEECCCCCCHHHH
Confidence 456999999998743
No 54
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=47.66 E-value=47 Score=21.75 Aligned_cols=45 Identities=27% Similarity=0.540 Sum_probs=32.3
Q ss_pred CCCceeEEeeCCC-------CchhhhhhhhhhhhCCCCccee-EEecCCcccC
Q 034866 17 PKLPFKVFSVPEA-------APFTVVLKFAAEEFKVPPQTSA-IITNDGVGIN 61 (80)
Q Consensus 17 pklP~kvlsVPE~-------aPFtAVlkfaAEeFkv~~~TsA-iITndGiGIN 61 (80)
|..||||-+.-.+ .-..-++.=|++.|+++...+. +.-.||.-|+
T Consensus 1 ~~kp~kV~~~~r~~k~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVd 53 (78)
T cd01615 1 PLRPFKVCDSDRSRKKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVD 53 (78)
T ss_pred CCCCEEEecCCCCeeEEEEcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEc
Confidence 3467777765543 2356678889999999766664 4579999984
No 55
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=46.62 E-value=22 Score=24.02 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=44.8
Q ss_pred CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeee
Q 034866 17 PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 17 pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhg 74 (80)
|.+--+-.-||++..+..++.+--...++++..|.-+--++.=-.|+|+-|++|=+|+
T Consensus 38 p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~k 95 (112)
T cd01611 38 PDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHK 95 (112)
T ss_pred ccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhC
Confidence 4445577789999999999999999999999988655444444467888898886653
No 56
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=46.30 E-value=13 Score=28.91 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=12.5
Q ss_pred eEEecCCcccCccccc
Q 034866 51 AIITNDGVGINPQQSA 66 (80)
Q Consensus 51 AiITndGiGINP~QtA 66 (80)
..|.|||+||+|....
T Consensus 503 l~V~D~G~Gi~~~~~~ 518 (569)
T PRK10600 503 LSVQDNGCGVPENAER 518 (569)
T ss_pred EEEEECCCCCCccccC
Confidence 4568999999987643
No 57
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=45.55 E-value=38 Score=21.49 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=34.8
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCC-c-----ccCcccccceeeeeeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDG-V-----GINPQQSAGILFIFLNF 75 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndG-i-----GINP~QtAG~VFlkhgf 75 (80)
..|+-.+=.=.|+++++.....+.|+|+. . =+++..-.|.||+-||+
T Consensus 29 ~~~~v~i~p~dA~~lgi~~Gd~V~v~~~~G~v~~~v~~~~~v~~g~v~~~~g~ 81 (106)
T cd02789 29 ACAYCEINPEDYKLLGKPEGDKVKVTSEFGEVVVFAKENEGVPEGMVFIPMGP 81 (106)
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCCCCCEEEEeccc
Confidence 34455555556999999988888887654 1 16788888999998885
No 58
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=45.45 E-value=9.8 Score=25.16 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+.-|=-..++.+++++++++..+..|-|.-.+|-..+.+|-
T Consensus 147 ~~kp~~~~~~~~~~~~~~~~~~~i~igD~~~Di~~a~~~g~ 187 (226)
T PRK13222 147 NKKPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAGC 187 (226)
T ss_pred CCCcChHHHHHHHHHcCCChhheEEECCCHHHHHHHHHCCC
Confidence 44555678899999999999999999888788888888775
No 59
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=45.44 E-value=6.9 Score=22.37 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=9.7
Q ss_pred hhhhhhhhCCCCcc
Q 034866 36 LKFAAEEFKVPPQT 49 (80)
Q Consensus 36 lkfaAEeFkv~~~T 49 (80)
++=||++|+||..|
T Consensus 19 ~r~AA~~ygVp~sT 32 (45)
T PF05225_consen 19 IRKAAKKYGVPRST 32 (45)
T ss_dssp HHHHHHHHT--HHH
T ss_pred HHHHHHHHCcCHHH
Confidence 45689999999876
No 60
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=45.19 E-value=13 Score=25.68 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCCCchhhhhhhhhhhhCCC-CcceeEEecCCcccCccccccee
Q 034866 27 PEAAPFTVVLKFAAEEFKVP-PQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~-~~TsAiITndGiGINP~QtAG~V 69 (80)
+..-|=...+..|+++++++ ++.+..|-|.=.||--++.||--
T Consensus 153 ~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 153 PAGRPAPWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred CCCCCCHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCe
Confidence 33446677888999999995 89999998777888888888843
No 61
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=44.78 E-value=9.6 Score=25.07 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=35.2
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|=...+..++++++++++.+..|-|.=.+|-..+.||--+
T Consensus 140 ~Kp~p~~~~~~~~~~~~~~~~~~~igDs~~d~~aa~~aG~~~ 181 (213)
T TIGR01449 140 RKPHPDPLLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPS 181 (213)
T ss_pred CCCChHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHCCCeE
Confidence 446667889999999999999999988888888888888544
No 62
>PRK09449 dUMP phosphatase; Provisional
Probab=44.44 E-value=18 Score=24.28 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCchhhhhhhhhhhhCCCC-cceeEEecCC-cccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPP-QTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~-~TsAiITndG-iGINP~QtAG~ 68 (80)
.-|-...+..+++++++++ +.+..|-|+= .+|-+++.||-
T Consensus 149 ~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~ 190 (224)
T PRK09449 149 AKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGI 190 (224)
T ss_pred CCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCC
Confidence 3577788999999999854 6777776664 48889998885
No 63
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=44.42 E-value=18 Score=22.99 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCceeEEeeCCC-CchhhhhhhhhhhhCCCCcceeEE
Q 034866 18 KLPFKVFSVPEA-APFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 18 klP~kvlsVPE~-aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
.+=.+|=..|++ .-=.++++|-|+.|+||...--|+
T Consensus 27 ~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 27 ALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp -EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEEC
T ss_pred EEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEE
Confidence 333333344443 346799999999999999877665
No 64
>PF09338 Gly_reductase: Glycine/sarcosine/betaine reductase component B subunits; InterPro: IPR015417 This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions: sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin. glycine reductase: Acetyl phosphate + NH3 + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin. ; GO: 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process
Probab=44.31 E-value=14 Score=30.82 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=21.8
Q ss_pred hhhhhhhhhhCCCCcceeEEecCCcccCcc
Q 034866 34 VVLKFAAEEFKVPPQTSAIITNDGVGINPQ 63 (80)
Q Consensus 34 AVlkfaAEeFkv~~~TsAiITndGiGINP~ 63 (80)
.+-+++|.-.+.=-++.||||.+|+| ||.
T Consensus 290 r~s~~~~~la~~LgaDGaIvs~eG~G-N~d 318 (428)
T PF09338_consen 290 RVSQRAAKLAEMLGADGAIVSEEGFG-NPD 318 (428)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCC-chh
Confidence 34566666666556789999999999 875
No 65
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=44.27 E-value=7.9 Score=25.80 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=38.8
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce---eeeeeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI---LFIFLNF 75 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~---VFlkhgf 75 (80)
.-|-...++.|+++++++++.+..|=|.=.+|..++.||- ++...|+
T Consensus 105 ~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~ 154 (176)
T TIGR00213 105 RKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGK 154 (176)
T ss_pred CCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCC
Confidence 3588899999999999999999999888888988888885 3445554
No 66
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=43.19 E-value=8.8 Score=25.09 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=10.7
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
...+|.|||.||++.+
T Consensus 34 ~~i~I~DnG~Gm~~~~ 49 (137)
T PF13589_consen 34 RYIVIEDNGEGMSRED 49 (137)
T ss_dssp TEEEEEESSS---HHH
T ss_pred cEEEEEECCcCCCHHH
Confidence 4578899999999875
No 67
>PRK13560 hypothetical protein; Provisional
Probab=42.30 E-value=15 Score=28.38 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=11.5
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|+||.|..
T Consensus 750 i~V~D~G~GI~~~~ 763 (807)
T PRK13560 750 LCVADDGIGLPAGF 763 (807)
T ss_pred EEEEeCCCcCCccc
Confidence 45699999999874
No 68
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=41.93 E-value=12 Score=29.73 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=30.1
Q ss_pred CCCCceeEEeeCCCCchhhhhhhh--------hhhhCC-CCc-ceeEEecCCcccCcc
Q 034866 16 DPKLPFKVFSVPEAAPFTVVLKFA--------AEEFKV-PPQ-TSAIITNDGVGINPQ 63 (80)
Q Consensus 16 dpklP~kvlsVPE~aPFtAVlkfa--------AEeFkv-~~~-TsAiITndGiGINP~ 63 (80)
-|+-|+.....+|..|..-++... ---|-+ ||. -++|||++|+ |+|+
T Consensus 234 ~p~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~Np~fD~TP~~~Id~iITe~G~-~pp~ 290 (301)
T COG1184 234 VPKTLLDTLVEIELRDPLEVAREEPLGNLKVRNPAFDVTPPEYIDAIITELGI-IPPS 290 (301)
T ss_pred cccccCCCcceeeccChhhccccCcccCccccccccCCCcHHHhheeeecCCC-CCch
Confidence 467777777778888777664111 111333 332 3599999999 8886
No 69
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=41.90 E-value=18 Score=19.30 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.8
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
+..|+|+|.|++|..
T Consensus 35 ~v~i~d~g~g~~~~~ 49 (103)
T cd00075 35 EIRVEDNGPGIPEED 49 (103)
T ss_pred EEEEEeCCCCCCHHH
Confidence 456799999998764
No 70
>PRK05090 hypothetical protein; Validated
Probab=41.53 E-value=23 Score=23.57 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=24.2
Q ss_pred eeEEeeCCC-CchhhhhhhhhhhhCCCCcceeEE
Q 034866 21 FKVFSVPEA-APFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 21 ~kvlsVPE~-aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
-+|=.-|++ .-=.|+++|-|++|+||....-|+
T Consensus 36 v~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~ 69 (95)
T PRK05090 36 VAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIE 69 (95)
T ss_pred EEEecCCCCChHHHHHHHHHHHHhCCChhhEEEE
Confidence 344444544 356799999999999998877665
No 71
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=41.44 E-value=25 Score=27.72 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=36.3
Q ss_pred EecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEec-CCcccCc
Q 034866 12 TLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITN-DGVGINP 62 (80)
Q Consensus 12 tltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITn-dGiGINP 62 (80)
||..|+...|.+.++.+..||-.|.++-.+- +=.--.-+|+|| +|+|...
T Consensus 12 tl~~~~~~~y~~~~~~~~~l~pGV~e~L~~L-k~~G~kL~IvTNq~g~G~~~ 62 (354)
T PRK05446 12 TLIEEPPTDFQVDSLDKLAFEPGVIPALLKL-QKAGYKLVMVTNQDGLGTDS 62 (354)
T ss_pred CccCCCCccccccCcccceECcCHHHHHHHH-HhCCCeEEEEECCccccCcc
Confidence 6778888889999999999999988875443 322234589999 5666443
No 72
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=41.34 E-value=22 Score=22.82 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhhCCCCcceeEEecCCcccCcccc
Q 034866 32 FTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65 (80)
Q Consensus 32 FtAVlkfaAEeFkv~~~TsAiITndGiGINP~Qt 65 (80)
=.+-+|-..|.+|||...-.+|.-||.-.+++..
T Consensus 31 ~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~ 64 (81)
T PF14451_consen 31 GGATVKDVIESLGVPHTEVGLILVNGRPVDFDYR 64 (81)
T ss_pred CCCcHHHHHHHcCCChHHeEEEEECCEECCCccc
Confidence 3567899999999999999999999999888753
No 73
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=40.02 E-value=53 Score=20.18 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=29.0
Q ss_pred hhhhhhhCCCCcceeEEe-cCCc-----ccCcccccceeeeeeeee
Q 034866 37 KFAAEEFKVPPQTSAIIT-NDGV-----GINPQQSAGILFIFLNFV 76 (80)
Q Consensus 37 kfaAEeFkv~~~TsAiIT-ndGi-----GINP~QtAG~VFlkhgf~ 76 (80)
---|++.++....-+.|. ..|. =|++..-.|.||+.|||-
T Consensus 37 p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~~~~~i~~g~v~~~~g~~ 82 (116)
T cd02786 37 PADAAARGIADGDLVVVFNDRGSVTLRAKVTDDVPPGVVVAEGGWW 82 (116)
T ss_pred HHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCCCCCCEEEeecccc
Confidence 345889999877766664 4442 257778889999999874
No 74
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=39.66 E-value=12 Score=26.98 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=11.3
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|||.||+|++
T Consensus 364 i~V~D~G~Gi~~~~ 377 (435)
T PRK09467 364 FQVEDDGPGIPPEQ 377 (435)
T ss_pred EEEEecCCCcCHHH
Confidence 55689999998854
No 75
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=39.42 E-value=33 Score=24.16 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCchhhhhhhhhhhhCCC-CcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVP-PQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~-~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|=..++..|++++++. ++.+.+|-|.=.||--++.||--+
T Consensus 157 ~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 157 GRPYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred CCCChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEE
Confidence 346678899999999995 688999988878888888888533
No 76
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=39.40 E-value=84 Score=19.38 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=36.6
Q ss_pred ecCCCCCceeEEeeCCCC--chhhhhhhhhhhhCC-CCcceeEEecCC
Q 034866 13 LTSDPKLPFKVFSVPEAA--PFTVVLKFAAEEFKV-PPQTSAIITNDG 57 (80)
Q Consensus 13 ltsdpklP~kvlsVPE~a--PFtAVlkfaAEeFkv-~~~TsAiITndG 57 (80)
=.-|+.-+-..+.|+..+ .|.++|....|..+. +-+--.|-|-||
T Consensus 7 rNGD~~~~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g 54 (80)
T cd01617 7 RNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDG 54 (80)
T ss_pred ECCCCCCCCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCC
Confidence 356777777788888875 699999999999998 555567779898
No 77
>PRK06769 hypothetical protein; Validated
Probab=39.30 E-value=11 Score=25.48 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=35.5
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
..-|-...++.++|+++++++.+..|-|.=.+|.-++.||--
T Consensus 91 ~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~ 132 (173)
T PRK06769 91 CRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNAT 132 (173)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCe
Confidence 357999999999999999999999998776778777777753
No 78
>PF08126 Propeptide_C25: Propeptide_C25; InterPro: IPR012600 This entry represents a propeptide domain found at the N-terminal end of some peptidases that belong to MEROPS peptidase family C25 (IPR001769 from INTERPRO). Little is known about its fuction.; GO: 0004197 cysteine-type endopeptidase activity
Probab=39.11 E-value=27 Score=25.52 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=26.4
Q ss_pred CCCCce--eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccc
Q 034866 16 DPKLPF--KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSA 66 (80)
Q Consensus 16 dpklP~--kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtA 66 (80)
.|.||+ +.|.||+.+. -.++|.-..+-++.+.++=+.|+|.-
T Consensus 59 ~P~LP~~~~~I~vP~~~~---------~~v~V~~~~~~~~~~~~i~~~P~~~~ 102 (202)
T PF08126_consen 59 EPELPVVSKSIAVPAGAN---------ASVSVEVVESKTIENYNILPAPSQPP 102 (202)
T ss_pred CCCCCEEEEEEEccCCCC---------cceEEEeeceeEEecCceeeCCCCCc
Confidence 577888 6777787442 23455444455667777777776654
No 79
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=37.58 E-value=17 Score=30.67 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.9
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
.+..|+|||.||+++.
T Consensus 53 ~~I~V~DNG~Gi~~~D 68 (638)
T COG0323 53 KLIRVRDNGSGIDKED 68 (638)
T ss_pred cEEEEEECCCCCCHHH
Confidence 3467899999999864
No 80
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=37.30 E-value=20 Score=31.22 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=15.3
Q ss_pred eeEEecCCcccCcccccce
Q 034866 50 SAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 50 sAiITndGiGINP~QtAG~ 68 (80)
...|.|||+||+++.--++
T Consensus 514 ~~~VeDnG~Gi~~~~e~~g 532 (574)
T COG3850 514 TLTVEDNGVGIDEAAEPSG 532 (574)
T ss_pred EEEEeeCCcCCCCccCCCC
Confidence 3678999999999876555
No 81
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=37.27 E-value=13 Score=26.96 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=11.4
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
.-|+|+|.||+|.+
T Consensus 536 i~v~D~G~G~~~~~ 549 (607)
T PRK11360 536 VSIEDNGCGIDPEL 549 (607)
T ss_pred EEEEeCCCCCCHHH
Confidence 44689999999874
No 82
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=36.87 E-value=61 Score=21.76 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=23.9
Q ss_pred EEEEecCCCCCceeEEeeCCCCchhhhhhhhhhh
Q 034866 9 FKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEE 42 (80)
Q Consensus 9 FKItltsdpklP~kvlsVPE~aPFtAVlkfaAEe 42 (80)
..|.+..|-.+ ++++|..++-..+.+|..+.
T Consensus 3 i~l~v~~dg~i---~V~aP~~~s~~~I~~fl~~~ 33 (205)
T PF01863_consen 3 IRLRVDPDGEI---VVSAPPRVSKEEIERFLRSK 33 (205)
T ss_pred EEEEEcCCCEE---EEEECCCCCHHHHHHHHHHH
Confidence 44555665554 89999999999999998754
No 83
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=36.50 E-value=18 Score=26.31 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=11.1
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||+|.+
T Consensus 387 i~V~D~G~Gi~~e~ 400 (466)
T PRK10549 387 LTFADSAPGVSDEQ 400 (466)
T ss_pred EEEEecCCCcCHHH
Confidence 34689999998864
No 84
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=36.42 E-value=29 Score=29.48 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEeeCCCCchhhhhh----hhhhhhCC
Q 034866 23 VFSVPEAAPFTVVLK----FAAEEFKV 45 (80)
Q Consensus 23 vlsVPE~aPFtAVlk----faAEeFkv 45 (80)
|||.|..+.=.||++ ||+|+|+=
T Consensus 86 VLSMPaGTd~eAVrdAARefA~E~Fgs 112 (446)
T PRK13863 86 IVSFPAGTSQVAAYAASREWAAEMFGS 112 (446)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 789999998888877 99999994
No 85
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=36.33 E-value=16 Score=26.15 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=11.0
Q ss_pred eeEEecCCcccCcc
Q 034866 50 SAIITNDGVGINPQ 63 (80)
Q Consensus 50 sAiITndGiGINP~ 63 (80)
...|+|||.||++.
T Consensus 402 ~i~i~D~G~Gi~~~ 415 (475)
T PRK11100 402 ALSVEDQGPGIPDY 415 (475)
T ss_pred EEEEEECCCCCCHH
Confidence 35678999999864
No 86
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=36.21 E-value=12 Score=27.10 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=33.1
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|=......++++++++|+.+..|.|.-.+|..++.||-
T Consensus 152 KP~p~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~ 190 (220)
T TIGR01691 152 KTEAQSYVKIAGQLGSPPREILFLSDIINELDAARKAGL 190 (220)
T ss_pred CCCHHHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCC
Confidence 455567788899999999999999998888888888884
No 87
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.97 E-value=18 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=12.9
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
+..|.|||.||++++
T Consensus 53 ~i~V~DnG~Gi~~~~ 67 (312)
T TIGR00585 53 LIEVSDNGSGIDKED 67 (312)
T ss_pred EEEEEecCCCCCHHH
Confidence 467899999999976
No 88
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=35.89 E-value=28 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=13.3
Q ss_pred eEEecCCcccCcccccc
Q 034866 51 AIITNDGVGINPQQSAG 67 (80)
Q Consensus 51 AiITndGiGINP~QtAG 67 (80)
..|.|+|.||+|...-|
T Consensus 506 i~V~D~G~Gi~~~~~~~ 522 (565)
T PRK10935 506 VSIRDDGIGIGELKEPE 522 (565)
T ss_pred EEEEECCcCcCCCCCCC
Confidence 56689999999976543
No 89
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=35.88 E-value=12 Score=24.99 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=30.5
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|-....+.++++++++|+.+..|=|.-.+|-.+..+|-
T Consensus 152 KP~p~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~ 190 (211)
T TIGR02247 152 KPDPRIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGI 190 (211)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCC
Confidence 477778899999999999999999555556666666664
No 90
>PRK09303 adaptive-response sensory kinase; Validated
Probab=35.82 E-value=15 Score=27.23 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=11.4
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||++.+
T Consensus 308 i~V~D~G~GI~~~~ 321 (380)
T PRK09303 308 VSICDTGPGIPEEE 321 (380)
T ss_pred EEEEEcCCCCCHHH
Confidence 45689999999865
No 91
>PRK01530 hypothetical protein; Reviewed
Probab=35.76 E-value=29 Score=23.62 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=25.2
Q ss_pred CceeEEeeCCCC-chhhhhhhhhhhhCCCCcceeEE
Q 034866 19 LPFKVFSVPEAA-PFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 19 lP~kvlsVPE~a-PFtAVlkfaAEeFkv~~~TsAiI 53 (80)
|=-+|=..|++- -=.|+++|-|++|+||....-|+
T Consensus 41 Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~Iv 76 (105)
T PRK01530 41 LKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEII 76 (105)
T ss_pred EEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEE
Confidence 334444555543 56899999999999998776665
No 92
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=35.38 E-value=41 Score=22.20 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=25.4
Q ss_pred EEeeCCCCchhhhhhhhhhhhCCCCcce
Q 034866 23 VFSVPEAAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 23 vlsVPE~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
.+.||..+|+..+..-.+|.++.+++..
T Consensus 10 ai~v~~g~~y~~L~~~ls~kL~l~~~~~ 37 (78)
T cd06411 10 ALRAPRGADVSSLRALLSQALPQQAQRG 37 (78)
T ss_pred EEEccCCCCHHHHHHHHHHHhcCChhhc
Confidence 4889999999999999999999998763
No 93
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=35.26 E-value=63 Score=22.06 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=30.5
Q ss_pred hhhhhhCCCCcceeEEecCC------cccCcccccceeeeeeeee
Q 034866 38 FAAEEFKVPPQTSAIITNDG------VGINPQQSAGILFIFLNFV 76 (80)
Q Consensus 38 faAEeFkv~~~TsAiITndG------iGINP~QtAG~VFlkhgf~ 76 (80)
=-|++.++..-+-+.|+|+. +=|.|..--|.|++-|||=
T Consensus 45 ~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~~i~pgvV~i~~G~G 89 (137)
T cd02784 45 RTAEALGLLQGDVVRIRRGGRTIELPVWIQPGHAEGVVLLALGYG 89 (137)
T ss_pred HHHHHcCCCCCCEEEEEeCCeEEEEEEEECCCcCCCEEEEecccC
Confidence 35889999888887787654 2367888889999999973
No 94
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=35.16 E-value=20 Score=21.39 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=12.0
Q ss_pred ceeEEecCCcccCcc
Q 034866 49 TSAIITNDGVGINPQ 63 (80)
Q Consensus 49 TsAiITndGiGINP~ 63 (80)
.+..|.|+|.||.++
T Consensus 38 ~~i~i~d~G~gi~~~ 52 (111)
T PF02518_consen 38 LSIEISDNGVGIPPE 52 (111)
T ss_dssp EEEEEEESSSSTTHH
T ss_pred EEEEEEecccccccc
Confidence 346679999999984
No 95
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=34.75 E-value=15 Score=24.80 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=37.4
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce--eeeeeee
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~--VFlkhgf 75 (80)
..-|-...++.++++++++++.+.+|=|+- ..|-.++.+|- |++..|+
T Consensus 89 ~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~ 139 (170)
T TIGR01668 89 AVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLV 139 (170)
T ss_pred CCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEccCc
Confidence 346888899999999999999999998886 47888877775 4444443
No 96
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=34.72 E-value=21 Score=26.26 Aligned_cols=16 Identities=25% Similarity=0.698 Sum_probs=13.2
Q ss_pred eEEecCCcccCccccc
Q 034866 51 AIITNDGVGINPQQSA 66 (80)
Q Consensus 51 AiITndGiGINP~QtA 66 (80)
.-|.|||.|.+|.+..
T Consensus 313 l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 313 LEVIDNGVGFDPDKEG 328 (365)
T ss_pred EEEEECCcCCCccccC
Confidence 3479999999999865
No 97
>PRK00647 hypothetical protein; Validated
Probab=34.58 E-value=33 Score=23.19 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=25.5
Q ss_pred CceeEEeeCCCC-chhhhhhhhhhhhCCCCcceeEE
Q 034866 19 LPFKVFSVPEAA-PFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 19 lP~kvlsVPE~a-PFtAVlkfaAEeFkv~~~TsAiI 53 (80)
+=-+|=..|++- -=.|+++|-|++|+||....-|+
T Consensus 29 Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~Iv 64 (96)
T PRK00647 29 LKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTLI 64 (96)
T ss_pred EEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEE
Confidence 334445556543 56799999999999998776666
No 98
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=34.56 E-value=17 Score=24.38 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=33.1
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
...-|-...+..|++.++++|..+..|-|.=.||--++.||
T Consensus 139 ~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG 179 (221)
T PRK10563 139 QRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAG 179 (221)
T ss_pred CCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCC
Confidence 44568899999999999999999999966656666666666
No 99
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=34.55 E-value=58 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=28.8
Q ss_pred hhhhhCCCCcceeEEecC-C-----cccCcccccceeeeeeeee
Q 034866 39 AAEEFKVPPQTSAIITND-G-----VGINPQQSAGILFIFLNFV 76 (80)
Q Consensus 39 aAEeFkv~~~TsAiITnd-G-----iGINP~QtAG~VFlkhgf~ 76 (80)
.|++.++.-.....|+++ | +=|++..-.|.||+-||+-
T Consensus 38 ~A~~~gi~~Gd~V~v~s~~g~i~~~a~~~~~v~~g~v~~~~g~~ 81 (121)
T cd02794 38 DAAARGIKDGDRVLVFNDRGKVIRPVKVTERIMPGVVALPQGAW 81 (121)
T ss_pred HHHHcCCCCCCEEEEEcCCceEEEEEEECCCccCCEEEecCccc
Confidence 488899988777777554 3 3367888889999999864
No 100
>PRK10604 sensor protein RstB; Provisional
Probab=34.42 E-value=20 Score=26.82 Aligned_cols=14 Identities=43% Similarity=0.909 Sum_probs=11.3
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|||.||++++
T Consensus 352 I~V~D~G~Gi~~e~ 365 (433)
T PRK10604 352 LIVEDDGPGIPPEE 365 (433)
T ss_pred EEEEEcCCCCCHHH
Confidence 45689999999864
No 101
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=34.19 E-value=22 Score=25.34 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=35.0
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccc--eeeeeeee
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAG--ILFIFLNF 75 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG--~VFlkhgf 75 (80)
-|-..+++.+++.++++++.+..|-|+- ..|...+.+| .+++..|+
T Consensus 178 KP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~ 226 (249)
T TIGR01457 178 KPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGV 226 (249)
T ss_pred CChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCC
Confidence 4666778888999999999999998775 6787777777 35555554
No 102
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=33.99 E-value=1.1e+02 Score=18.46 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=26.5
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEE
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
..++|+.++-...+=+-.++++++++..--+|
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~ 45 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPKERLALL 45 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCChHHEEEE
Confidence 34899999989888888899999988766665
No 103
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=33.99 E-value=37 Score=21.47 Aligned_cols=34 Identities=32% Similarity=0.354 Sum_probs=25.2
Q ss_pred EEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhC
Q 034866 9 FKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFK 44 (80)
Q Consensus 9 FKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFk 44 (80)
|+|++.+||..+|+=-| .++....|++=..+.-+
T Consensus 2 F~v~~~~~~~~~~~~~S--~~~~W~~vl~~v~~~r~ 35 (86)
T smart00542 2 FRVEIESDPDEVFKGES--PEKCWEMVLERVQEARI 35 (86)
T ss_pred eEEEEecCCCCeEEeCC--HHHHHHHHHHHHHHHHH
Confidence 89999999998776443 45568888877666543
No 104
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=33.86 E-value=15 Score=20.22 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=14.5
Q ss_pred CceeEEeeCCCCchhhh
Q 034866 19 LPFKVFSVPEAAPFTVV 35 (80)
Q Consensus 19 lP~kvlsVPE~aPFtAV 35 (80)
-||+||.|++++....+
T Consensus 2 ~~y~vLgl~~~~~~~~i 18 (60)
T smart00271 2 DYYEILGVPRDASLDEI 18 (60)
T ss_pred CHHHHcCCCCCCCHHHH
Confidence 47999999999888776
No 105
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=33.74 E-value=18 Score=26.00 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=11.0
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 386 i~V~D~G~Gi~~~~ 399 (461)
T PRK09470 386 ITVDDDGPGVPEEE 399 (461)
T ss_pred EEEEECCCCCCHHH
Confidence 35689999999864
No 106
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=33.18 E-value=23 Score=27.89 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=12.4
Q ss_pred eeEEecCCcccCcccc
Q 034866 50 SAIITNDGVGINPQQS 65 (80)
Q Consensus 50 sAiITndGiGINP~Qt 65 (80)
...|.|||.||+|++.
T Consensus 443 ~l~V~DnG~Gi~~~~~ 458 (495)
T PRK11644 443 MLVIEDDGSGLPPGSG 458 (495)
T ss_pred EEEEEECCCCCCcCCC
Confidence 3567899999998653
No 107
>PLN03219 uncharacterized protein; Provisional
Probab=33.05 E-value=36 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.4
Q ss_pred CchhhhhhhhhhhhCCCCc
Q 034866 30 APFTVVLKFAAEEFKVPPQ 48 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~ 48 (80)
--|.+.|+=|+|||+....
T Consensus 67 P~F~~LL~~AeEEfGf~~~ 85 (108)
T PLN03219 67 PLFREFLNRAEEECGFHHS 85 (108)
T ss_pred hHHHHHHHHHHHHhCCCCC
Confidence 3599999999999999754
No 108
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=32.87 E-value=72 Score=20.48 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=29.8
Q ss_pred hhhhhhhCCCCcceeEEecCC------cccCcccccceeeeeeee
Q 034866 37 KFAAEEFKVPPQTSAIITNDG------VGINPQQSAGILFIFLNF 75 (80)
Q Consensus 37 kfaAEeFkv~~~TsAiITndG------iGINP~QtAG~VFlkhgf 75 (80)
.=.|++.++...+.+.|+|+- +-|++..-.|.||+-||+
T Consensus 39 p~dA~~~gi~~Gd~V~v~s~~G~~~~~~~~~~~v~~g~v~~~~g~ 83 (129)
T cd02793 39 PADAAARGIADGDIVRVFNDRGACLAGAVVTDGIMPGVVQLPTGA 83 (129)
T ss_pred HHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCcCCCEEEEcccc
Confidence 345889999888887776654 126788888999999985
No 109
>PLN02872 triacylglycerol lipase
Probab=32.59 E-value=65 Score=25.28 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=35.3
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccC----c-c------cccceeeeeeeee
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGIN----P-Q------QSAGILFIFLNFV 76 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGIN----P-~------QtAG~VFlkhgf~ 76 (80)
...|+...+-=-.+..++|.++--+.|.||.-+. | . +....|+|-||+.
T Consensus 25 ~~~~~~t~~~~~i~~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~ 84 (395)
T PLN02872 25 RRSPVESLCAQLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLF 84 (395)
T ss_pred cCCCchhhHHHHHHHcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCccc
Confidence 3457777766666778999999889999998765 2 1 1123699999974
No 110
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=32.18 E-value=29 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=27.1
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCccc-Ccccccc
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGI-NPQQSAG 67 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGI-NP~QtAG 67 (80)
-|-.+.-++|+++++++|+.+..|-|+-.=+ -+++.+|
T Consensus 154 KP~~~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G 192 (229)
T COG1011 154 KPDPEIFEYALEKLGVPPEEALFVGDSLENDILGARALG 192 (229)
T ss_pred CCCcHHHHHHHHHcCCCcceEEEECCChhhhhHHHHhcC
Confidence 4777888999999999999888885543322 3444444
No 111
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=32.16 E-value=87 Score=16.73 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=31.4
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccc
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~Qt 65 (80)
..+.|++......+-+-.++++++|+..-.++-+ |-=++..+|
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~-g~~L~d~~t 54 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK-GKVLEDDRT 54 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC-CEECCCCCC
Confidence 3467899999999999999999999876555544 443444443
No 112
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=31.96 E-value=18 Score=24.08 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=34.6
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|-...++.+++++++++..+..|=|.=.+|..++.+|--+
T Consensus 130 ~KP~~~~~~~~~~~~~~~~~~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 130 PKPAPDIVREALRLLDVPPEDAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred CCCChHHHHHHHHHcCCChhheEEEcCCHHHHHHHHHcCCeE
Confidence 357778999999999999999888877767888888888644
No 113
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=31.86 E-value=46 Score=20.12 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=34.3
Q ss_pred EEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcc------eeEEecCCcccCccccc
Q 034866 10 KVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQT------SAIITNDGVGINPQQSA 66 (80)
Q Consensus 10 KItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~T------sAiITndGiGINP~QtA 66 (80)
+||+.-+...-+. +.+|.+.|+..++.=..+.++.+... -.+.+++|.-++|.+|-
T Consensus 4 rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL 65 (79)
T PF08817_consen 4 RVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTL 65 (79)
T ss_dssp EEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBC
T ss_pred EEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcH
Confidence 3444443323333 67999999999999999988874322 13335999999998874
No 114
>PRK15328 invasion protein IagB; Provisional
Probab=31.83 E-value=7.6 Score=27.61 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.3
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
+.+..+|+++..-||++++|+|..-
T Consensus 12 ~~~~~a~~~c~~~aa~~y~Idp~Ll 36 (160)
T PRK15328 12 LSINTAWADCWLQAEKMFNIESELL 36 (160)
T ss_pred HcCchHHHHHHHHHHHHcCCCHHHH
Confidence 3466789999999999999998765
No 115
>PRK10364 sensor protein ZraS; Provisional
Probab=31.75 E-value=19 Score=26.72 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.6
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|||.||+|++
T Consensus 383 i~V~D~G~Gi~~~~ 396 (457)
T PRK10364 383 ISVTDSGKGIAADQ 396 (457)
T ss_pred EEEEECCCCCCHHH
Confidence 55699999999864
No 116
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=31.69 E-value=17 Score=19.53 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.6
Q ss_pred ceeEEeeCCCCchhhh
Q 034866 20 PFKVFSVPEAAPFTVV 35 (80)
Q Consensus 20 P~kvlsVPE~aPFtAV 35 (80)
||+||.|++.+....+
T Consensus 2 ~y~vLgl~~~~~~~~i 17 (55)
T cd06257 2 YYDILGVPPDASDEEI 17 (55)
T ss_pred hHHHcCCCCCCCHHHH
Confidence 7899999999888765
No 117
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=31.02 E-value=86 Score=21.39 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcc
Q 034866 17 PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 17 pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~T 49 (80)
|.-|||.|.|-.++-=..|++-|-|.|++..+.
T Consensus 13 ~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~ 45 (100)
T cd01781 13 PTRPYKTILLSINDNADRIVGEALEKYGLEKSD 45 (100)
T ss_pred CCCCeEEEEecCCccHHHHHHHHHHHhCCCccC
Confidence 889999999999999999999999999996653
No 118
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=30.65 E-value=40 Score=21.74 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
.-|=...+..+++++++++..+..|=|.=.||--++.||--++
T Consensus 141 ~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~~i 183 (188)
T PRK10725 141 HKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMDAV 183 (188)
T ss_pred CCCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCEEE
Confidence 3466778899999999999888888666677777777776544
No 119
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=30.43 E-value=31 Score=25.25 Aligned_cols=45 Identities=24% Similarity=0.503 Sum_probs=37.7
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
...-|=...+..++++++++|+.+.+|=|.=.||.-++.||--++
T Consensus 199 ~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 199 PKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred CCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEE
Confidence 445688889999999999999999999888789999999985443
No 120
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=30.39 E-value=19 Score=25.46 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=10.8
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
-.|.|+|+||.+.+
T Consensus 426 ~~V~D~G~Gi~~~~ 439 (494)
T TIGR02938 426 VSILDSGPGIPQDL 439 (494)
T ss_pred EEEEeCCCCCCHHH
Confidence 34589999998754
No 121
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=30.15 E-value=1.4e+02 Score=19.74 Aligned_cols=45 Identities=13% Similarity=0.350 Sum_probs=32.3
Q ss_pred CCCceeEEeeCCC-------CchhhhhhhhhhhhCCCCcce-eEEecCCcccC
Q 034866 17 PKLPFKVFSVPEA-------APFTVVLKFAAEEFKVPPQTS-AIITNDGVGIN 61 (80)
Q Consensus 17 pklP~kvlsVPE~-------aPFtAVlkfaAEeFkv~~~Ts-AiITndGiGIN 61 (80)
|..||||-+.-.+ .-..-++.=+++-|+++...+ .+.=.||..|+
T Consensus 1 ~~kpfkV~~~~r~~k~GV~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd 53 (78)
T cd06539 1 PARPFRVSNHDRSSRRGVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVD 53 (78)
T ss_pred CCCcEEEecCCCCceEEEEecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEc
Confidence 4567887766553 235567888999999976544 55689999985
No 122
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.85 E-value=1e+02 Score=19.31 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=26.7
Q ss_pred hhhhhCCCCcceeEEecCC-c-----ccCcccccceeeeeeee
Q 034866 39 AAEEFKVPPQTSAIITNDG-V-----GINPQQSAGILFIFLNF 75 (80)
Q Consensus 39 aAEeFkv~~~TsAiITndG-i-----GINP~QtAG~VFlkhgf 75 (80)
.|++.++..-.-+.|+|+. . =|++..-.|.||+-|||
T Consensus 41 dA~~~gi~~Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~~~g~ 83 (130)
T cd02781 41 TAAKLGIADGDWVWVETPRGRARQKARLTPGIRPGVVRAEHGW 83 (130)
T ss_pred HHHHcCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEEeccc
Confidence 4788888877666665543 2 14677778999999986
No 123
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=29.80 E-value=37 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=24.0
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCccc
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGI 60 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGI 60 (80)
-|=...+..++++.++++..+.+|-|.-.+|
T Consensus 161 KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di 191 (197)
T TIGR01548 161 KPNPEPLILAAKALGVEACHAAMVGDTVDDI 191 (197)
T ss_pred CcCHHHHHHHHHHhCcCcccEEEEeCCHHHH
Confidence 4666778899999999999888886554444
No 124
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=29.74 E-value=21 Score=25.46 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=11.1
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||+|.+
T Consensus 388 i~v~D~G~g~~~~~ 401 (457)
T TIGR01386 388 VSVSNPGPGIPPEH 401 (457)
T ss_pred EEEEeCCCCCCHHH
Confidence 44589999998864
No 125
>PLN03220 uncharacterized protein; Provisional
Probab=29.52 E-value=41 Score=23.44 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.4
Q ss_pred CchhhhhhhhhhhhCCCCc
Q 034866 30 APFTVVLKFAAEEFKVPPQ 48 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~ 48 (80)
--|.+.|+=|+|||+.+..
T Consensus 65 P~F~~LL~~AeEEfGf~~~ 83 (105)
T PLN03220 65 PSFKEFLSRAEEEFGFNHP 83 (105)
T ss_pred hHHHHHHHHHHHHhCCCCC
Confidence 3599999999999999754
No 126
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=29.35 E-value=84 Score=20.76 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcc
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQ 63 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~ 63 (80)
.|=|..|.+|+.|.- -.+....++|| |.|--|.
T Consensus 66 GTdf~pvf~~~~~~~-~~~~~vi~fTD-g~~~~~~ 98 (126)
T PF09967_consen 66 GTDFRPVFEYLEENR-PRPSVVIYFTD-GEGWPPE 98 (126)
T ss_pred CCcchHHHHHHHhcC-CCCCEEEEEeC-CCCCCCC
Confidence 577999999998863 22222234677 9995444
No 127
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=29.27 E-value=23 Score=26.11 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=11.1
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 352 i~V~D~G~Gi~~~~ 365 (430)
T PRK11006 352 FSVEDNGPGIAPEH 365 (430)
T ss_pred EEEEEcCCCCCHHH
Confidence 45689999998754
No 128
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=28.93 E-value=86 Score=19.30 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.0
Q ss_pred hhhhhhCCCCcceeEEecCCc------ccCcccccceeeeeee
Q 034866 38 FAAEEFKVPPQTSAIITNDGV------GINPQQSAGILFIFLN 74 (80)
Q Consensus 38 faAEeFkv~~~TsAiITndGi------GINP~QtAG~VFlkhg 74 (80)
--|+++++.....+.|++++- =|++..-.|.||+-+|
T Consensus 36 ~dA~~lGi~~Gd~V~v~s~~G~i~~~v~v~~~v~~g~V~~p~g 78 (96)
T cd02788 36 ADAARLGLADGDLVEFSLGDGTLTLPVQISKYLPAGVVGLPLG 78 (96)
T ss_pred HHHHHcCCCCCCEEEEEECCeEEEEEEEECCCCCCCEEEEecC
Confidence 358999999888877776652 2568888899999886
No 129
>PRK10337 sensor protein QseC; Provisional
Probab=28.37 E-value=24 Score=25.64 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=11.2
Q ss_pred eeEEecCCcccCcc
Q 034866 50 SAIITNDGVGINPQ 63 (80)
Q Consensus 50 sAiITndGiGINP~ 63 (80)
...|.|+|.||.|.
T Consensus 382 ~i~i~D~G~Gi~~~ 395 (449)
T PRK10337 382 NFTVRDNGPGVTPE 395 (449)
T ss_pred EEEEEECCCCCCHH
Confidence 36679999999765
No 130
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=27.55 E-value=1.9e+02 Score=19.16 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=33.2
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCC
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVP 46 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~ 46 (80)
.|+..|+....| -+++.||.+..|.....=..+.||+.
T Consensus 1 ~~ikVKv~~~~D----v~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 1 RKIRVKVHAQDD----TRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred CcEEEEEEecCc----EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 367888888888 58999999999999999999999985
No 131
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=27.47 E-value=77 Score=18.88 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=20.3
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecC
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITND 56 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITnd 56 (80)
++..|+++++...+++.-.++ ...++.|+|+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~----~~~~i~V~d~ 32 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKN----NISGLPVVDE 32 (126)
T ss_pred CeEEECCCccHHHHHHHHHHh----CCCcccEECC
Confidence 467789999998888765442 2334555654
No 132
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=27.35 E-value=1.2e+02 Score=16.89 Aligned_cols=22 Identities=5% Similarity=-0.087 Sum_probs=17.6
Q ss_pred CchhhhhhhhhhhhCCCCccee
Q 034866 30 APFTVVLKFAAEEFKVPPQTSA 51 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsA 51 (80)
.|+...+++++++.+++.+.-.
T Consensus 9 ~~~~~~v~~~l~~~gi~~e~~~ 30 (72)
T cd03039 9 RGRGEPIRLLLADAGVEYEDVR 30 (72)
T ss_pred cchHHHHHHHHHHCCCCcEEEE
Confidence 3788889999999999876643
No 133
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=26.80 E-value=1.1e+02 Score=16.49 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=30.1
Q ss_pred EeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccc
Q 034866 24 FSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65 (80)
Q Consensus 24 lsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~Qt 65 (80)
+.++++++...+-+--++++++++..-.++- +|-=++...+
T Consensus 12 ~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~-~g~~l~d~~~ 52 (69)
T cd01769 12 LEVSPDDTVAELKAKIAAKEGVPPEQQRLIY-AGKILKDDKT 52 (69)
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEE-CCcCCCCcCC
Confidence 4688899999999999999999887766643 4444444443
No 134
>PRK01310 hypothetical protein; Validated
Probab=26.79 E-value=58 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=23.3
Q ss_pred EEeeCCC-CchhhhhhhhhhhhCCCCcceeEE
Q 034866 23 VFSVPEA-APFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 23 vlsVPE~-aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
|=..|++ .-=.|+++|-|+.|+||....-|+
T Consensus 44 v~apPv~GkAN~ali~~LA~~l~v~ks~I~iv 75 (104)
T PRK01310 44 VRAVPEGGEANRALIELLAKALGVPKSSVRLL 75 (104)
T ss_pred EecCCCCChHHHHHHHHHHHHhCCChhhEEEE
Confidence 3344543 356799999999999998877776
No 135
>PRK10815 sensor protein PhoQ; Provisional
Probab=26.70 E-value=27 Score=27.22 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=11.3
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||.|.+
T Consensus 411 I~V~D~G~GI~~e~ 424 (485)
T PRK10815 411 IVVEDDGPGIPESK 424 (485)
T ss_pred EEEEECCCCcCHHH
Confidence 45799999999854
No 136
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.40 E-value=86 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=28.2
Q ss_pred ceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCC
Q 034866 20 PFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDG 57 (80)
Q Consensus 20 P~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndG 57 (80)
|-+++.+|.+ .....+.|+|+|++++. .|+|+|+-
T Consensus 763 ~g~~~~~~~~--~~e~~~~~~~~~~~~~~-~~~~~~~~ 797 (823)
T PLN03192 763 AGKLINLPPS--LEELKAIAGEKLGFDAR-KAMVTNEE 797 (823)
T ss_pred cCeEEeCCcc--HHHHHHHHHHHhCCCcc-cceeecCC
Confidence 6778888877 67788899999999977 68887653
No 137
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=25.92 E-value=60 Score=23.99 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.3
Q ss_pred ceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCC
Q 034866 20 PFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDG 57 (80)
Q Consensus 20 P~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndG 57 (80)
=|.|..|||++|=-+--|=.++-..+..+.+-=+-.||
T Consensus 97 ~w~Va~i~EN~PA~~fwK~~~~t~~i~~E~r~d~~~d~ 134 (143)
T COG5628 97 VWQVATVRENTPARAFWKRVAETYPVVEEDRQDARWDG 134 (143)
T ss_pred eEEEEEeccCChhHHHHHhhhcccccchhhhhcccCCC
Confidence 37899999999999999999998888877774444444
No 138
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=25.89 E-value=64 Score=20.91 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=18.5
Q ss_pred eeEEeeCCCCchhhhhhhhhhh
Q 034866 21 FKVFSVPEAAPFTVVLKFAAEE 42 (80)
Q Consensus 21 ~kvlsVPE~aPFtAVlkfaAEe 42 (80)
|-++.+|.+.||..+++-..++
T Consensus 100 lPli~ip~~~~f~~I~~~v~~~ 121 (123)
T PF07905_consen 100 LPLIEIPWEVPFSDITREVMRA 121 (123)
T ss_pred CCEEEeCCCCCHHHHHHHHHHH
Confidence 5589999999999999877654
No 139
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=25.84 E-value=31 Score=24.81 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=31.0
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccc
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAG 67 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG 67 (80)
-|...+++.|+++++++++.+.+|-|+- ..|...+.+|
T Consensus 179 KP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G 217 (257)
T TIGR01458 179 KPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCG 217 (257)
T ss_pred CCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHHHcC
Confidence 5777889999999999999999997774 5676666666
No 140
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=25.50 E-value=1.4e+02 Score=16.98 Aligned_cols=32 Identities=6% Similarity=0.133 Sum_probs=21.2
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCC
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDG 57 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndG 57 (80)
.++.++++++...+++.. .+.+. .+..|+|+.
T Consensus 2 ~~~~i~~~~~i~~a~~~~-~~~~~---~~~~v~~~~ 33 (111)
T cd04590 2 DIVALDADDTLEEILELI-AESGH---SRFPVYDGD 33 (111)
T ss_pred ceEEEcCCCCHHHHHHHH-hhCCC---ceEEEECCC
Confidence 467889999888888765 34443 345666653
No 141
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=25.48 E-value=43 Score=22.08 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=22.5
Q ss_pred chhhhhhhhhhhhCCCCcceeEEecCC
Q 034866 31 PFTVVLKFAAEEFKVPPQTSAIITNDG 57 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~~~TsAiITndG 57 (80)
=+|.-|+-|++.++++-.+.-||++++
T Consensus 87 ~~T~~L~~~~~~l~I~llDHiIv~~~~ 113 (123)
T PF04002_consen 87 ALTRRLKKAARLLGIELLDHIIVGDGG 113 (123)
T ss_dssp HHHHHHHHHHHHHT-EEEEEEEEESSE
T ss_pred HHHHHHHHHHHHcCCeeeeEEEEeCCc
Confidence 478889999999999999999998654
No 142
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=25.29 E-value=39 Score=18.34 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=12.0
Q ss_pred eeEEecCCcccCcccc
Q 034866 50 SAIITNDGVGINPQQS 65 (80)
Q Consensus 50 sAiITndGiGINP~Qt 65 (80)
...|+|+|.|+++.+.
T Consensus 39 ~i~i~d~g~g~~~~~~ 54 (111)
T smart00387 39 EITVEDNGPGIPPEDL 54 (111)
T ss_pred EEEEEeCCCCCCHHHH
Confidence 4567999999987443
No 143
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=25.24 E-value=41 Score=22.49 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=11.3
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.|++|.+
T Consensus 80 i~V~D~G~g~d~~~ 93 (161)
T PRK04069 80 IVVADNGVSFDYET 93 (161)
T ss_pred EEEEECCcCCChHH
Confidence 56799999999753
No 144
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=25.20 E-value=2.8e+02 Score=20.37 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=35.4
Q ss_pred CceeEEeeCCCCchhhhhhhhhhhhCCCCcce-eEEecCCcccCc
Q 034866 19 LPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTS-AIITNDGVGINP 62 (80)
Q Consensus 19 lP~kvlsVPE~aPFtAVlkfaAEeFkv~~~Ts-AiITndGiGINP 62 (80)
-|.-.+++|..++.+.+.+-..+...++.... .+.|+.|-.+.+
T Consensus 14 p~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~ 58 (162)
T PF13019_consen 14 PPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSP 58 (162)
T ss_pred CCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCC
Confidence 37788999999999999999999999988774 455666656544
No 145
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=25.00 E-value=75 Score=18.13 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.6
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcce
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
++.+.|.+ |++..++.++++.+++-..-
T Consensus 2 ~Ly~~~~~-~~~~~~~~~l~~~gi~~~~~ 29 (75)
T cd03044 2 TLYTYPGN-PRSLKILAAAKYNGLDVEIV 29 (75)
T ss_pred eEecCCCC-ccHHHHHHHHHHcCCceEEE
Confidence 45555554 78888899999999886553
No 146
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.90 E-value=34 Score=18.17 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=10.5
Q ss_pred hhhhhhhCCCCcce
Q 034866 37 KFAAEEFKVPPQTS 50 (80)
Q Consensus 37 kfaAEeFkv~~~Ts 50 (80)
+-+|++|+|++.|.
T Consensus 16 ~~~a~~~gis~~tv 29 (52)
T PF13518_consen 16 REIAREFGISRSTV 29 (52)
T ss_pred HHHHHHHCCCHhHH
Confidence 45789999977653
No 147
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.68 E-value=37 Score=29.46 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.0
Q ss_pred eeEEecCCcccCcc
Q 034866 50 SAIITNDGVGINPQ 63 (80)
Q Consensus 50 sAiITndGiGINP~ 63 (80)
..-|.|||-|||+.
T Consensus 478 vIev~DDG~Gid~e 491 (716)
T COG0643 478 VIEVSDDGAGIDRE 491 (716)
T ss_pred EEEEeeCCCCCCHH
Confidence 34458999999985
No 148
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=24.67 E-value=1.1e+02 Score=17.89 Aligned_cols=24 Identities=4% Similarity=-0.027 Sum_probs=18.3
Q ss_pred CCchhhhhhhhhhhhCCCCcceeE
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAI 52 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAi 52 (80)
..|++.-++.+++|.+++-+.-.+
T Consensus 8 ~s~~s~rv~~~L~e~gl~~e~~~v 31 (73)
T cd03052 8 QSFSSQKVRLVIAEKGLRCEEYDV 31 (73)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEe
Confidence 457888888999999998766544
No 149
>PLN02940 riboflavin kinase
Probab=24.47 E-value=35 Score=26.36 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=34.7
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|=...+..|+++++++++.+.+|=|.-.+|--+..||--+
T Consensus 149 ~KP~p~~~~~a~~~lgv~p~~~l~VGDs~~Di~aA~~aGi~~ 190 (382)
T PLN02940 149 GKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGKAAGMEV 190 (382)
T ss_pred CCCCHHHHHHHHHHcCCChhHEEEEeCCHHHHHHHHHcCCEE
Confidence 456778899999999999999999977777888888888543
No 150
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=24.43 E-value=30 Score=27.79 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=11.5
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|+||.|.+
T Consensus 547 i~V~D~G~Gi~~~~ 560 (921)
T PRK15347 547 FTVEDTGCGIDIQQ 560 (921)
T ss_pred EEEEEcCCCCCHHH
Confidence 45789999999865
No 151
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=24.36 E-value=1.2e+02 Score=24.41 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=11.2
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|+||.|.+
T Consensus 447 i~V~D~G~Gi~~~~ 460 (919)
T PRK11107 447 VQIRDTGIGISERQ 460 (919)
T ss_pred EEEEEeCCCcCHHH
Confidence 45799999998754
No 152
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=24.32 E-value=91 Score=21.31 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcc
Q 034866 17 PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 17 pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~T 49 (80)
.+.|.|||-=+...|=++-|..-|||=+||-+.
T Consensus 53 RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~ 85 (100)
T PF15608_consen 53 RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVEV 85 (100)
T ss_pred hcCCCEEEECCCCCccHHHHHHHHHHcCCcEEE
Confidence 367999999888999999999999999998653
No 153
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=24.27 E-value=1e+02 Score=19.50 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=27.8
Q ss_pred hhhhhCCCCcceeEEecCCcc------cCcccccceeeeeeee
Q 034866 39 AAEEFKVPPQTSAIITNDGVG------INPQQSAGILFIFLNF 75 (80)
Q Consensus 39 aAEeFkv~~~TsAiITndGiG------INP~QtAG~VFlkhgf 75 (80)
-|++.++....-+.|+++.=- |++..--|.||+-||+
T Consensus 42 dA~~lgi~~Gd~V~v~s~~g~i~~~v~i~~~v~~g~v~~~~g~ 84 (127)
T cd02777 42 DAAARGIKDGDIVRVFNDRGAVLAGARVTDRIMPGVVALPEGA 84 (127)
T ss_pred HHHHcCCCCCCEEEEEcCCeEEEEEEEECCCcCCCEEEeCccc
Confidence 478999988888877765422 4567777999998886
No 154
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=24.14 E-value=95 Score=17.91 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=18.8
Q ss_pred EEeeCCCCchhhhhhhhhhhhCCCCcceeEEecC
Q 034866 23 VFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITND 56 (80)
Q Consensus 23 vlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITnd 56 (80)
+..++++++...+++.-.++- +...++|+|+
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~V~d~ 33 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGS---NQRRFVVVDN 33 (114)
T ss_pred cceeCCCCCHHHHHHHHhccC---CceeEEEEcC
Confidence 456788888887776543321 2345666654
No 155
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.97 E-value=1.5e+02 Score=17.94 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=27.9
Q ss_pred hhhhhCCCCcceeEEecCC------cccCcccccceeeeeeee
Q 034866 39 AAEEFKVPPQTSAIITNDG------VGINPQQSAGILFIFLNF 75 (80)
Q Consensus 39 aAEeFkv~~~TsAiITndG------iGINP~QtAG~VFlkhgf 75 (80)
-|++.++..-..+.|+|+. +=|++..-.|.||+-+||
T Consensus 43 dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~~~~ 85 (120)
T cd00508 43 DAARLGIKDGDLVRVSSRRGSVVVRARVTDRVRPGTVFMPFHW 85 (120)
T ss_pred HHHHcCCCCCCEEEEEeCCEEEEEEEEECCCcCCCEEEEeccc
Confidence 4788999887777776643 246777788999998887
No 156
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=23.91 E-value=72 Score=21.09 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.5
Q ss_pred CCchhhhhhhhhhhhCCCCcc
Q 034866 29 AAPFTVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~T 49 (80)
..-|.+.|+=|+|||+....-
T Consensus 61 hp~f~~LL~~aeeEfG~~~~G 81 (100)
T PF02519_consen 61 HPLFQELLEQAEEEFGFDQDG 81 (100)
T ss_pred chhHHHHHHHHhhhcCcCCCC
Confidence 346999999999999998743
No 157
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=23.73 E-value=41 Score=25.05 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=27.8
Q ss_pred hhhhhhhhCCCCcceeEEecCCcccC-c-ccccce-eeeeeee
Q 034866 36 LKFAAEEFKVPPQTSAIITNDGVGIN-P-QQSAGI-LFIFLNF 75 (80)
Q Consensus 36 lkfaAEeFkv~~~TsAiITndGiGIN-P-~QtAG~-VFlkhgf 75 (80)
.+|++ --+.+|...+-|+-+|..|| | -|+.-| -||+|+|
T Consensus 57 ~~~~~-L~~~N~D~vgWi~ipgT~IdyPVvq~~dn~~YL~~~f 98 (232)
T TIGR03064 57 KQFED-LLAINSDIVGWITVPGTHIDYPVVQGKDNDYYLNKNY 98 (232)
T ss_pred cCHHH-HHhhCCCEEEEEEECCcccccCeeeCCCchHHHhCcC
Confidence 34543 34579999999999999998 4 354444 4588877
No 158
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=23.55 E-value=33 Score=27.66 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.6
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|||.||+|+.
T Consensus 614 i~V~D~G~Gi~~~~ 627 (679)
T TIGR02916 614 IEIEDSGCGMSPAF 627 (679)
T ss_pred EEEEEcCCCcChHH
Confidence 44699999999975
No 159
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=23.50 E-value=32 Score=22.84 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=12.0
Q ss_pred hhhhhhhhCCCCcce
Q 034866 36 LKFAAEEFKVPPQTS 50 (80)
Q Consensus 36 lkfaAEeFkv~~~Ts 50 (80)
++=||++|+|++.|.
T Consensus 28 ~a~aA~~~gVS~~Ta 42 (85)
T PF13011_consen 28 VAHAAAEFGVSRRTA 42 (85)
T ss_pred HHHHHHHhCCCHHHH
Confidence 456899999998773
No 160
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=23.43 E-value=19 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=13.2
Q ss_pred ceeEEeeCCCCchhhhh
Q 034866 20 PFKVFSVPEAAPFTVVL 36 (80)
Q Consensus 20 P~kvlsVPE~aPFtAVl 36 (80)
||+||.|++.+....+-
T Consensus 2 ~y~iLgl~~~~~~~eik 18 (64)
T PF00226_consen 2 PYEILGLPPDASDEEIK 18 (64)
T ss_dssp HHHHCTSTTTSSHHHHH
T ss_pred hHHHCCCCCCCCHHHHH
Confidence 68889999988876653
No 161
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=23.25 E-value=1.9e+02 Score=17.63 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=32.4
Q ss_pred EEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEe
Q 034866 10 KVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIIT 54 (80)
Q Consensus 10 KItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiIT 54 (80)
+|++.+=...++.+ .|++++....+-+-.++++++|+..--+|-
T Consensus 3 ~i~vkt~~Gk~~~~-~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~ 46 (73)
T cd01791 3 EVVCNDRLGKKVRV-KCNPDDTIGDLKKLIAAQTGTRPEKIVLKK 46 (73)
T ss_pred EEEEECCCCCEEEE-EeCCCCcHHHHHHHHHHHhCCChHHEEEEe
Confidence 34443323345544 889999999999999999999998887774
No 162
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=23.17 E-value=1.6e+02 Score=16.89 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.5
Q ss_pred EEEEEecCCCCCceeEEeeC-CCCchhhhhhhhhhhhCCCC
Q 034866 8 SFKVTLTSDPKLPFKVFSVP-EAAPFTVVLKFAAEEFKVPP 47 (80)
Q Consensus 8 tFKItltsdpklP~kvlsVP-E~aPFtAVlkfaAEeFkv~~ 47 (80)
.+|+.+..| -+.+.+| .+.-|..+..-.++.|+.+.
T Consensus 2 ~vK~~~~~~----~~~~~~~~~~~s~~~L~~~i~~~~~~~~ 38 (81)
T cd05992 2 RVKVKYGGE----IRRFVVVSRSISFEDLRSKIAEKFGLDA 38 (81)
T ss_pred cEEEEecCC----CEEEEEecCCCCHHHHHHHHHHHhCCCC
Confidence 467777765 4677888 89999999999999999975
No 163
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=23.03 E-value=68 Score=23.83 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=23.2
Q ss_pred hhhhhhCCCCcceeEEecCCcccCcc
Q 034866 38 FAAEEFKVPPQTSAIITNDGVGINPQ 63 (80)
Q Consensus 38 faAEeFkv~~~TsAiITndGiGINP~ 63 (80)
-+|.|+++|-..-++|||-..||..+
T Consensus 190 ~~A~~~gi~~~~i~~Vtn~a~g~~~~ 215 (245)
T PRK09136 190 ALARELGLPYACLALVANWAAGRGDS 215 (245)
T ss_pred HHHHHcCCCEEEEEEEeecccCcCCC
Confidence 57899999999999999999999754
No 164
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.97 E-value=75 Score=24.28 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEeeCCCCc---hhhhhhhhhhhhC
Q 034866 22 KVFSVPEAAP---FTVVLKFAAEEFK 44 (80)
Q Consensus 22 kvlsVPE~aP---FtAVlkfaAEeFk 44 (80)
.++++|---| |-+|+||.|++..
T Consensus 128 ~Il~lPGY~ppe~Fl~vlkYVa~g~y 153 (182)
T COG2143 128 TILELPGYMPPEQFLAVLKYVADGKY 153 (182)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 5778887665 9999999999854
No 165
>PRK09835 sensor kinase CusS; Provisional
Probab=22.78 E-value=39 Score=24.57 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=11.6
Q ss_pred eEEecCCcccCcccc
Q 034866 51 AIITNDGVGINPQQS 65 (80)
Q Consensus 51 AiITndGiGINP~Qt 65 (80)
..|+|+|.||.|.+.
T Consensus 410 i~v~d~G~gi~~~~~ 424 (482)
T PRK09835 410 LVVENPGTPIAPEHL 424 (482)
T ss_pred EEEEECCCCcCHHHH
Confidence 456899999987643
No 166
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=22.77 E-value=92 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=23.3
Q ss_pred hhhhhhhhhhhhCCCCcceeEEecCCcccCcc
Q 034866 32 FTVVLKFAAEEFKVPPQTSAIITNDGVGINPQ 63 (80)
Q Consensus 32 FtAVlkfaAEeFkv~~~TsAiITndGiGINP~ 63 (80)
+..+|++..++++.| .+||.+|+|...+
T Consensus 356 l~~~l~~~~~~Y~~P----i~ItENG~~~~d~ 383 (478)
T PRK09593 356 LRITLNTIWDRYQKP----MFIVENGLGAVDK 383 (478)
T ss_pred HHHHHHHHHHHcCCC----EEEEcCCCCCCCC
Confidence 467899999999974 7899999997543
No 167
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=22.42 E-value=91 Score=26.39 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=36.1
Q ss_pred EEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecC--CcccCccccc
Q 034866 11 VTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITND--GVGINPQQSA 66 (80)
Q Consensus 11 ItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITnd--GiGINP~QtA 66 (80)
+++.-++++=|+. +....|++|=+|++.+||+|+-..=-|+ |-+|=|-+.|
T Consensus 342 ~vik~~an~ry~t-----d~~~~a~~~~l~~~~~Vp~Q~f~~~~d~~~Gstigpi~aa 394 (437)
T COG1362 342 PVIKVNANQRYAT-----DSEGIALLRKLAQKAGVPWQVFVLRNDVPCGSTIGPILAA 394 (437)
T ss_pred ceEEecCCCCccc-----CchHHHHHHHHHHHcCCceEEEEecccCCCCcccchhHHh
Confidence 3444566666666 7789999999999999999984433222 6667775544
No 168
>PRK10670 hypothetical protein; Provisional
Probab=22.21 E-value=92 Score=21.38 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=22.3
Q ss_pred CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcc
Q 034866 17 PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 17 pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~T 49 (80)
.+.||++..+.-+...+....=+|+.+++++..
T Consensus 11 ~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~ 43 (159)
T PRK10670 11 NKISFTLHTYEHDPAETNFGDEVVRKLGLNADQ 43 (159)
T ss_pred CCCCeEEEeeccCCcccchHHHHHHHhCCCHHH
Confidence 368999966555544444345678899998865
No 169
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=22.11 E-value=48 Score=23.13 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=11.2
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||.|..
T Consensus 283 i~v~D~G~Gi~~~~ 296 (348)
T PRK11073 283 IDIEDNGPGIPPHL 296 (348)
T ss_pred EEEEeCCCCCCHHH
Confidence 45799999998754
No 170
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.07 E-value=1.2e+02 Score=24.56 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.4
Q ss_pred hhhhhhhhhhhhCC-CCcceeEEecCCcccCc
Q 034866 32 FTVVLKFAAEEFKV-PPQTSAIITNDGVGINP 62 (80)
Q Consensus 32 FtAVlkfaAEeFkv-~~~TsAiITndGiGINP 62 (80)
+..+|++..++++. || .+||.+|+|...
T Consensus 353 l~~~L~~~~~~Y~~~pp---i~ItENG~~~~d 381 (467)
T TIGR01233 353 LYDQIMRVKNDYPNYKK---IYITENGLGYKD 381 (467)
T ss_pred HHHHHHHHHHHcCCCCC---EEEeCCCCCCCC
Confidence 46889999999987 53 789999999754
No 171
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=21.94 E-value=71 Score=20.44 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=26.3
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCc
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINP 62 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP 62 (80)
.-|=.++...|+++++++|+.+..|-|.-.-|..
T Consensus 138 ~KP~p~~f~~~~~~~~~~p~~~l~vgD~~~Di~~ 171 (175)
T TIGR01493 138 YKPDPVVYELVFDTVGLPPDRVLMVAAHQWDLIG 171 (175)
T ss_pred CCCCHHHHHHHHHHHCCCHHHeEeEecChhhHHH
Confidence 3577788889999999999999888776554443
No 172
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=21.72 E-value=1.5e+02 Score=16.26 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=16.8
Q ss_pred CCchhhhhhhhhhhhCCCCcce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
..|+...++.++++.+++-+.-
T Consensus 8 ~~~~~~~v~~~l~~~gi~~e~~ 29 (74)
T cd03045 8 GSPPCRAVLLTAKALGLELNLK 29 (74)
T ss_pred CCCcHHHHHHHHHHcCCCCEEE
Confidence 4478888888999999886553
No 173
>PLN02811 hydrolase
Probab=21.71 E-value=53 Score=22.38 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=35.4
Q ss_pred CCchhhhhhhhhhhhC---CCCcceeEEecCCcccCcccccceeee
Q 034866 29 AAPFTVVLKFAAEEFK---VPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFk---v~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
.-|-...+..|+++++ +++..+..|=|.=.||.-++.||--++
T Consensus 136 ~KP~p~~~~~a~~~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i 181 (220)
T PLN02811 136 GKPAPDIFLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVV 181 (220)
T ss_pred CCCCcHHHHHHHHHhCCCCCCccceEEEeccHhhHHHHHHCCCeEE
Confidence 3577889999999996 999999999888888888888885443
No 174
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=21.70 E-value=46 Score=21.46 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=30.3
Q ss_pred hhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 34 VVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 34 AVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
..++..++++++++..+..|-|.=.++...+.||..|.
T Consensus 150 ~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a 187 (201)
T TIGR01491 150 EAVERLKRELNPSLTETVAVGDSKNDLPMFEVADISIS 187 (201)
T ss_pred HHHHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEE
Confidence 56777788999999998888766667788888887765
No 175
>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]
Probab=21.29 E-value=57 Score=25.33 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=24.0
Q ss_pred hhhhhhhhhhhCCCCcceeEEecCCcccCccc
Q 034866 33 TVVLKFAAEEFKVPPQTSAIITNDGVGINPQQ 64 (80)
Q Consensus 33 tAVlkfaAEeFkv~~~TsAiITndGiGINP~Q 64 (80)
.-.-.+|||+|+++-..+.++.-++-+-+|+|
T Consensus 126 ~q~q~~aae~fk~~~~~~~~~~~~~~~~~~~~ 157 (209)
T KOG2239|consen 126 QQAQMQAAERFKVPQEAPGLIQEDTSATPPAQ 157 (209)
T ss_pred HHHHHHHHHhccCCccccccccccccCCCccc
Confidence 34456899999999888888877777655544
No 176
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.15 E-value=16 Score=19.27 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=21.9
Q ss_pred hhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 37 KFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 37 kfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+=+|+.++|++.|----.+.|... |..+.|
T Consensus 4 ~e~a~~~gv~~~tlr~~~~~g~l~-~~~~~~ 33 (49)
T cd04761 4 GELAKLTGVSPSTLRYYERIGLLS-PARTEG 33 (49)
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCC-CCcCCC
Confidence 447889999988876666788754 777664
No 177
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=21.07 E-value=40 Score=27.35 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=11.5
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||+|.+
T Consensus 595 i~V~D~G~Gi~~~~ 608 (914)
T PRK11466 595 VEVEDSGCGIDPAK 608 (914)
T ss_pred EEEEECCCCCCHHH
Confidence 45789999999864
No 178
>PF04104 DNA_primase_lrg: Eukaryotic and archaeal DNA primase, large subunit; InterPro: IPR007238 DNA primase is the polymerase that synthesises small RNA primers for the Okazaki fragments made during discontinuous DNA replication. DNA primase is a heterodimer of two subunits, the small subunit Pri1 (48 kDa in yeast), and the large subunit Pri2 (58 kDa in the yeast Saccharomyces cerevisiae) []. Both subunits participate in the formation of the active site, but the ATP binding site is located on the small subunit []. Primase function has also been demonstrated for human and mouse primase subunits [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 1ZT2_B 3Q36_A 3L9Q_B 2DLA_B 3LGB_B.
Probab=20.91 E-value=47 Score=24.52 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.7
Q ss_pred chhhhhhhhhhh
Q 034866 31 PFTVVLKFAAEE 42 (80)
Q Consensus 31 PFtAVlkfaAEe 42 (80)
||+.+++.++..
T Consensus 6 pf~~~~~lv~~r 17 (260)
T PF04104_consen 6 PFEDYLDLVRRR 17 (260)
T ss_dssp EHHHHHHHTTTC
T ss_pred eHHHHHHHHhcC
Confidence 799999988744
No 179
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=20.88 E-value=78 Score=20.74 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.1
Q ss_pred hhhhhhhhhhhhCCCCcceeEEecCC
Q 034866 32 FTVVLKFAAEEFKVPPQTSAIITNDG 57 (80)
Q Consensus 32 FtAVlkfaAEeFkv~~~TsAiITndG 57 (80)
+|--|+-|++.+++.--+--||+++|
T Consensus 83 ~T~~l~~~~~~l~i~llDHiIi~~~~ 108 (113)
T cd08071 83 LTKRLKEAGELLGIRLLDHIIVGDGG 108 (113)
T ss_pred HHHHHHHHHHHCCCEEeeEEEEcCCc
Confidence 67889999999999999999998865
No 180
>PRK13287 amiF formamidase; Provisional
Probab=20.83 E-value=79 Score=24.02 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEec
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITN 55 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITn 55 (80)
+.|||-+-.+++|+|++||+.-.-|+|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (333)
T PRK13287 292 DCPYTYMKDLAAGKYKLPWEDEIKVKD 318 (333)
T ss_pred cCchHHHHHHHhhhhcCccccceeecc
Confidence 459999999999999999999877764
No 181
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=20.66 E-value=1.4e+02 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=22.9
Q ss_pred CceEEEEEEecCC-------CCCceeEEeeCCCCchhh
Q 034866 4 RGKVSFKVTLTSD-------PKLPFKVFSVPEAAPFTV 34 (80)
Q Consensus 4 ~~KVtFKItltsd-------pklP~kvlsVPE~aPFtA 34 (80)
+++|++.|+.+-+ .+.+|||-.+|.-+|+-+
T Consensus 54 g~~v~I~Vs~~~~~g~~~~l~s~~FRVk~lP~P~~~i~ 91 (181)
T PF12080_consen 54 GKEVTITVSATNPDGKGVSLGSFTFRVKPLPDPTIYIA 91 (181)
T ss_pred CCeEEEEEEEEecCCCceeecceEEEeeeCCCCcceee
Confidence 5677777775544 557999999999997743
No 182
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=20.59 E-value=2.5e+02 Score=18.17 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=31.8
Q ss_pred EEEEEecCCCCCceeEEeeCC-----CCchhhhhhhhhhhhCCCCcceeEE
Q 034866 8 SFKVTLTSDPKLPFKVFSVPE-----AAPFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 8 tFKItltsdpklP~kvlsVPE-----~aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
+.|++...| -+.+++|. +..|.....=.++-|++++.+...|
T Consensus 2 ~vKv~y~~~----~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l 48 (91)
T cd06398 2 VVKVKYGGT----LRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSL 48 (91)
T ss_pred EEEEEeCCE----EEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEE
Confidence 456666555 46788886 4789999999999999988665555
No 183
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=20.55 E-value=44 Score=19.34 Aligned_cols=15 Identities=47% Similarity=0.410 Sum_probs=11.9
Q ss_pred hhhhhhhhCCCCcce
Q 034866 36 LKFAAEEFKVPPQTS 50 (80)
Q Consensus 36 lkfaAEeFkv~~~Ts 50 (80)
++-.|++|+|+..|.
T Consensus 17 ~~ela~~~~VS~~Ti 31 (57)
T PF08220_consen 17 VKELAEEFGVSEMTI 31 (57)
T ss_pred HHHHHHHHCcCHHHH
Confidence 456789999998873
No 184
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=20.50 E-value=1.5e+02 Score=17.25 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=23.4
Q ss_pred ceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecC
Q 034866 20 PFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITND 56 (80)
Q Consensus 20 P~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITnd 56 (80)
|++.+.++++++...+++...+ .++ ..++++++
T Consensus 1 ~~~~~~i~~~~~~~~~~~~~~~-~~~---~~~~V~d~ 33 (114)
T cd04602 1 ITDPSVLSPDHTVADVLEIKEK-KGF---SGIPVTED 33 (114)
T ss_pred CCCCeEcCCCCCHHHHHHHHHH-cCC---CceEEeeC
Confidence 4677889999999888887643 332 34677774
No 185
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=20.48 E-value=43 Score=24.71 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=11.1
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
-.|.|+|.||.|.+
T Consensus 470 i~V~D~G~gi~~~~ 483 (542)
T PRK11086 470 CEVSDDGPGIAPDE 483 (542)
T ss_pred EEEEECCCCCCHHH
Confidence 34689999999854
No 186
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=20.23 E-value=45 Score=19.35 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=9.3
Q ss_pred hhhhhhhCCCCcce
Q 034866 37 KFAAEEFKVPPQTS 50 (80)
Q Consensus 37 kfaAEeFkv~~~Ts 50 (80)
+-.|++|+|+..|-
T Consensus 26 ~~ia~~fgv~~sTv 39 (53)
T PF04218_consen 26 RDIAREFGVSRSTV 39 (53)
T ss_dssp HHHHHHHT--CCHH
T ss_pred HHHHHHhCCCHHHH
Confidence 44689999998875
No 187
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=20.18 E-value=60 Score=28.04 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.0
Q ss_pred hhhhhhhhhhCCCCcc
Q 034866 34 VVLKFAAEEFKVPPQT 49 (80)
Q Consensus 34 AVlkfaAEeFkv~~~T 49 (80)
++.+||.||+++|+.-
T Consensus 5 el~~Wa~eEmg~p~~~ 20 (632)
T PF14817_consen 5 ELKRWAQEEMGYPPAS 20 (632)
T ss_pred HHHHHHHHHhCCCCCC
Confidence 6889999999999763
No 188
>PRK13557 histidine kinase; Provisional
Probab=20.10 E-value=44 Score=24.37 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.2
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||.|+.
T Consensus 327 i~v~D~G~Gi~~~~ 340 (540)
T PRK13557 327 IAVTDTGSGMPPEI 340 (540)
T ss_pred EEEEcCCCCCCHHH
Confidence 55689999998864
No 189
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=20.00 E-value=44 Score=19.32 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.8
Q ss_pred hhhhhhhhhhhCCCCcc
Q 034866 33 TVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 33 tAVlkfaAEeFkv~~~T 49 (80)
..+++-+|++|+|+++.
T Consensus 3 ~~I~~~Va~~~~i~~~~ 19 (60)
T smart00760 3 EEIIEAVAEYFGVKPED 19 (60)
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 35788899999998764
Done!