Query 034866
Match_columns 80
No_of_seqs 53 out of 55
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 11:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j0g_A Hypothetical protein 18 100.0 4.3E-55 1.5E-59 295.5 5.9 74 2-75 6-79 (92)
2 4gdk_A Ubiquitin-like protein 94.8 0.049 1.7E-06 34.7 4.6 72 3-74 2-75 (91)
3 1wz3_A Autophagy 12B, ATG12B, 92.1 0.17 5.9E-06 32.5 3.8 68 4-73 11-79 (96)
4 3w1s_C Ubiquitin-like protein 88.4 0.7 2.4E-05 29.5 4.2 69 4-74 6-75 (91)
5 2jxx_A Nfatc2-interacting prot 85.2 3 0.0001 26.5 5.9 64 5-71 24-87 (97)
6 3gyg_A NTD biosynthesis operon 83.7 1.9 6.4E-05 28.5 4.6 53 15-67 195-247 (289)
7 2r2q_A Gamma-aminobutyric acid 83.4 2.4 8.1E-05 27.2 4.9 75 5-79 26-107 (110)
8 2io0_B Small ubiquitin-related 82.1 6 0.0002 24.3 6.2 62 4-69 3-64 (91)
9 2daf_A FLJ35834 protein; hypot 79.9 7.2 0.00025 26.2 6.5 48 4-53 13-60 (118)
10 3goe_A DNA repair protein RAD6 79.2 2.3 7.8E-05 27.8 3.7 49 18-66 18-66 (82)
11 3dv9_A Beta-phosphoglucomutase 78.5 0.71 2.4E-05 28.4 1.1 48 27-74 162-211 (247)
12 2hi0_A Putative phosphoglycola 77.3 0.5 1.7E-05 30.1 0.1 44 26-69 161-204 (240)
13 2ah5_A COG0546: predicted phos 77.3 0.57 2E-05 29.3 0.4 41 28-68 135-175 (210)
14 4g9b_A Beta-PGM, beta-phosphog 76.9 0.58 2E-05 30.4 0.3 42 27-68 146-187 (243)
15 1wm3_A Ubiquitin-like protein 76.8 2.5 8.5E-05 24.3 3.0 49 23-72 15-63 (72)
16 1yv9_A Hydrolase, haloacid deh 75.8 0.9 3.1E-05 29.3 1.0 47 29-75 182-231 (264)
17 2eke_C Ubiquitin-like protein 75.6 7.5 0.00026 24.9 5.4 61 4-69 29-89 (106)
18 1vd2_A Protein kinase C, IOTA 75.2 12 0.00043 23.6 6.3 44 2-49 2-45 (89)
19 2k8h_A Small ubiquitin protein 75.1 12 0.0004 24.0 6.2 61 5-69 25-85 (110)
20 3kbb_A Phosphorylated carbohyd 75.0 0.76 2.6E-05 28.3 0.5 49 27-75 137-188 (216)
21 3a4r_A Nfatc2-interacting prot 74.9 10 0.00035 22.2 6.6 64 4-70 5-68 (79)
22 2ho4_A Haloacid dehalogenase-l 74.6 1.5 5E-05 27.7 1.7 46 29-74 178-226 (259)
23 3ehg_A Sensor kinase (YOCF pro 74.2 1.4 4.7E-05 26.0 1.5 15 51-65 74-88 (128)
24 1eo6_A GATE-16, golgi-associat 73.7 3.6 0.00012 26.7 3.5 69 5-73 27-98 (117)
25 3iru_A Phoshonoacetaldehyde hy 73.6 0.87 3E-05 28.6 0.5 49 26-74 164-215 (277)
26 3smv_A S-(-)-azetidine-2-carbo 73.6 0.81 2.8E-05 27.7 0.3 38 30-68 156-194 (240)
27 2zjd_A Microtubule-associated 73.3 2.6 8.9E-05 28.3 2.8 66 15-80 46-118 (130)
28 3qnm_A Haloacid dehalogenase-l 73.1 1.7 5.8E-05 26.4 1.7 42 27-68 159-201 (240)
29 2d07_B Ubiquitin-like protein 73.0 7.7 0.00026 23.6 4.7 63 5-71 16-78 (93)
30 3m1y_A Phosphoserine phosphata 72.1 2.7 9.1E-05 25.5 2.4 44 27-70 138-181 (217)
31 2x4d_A HLHPP, phospholysine ph 72.0 1.4 4.6E-05 27.6 1.1 43 26-68 186-229 (271)
32 4ex6_A ALNB; modified rossman 71.8 1 3.5E-05 27.8 0.5 43 26-68 156-198 (237)
33 2om6_A Probable phosphoserine 71.1 1.8 6.3E-05 26.1 1.5 43 27-69 155-198 (235)
34 1wz0_A Ubiquitin-like protein 70.8 10 0.00035 23.9 5.1 64 5-72 23-86 (104)
35 3u26_A PF00702 domain protein; 70.5 2.7 9.4E-05 25.5 2.2 42 27-68 152-194 (234)
36 3ib6_A Uncharacterized protein 70.4 1.6 5.6E-05 27.4 1.2 40 30-69 97-137 (189)
37 4gib_A Beta-phosphoglucomutase 70.4 1.1 3.6E-05 29.2 0.4 42 27-68 167-208 (250)
38 3ehh_A Sensor kinase (YOCF pro 69.8 1.7 5.9E-05 27.0 1.3 15 51-65 164-178 (218)
39 3l8h_A Putative haloacid dehal 69.6 1 3.5E-05 27.5 0.1 49 27-75 98-148 (179)
40 3jyu_A Ubiquitin carboxyl-term 69.6 6.5 0.00022 27.4 4.3 48 7-55 140-187 (231)
41 3epr_A Hydrolase, haloacid deh 69.5 1.7 5.9E-05 28.4 1.2 47 29-75 181-230 (264)
42 2c4n_A Protein NAGD; nucleotid 68.5 1.8 6.3E-05 26.3 1.1 42 27-68 173-215 (250)
43 3mc1_A Predicted phosphatase, 68.4 1.8 6E-05 26.4 1.0 42 27-68 139-180 (226)
44 4a3p_A Ubiquitin carboxyl-term 68.3 7.4 0.00025 26.8 4.3 48 7-55 128-175 (217)
45 3vay_A HAD-superfamily hydrola 68.0 2.3 7.9E-05 25.9 1.5 43 26-68 151-194 (230)
46 3umg_A Haloacid dehalogenase; 67.4 1.3 4.5E-05 27.1 0.3 43 26-68 165-207 (254)
47 3qxg_A Inorganic pyrophosphata 66.8 1.9 6.6E-05 26.9 1.0 48 27-74 163-212 (243)
48 1qq5_A Protein (L-2-haloacid d 66.0 1.5 5E-05 28.0 0.3 43 26-68 143-185 (253)
49 1zrn_A L-2-haloacid dehalogena 66.0 1.5 5E-05 27.1 0.3 42 27-68 148-189 (232)
50 2g80_A Protein UTR4; YEL038W, 66.0 1.5 5E-05 30.1 0.3 39 30-68 187-225 (253)
51 2hoq_A Putative HAD-hydrolase 65.8 2.9 0.0001 26.2 1.7 49 27-75 147-198 (241)
52 2io1_B Small ubiquitin-related 65.4 21 0.0007 21.8 5.9 61 5-69 6-66 (94)
53 2gfh_A Haloacid dehalogenase-l 65.2 2.6 9E-05 27.7 1.5 42 27-68 173-215 (260)
54 3um9_A Haloacid dehalogenase, 65.0 1.5 5E-05 26.7 0.2 42 27-68 149-190 (230)
55 2go7_A Hydrolase, haloacid deh 64.7 1.8 6.3E-05 25.3 0.6 39 30-68 140-178 (207)
56 2kvr_A Ubiquitin carboxyl-term 64.7 7 0.00024 25.7 3.5 32 21-52 57-88 (130)
57 3zxq_A Hypoxia sensor histidin 64.0 3.5 0.00012 23.6 1.7 16 50-65 71-86 (124)
58 2no4_A (S)-2-haloacid dehaloge 63.5 1.6 5.6E-05 27.2 0.2 42 27-68 158-199 (240)
59 3zxo_A Redox sensor histidine 63.3 3.3 0.00011 23.8 1.5 15 50-64 75-89 (129)
60 3qgm_A P-nitrophenyl phosphata 63.1 2.9 0.0001 26.9 1.4 49 27-75 184-235 (268)
61 2pmv_A Gastric intrinsic facto 63.0 8.2 0.00028 30.2 4.1 46 15-61 309-361 (399)
62 3nas_A Beta-PGM, beta-phosphog 63.0 1.3 4.3E-05 27.3 -0.4 41 28-68 144-184 (233)
63 3kyd_D Small ubiquitin-related 62.9 28 0.00094 22.8 6.1 61 5-69 39-99 (115)
64 3e58_A Putative beta-phosphogl 62.8 1.9 6.5E-05 25.4 0.4 42 27-68 142-183 (214)
65 3jz3_A Sensor protein QSEC; he 62.6 2.6 8.8E-05 25.9 1.0 14 51-64 148-161 (222)
66 2pib_A Phosphorylated carbohyd 62.2 2.1 7E-05 25.3 0.5 42 27-68 137-178 (216)
67 1te2_A Putative phosphatase; s 62.0 2.2 7.7E-05 25.5 0.6 40 29-68 149-188 (226)
68 3kzx_A HAD-superfamily hydrola 61.5 2 6.7E-05 26.5 0.3 41 27-67 156-197 (231)
69 2omz_B Epithelial-cadherin; le 61.4 2.7 9.3E-05 25.6 0.9 47 24-73 11-68 (105)
70 3tix_A Ubiquitin-like protein 61.2 16 0.00055 27.0 5.2 61 4-69 55-115 (207)
71 2bb6_A TCII, TC II, transcobal 61.2 12 0.00043 29.3 4.9 57 5-61 315-377 (414)
72 3pdw_A Uncharacterized hydrola 61.0 3.6 0.00012 26.5 1.5 48 28-75 181-231 (266)
73 3ed5_A YFNB; APC60080, bacillu 60.2 3.9 0.00013 24.8 1.5 42 27-68 155-198 (238)
74 2c2a_A Sensor histidine kinase 60.2 3.6 0.00012 26.5 1.4 14 51-64 176-189 (258)
75 4dcc_A Putative haloacid dehal 60.0 2 6.9E-05 26.8 0.2 42 27-68 170-211 (229)
76 2rbk_A Putative uncharacterize 60.0 4.6 0.00016 26.3 1.9 43 26-68 182-224 (261)
77 1v6e_A Cytoskeleton-associated 59.9 24 0.00083 20.8 5.8 51 3-55 4-54 (95)
78 1yns_A E-1 enzyme; hydrolase f 59.9 1.9 6.5E-05 28.8 0.0 40 29-68 186-225 (261)
79 3rui_B Autophagy-related prote 59.6 8.1 0.00028 25.4 3.1 57 17-73 44-100 (118)
80 3s6j_A Hydrolase, haloacid deh 59.2 2.5 8.6E-05 25.6 0.5 41 28-68 145-185 (233)
81 3umc_A Haloacid dehalogenase; 58.7 2.3 8E-05 26.3 0.3 43 26-68 169-211 (254)
82 1vjr_A 4-nitrophenylphosphatas 58.7 2 6.9E-05 27.6 -0.0 43 26-68 191-234 (271)
83 2al3_A TUG long isoform; TUG U 57.9 8 0.00027 25.0 2.7 29 22-50 22-50 (90)
84 3l5k_A Protein GS1, haloacid d 57.8 2.8 9.5E-05 26.3 0.5 41 28-68 169-211 (250)
85 3pge_A SUMO-modified prolifera 57.6 23 0.00079 25.1 5.4 60 4-68 27-86 (200)
86 2wer_A ATP-dependent molecular 57.5 2.7 9.1E-05 28.7 0.4 15 50-64 74-88 (220)
87 2o2x_A Hypothetical protein; s 57.3 3.5 0.00012 26.3 0.9 49 27-75 134-185 (218)
88 4ggc_A P55CDC, cell division c 57.0 4.8 0.00016 24.9 1.5 14 17-30 10-23 (318)
89 3uf8_A Ubiquitin-like protein 56.5 21 0.00072 24.4 4.9 61 4-69 19-79 (209)
90 2hcf_A Hydrolase, haloacid deh 56.5 2.8 9.6E-05 25.5 0.4 39 30-68 151-191 (234)
91 1ysr_A Sensor-type histidine k 56.1 4.8 0.00017 23.6 1.4 14 51-64 80-93 (150)
92 3m95_A Autophagy related prote 55.6 9.2 0.00031 25.6 2.9 58 17-74 50-107 (125)
93 3umb_A Dehalogenase-like hydro 55.6 2.6 9E-05 25.7 0.1 41 28-68 153-193 (233)
94 3a0y_A Sensor protein; ATP-LID 55.3 4.4 0.00015 23.5 1.1 14 51-64 82-95 (152)
95 3i28_A Epoxide hydrolase 2; ar 55.3 2.6 8.8E-05 28.6 0.1 43 26-68 156-198 (555)
96 1r62_A Nitrogen regulation pro 55.2 3.8 0.00013 23.9 0.8 14 51-64 94-107 (160)
97 3ddh_A Putative haloacid dehal 55.1 5 0.00017 23.9 1.3 38 31-68 158-196 (234)
98 2b0c_A Putative phosphatase; a 54.8 3.1 0.0001 25.0 0.3 39 30-68 148-186 (206)
99 2i6x_A Hydrolase, haloacid deh 54.7 2.9 9.8E-05 25.3 0.2 42 27-68 147-188 (211)
100 2wf7_A Beta-PGM, beta-phosphog 54.1 3 0.0001 25.0 0.2 41 28-68 143-183 (221)
101 1i58_A Chemotaxis protein CHEA 53.6 3.5 0.00012 25.4 0.5 14 51-64 94-107 (189)
102 2l32_A Small archaeal modifier 53.4 27 0.00091 20.7 4.4 40 20-64 11-50 (74)
103 1id0_A PHOQ histidine kinase; 53.2 5.8 0.0002 23.2 1.4 14 51-64 77-90 (152)
104 2pke_A Haloacid delahogenase-l 52.8 6.1 0.00021 24.8 1.5 44 31-74 163-209 (251)
105 1swv_A Phosphonoacetaldehyde h 52.7 4.4 0.00015 25.5 0.8 48 27-74 157-207 (267)
106 2fdr_A Conserved hypothetical 52.4 3.1 0.00011 25.2 0.1 39 30-68 143-181 (229)
107 1wr8_A Phosphoglycolate phosph 52.2 7.5 0.00025 25.1 1.9 42 26-67 148-189 (231)
108 1b63_A MUTL; DNA mismatch repa 52.0 6.4 0.00022 28.6 1.7 17 49-65 54-70 (333)
109 1l7m_A Phosphoserine phosphata 51.7 5.2 0.00018 23.8 1.0 38 31-68 143-180 (211)
110 2nyv_A Pgpase, PGP, phosphogly 51.7 3.9 0.00014 25.6 0.5 40 29-68 138-177 (222)
111 2ior_A Chaperone protein HTPG; 51.3 4.6 0.00016 28.1 0.8 16 50-65 95-110 (235)
112 2pr7_A Haloacid dehalogenase/e 51.0 3.5 0.00012 23.3 0.2 41 28-68 72-112 (137)
113 3h9d_A ATG8, microtubule-assoc 50.8 9.3 0.00032 25.2 2.2 57 17-73 45-101 (119)
114 3sd7_A Putative phosphatase; s 50.5 4.2 0.00014 25.2 0.5 42 27-68 163-205 (240)
115 2gqp_A Endoplasmin; GRP94, HSP 50.4 4.8 0.00016 28.2 0.8 15 50-64 80-94 (236)
116 2c5l_C Phosphoinositide-specif 50.3 15 0.00052 24.6 3.3 39 8-46 7-46 (117)
117 3a0r_A Sensor protein; four he 50.2 5.6 0.00019 26.1 1.1 14 51-64 279-292 (349)
118 2hdo_A Phosphoglycolate phosph 50.1 8.3 0.00028 23.3 1.8 42 29-70 137-178 (209)
119 3fzq_A Putative hydrolase; YP_ 50.0 12 0.00041 23.8 2.6 42 26-67 195-236 (274)
120 2e6j_A Hydin protein; PAPD, st 49.3 15 0.0005 21.5 2.8 45 4-50 27-71 (112)
121 2gmw_A D,D-heptose 1,7-bisphos 48.8 4.5 0.00015 26.0 0.4 48 28-75 129-179 (211)
122 3sl2_A Sensor histidine kinase 48.0 8.2 0.00028 23.4 1.5 14 51-64 80-93 (177)
123 3m9l_A Hydrolase, haloacid deh 47.8 3.3 0.00011 25.3 -0.3 40 29-68 126-165 (205)
124 3cnh_A Hydrolase family protei 47.6 4.5 0.00015 24.3 0.3 41 28-68 139-179 (200)
125 4eek_A Beta-phosphoglucomutase 46.5 4.5 0.00015 25.5 0.2 41 28-68 166-206 (259)
126 2hx1_A Predicted sugar phospha 46.5 5.5 0.00019 26.1 0.6 46 30-75 204-256 (284)
127 1bxd_A ENVZ(290-450), protein 46.5 7.5 0.00026 23.2 1.2 14 51-64 80-93 (161)
128 3fv5_A DNA topoisomerase 4 sub 46.5 9.1 0.00031 26.2 1.7 15 50-64 50-64 (201)
129 3k1z_A Haloacid dehalogenase-l 46.3 6.4 0.00022 25.4 0.9 42 27-68 158-200 (263)
130 2wm8_A MDP-1, magnesium-depend 46.1 5 0.00017 24.9 0.3 38 31-68 121-158 (187)
131 1b3q_A Protein (chemotaxis pro 45.5 5.3 0.00018 28.7 0.4 14 51-64 153-166 (379)
132 2dzi_A Ubiquitin-like protein 45.2 36 0.0012 18.5 5.0 47 19-67 18-64 (81)
133 3nuq_A Protein SSM1, putative 44.6 8 0.00027 24.9 1.1 40 29-68 203-243 (282)
134 3t0h_A Heat shock protein HSP 44.1 5.8 0.0002 28.1 0.4 17 49-65 79-95 (228)
135 3d36_A Sporulation kinase B; G 43.7 6.1 0.00021 24.5 0.5 14 51-64 158-171 (244)
136 2i1s_A Hypothetical protein; m 43.6 45 0.0015 22.3 4.8 52 4-56 6-60 (188)
137 1oey_A P67-PHOX, neutrophil cy 43.4 21 0.00071 22.5 2.9 28 22-49 16-43 (83)
138 2wjv_D Regulator of nonsense t 43.1 25 0.00085 22.2 3.3 30 5-34 66-95 (97)
139 1gkz_A [3-methyl-2-oxobutanoat 41.8 13 0.00043 26.3 1.9 14 51-64 281-294 (388)
140 4ew8_A Sensor protein DIVL; si 41.6 6.9 0.00024 24.9 0.5 14 51-64 190-203 (268)
141 2qlt_A (DL)-glycerol-3-phospha 41.1 5.9 0.0002 25.9 0.1 43 26-68 166-215 (275)
142 2oda_A Hypothetical protein ps 40.9 7.8 0.00027 25.0 0.6 49 27-75 84-135 (196)
143 2kzr_A Ubiquitin thioesterase 40.3 31 0.0011 19.9 3.2 32 23-54 13-45 (86)
144 2oyc_A PLP phosphatase, pyrido 40.3 9.2 0.00032 25.6 1.0 42 27-68 212-254 (306)
145 2p9j_A Hypothetical protein AQ 40.2 15 0.0005 22.0 1.8 42 29-70 82-123 (162)
146 1rlm_A Phosphatase; HAD family 40.1 15 0.0005 24.2 1.9 42 26-67 186-227 (271)
147 1yc1_A HSP 86, heat shock prot 40.0 8.6 0.00029 27.7 0.8 16 49-64 115-130 (264)
148 2fpr_A Histidine biosynthesis 39.8 6.7 0.00023 24.7 0.2 42 29-70 115-156 (176)
149 3e8m_A Acylneuraminate cytidyl 39.7 16 0.00054 21.9 1.9 40 29-68 77-116 (164)
150 3na3_A DNA mismatch repair pro 39.4 13 0.00044 28.0 1.7 16 50-65 59-74 (348)
151 4ikh_A Glutathione S-transfera 39.4 22 0.00075 22.6 2.6 30 21-52 23-52 (244)
152 2fi1_A Hydrolase, haloacid deh 39.0 11 0.00038 22.2 1.1 40 27-68 134-173 (190)
153 2pjh_A Protein NPL4, nuclear p 38.9 20 0.00067 21.3 2.2 53 22-74 16-72 (80)
154 1n91_A ORF, hypothetical prote 38.7 16 0.00053 24.0 1.8 36 18-53 37-73 (108)
155 1h7s_A PMS1 protein homolog 2; 38.1 14 0.00048 27.5 1.7 23 50-73 65-87 (365)
156 1qy5_A Endoplasmin; GRP94, NEC 37.7 9.8 0.00033 27.6 0.8 15 50-64 76-90 (269)
157 3d6j_A Putative haloacid dehal 37.4 8.4 0.00029 22.9 0.4 40 29-68 144-183 (225)
158 3h4l_A DNA mismatch repair pro 36.8 15 0.00051 27.7 1.7 17 49-65 55-71 (367)
159 1zo0_A ODC-AZ, ornithine decar 36.3 16 0.00054 24.8 1.6 43 6-48 22-79 (126)
160 3o0i_A HSP90AA1 protein; HSP90 36.2 9.1 0.00031 28.0 0.4 17 49-65 107-123 (256)
161 2bwf_A Ubiquitin-like protein 35.9 52 0.0018 17.6 4.7 44 9-54 5-48 (77)
162 4dw8_A Haloacid dehalogenase-l 35.9 19 0.00064 23.2 1.9 42 26-67 192-233 (279)
163 2e0a_A Pyruvate dehydrogenase 35.8 14 0.00048 26.3 1.4 14 51-64 272-285 (394)
164 2hsz_A Novel predicted phospha 35.7 8.3 0.00028 24.6 0.2 42 27-68 167-208 (243)
165 2zg6_A Putative uncharacterize 34.5 29 0.001 21.4 2.6 36 31-69 151-187 (220)
166 2fea_A 2-hydroxy-3-keto-5-meth 34.4 13 0.00043 23.7 0.9 36 38-73 154-189 (236)
167 2l76_A Nfatc2-interacting prot 34.2 59 0.002 21.0 4.1 57 6-67 21-77 (95)
168 2ylm_A Ubiquitin carboxyl-term 33.6 34 0.0011 26.7 3.3 32 19-50 35-66 (530)
169 3nmq_A Heat shock protein HSP 33.3 11 0.00037 27.3 0.4 17 49-65 86-102 (239)
170 1mu5_A Type II DNA topoisomera 32.2 20 0.00067 27.7 1.7 15 50-64 72-86 (471)
171 3mn1_A Probable YRBI family ph 32.0 16 0.00054 23.2 1.0 38 28-67 93-130 (189)
172 1m1s_A WR4; structural genomic 32.0 27 0.00094 22.7 2.2 23 3-25 23-45 (116)
173 1xr7_A Genome polyprotein; RNA 32.0 43 0.0015 25.4 3.6 51 22-77 329-379 (460)
174 3fvv_A Uncharacterized protein 31.9 20 0.00068 22.1 1.4 39 33-71 161-202 (232)
175 3dnp_A Stress response protein 31.8 20 0.0007 23.2 1.5 42 26-67 197-238 (290)
176 3a9j_A Ubiquitin; protein comp 31.7 60 0.0021 17.1 4.8 42 23-65 14-55 (76)
177 1kij_A DNA gyrase subunit B; t 31.6 19 0.00064 27.0 1.5 16 50-65 65-80 (390)
178 2r8e_A 3-deoxy-D-manno-octulos 31.2 24 0.00082 22.1 1.8 43 27-69 97-139 (188)
179 2btz_A Pyruvate dehydrogenase 31.2 12 0.00042 26.4 0.4 14 51-64 273-286 (394)
180 3peh_A Endoplasmin homolog; st 30.2 13 0.00045 27.7 0.4 16 49-64 93-108 (281)
181 3ij5_A 3-deoxy-D-manno-octulos 29.4 25 0.00086 23.3 1.7 39 30-68 123-161 (211)
182 2q8g_A [pyruvate dehydrogenase 29.3 16 0.00056 26.0 0.8 14 51-64 285-298 (407)
183 2zbk_B Type 2 DNA topoisomeras 28.3 25 0.00085 27.7 1.7 15 50-64 71-85 (530)
184 3fio_A A cystathionine beta-sy 28.2 66 0.0023 16.4 3.6 31 23-57 2-32 (70)
185 3n1u_A Hydrolase, HAD superfam 28.1 21 0.00071 22.8 1.1 39 30-68 93-131 (191)
186 1wgd_A Homocysteine-responsive 27.9 90 0.0031 17.9 6.0 50 4-54 5-56 (93)
187 3n07_A 3-deoxy-D-manno-octulos 27.9 32 0.0011 22.5 2.0 39 29-67 98-136 (195)
188 1y8o_A [pyruvate dehydrogenase 27.9 18 0.00061 26.1 0.8 14 51-64 296-309 (419)
189 3afp_A Single-stranded DNA-bin 27.3 48 0.0017 22.2 2.8 20 1-20 1-20 (168)
190 3n3k_B Ubiquitin; hydrolase, p 26.8 83 0.0028 17.1 4.3 32 23-54 17-48 (85)
191 1th8_A Anti-sigma F factor; SP 26.3 27 0.00091 20.6 1.3 11 51-61 77-87 (145)
192 4duh_A DNA gyrase subunit B; s 26.2 29 0.00099 24.3 1.6 16 49-64 67-82 (220)
193 1wxa_A Afadin, AF-6 protein; R 26.0 78 0.0027 20.2 3.6 33 15-47 19-51 (116)
194 3l7y_A Putative uncharacterize 26.0 29 0.001 23.1 1.5 41 27-67 224-264 (304)
195 3ttz_A DNA gyrase subunit B; p 25.5 33 0.0011 23.5 1.8 16 49-64 63-78 (198)
196 1wgg_A Ubiquitin carboxyl-term 25.4 1.1E+02 0.0038 18.1 4.5 44 9-53 8-51 (96)
197 1y4s_A Chaperone protein HTPG; 24.9 21 0.00073 28.6 0.8 16 49-64 74-89 (559)
198 1v5t_A 8430435I17RIK protein; 24.8 66 0.0023 18.6 2.8 36 18-53 16-51 (90)
199 3hrd_B Nicotinate dehydrogenas 24.8 46 0.0016 24.3 2.5 48 9-56 26-74 (330)
200 1rkq_A Hypothetical protein YI 24.7 44 0.0015 22.1 2.2 42 26-67 193-234 (282)
201 1v86_A DNA segment, CHR 7, way 24.7 1.1E+02 0.0039 17.9 5.1 44 6-53 17-60 (95)
202 2w43_A Hypothetical 2-haloalka 24.7 17 0.00059 21.9 0.2 40 27-68 125-164 (201)
203 1t0y_A Tubulin folding cofacto 23.6 1.4E+02 0.0046 18.5 6.9 49 5-55 5-53 (122)
204 1k8q_A Triacylglycerol lipase, 23.6 91 0.0031 19.7 3.4 38 39-76 19-68 (377)
205 2ef7_A Hypothetical protein ST 23.5 57 0.0019 18.5 2.3 31 23-57 14-44 (133)
206 1ibx_B Chimera of IGG binding 23.3 1.1E+02 0.0037 21.4 4.1 55 7-61 50-116 (145)
207 2uyz_B Small ubiquitin-related 22.2 1.1E+02 0.0036 16.7 6.1 43 24-67 18-60 (79)
208 2ioq_A Chaperone protein HTPG; 22.0 26 0.0009 28.5 0.8 16 49-64 74-89 (624)
209 4emv_A DNA topoisomerase IV, B 21.9 41 0.0014 23.8 1.7 17 48-64 71-87 (226)
210 4da1_A Protein phosphatase 1K, 21.9 19 0.00065 26.2 0.0 65 5-74 29-93 (389)
211 3ied_A Heat shock protein; HSP 21.9 23 0.00079 26.8 0.4 15 50-64 131-145 (272)
212 1row_A SSP-19, MSP-domain prot 21.8 72 0.0025 20.1 2.7 21 5-25 17-37 (109)
213 3n6m_A RNA-dependent RNA polym 21.2 77 0.0026 24.4 3.2 51 22-77 331-381 (462)
214 1nf2_A Phosphatase; structural 21.1 43 0.0015 21.9 1.6 42 26-67 185-226 (268)
215 1nrw_A Hypothetical protein, h 20.9 42 0.0015 22.1 1.5 35 33-67 218-252 (288)
216 1gnw_A Glutathione S-transfera 20.8 1.2E+02 0.0042 18.3 3.6 29 21-50 3-31 (211)
217 3dbh_I NEDD8; cell cycle, acti 20.4 1.2E+02 0.0041 16.6 5.3 47 7-54 11-57 (88)
No 1
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=100.00 E-value=4.3e-55 Score=295.48 Aligned_cols=74 Identities=69% Similarity=1.048 Sum_probs=71.7
Q ss_pred CCCceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeeee
Q 034866 2 TSRGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLNF 75 (80)
Q Consensus 2 ~~~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhgf 75 (80)
++++|||||||||||||||||||||||+||||||||||||||+|||+|||||||||+||||||||||||||||=
T Consensus 6 ~~~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 6 ATMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp CCSCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred cCCceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999993
No 2
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=94.76 E-value=0.049 Score=34.71 Aligned_cols=72 Identities=19% Similarity=0.342 Sum_probs=59.6
Q ss_pred CCceEEEEEEecCC-CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEe-cCCcccCcccccceeeeeee
Q 034866 3 SRGKVSFKVTLTSD-PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIIT-NDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 3 ~~~KVtFKItltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiIT-ndGiGINP~QtAG~VFlkhg 74 (80)
+..||+.+..-++| |.+-=+...||.+-.|..+++|--.+.+++++.+.-+- |+=.=-+|+++-|++|=+|+
T Consensus 2 ~~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k 75 (91)
T 4gdk_A 2 SKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG 75 (91)
T ss_dssp --CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC
T ss_pred CCceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC
Confidence 46788888888766 89999999999999999999999999999998886654 44445688999999987664
No 3
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=92.06 E-value=0.17 Score=32.52 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=54.2
Q ss_pred CceEEEEEEecCC-CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeee
Q 034866 4 RGKVSFKVTLTSD-PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFL 73 (80)
Q Consensus 4 ~~KVtFKItltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh 73 (80)
..||+.++.-++| |.+.=+...||++-.|..+++|--.+.+++ .--+.-|+-.=-+|+|+-|++|=.|
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~ 79 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNF 79 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHH
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHh
Confidence 3589888888877 778889999999999999999999999998 2233345446668899999987655
No 4
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=88.38 E-value=0.7 Score=29.51 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=49.9
Q ss_pred CceEEEEEEecCC-CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeee
Q 034866 4 RGKVSFKVTLTSD-PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 4 ~~KVtFKItltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhg 74 (80)
..||+.+..-+.| |.+--+...||.+-.|..+++|--.+.++ +.--+--|+=.=-+|+++-|++|=.|+
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk 75 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK 75 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC
Confidence 5688888777666 89999999999999999999999999999 222333465556788999999987654
No 5
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=85.22 E-value=3 Score=26.52 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=45.7
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
.+++.|+.- .|-+. --.+.|-..+||..+.+.-||+.++++.+ .-..=||-=|+|.+|....=|
T Consensus 24 ~~I~LkV~~-~dg~~-~v~fkIk~~t~l~kLm~aY~~~~g~~~~~-vrF~FDG~rI~~~~TP~dLdM 87 (97)
T 2jxx_A 24 QQLQLRVQG-KEKHQ-TLEVSLSRDSPLKTLMSHYEEAMGLSGRK-LSFFFDGTKLSGRELPADLGM 87 (97)
T ss_dssp SEEEEEEEE-SSSSC-EEEEEEETTSCHHHHHHHHHHHTTCSSSC-CEEEETTEECCSCSCHHHHTC
T ss_pred CeEEEEEEc-CCCCE-EEEEEECCCChHHHHHHHHHHHHCCCccc-EEEEECCEEcCCCCCHHHcCC
Confidence 445555432 23322 22466789999999999999999999875 445668999999999865433
No 6
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}
Probab=83.75 E-value=1.9 Score=28.47 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=43.8
Q ss_pred CCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 15 SDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 15 sdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|+.-.+-+-.+|...|=...+++++++++++++.+..|=|+...|.-.+.||
T Consensus 195 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag 247 (289)
T 3gyg_A 195 GDPEDSYDVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVG 247 (289)
T ss_dssp TCCTTEEEEEEEESCCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSS
T ss_pred cCCCCceEEEEEeCCCCHHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCC
Confidence 44444466666788888889999999999999999999998888888777777
No 7
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=83.41 E-value=2.4 Score=27.21 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=56.7
Q ss_pred ceEEEEEEecCCCCCce---eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeee----eeee
Q 034866 5 GKVSFKVTLTSDPKLPF---KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFL----NFVS 77 (80)
Q Consensus 5 ~KVtFKItltsdpklP~---kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh----gf~~ 77 (80)
.+|-..|.-+...++|. +-..||.+..+..++.+--.+.++++..+.-+-.+++=.+++++-|++|=+| ||.-
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLy 105 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLY 105 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEE
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEE
Confidence 45555555554334554 7789999999999999999999999999866677777778889999998766 5554
Q ss_pred ee
Q 034866 78 FQ 79 (80)
Q Consensus 78 ~~ 79 (80)
..
T Consensus 106 i~ 107 (110)
T 2r2q_A 106 VA 107 (110)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 8
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=82.06 E-value=6 Score=24.29 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=45.7
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
..+++.|+.- .|-+ +. .+.|-..+||..+.+--||+.++++..--.+- ||-=|+|.+|....
T Consensus 3 ~~~i~ikVk~-~~g~-~v-~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl 64 (91)
T 2io0_B 3 NDHINLKVAG-QDGS-VV-QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL 64 (91)
T ss_dssp -CEEEEEEEC-TTSC-EE-EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred CCeEEEEEEC-CCCC-EE-EEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3566666652 3333 33 46678999999999999999999997655544 79999999998654
No 9
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.94 E-value=7.2 Score=26.24 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=39.5
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
.+.+||||.++++. +=+ .+++++++....+=.-.|++|++|+..--+|
T Consensus 13 ~~~itvkv~l~~~~-~k~-tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI 60 (118)
T 2daf_A 13 DSLATVKVVLIPVG-QEI-VIPFKVDTILKYLKDHFSHLLGIPHSVLQIR 60 (118)
T ss_dssp SSCEEEEEEETTTC-CEE-EEEECSSSCSHHHHHHHHHHHTCCTTTEEEE
T ss_pred CccEEEEEEEcCCC-cEE-EEEeCCCCcHHHHHHHHHhhhCCChHHEEEE
Confidence 46799999988763 334 6789999999999888999999999887665
No 10
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=79.17 E-value=2.3 Score=27.78 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=42.5
Q ss_pred CCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccc
Q 034866 18 KLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSA 66 (80)
Q Consensus 18 klP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtA 66 (80)
|.+==.++||-++++.-+++--|++.++++.++.-.-=||-=++|.||-
T Consensus 18 ~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp 66 (82)
T 3goe_A 18 KSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV 66 (82)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG
T ss_pred CCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh
Confidence 3444467899999999999999999999999887778899999999974
No 11
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=78.48 E-value=0.71 Score=28.44 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=39.4
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce--eeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI--LFIFLN 74 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~--VFlkhg 74 (80)
+..-|-...++.++++++++++.+..|-|.-.+|...+.||- |.+..|
T Consensus 162 ~~~kp~~~~~~~~~~~lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~ 211 (247)
T 3dv9_A 162 KYGKPNPEPYLMALKKGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTG 211 (247)
T ss_dssp SSCTTSSHHHHHHHHHHTCCGGGEEEEECSHHHHHHHHHTTSEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHcCCChhheEEEeCCHHHHHHHHHCCCeEEEEcCC
Confidence 445677788999999999999999999888888999999984 555554
No 12
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=77.34 E-value=0.5 Score=30.09 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=36.4
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
++..-|-...++.++++++++|+.+..|=|.-.+|...+.||--
T Consensus 161 ~~~~Kp~p~~~~~~~~~l~~~~~~~~~vGDs~~Di~~a~~aG~~ 204 (240)
T 2hi0_A 161 GIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEMD 204 (240)
T ss_dssp TSCCTTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHTTCE
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCe
Confidence 44566777889999999999999999998877788888888853
No 13
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=77.34 E-value=0.57 Score=29.31 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=34.9
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|=-..++.|+|+++++|+.+..|=|.-.+|-..+.||-
T Consensus 135 ~~Kp~p~~~~~~~~~lg~~p~~~~~vgDs~~Di~~a~~aG~ 175 (210)
T 2ah5_A 135 EAPHKADVIHQALQTHQLAPEQAIIIGDTKFDMLGARETGI 175 (210)
T ss_dssp SCCSHHHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCCChHHHHHHHHHcCCCcccEEEECCCHHHHHHHHHCCC
Confidence 44577789999999999999999999887788888888885
No 14
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=76.91 E-value=0.58 Score=30.39 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=35.8
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-..+...|+++++++|+.+..|-|.-.||-.++.||-
T Consensus 146 ~~~KP~p~~~~~a~~~lg~~p~e~l~VgDs~~di~aA~~aG~ 187 (243)
T 4g9b_A 146 KNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGM 187 (243)
T ss_dssp SSCTTSTHHHHHHHHHHTSCGGGEEEEESSHHHHHHHHHHTC
T ss_pred cCCCCcHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHcCC
Confidence 344577788999999999999999999888888888888884
No 15
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=76.80 E-value=2.5 Score=24.31 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=39.8
Q ss_pred EEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeee
Q 034866 23 VFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIF 72 (80)
Q Consensus 23 vlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlk 72 (80)
.+.|-..+||..+.+--||+.++++..--.+- ||-=|+|.+|....=|.
T Consensus 15 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l~me 63 (72)
T 1wm3_A 15 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQLEME 63 (72)
T ss_dssp EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-TTEECCTTCCTTTTTCC
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcceEEEEE-CCEEcCCCCCHHHcCCC
Confidence 45678899999999999999999997655544 79999999998764433
No 16
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=75.82 E-value=0.9 Score=29.30 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=38.1
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccce--eeeeeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~--VFlkhgf 75 (80)
.-|-...++.++++++++++.+..|-|. -.+|...+.||- |++..|+
T Consensus 182 ~KP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~i~v~~g~ 231 (264)
T 1yv9_A 182 GKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGF 231 (264)
T ss_dssp STTSHHHHHHHHHHHCSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSS
T ss_pred CCCCHHHHHHHHHHcCCCHHHEEEECCCcHHHHHHHHHcCCcEEEECCCC
Confidence 4577789999999999999999999888 689999888883 4554443
No 17
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=75.63 E-value=7.5 Score=24.87 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=46.0
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
..+++.||.- |-+ + ..+.|-..+||.-+.+--||+.++++...-.+- ||-=|++.+|....
T Consensus 29 ~~~I~IkV~~--~g~-~-i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F-dG~rl~~~~Tp~dl 89 (106)
T 2eke_C 29 ETHINLKVSD--GSS-E-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPEDL 89 (106)
T ss_dssp CSEEEEEEEC--SSC-E-EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCTTTT
T ss_pred CCeEEEEEec--CCc-E-EEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE-CCeEcCCCCCHHHc
Confidence 3566777664 322 2 346678899999999999999999998655544 89999999998654
No 18
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=75.21 E-value=12 Score=23.63 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=38.6
Q ss_pred CCCceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcc
Q 034866 2 TSRGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 2 ~~~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~T 49 (80)
++++.++.|+.+..| -++++||.+..|....+=..+-|+++...
T Consensus 2 ~~~~~vkvK~~~~gd----i~~~~v~~~i~~~~L~~kv~~~~~~~~~~ 45 (89)
T 1vd2_A 2 PLGSQVRVKAYYRGD----IMITHFEPSISFEGLCNEVRDMCSFDNEQ 45 (89)
T ss_dssp CCSSCEEEEEESSSC----EEEEEECTTCCHHHHHHHHHHHTTCCSSC
T ss_pred CCCCeEEEEEEeCCe----EEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 466789999999998 67999999999999999999999987544
No 19
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=75.11 E-value=12 Score=24.01 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=45.8
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
.+++.||.- .|-+ +. .+.|-..+||..+.+--||..++++...-.| =||-=|+|.+|....
T Consensus 25 ~~I~IkVk~-~~g~-~i-~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-FdG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 25 ALVAVKVVN-ADGA-EM-FFRIKSRTALKKLIDTYCKKQGISRNSVRFL-FDGTPIDETKTPEEL 85 (110)
T ss_dssp CCEEEEEEE-TTSC-CE-EEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-SSSCBCCSSSHHHHH
T ss_pred CeEEEEEEC-CCCC-EE-EEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCEEcCCCCCHHHc
Confidence 356666643 2333 33 5678899999999999999999999865554 489999999997654
No 20
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=75.01 E-value=0.76 Score=28.31 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=39.1
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce--ee-eeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI--LF-IFLNF 75 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~--VF-lkhgf 75 (80)
...-|=...++.|+++++++|+.+..|=|.-.+|-.++.||- |+ ..+|+
T Consensus 137 ~~~KP~p~~~~~a~~~lg~~p~e~l~VgDs~~Di~aA~~aG~~~i~~v~~g~ 188 (216)
T 3kbb_A 137 KNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSL 188 (216)
T ss_dssp SSCTTSTHHHHHHHHHHTCCGGGEEEEECSHHHHHHHHHTTCCCEEEECCSS
T ss_pred CCCcccHHHHHHHHHhhCCCccceEEEecCHHHHHHHHHcCCcEEEEecCCC
Confidence 334566778899999999999999999888888999999984 44 45554
No 21
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=74.88 E-value=10 Score=22.20 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=46.4
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
..+++.|+. +.|-+.+. .+.|-..+||..+.+--||+.++++..--.+ =||-=|+|.+|....=
T Consensus 5 ~~~i~ikV~-~~~g~~~i-~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~~l~~~~Tp~~l~ 68 (79)
T 3a4r_A 5 SQELRLRVQ-GKEKHQML-EISLSPDSPLKVLMSHYEEAMGLSGHKLSFF-FDGTKLSGKELPADLG 68 (79)
T ss_dssp CCCEEEEEE-CSSTTCEE-EEEECTTSCHHHHHHHHHHHHTCTTCCCEEE-ETTEECCSCCCHHHHT
T ss_pred CCEEEEEEE-eCCCCEEE-EEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCEEcCCCCCHHHcC
Confidence 345555554 23443233 3667899999999999999999998865544 4899999999976543
No 22
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=74.56 E-value=1.5 Score=27.68 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=37.2
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce--eeeeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI--LFIFLN 74 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~--VFlkhg 74 (80)
.-|-...++.++++++++++.+..|=|.- .+|-..+.||- |++..|
T Consensus 178 ~Kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~a~~aG~~~i~v~~g 226 (259)
T 2ho4_A 178 GKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTG 226 (259)
T ss_dssp STTSHHHHHHHGGGGTCCGGGEEEEESCTTTTHHHHHHTTCEEEEESST
T ss_pred cCCCHHHHHHHHHHcCCChHHEEEECCCcHHHHHHHHHCCCcEEEECCC
Confidence 45677789999999999999999998887 88888888883 444444
No 23
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=74.24 E-value=1.4 Score=26.04 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=12.5
Q ss_pred eEEecCCcccCcccc
Q 034866 51 AIITNDGVGINPQQS 65 (80)
Q Consensus 51 AiITndGiGINP~Qt 65 (80)
..|+|||.||+|.+.
T Consensus 74 i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 74 ITVSDDGTFKGEENS 88 (128)
T ss_dssp EEEEESSCCCSCSSC
T ss_pred EEEEECCcCcCcccC
Confidence 457999999999864
No 24
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=73.69 E-value=3.6 Score=26.72 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=53.3
Q ss_pred ceEEEEEEec--CC-CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeee
Q 034866 5 GKVSFKVTLT--SD-PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFL 73 (80)
Q Consensus 5 ~KVtFKItlt--sd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh 73 (80)
.+|-..|..+ || |.+-=+-..||.+..+..++.+--.+.++++..+.-+-.+++=.+++++-|++|=+|
T Consensus 27 ~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~ 98 (117)
T 1eo6_A 27 DRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKE 98 (117)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred CeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHh
Confidence 3444444444 33 455556778999999999999999999999999876777777778888999998766
No 25
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=73.60 E-value=0.87 Score=28.56 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=38.9
Q ss_pred eCCCCchhhhhhhhhhhhCCCC-cceeEEecCCcccCcccccce--eeeeee
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPP-QTSAIITNDGVGINPQQSAGI--LFIFLN 74 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~-~TsAiITndGiGINP~QtAG~--VFlkhg 74 (80)
++..-|=...++.+++++++++ +.+..|-|.-..|...+.||- |.+..|
T Consensus 164 ~~~~kp~~~~~~~~~~~lgi~~~~~~i~vGD~~~Di~~a~~aG~~~v~v~~g 215 (277)
T 3iru_A 164 VVRGRPFPDMALKVALELEVGHVNGCIKVDDTLPGIEEGLRAGMWTVGVSCS 215 (277)
T ss_dssp SSSCTTSSHHHHHHHHHHTCSCGGGEEEEESSHHHHHHHHHTTCEEEEECSS
T ss_pred cCCCCCCHHHHHHHHHHcCCCCCccEEEEcCCHHHHHHHHHCCCeEEEEecC
Confidence 3445677788999999999999 999899888778888888884 555555
No 26
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=73.58 E-value=0.81 Score=27.72 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=29.6
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
..|..+++. +++++++|+.+..|-|+- ..|...+.||-
T Consensus 156 ~~~~~~l~~-~~~lgi~~~~~~~vGD~~~~Di~~a~~aG~ 194 (240)
T 3smv_A 156 NNFTYMIDA-LAKAGIEKKDILHTAESLYHDHIPANDAGL 194 (240)
T ss_dssp HHHHHHHHH-HHHTTCCGGGEEEEESCTTTTHHHHHHHTC
T ss_pred HHHHHHHHH-HHhcCCCchhEEEECCCchhhhHHHHHcCC
Confidence 344445555 999999999998888884 78888888885
No 27
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=73.25 E-value=2.6 Score=28.34 Aligned_cols=66 Identities=14% Similarity=0.259 Sum_probs=53.5
Q ss_pred CC--CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE-ecCCcccCcccccceeeeee----eeeeeeC
Q 034866 15 SD--PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII-TNDGVGINPQQSAGILFIFL----NFVSFQY 80 (80)
Q Consensus 15 sd--pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI-TndGiGINP~QtAG~VFlkh----gf~~~~~ 80 (80)
|| |.+-=+-.-||++..+..++.+--.+.++++..+.-+ -.+..=-+++++-|++|=+| ||.-..|
T Consensus 46 s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 118 (130)
T 2zjd_A 46 EKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVY 118 (130)
T ss_dssp CCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred CCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEE
Confidence 55 6777788899999999999999999999999998766 66666668889999998776 5654443
No 28
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=73.05 E-value=1.7 Score=26.39 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~ 68 (80)
+..-|=...++.+++++++++..+..|-|. ...|...+.||-
T Consensus 159 ~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~a~~aG~ 201 (240)
T 3qnm_A 159 GVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGVGM 201 (240)
T ss_dssp TCCTTSHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHcCCCcccEEEECCCchHhHHHHHHcCC
Confidence 345567788999999999999999988887 588888888885
No 29
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=72.98 E-value=7.7 Score=23.58 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=45.7
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
.+++.|+. +.|-+ +. .+.|-..+||..+.+--||+.++++..-- ..=||-=|+|.+|....=|
T Consensus 16 ~~i~ikV~-~~~g~-~i-~~~v~~~t~l~kl~~~y~~~~gi~~~~~r-f~fdG~~l~~~~Tp~dl~m 78 (93)
T 2d07_B 16 DHINLKVA-GQDGS-VV-QFKIKRHTPLSKLMKAYCERQGLSMRQIR-FRFDGQPINETDTPAQLEM 78 (93)
T ss_dssp CEEEEEEE-CTTSC-EE-EEEEETTSCHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTCCTTTTTC
T ss_pred CeEEEEEE-CCCCC-EE-EEEEccCCHHHHHHHHHHHHhCCCccceE-EEECCEEcCCCCCHHHcCC
Confidence 34445544 22332 33 47788999999999999999999987544 4557999999999876433
No 30
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=72.10 E-value=2.7 Score=25.51 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=37.4
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
+...|=...++.++++++++++.+..|-|.-..|...+.||--+
T Consensus 138 ~~~k~k~~~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~ 181 (217)
T 3m1y_A 138 MFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKI 181 (217)
T ss_dssp CSTTHHHHHHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEE
T ss_pred CCCCChHHHHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeE
Confidence 34567789999999999999999999998888888888888644
No 31
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}
Probab=72.04 E-value=1.4 Score=27.56 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=36.3
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
++...|=...++.++++++++++.+..|=|.- .+|.-.+.||-
T Consensus 186 ~~~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~a~~aG~ 229 (271)
T 2x4d_A 186 EVVGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGM 229 (271)
T ss_dssp EEESTTCHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTC
T ss_pred eeccCCCHHHHHHHHHHhCCCcceEEEECCCcHHHHHHHHHCCC
Confidence 45567888899999999999999999988876 78888888885
No 32
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=71.82 E-value=1 Score=27.76 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=35.1
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
++..-|=...++.++++++++++.+..|-|.-.+|...+.||-
T Consensus 156 ~~~~kp~~~~~~~~~~~lg~~~~~~i~vGD~~~Di~~a~~aG~ 198 (237)
T 4ex6_A 156 VERGKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAAGM 198 (237)
T ss_dssp SSSCTTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCC
Confidence 3445667788999999999999999998877777777777775
No 33
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=71.11 E-value=1.8 Score=26.13 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCccccccee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGIL 69 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~V 69 (80)
...-|-...++.++++++++++.+..|-|.- -+|...+.||--
T Consensus 155 ~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~nDi~~a~~aG~~ 198 (235)
T 2om6_A 155 LSYKPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMW 198 (235)
T ss_dssp TCCTTCHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHTTSE
T ss_pred CCCCCCHHHHHHHHHHcCCCccceEEECCChHHHHHHHHHCCCE
Confidence 3445667888999999999999988887776 688888888853
No 34
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.84 E-value=10 Score=23.86 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=46.8
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIF 72 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlk 72 (80)
.+++.||.- .|-+ +. .+.|-..+||..+.+--||+.++++..--.|- ||-=|+|.+|....=|.
T Consensus 23 ~~I~IkVk~-~~g~-~i-~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F-dG~~l~~~~Tp~dl~me 86 (104)
T 1wz0_A 23 DHINLKVAG-QDGS-VV-QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQLEME 86 (104)
T ss_dssp CCEEEEEEC-SSSC-EE-EEEECTTSCHHHHHHHHHHHHTCCTTTSCEES-SSSBCCTTSCTTTTTCC
T ss_pred CeEEEEEEC-CCCC-EE-EEEEcCCChHHHHHHHHHHHhCCCcceEEEEE-CCEEcCCCCCHHHcCCC
Confidence 355555542 2332 32 57789999999999999999999998655554 79999999998765443
No 35
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=70.47 E-value=2.7 Score=25.54 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
+..-|-...++.+++++++++..+..|-|.- ..|...+.||-
T Consensus 152 ~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~ 194 (234)
T 3u26_A 152 GFFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGM 194 (234)
T ss_dssp TBCTTSHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHTTTC
T ss_pred CCCCcCHHHHHHHHHHcCCCchhEEEEcCCcHHHHHHHHHcCC
Confidence 3455777889999999999999998888776 78888898885
No 36
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=70.38 E-value=1.6 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=35.0
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecC-CcccCccccccee
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGIL 69 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~V 69 (80)
-|-...++.++++++++++.+..|-|. -.+|..++.+|--
T Consensus 97 KP~p~~~~~~~~~~~~~~~~~l~VGD~~~~Di~~A~~aG~~ 137 (189)
T 3ib6_A 97 KPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIH 137 (189)
T ss_dssp TTSHHHHHHHHHHHTCCGGGEEEEESBTTTTHHHHHHTTCE
T ss_pred CcCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHCCCe
Confidence 578899999999999999999999888 7889888888843
No 37
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=70.37 E-value=1.1 Score=29.16 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=35.1
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-......|+++++++|+.+..|=|.-.+|..++.||-
T Consensus 167 ~~~KP~p~~~~~a~~~lg~~p~e~l~VGDs~~Di~aA~~aG~ 208 (250)
T 4gib_A 167 KNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANM 208 (250)
T ss_dssp CSCTTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHTTC
T ss_pred CCCCCcHHHHHHHHHHhCCChHHeEEECCCHHHHHHHHHcCC
Confidence 345577788899999999999999999877778888888885
No 38
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=69.82 E-value=1.7 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=9.6
Q ss_pred eEEecCCcccCcccc
Q 034866 51 AIITNDGVGINPQQS 65 (80)
Q Consensus 51 AiITndGiGINP~Qt 65 (80)
..|+|+|.||+|.+-
T Consensus 164 i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 164 ITVSDDGTFKGEENS 178 (218)
T ss_dssp EEEEESSCCCC----
T ss_pred EEEEECCcCCCCCCC
Confidence 457999999999864
No 39
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=69.62 E-value=1 Score=27.46 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=39.2
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce--eeeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~--VFlkhgf 75 (80)
...-|-...++.++++++++++.+..|-|.-.+|-..+.||- |++..|+
T Consensus 98 ~~~KP~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~ 148 (179)
T 3l8h_A 98 ACRKPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGN 148 (179)
T ss_dssp SSSTTSSHHHHHHHHHHTCCCTTCEEEESSHHHHHHHHHHTCEEEEESTTT
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCcEEEECCCC
Confidence 344577888999999999999999999888888888888885 4544443
No 40
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=69.59 E-value=6.5 Score=27.40 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=38.4
Q ss_pred EEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEec
Q 034866 7 VSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITN 55 (80)
Q Consensus 7 VtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITn 55 (80)
+.|++...+|++.++ .+.+-...-+..+++.+++.|++++.+..=+++
T Consensus 140 ~~l~l~~~~~~~~~~-~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~ 187 (231)
T 3jyu_A 140 LELKLCENSDPTNVL-SCHFSKADTIATIEKEMRKLFNIPAERETRLWN 187 (231)
T ss_dssp EEEEEEETTEEEEEE-EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred ceEEEEecCCCCceE-EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 467888888887764 345577888999999999999999987666665
No 41
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=69.52 E-value=1.7 Score=28.38 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=38.9
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccc--eeeeeeee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAG--ILFIFLNF 75 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG--~VFlkhgf 75 (80)
.-|-...++.++++++++++.+..|-|. ..-|...+.|| .|++..|+
T Consensus 181 ~Kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~g~ 230 (264)
T 3epr_A 181 GKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGF 230 (264)
T ss_dssp STTSHHHHHHHHHHHTSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSS
T ss_pred CCCCHHHHHHHHHHhCcCcccEEEECCCcHHHHHHHHHCCCeEEEECCCC
Confidence 4566677999999999999999999888 78888888888 47766664
No 42
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14
Probab=68.55 E-value=1.8 Score=26.27 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=35.0
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~ 68 (80)
+...|=...++.++++++++++.+..|=|. .-.|.-.+.||-
T Consensus 173 ~~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~~~~aG~ 215 (250)
T 2c4n_A 173 YVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGL 215 (250)
T ss_dssp ECSTTSTHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHHcCCCcceEEEECCCchhHHHHHHHcCC
Confidence 456677788999999999999999998887 688888888874
No 43
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=68.36 E-value=1.8 Score=26.39 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=34.7
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+..-|=...++.++++++++++.+..|-|.-.+|-..+.||-
T Consensus 139 ~~~kp~~~~~~~~~~~lgi~~~~~i~iGD~~~Di~~a~~aG~ 180 (226)
T 3mc1_A 139 GKLSTKEDVIRYAMESLNIKSDDAIMIGDREYDVIGALKNNL 180 (226)
T ss_dssp SSSCSHHHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHhCcCcccEEEECCCHHHHHHHHHCCC
Confidence 445678889999999999999998888877777777777774
No 44
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=68.31 E-value=7.4 Score=26.79 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=38.0
Q ss_pred EEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEec
Q 034866 7 VSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITN 55 (80)
Q Consensus 7 VtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITn 55 (80)
+.|++...+|++.++ .+++-...-+..+++.+++.|++++.+..=+++
T Consensus 128 ~~l~l~~~~~~~~~~-~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~ 175 (217)
T 4a3p_A 128 TELKLCENGNMNNVV-TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWN 175 (217)
T ss_dssp EEEEEEETTEEEEEE-EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred cEEEEEecCCCCcce-EEEEcccchHHHHHHHHHHHhCCCCCCceEEEE
Confidence 467888888887654 456788888999999999999999986555554
No 45
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=68.04 E-value=2.3 Score=25.92 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=36.2
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
++..-|-...++.++++++++++.+..|-|+- ..|...+.||-
T Consensus 151 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~ 194 (230)
T 3vay_A 151 LGIGKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGM 194 (230)
T ss_dssp HTCCTTSHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTC
T ss_pred cCCCCcCHHHHHHHHHHhCCCchheEEEeCChHHHHHHHHHCCC
Confidence 44556777889999999999999999998886 78888888885
No 46
>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}
Probab=67.43 E-value=1.3 Score=27.10 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=34.5
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+++.-|=...++.++++++++++.+..|-|.-..|...+.||-
T Consensus 165 ~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~Di~~a~~aG~ 207 (254)
T 3umg_A 165 NRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHATGL 207 (254)
T ss_dssp HTCCTTSHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHcCCChHHEEEEeCChHhHHHHHHCCC
Confidence 3556677789999999999999999998877666777777763
No 47
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=66.80 E-value=1.9 Score=26.94 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=38.1
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce--eeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI--LFIFLN 74 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~--VFlkhg 74 (80)
+..-|=...++.++++++++++.+..|-|.-.+|...+.||- |.+..|
T Consensus 163 ~~~kp~~~~~~~~~~~lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~ 212 (243)
T 3qxg_A 163 KYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTG 212 (243)
T ss_dssp SSCTTSSHHHHHHHHHTTCCGGGEEEEECSHHHHHHHHHTTCEEEEECCS
T ss_pred CCCCCChHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCEEEEEeCC
Confidence 445566678899999999999999999888888888888884 444443
No 48
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=66.04 E-value=1.5 Score=28.00 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=35.1
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
++..-|-...++.++++++++++.+..|-|....|-..+.||-
T Consensus 143 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~ 185 (253)
T 1qq5_A 143 KRVFKPHPDSYALVEEVLGVTPAEVLFVSSNGFDVGGAKNFGF 185 (253)
T ss_dssp GTCCTTSHHHHHHHHHHHCCCGGGEEEEESCHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHHHHHcCCCHHHEEEEeCChhhHHHHHHCCC
Confidence 3445677788999999999999999999877777878888875
No 49
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=66.03 E-value=1.5 Score=27.07 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=33.5
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-...++.++++++++++.+..|-|....|...+.||-
T Consensus 148 ~~~Kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~ 189 (232)
T 1zrn_A 148 QVYKPDNRVYELAEQALGLDRSAILFVASNAWDATGARYFGF 189 (232)
T ss_dssp TCCTTSHHHHHHHHHHHTSCGGGEEEEESCHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHcCCCcccEEEEeCCHHHHHHHHHcCC
Confidence 345577788999999999999999988777666777777764
No 50
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Probab=65.97 E-value=1.5 Score=30.08 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=34.7
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|-......|+++++++|+.+..|-|.-.||..++.||-
T Consensus 187 KP~p~~~~~a~~~lg~~p~~~l~vgDs~~di~aA~~aG~ 225 (253)
T 2g80_A 187 KTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGI 225 (253)
T ss_dssp TTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCC
Confidence 567788899999999999999999998889999988884
No 51
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=65.83 E-value=2.9 Score=26.17 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=37.9
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce--eeeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~--VFlkhgf 75 (80)
+..-|-...++.+++++++++..+..|-|.- .+|...+.||- +.+..|+
T Consensus 147 ~~~Kp~~~~~~~~~~~~g~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~g~ 198 (241)
T 2hoq_A 147 GVKKPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGK 198 (241)
T ss_dssp TCCTTCHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECCSC
T ss_pred CCCCCCHHHHHHHHHHcCCCcccEEEECCCchHhHHHHHHCCCEEEEECCCC
Confidence 4455777889999999999999988887776 68988888886 3444443
No 52
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=65.36 E-value=21 Score=21.80 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=44.6
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
.+++.||.- .|-+ +. .+.|-..+|+..+.+--||+.++++..--. .=||-=|+|.+|....
T Consensus 6 ~~i~ikVk~-~~g~-~i-~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf-~FdG~~l~~~~Tp~dl 66 (94)
T 2io1_B 6 DHINLKVAG-QDGS-VV-QFKIKRHTPLSKLMKAYCERQGLSMRQIRF-RFDGQPINETDTPAQL 66 (94)
T ss_dssp CEEEEEEEC-TTSC-EE-EEEEETTSCTHHHHHHHHHHHTCCGGGEEE-EETTEECCTTCCTTTT
T ss_pred CeEEEEEEC-CCCC-EE-EEEECCCCHHHHHHHHHHHHhCCCcccEEE-EECCEEcCCCCCHHHc
Confidence 455555542 2333 33 456789999999999999999999976555 4579999999997653
No 53
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=65.20 E-value=2.6 Score=27.72 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~ 68 (80)
+..-|=...++.|+++++++|+.+..|-|+ -.+|-..+.||-
T Consensus 173 ~~~KP~p~~~~~~~~~~~~~~~~~~~vGDs~~~Di~~A~~aG~ 215 (260)
T 2gfh_A 173 KEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGL 215 (260)
T ss_dssp SSCTTCHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHcCCChhhEEEECCCchhhHHHHHHCCC
Confidence 344577788999999999999999999886 689999999985
No 54
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=65.00 E-value=1.5 Score=26.70 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=34.1
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+..-|-...++.++++++++++.+..|-|....|...+.||-
T Consensus 149 ~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~ 190 (230)
T 3um9_A 149 RLFKPHQKVYELAMDTLHLGESEILFVSCNSWDATGAKYFGY 190 (230)
T ss_dssp TCCTTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHTC
T ss_pred ccCCCChHHHHHHHHHhCCCcccEEEEeCCHHHHHHHHHCCC
Confidence 445677888999999999999999998777667777777774
No 55
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=64.68 E-value=1.8 Score=25.27 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=32.3
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|-...++.+++++++++..+..|-|.--.|...+.||-
T Consensus 140 Kp~~~~~~~~~~~~~i~~~~~~~iGD~~nDi~~~~~aG~ 178 (207)
T 2go7_A 140 KPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGI 178 (207)
T ss_dssp TTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHhCCCcccEEEECCCHHHHHHHHHCCC
Confidence 355678889999999999999999887777777777775
No 56
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=64.67 E-value=7 Score=25.68 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=27.9
Q ss_pred eeEEeeCCCCchhhhhhhhhhhhCCCCcceeE
Q 034866 21 FKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAI 52 (80)
Q Consensus 21 ~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAi 52 (80)
++.+.|+..++|..+.+..|++||+|+...-+
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~Rl 88 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRL 88 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEE
Confidence 47889999999999999999999999876543
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=63.95 E-value=3.5 Score=23.58 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=12.7
Q ss_pred eeEEecCCcccCcccc
Q 034866 50 SAIITNDGVGINPQQS 65 (80)
Q Consensus 50 sAiITndGiGINP~Qt 65 (80)
...|+|+|.||.|.++
T Consensus 71 ~i~v~D~G~gi~~~~~ 86 (124)
T 3zxq_A 71 RVEVVDDGVGISGDIT 86 (124)
T ss_dssp EEEEEECCCSSCGGGS
T ss_pred EEEEEECCCCCCcccc
Confidence 3567999999999763
No 58
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=63.53 E-value=1.6 Score=27.20 Aligned_cols=42 Identities=14% Similarity=0.291 Sum_probs=33.6
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+..-|-...++.++++++++++.+..|-|....|...+.||-
T Consensus 158 ~~~Kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~ 199 (240)
T 2no4_A 158 KIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGF 199 (240)
T ss_dssp TCCTTSHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHcCCCcccEEEEeCCHHHHHHHHHCCC
Confidence 345577788899999999999999888777666777777774
No 59
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=63.29 E-value=3.3 Score=23.79 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.4
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
...|+|+|.||.+.+
T Consensus 75 ~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 75 CIEVTDNGRGMPDEF 89 (129)
T ss_dssp EEEEEECCCCCTTTT
T ss_pred EEEEecCCCCCCccc
Confidence 356799999999876
No 60
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=63.10 E-value=2.9 Score=26.92 Aligned_cols=49 Identities=12% Similarity=0.309 Sum_probs=40.2
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccce--eeeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~--VFlkhgf 75 (80)
...-|-...++.+++++++++..+..|-|. ...|-..+.||- +++..|.
T Consensus 184 ~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~~~~~g~~~~~v~~g~ 235 (268)
T 3qgm_A 184 VVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGV 235 (268)
T ss_dssp ECSTTSHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHHTCEEEEESSSS
T ss_pred ecCCCCHHHHHHHHHHhCCCchhEEEECCCchHHHHHHHHCCCcEEEECCCC
Confidence 345677788999999999999999998888 688988999984 6766664
No 61
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=63.03 E-value=8.2 Score=30.21 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCCCCceeEEeeCCCCchhhhhhhhhhh-----hCCCCcc-e-eEEecCCcccC
Q 034866 15 SDPKLPFKVFSVPEAAPFTVVLKFAAEE-----FKVPPQT-S-AIITNDGVGIN 61 (80)
Q Consensus 15 sdpklP~kvlsVPE~aPFtAVlkfaAEe-----Fkv~~~T-s-AiITndGiGIN 61 (80)
+.+...| -++||+...|--|||=|+|. |.+.... . -|-+-+|+==|
T Consensus 309 ~~~~~~~-~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~ 361 (399)
T 2pmv_A 309 LLFNETI-NVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAEN 361 (399)
T ss_dssp CCEECCE-EEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCC
T ss_pred CCCCcce-EEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccC
Confidence 4556666 79999999999999999998 5543211 2 45577887544
No 62
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=62.96 E-value=1.3 Score=27.30 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=30.4
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|=...++.++++++++++.+..|-|.-.+|...+.||-
T Consensus 144 ~~Kp~~~~~~~~~~~lgi~~~~~i~vGDs~~Di~~a~~aG~ 184 (233)
T 3nas_A 144 KGKPDPDIFLTAAAMLDVSPADCAAIEDAEAGISAIKSAGM 184 (233)
T ss_dssp -----CCHHHHHHHHHTSCGGGEEEEECSHHHHHHHHHTTC
T ss_pred CCCCChHHHHHHHHHcCCCHHHEEEEeCCHHHHHHHHHcCC
Confidence 34455678899999999999999999777777777777774
No 63
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=62.89 E-value=28 Score=22.82 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=44.7
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
.+++.||.- .|-+ . -.+.|-..+||.-+.+.-||+.++++..--.+ =||-=|++.+|....
T Consensus 39 ~~I~LKV~~-qdg~-e-v~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl-FDG~rI~~~~TP~dL 99 (115)
T 3kyd_D 39 EYIKLKVIG-QDSS-E-IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQRIADNHTPKEL 99 (115)
T ss_dssp CEEEEEEEC-TTSC-E-EEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE-ETTEECCTTCCTTTT
T ss_pred CeEEEEEEc-CCCC-E-EEEEEccCChHHHHHHHHHHHhCCChhhEEEE-ECCeECCCCCCHHHc
Confidence 355555532 2333 2 34667889999999999999999988765554 479999999998754
No 64
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=62.80 E-value=1.9 Score=25.44 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-...++.+++++++++..+..|-|.-..|...+.||-
T Consensus 142 ~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~ 183 (214)
T 3e58_A 142 KESKPNPEIYLTALKQLNVQASRALIIEDSEKGIAAGVAADV 183 (214)
T ss_dssp SSCTTSSHHHHHHHHHHTCCGGGEEEEECSHHHHHHHHHTTC
T ss_pred cCCCCChHHHHHHHHHcCCChHHeEEEeccHhhHHHHHHCCC
Confidence 345566778899999999999999999888778888888884
No 65
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=62.63 E-value=2.6 Score=25.87 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=6.8
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 148 i~V~D~G~Gi~~~~ 161 (222)
T 3jz3_A 148 FIVRDNGPGVTPEA 161 (222)
T ss_dssp EEEECSCC------
T ss_pred EEEEECCCCCCHHH
Confidence 56799999999875
No 66
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=62.22 E-value=2.1 Score=25.33 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=34.2
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+..-|-...++.+++++++++..+..|-|.-..|...+.+|-
T Consensus 137 ~~~kp~~~~~~~~~~~~~~~~~~~i~iGD~~~Di~~a~~aG~ 178 (216)
T 2pib_A 137 KNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGI 178 (216)
T ss_dssp SSCTTSTHHHHHHHHHHTCCGGGEEEEECSHHHHHHHHHTTC
T ss_pred CCCCcCcHHHHHHHHHcCCCCceEEEEeCcHHHHHHHHHcCC
Confidence 445677788999999999999999998777677777777775
No 67
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=61.97 E-value=2.2 Score=25.47 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=32.0
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.-|-...++.+++++++++..+..|-|.--.|...+.||-
T Consensus 149 ~kp~~~~~~~~~~~~~i~~~~~i~iGD~~nDi~~a~~aG~ 188 (226)
T 1te2_A 149 SKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARM 188 (226)
T ss_dssp CTTSTHHHHHHHHHHTSCGGGEEEEESSHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCC
Confidence 3455678999999999999999888777677777777774
No 68
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=61.55 E-value=2 Score=26.48 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=33.8
Q ss_pred CCCCchhhhhhhhhhhhCCCCc-ceeEEecCCcccCcccccc
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQ-TSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~-TsAiITndGiGINP~QtAG 67 (80)
+..-|=...++.+++++++++. .+..|-|.-..|-..+.||
T Consensus 156 ~~~Kp~~~~~~~~~~~lgi~~~~~~v~vGD~~~Di~~a~~aG 197 (231)
T 3kzx_A 156 GTIKPSPEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEAG 197 (231)
T ss_dssp SCCTTSSHHHHHHHHHHTCCCSTTEEEEESSHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHcCCCcccCEEEEcCCHHHHHHHHHCC
Confidence 4455667788999999999998 7888888778888888888
No 69
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=61.45 E-value=2.7 Score=25.61 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=29.8
Q ss_pred EeeCCCCc---hhhhhhhhhhhhCCCCcceeEEecCC--------cccCcccccceeeeee
Q 034866 24 FSVPEAAP---FTVVLKFAAEEFKVPPQTSAIITNDG--------VGINPQQSAGILFIFL 73 (80)
Q Consensus 24 lsVPE~aP---FtAVlkfaAEeFkv~~~TsAiITndG--------iGINP~QtAG~VFlkh 73 (80)
++|||++| =+.|++..|.. +.+..-+--|...+ .-|||. .|.++++-
T Consensus 11 ~~V~En~~~~~~~~v~~v~Ad~-g~N~~i~Ysi~~~~~~~~~~~~F~Id~~--tG~I~~~~ 68 (105)
T 2omz_B 11 ISCPENEKGPFPKNLVQIKSNK-DKEGKVFYSITGQGADTPPVGVFIIERE--TGWLKVTE 68 (105)
T ss_dssp CCEESSCCSSSSEEEEECEEGG-GGSSCCEEEEEEBTTTBSSTTSEEECTT--TCEEEECS
T ss_pred EEEeCCCCCCCCcEEEEEECCC-CCCCeEEEEEeCCCCCCCccCEEEEeCC--CCEEEECc
Confidence 68999998 44677777744 55555444444433 557764 58887763
No 70
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=61.18 E-value=16 Score=26.99 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=46.8
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
..+++.||.. |-+ --.+.|-..+||.-+.+.-||+.++++..--.+- ||-=|++.+|....
T Consensus 55 ~e~InLKVk~--dG~--eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF-DGqRI~~ddTPeDL 115 (207)
T 3tix_A 55 ETHINLKVSD--GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY-DGIEIQADQTPEDL 115 (207)
T ss_dssp CCEEEEEEEC--SSC--EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE-TTEECCSSCCTTTT
T ss_pred CCcEEEEEec--CCC--EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE-CCeecCCCCCHHHc
Confidence 4578888853 322 2456677899999999999999999996655544 89999999997643
No 71
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=61.16 E-value=12 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=37.3
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhh--hCCCCcc----eeEEecCCcccC
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEE--FKVPPQT----SAIITNDGVGIN 61 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEe--Fkv~~~T----sAiITndGiGIN 61 (80)
+.|+..+++.++..-.-+-++||+.+.|--|||=|+|. |+..... --|-+-+|+==|
T Consensus 315 ~~I~VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~~~ 377 (414)
T 2bb6_A 315 KFIDVLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRKAG 377 (414)
T ss_dssp CEEEEEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEECC
T ss_pred ceEEEEEEEeeCCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCccC
Confidence 44555555556555555679999999999999999996 3332222 245567776433
No 72
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=61.03 E-value=3.6 Score=26.53 Aligned_cols=48 Identities=13% Similarity=0.269 Sum_probs=37.7
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccce--eeeeeee
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~--VFlkhgf 75 (80)
..-|-...++.++++++++++.+..|-|. ..-|...+.||- ++...|+
T Consensus 181 ~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~~~~aG~~~~~v~~g~ 231 (266)
T 3pdw_A 181 IGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGV 231 (266)
T ss_dssp CSTTSSHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHHTCEEEEECCC-
T ss_pred cCCCCHHHHHHHHHHcCCChhhEEEECCCcHHHHHHHHHCCCeEEEECCCC
Confidence 34455678999999999999999888888 788888888884 6666554
No 73
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=60.20 E-value=3.9 Score=24.78 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=35.1
Q ss_pred CCCCchhhhhhhhhhhhC-CCCcceeEEecCC-cccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFK-VPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFk-v~~~TsAiITndG-iGINP~QtAG~ 68 (80)
+..-|-...++.++++++ +++..+..|-|.- ..|...+.||-
T Consensus 155 ~~~kp~~~~~~~~~~~~g~~~~~~~i~vGD~~~~Di~~a~~aG~ 198 (238)
T 3ed5_A 155 GFQKPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGL 198 (238)
T ss_dssp TSCTTCHHHHHHHHHTSTTCCGGGEEEEESCTTTTHHHHHHTTC
T ss_pred CCCCCChHHHHHHHHHcCCCChhHeEEECCCcHHHHHHHHHCCC
Confidence 445677788999999999 9999998888776 78888888884
No 74
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=60.15 E-value=3.6 Score=26.46 Aligned_cols=14 Identities=29% Similarity=0.722 Sum_probs=11.7
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||+|.+
T Consensus 176 i~V~D~G~Gi~~~~ 189 (258)
T 2c2a_A 176 IIVEDNGIGIPDHA 189 (258)
T ss_dssp EEEEECSSCCCGGG
T ss_pred EEEEecCCCCCHHH
Confidence 45799999999875
No 75
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Probab=60.00 E-value=2 Score=26.81 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=34.7
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-...++.++++++++|..+..|-|.-..|...+.||-
T Consensus 170 ~~~KP~~~~~~~~~~~~g~~~~~~~~vGD~~~Di~~a~~aG~ 211 (229)
T 4dcc_A 170 KMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGI 211 (229)
T ss_dssp TCCTTCHHHHHHHHHHHTCCGGGEEEECSCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHeEEECCCHHHHHHHHHcCC
Confidence 345577788999999999999999999887778888888873
No 76
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=59.97 E-value=4.6 Score=26.26 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=35.8
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+|...|=...+++++++++++++.+..|=|+.-+|.-.+.||.
T Consensus 182 ~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~ 224 (261)
T 2rbk_A 182 TAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAI 224 (261)
T ss_dssp ESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSE
T ss_pred cCCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCc
Confidence 6788888899999999999999999999887766666666663
No 77
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.91 E-value=24 Score=20.80 Aligned_cols=51 Identities=4% Similarity=-0.090 Sum_probs=39.2
Q ss_pred CCceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEec
Q 034866 3 SRGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITN 55 (80)
Q Consensus 3 ~~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITn 55 (80)
.|+.|+++|+-...+ +++. +.|+.+..-..+-+--++..++|+..--++-.
T Consensus 4 ~~~~v~l~I~~~~~~-~~~~-~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 4 GSSGVMVFISSSLNS-FRSE-KRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CCCCEEEEEEETTSS-SCEE-EEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred CCcEEEEEEEECCCC-eeEE-EEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 356788888865544 4554 58999999999999999999999987666644
No 78
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=59.87 E-value=1.9 Score=28.83 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=35.5
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.-|-...++.|+++++++|+.+..|-|.-.+|-.++.||-
T Consensus 186 ~KP~p~~~~~~~~~lg~~p~~~l~VgDs~~di~aA~~aG~ 225 (261)
T 1yns_A 186 HKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADV 225 (261)
T ss_dssp CTTCHHHHHHHHHHHTSCGGGEEEEESCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhCcCcccEEEEcCCHHHHHHHHHCCC
Confidence 4577788999999999999999999999889999988884
No 79
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=59.56 E-value=8.1 Score=25.39 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=45.1
Q ss_pred CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeee
Q 034866 17 PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFL 73 (80)
Q Consensus 17 pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh 73 (80)
|.|--+..-||.+..+..++.+--...++++..+.-+--++.=..++++-|++|=+|
T Consensus 44 P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~ 100 (118)
T 3rui_B 44 PEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEH 100 (118)
T ss_dssp CCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHH
T ss_pred CccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHc
Confidence 445567788999999999999999999999988755533345567788889988766
No 80
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=59.20 E-value=2.5 Score=25.59 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=34.0
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|=...++.++++++++++.+..|-|.-..|...+.+|-
T Consensus 145 ~~kp~~~~~~~~~~~l~~~~~~~i~iGD~~~Di~~a~~aG~ 185 (233)
T 3s6j_A 145 YGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDMLAARRCKA 185 (233)
T ss_dssp CCTTSTHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHTTC
T ss_pred CCCCChHHHHHHHHHhCCCHHHEEEEeCCHHhHHHHHHCCC
Confidence 34455678899999999999999999888788888888884
No 81
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=58.71 E-value=2.3 Score=26.31 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.7
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
++..-|=...++.++++++++++.+..|-|.-..|...+.||-
T Consensus 169 ~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~Di~~a~~aG~ 211 (254)
T 3umc_A 169 FGHYKPDPQVYLGACRLLDLPPQEVMLCAAHNYDLKAARALGL 211 (254)
T ss_dssp HTCCTTSHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHHHHcCCChHHEEEEcCchHhHHHHHHCCC
Confidence 3556677888999999999999999888776666666666664
No 82
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=58.69 E-value=2 Score=27.63 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=35.7
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecC-CcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG~ 68 (80)
++...|-...++.++++++++++.+..|=|. ...|-..+.||-
T Consensus 191 ~~~~kpk~~~~~~~~~~lgi~~~e~i~iGD~~~nDi~~a~~aG~ 234 (271)
T 1vjr_A 191 LIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGI 234 (271)
T ss_dssp EECSTTSTHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHhCCCCceEEEECCCcHHHHHHHHHcCC
Confidence 5566788889999999999999998888777 477888888774
No 83
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=57.92 E-value=8 Score=24.98 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=25.0
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcce
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
..+.|..++...-||+=||+.||++++.-
T Consensus 22 ~~VKvtp~t~L~~VL~eaC~K~gl~~~~~ 50 (90)
T 2al3_A 22 HTVKVTPSTVLLQVLEDTCRRQDFNPSEY 50 (90)
T ss_dssp EEECCCTTSBHHHHHHHHHHHTTCCGGGC
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCChhhC
Confidence 45677999999999999999999987643
No 84
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=57.84 E-value=2.8 Score=26.33 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=33.2
Q ss_pred CCCchhhhhhhhhhhhCCCC--cceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPP--QTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~--~TsAiITndGiGINP~QtAG~ 68 (80)
..-|-...++.+++++++++ +.+..|-|.-..|...+.||-
T Consensus 169 ~~Kp~~~~~~~~~~~lgi~~~~~~~i~iGD~~~Di~~a~~aG~ 211 (250)
T 3l5k_A 169 HGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGM 211 (250)
T ss_dssp SCTTSTHHHHHHHHTSSSCCCGGGEEEEESSHHHHHHHHHTTC
T ss_pred CCCCChHHHHHHHHHcCCCCCcceEEEEeCCHHHHHHHHHcCC
Confidence 34566778999999999988 998888887777777777774
No 85
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=57.57 E-value=23 Score=25.09 Aligned_cols=60 Identities=15% Similarity=0.234 Sum_probs=46.4
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..+++.||.. |-+ -..+.|-..+||..+.+.-||+.++++..--.+- ||-=|++.||...
T Consensus 27 ~~~I~LkV~~--~g~--~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F-dG~rI~~~~TP~d 86 (200)
T 3pge_A 27 ETHINLKVSD--GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY-DGIRIQADQTPED 86 (200)
T ss_dssp CCCEEEEEEC--SSC--EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE-TTEECCTTCCTTT
T ss_pred CCeEEEEEec--CCC--EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE-CCEEcCCCCCHHH
Confidence 4567788853 322 3566778999999999999999999987655554 7999999999754
No 86
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=57.53 E-value=2.7 Score=28.70 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=13.1
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
...|+|||+||++.+
T Consensus 74 ~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 74 VLEIRDSGIGMTKAE 88 (220)
T ss_dssp EEEEEECSCCCCHHH
T ss_pred EEEEEEcCCCCCHHH
Confidence 468899999999877
No 87
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=57.30 E-value=3.5 Score=26.32 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=39.4
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce---eeeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI---LFIFLNF 75 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~---VFlkhgf 75 (80)
...-|-...++.++++++++++.+..|-|.-..|-..+.+|- +++..|+
T Consensus 134 ~~~KP~~~~~~~~~~~~~i~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~ 185 (218)
T 2o2x_A 134 PMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEA 185 (218)
T ss_dssp TTSTTSCHHHHHHHHHHTCCGGGCEEEESSHHHHHHHHHTTCSEEEEETCCC
T ss_pred ccCCCCHHHHHHHHHHcCCCHHHEEEEeCCHHHHHHHHHCCCCEeEEEecCC
Confidence 344577889999999999999999999888788888888884 5665554
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=57.00 E-value=4.8 Score=24.92 Aligned_cols=14 Identities=36% Similarity=0.785 Sum_probs=11.8
Q ss_pred CCCceeEEeeCCCC
Q 034866 17 PKLPFKVFSVPEAA 30 (80)
Q Consensus 17 pklP~kvlsVPE~a 30 (80)
|..|+|||..|+-.
T Consensus 10 p~~p~rvldap~~~ 23 (318)
T 4ggc_A 10 PSLPDRILDAPEIR 23 (318)
T ss_dssp CSSCSEEEECTTCC
T ss_pred CCCCCEEeeCCCCc
Confidence 78999999999743
No 89
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=56.53 E-value=21 Score=24.41 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=45.1
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
...+..|+. ++-+ ---+.|...+||..+.+==||+.++++.+-- ..=||--|+++||.-.+
T Consensus 19 ~~~i~ikv~--~~~~--~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~-f~fdG~~i~~~~Tpk~L 79 (209)
T 3uf8_A 19 ETHINLKVS--DGSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLR-FLYDGIRIQADQTPEDL 79 (209)
T ss_dssp CSEEEEEEE--CSSC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGCE-EEETTEECCTTCCTTTT
T ss_pred CCcEEEEEE--cCCC--EEEEEEeeCCHHHHHHHHHHHhhCCChheEE-EEECCEeccCCCChHHh
Confidence 456677775 2322 2235668999999999999999999887744 45689999999987543
No 90
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=56.51 E-value=2.8 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=33.0
Q ss_pred CchhhhhhhhhhhhC--CCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFK--VPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFk--v~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|....++.++++++ ++++.+..|-|.-.+|...+.||-
T Consensus 151 k~~~~~~~~~~~~lg~~~~~~~~i~iGD~~~Di~~a~~aG~ 191 (234)
T 2hcf_A 151 ELPHIALERARRMTGANYSPSQIVIIGDTEHDIRCARELDA 191 (234)
T ss_dssp GHHHHHHHHHHHHHCCCCCGGGEEEEESSHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHHhCCCCCcccEEEECCCHHHHHHHHHCCC
Confidence 377888999999999 999999999887777877888874
No 91
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=56.11 E-value=4.8 Score=23.64 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.6
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||++.+
T Consensus 80 i~v~D~G~gi~~~~ 93 (150)
T 1ysr_A 80 IAIDDNGSGVPEGE 93 (150)
T ss_dssp EEEEESSSCCCGGG
T ss_pred EEEEECCCCCCHHH
Confidence 45799999999874
No 92
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=55.64 E-value=9.2 Score=25.60 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeee
Q 034866 17 PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 17 pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhg 74 (80)
|.|--+..-||++..+..++.+--...+++++.+..+--++.=-+++++-|++|=+|+
T Consensus 50 P~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~k 107 (125)
T 3m95_A 50 GDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHH 107 (125)
T ss_dssp CCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHC
T ss_pred ccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcC
Confidence 4555678899999999999999999999999988666444465667788899986653
No 93
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=55.62 E-value=2.6 Score=25.72 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=33.1
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|-...++.++++++++++.+..|-|....|...+.+|-
T Consensus 153 ~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~~G~ 193 (233)
T 3umb_A 153 LYKTAPAAYALAPRAFGVPAAQILFVSSNGWDACGATWHGF 193 (233)
T ss_dssp CCTTSHHHHTHHHHHHTSCGGGEEEEESCHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHhCCCcccEEEEeCCHHHHHHHHHcCC
Confidence 34567778999999999999999999877767777777773
No 94
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=55.27 E-value=4.4 Score=23.51 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.7
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||++.+
T Consensus 82 i~i~D~G~g~~~~~ 95 (152)
T 3a0y_A 82 VSVWNSGPPIPEEL 95 (152)
T ss_dssp EEEEEESCCCCGGG
T ss_pred EEEEeCCCCcCHHH
Confidence 45799999999875
No 95
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Probab=55.26 E-value=2.6 Score=28.56 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=34.6
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+...-|-..+...|+++++++|+.+..|-|.-.+|-..+.||-
T Consensus 156 ~~~~KP~p~~~~~~~~~lg~~p~~~~~v~D~~~di~~a~~aG~ 198 (555)
T 3i28_A 156 VGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGM 198 (555)
T ss_dssp HTCCTTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHHHHHcCCChhHEEEECCcHHHHHHHHHcCC
Confidence 3455677889999999999999999999666667777777774
No 96
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=55.19 E-value=3.8 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=8.6
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 94 i~v~D~G~gi~~~~ 107 (160)
T 1r62_A 94 IDVEDNGPGIPPHL 107 (160)
T ss_dssp EEEEEECTTC----
T ss_pred EEEEeCCCCCCHHH
Confidence 45799999999875
No 97
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=55.13 E-value=5 Score=23.93 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=32.0
Q ss_pred chhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 31 PFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
|=...++.++++++++++.+..|-|.- ..|...+.||-
T Consensus 158 pk~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~~a~~aG~ 196 (234)
T 3ddh_A 158 KTEKEYLRLLSILQIAPSELLMVGNSFKSDIQPVLSLGG 196 (234)
T ss_dssp CSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHHTC
T ss_pred CCHHHHHHHHHHhCCCcceEEEECCCcHHHhHHHHHCCC
Confidence 556789999999999999998887773 78888888884
No 98
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=54.76 E-value=3.1 Score=25.02 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=31.8
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|-...++.++++++++++.+..|-|.-..|...+.||-
T Consensus 148 Kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~aG~ 186 (206)
T 2b0c_A 148 KPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGI 186 (206)
T ss_dssp TTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEeCCCHHHHHHHHHcCC
Confidence 355567889999999999999999777777888888874
No 99
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=54.74 E-value=2.9 Score=25.34 Aligned_cols=42 Identities=10% Similarity=0.178 Sum_probs=34.0
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-...++.++++++++++.+..|-|.-..|...+.||-
T Consensus 147 ~~~Kp~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~ 188 (211)
T 2i6x_A 147 GKYKPNEDIFLEMIADSGMKPEETLFIDDGPANVATAERLGF 188 (211)
T ss_dssp TCCTTSHHHHHHHHHHHCCCGGGEEEECSCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhCCChHHeEEeCCCHHHHHHHHHcCC
Confidence 345567788899999999999999998877777777777774
No 100
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=54.07 E-value=3 Score=25.04 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|-...++.++++++++++.+..|-|.-.+|...+.||-
T Consensus 143 ~~Kp~~~~~~~~~~~lgi~~~~~i~iGD~~nDi~~a~~aG~ 183 (221)
T 2wf7_A 143 ASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGA 183 (221)
T ss_dssp SCTTSSHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCCChHHHHHHHHHcCCChhHeEEEeCCHHHHHHHHHCCC
Confidence 34466678899999999999998888666566666666664
No 101
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=53.55 E-value=3.5 Score=25.44 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.8
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||++.+
T Consensus 94 i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 94 IEVEDDGRGIDKEK 107 (189)
T ss_dssp EEEEECSSCCCHHH
T ss_pred EEEEeCCCCcCHHH
Confidence 45799999999875
No 102
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=53.44 E-value=27 Score=20.67 Aligned_cols=40 Identities=13% Similarity=0.266 Sum_probs=31.9
Q ss_pred ceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccc
Q 034866 20 PFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQ 64 (80)
Q Consensus 20 P~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~Q 64 (80)
+.+.+.+||.+....+| +++++|+... ++--||.=+.+++
T Consensus 11 ~~~~~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 11 ETSEVAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp SEEEEECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred cceeEEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 56778999998777766 5899999988 5777888777766
No 103
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=53.25 E-value=5.8 Score=23.16 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=11.9
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 77 i~i~D~G~gi~~~~ 90 (152)
T 1id0_A 77 IVVEDDGPGIPLSK 90 (152)
T ss_dssp EEEEESSSCCCGGG
T ss_pred EEEEeCCCCcCHHH
Confidence 56799999999876
No 104
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=52.81 E-value=6.1 Score=24.83 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=35.1
Q ss_pred chhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce--eeeeee
Q 034866 31 PFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI--LFIFLN 74 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~--VFlkhg 74 (80)
|-...++.++++++++++.+..|-|.- .+|...+.||- +.+..|
T Consensus 163 p~~~~~~~~~~~l~~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~~ 209 (251)
T 2pke_A 163 KDPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAIGGWGIYTPYA 209 (251)
T ss_dssp CSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHTTCEEEECCCC
T ss_pred CCHHHHHHHHHHhCcCchhEEEECCCchhhHHHHHHCCCEEEEECCC
Confidence 556788999999999999999998887 88888888884 444444
No 105
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A
Probab=52.70 E-value=4.4 Score=25.55 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCCchhhhhhhhhhhhCCCC-cceeEEecCCcccCcccccce--eeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPP-QTSAIITNDGVGINPQQSAGI--LFIFLN 74 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~-~TsAiITndGiGINP~QtAG~--VFlkhg 74 (80)
+...|=...++.+++++++++ ..+..|-|.--.|...+.||- +.+..|
T Consensus 157 ~~~kp~~~~~~~~~~~lgi~~~~~~i~iGD~~nDi~~a~~aG~~~i~v~~~ 207 (267)
T 1swv_A 157 PAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILG 207 (267)
T ss_dssp SCCTTSSHHHHHHHHHHTCCSGGGEEEEESSHHHHHHHHHTTSEEEEECTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCcCEEEEeCCHHHHHHHHHCCCEEEEEcCC
Confidence 345566778899999999998 888888777777777788883 544433
No 106
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=52.35 E-value=3.1 Score=25.21 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=33.1
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.|=...++.+++++++++..+..|-|.--.|...+.||-
T Consensus 143 kpk~~~~~~~~~~l~~~~~~~i~iGD~~~Di~~a~~aG~ 181 (229)
T 2fdr_A 143 KPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGM 181 (229)
T ss_dssp TTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHcCCChhHeEEEcCCHHHHHHHHHCCC
Confidence 666788999999999999999888887777888888884
No 107
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=52.17 E-value=7.5 Score=25.06 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=33.3
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|...|=...++++++++++++..+..|-|+.-.|.-.+.||
T Consensus 148 ~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag 189 (231)
T 1wr8_A 148 KKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVG 189 (231)
T ss_dssp ECTTCCHHHHHHHHHHHHTSCGGGEEEEECSGGGHHHHHHSS
T ss_pred ecCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcC
Confidence 578888889999999999999999888877655555445454
No 108
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=52.03 E-value=6.4 Score=28.58 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=13.8
Q ss_pred ceeEEecCCcccCcccc
Q 034866 49 TSAIITNDGVGINPQQS 65 (80)
Q Consensus 49 TsAiITndGiGINP~Qt 65 (80)
.+..|+|||.||++..-
T Consensus 54 ~~i~V~DnG~Gi~~~~l 70 (333)
T 1b63_A 54 KLIRIRDNGCGIKKDEL 70 (333)
T ss_dssp SEEEEEECSCCCCGGGH
T ss_pred eEEEEEEcCCCcCHHHH
Confidence 35788999999998753
No 109
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=51.74 E-value=5.2 Score=23.76 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=31.3
Q ss_pred chhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 31 PFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+=-..++.++++++++++.+..|-|.-.+|.-.+.||.
T Consensus 143 ~K~~~l~~~~~~lgi~~~~~~~iGD~~~Di~~~~~ag~ 180 (211)
T 1l7m_A 143 AKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGL 180 (211)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHCSE
T ss_pred cHHHHHHHHHHHcCCCHHHEEEEecChhHHHHHHHCCC
Confidence 33467888899999999999999888888877788885
No 110
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=51.74 E-value=3.9 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.-|=...++.+++++++++..+..|-|.-.+|...+.||-
T Consensus 138 ~Kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~ 177 (222)
T 2nyv_A 138 KKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGT 177 (222)
T ss_dssp TCCTTHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHHHhCCCchhEEEECCCHHHHHHHHHCCC
Confidence 3466788899999999999999998877777777777774
No 111
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=51.25 E-value=4.6 Score=28.11 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=13.4
Q ss_pred eeEEecCCcccCcccc
Q 034866 50 SAIITNDGVGINPQQS 65 (80)
Q Consensus 50 sAiITndGiGINP~Qt 65 (80)
...|.|||+||++++-
T Consensus 95 ~i~I~DnG~GMs~edl 110 (235)
T 2ior_A 95 TLTISDNGVGMTRDEV 110 (235)
T ss_dssp EEEEEECSSCCCHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4778999999998763
No 112
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=51.03 E-value=3.5 Score=23.30 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|-...++.++++++++++.+..|-|.-..|...+.+|-
T Consensus 72 ~~Kp~~~~~~~~~~~~~~~~~~~~~vgD~~~di~~a~~~G~ 112 (137)
T 2pr7_A 72 VEKPEEAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGL 112 (137)
T ss_dssp CCTTSHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCC
Confidence 35577788899999999999998888777667777777774
No 113
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=50.78 E-value=9.3 Score=25.19 Aligned_cols=57 Identities=7% Similarity=0.111 Sum_probs=46.3
Q ss_pred CCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeee
Q 034866 17 PKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFL 73 (80)
Q Consensus 17 pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh 73 (80)
|.|--+..-||++..+..++.+--...+++++.+.-+--++.=..++++-|++|=+|
T Consensus 45 P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~ 101 (119)
T 3h9d_A 45 GELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKY 101 (119)
T ss_dssp CCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHH
T ss_pred CccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHc
Confidence 456667889999999999999999999999988765544455567788889998766
No 114
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=50.45 E-value=4.2 Score=25.23 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=33.8
Q ss_pred CCCCchhhhhhhhhhhhCCC-CcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVP-PQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~-~~TsAiITndGiGINP~QtAG~ 68 (80)
+..-|=...++.++++++++ +..+..|-|.-..|...+.||-
T Consensus 163 ~~~kp~~~~~~~~~~~~g~~~~~~~i~vGD~~~Di~~a~~aG~ 205 (240)
T 3sd7_A 163 GTRVNKNEVIQYVLDLCNVKDKDKVIMVGDRKYDIIGAKKIGI 205 (240)
T ss_dssp SCCCCHHHHHHHHHHHHTCCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCcEEEECCCHHHHHHHHHCCC
Confidence 33457788899999999999 9999888777677777777774
No 115
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=50.36 E-value=4.8 Score=28.18 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.2
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
...|+|||+||++++
T Consensus 80 ~i~I~DnG~GMt~ed 94 (236)
T 2gqp_A 80 LLHVTDTGVGMTREE 94 (236)
T ss_dssp EEEEEECSCCCCHHH
T ss_pred EEEEEECCcCCCHHH
Confidence 578899999999876
No 116
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=50.34 E-value=15 Score=24.59 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.7
Q ss_pred EEEEE-ecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCC
Q 034866 8 SFKVT-LTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVP 46 (80)
Q Consensus 8 tFKIt-ltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~ 46 (80)
||.++ ..--|..||++|.|+.++==--||+=|-+.|+.+
T Consensus 7 tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~ 46 (117)
T 2c5l_C 7 SFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYS 46 (117)
T ss_dssp EEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTS
T ss_pred eEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCc
Confidence 44443 4567899999999999998899999999999976
No 117
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=50.18 E-value=5.6 Score=26.12 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.5
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||+|.+
T Consensus 279 i~v~D~G~Gi~~~~ 292 (349)
T 3a0r_A 279 VSVWNSGPPIPEEL 292 (349)
T ss_dssp EEEEEESCCCCGGG
T ss_pred EEEEECCCCCChHH
Confidence 45689999999874
No 118
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6
Probab=50.14 E-value=8.3 Score=23.32 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=33.6
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|-...++.+++++++++..+..|-|.-..|...+.||--+
T Consensus 137 ~KP~~~~~~~~~~~~~~~~~~~i~vGD~~~Di~~a~~aG~~~ 178 (209)
T 2hdo_A 137 RKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVDF 178 (209)
T ss_dssp CTTSSHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTCEE
T ss_pred CCCCcHHHHHHHHHcCCCcccEEEECCChhhHHHHHHcCCeE
Confidence 446678889999999999999999887777777777777533
No 119
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=50.04 E-value=12 Score=23.80 Aligned_cols=42 Identities=12% Similarity=0.049 Sum_probs=33.7
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|...+=...|++.+|+++++++.+..|=|+.-.|.=-+.||
T Consensus 195 ~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag 236 (274)
T 3fzq_A 195 IQKDFHKGKAIKRLQERLGVTQKETICFGDGQNDIVMFQASD 236 (274)
T ss_dssp EETTCSHHHHHHHHHHHHTCCSTTEEEECCSGGGHHHHHTCS
T ss_pred eeCCCCHHHHHHHHHHHcCCCHHHEEEECCChhHHHHHHhcC
Confidence 567777778899999999999999998877666666666666
No 120
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.33 E-value=15 Score=21.54 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=27.2
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcce
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
....+|.|+.++|-.+.|+. +|+..++..+..+.-.+--++|..+
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~--~~~~~~~~~~f~v~p~~g~i~pg~~ 71 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNM--TPPTSALGACFVFSPKEGIIEPSGV 71 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEE--CCCSSHHHHHCEEESSEEEECTTBC
T ss_pred EEEEEEEEEECCcceEEEEE--ecCCccccCcEEEECCcCEECCCCE
Confidence 34567899999998888887 5666655444444333333444333
No 121
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=48.79 E-value=4.5 Score=25.96 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=38.3
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce---eeeeeee
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI---LFIFLNF 75 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~---VFlkhgf 75 (80)
..-|-...++.++++++++++.+..|-|+-..|-..+.||- +.+..|+
T Consensus 129 ~~KP~p~~~~~~~~~lgi~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~ 179 (211)
T 2gmw_A 129 CRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGK 179 (211)
T ss_dssp SSTTSCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSS
T ss_pred CCCCCHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHCCCceEEEEecCC
Confidence 34577789999999999999999999887778888888884 5555553
No 122
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=47.99 E-value=8.2 Score=23.44 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=11.5
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 80 i~V~D~G~gi~~~~ 93 (177)
T 3sl2_A 80 ISVKDEGIGIPKKD 93 (177)
T ss_dssp EEEECCSSCCCTTT
T ss_pred EEEEECCCCCCHHH
Confidence 45689999999865
No 123
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=47.82 E-value=3.3 Score=25.26 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=32.5
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.-|-...++.++++++++++.+..|-|.-..|...+.||-
T Consensus 126 ~kp~~~~~~~~~~~~g~~~~~~i~iGD~~~Di~~a~~aG~ 165 (205)
T 3m9l_A 126 PKPHPGGLLKLAEAWDVSPSRMVMVGDYRFDLDCGRAAGT 165 (205)
T ss_dssp CTTSSHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCC
Confidence 4466678899999999999999998877777777777773
No 124
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=47.57 E-value=4.5 Score=24.33 Aligned_cols=41 Identities=10% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|-...++.+++++++++..+..|-|.-..|...+.||-
T Consensus 139 ~~Kp~~~~~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~aG~ 179 (200)
T 3cnh_A 139 VMKPNPAMYRLGLTLAQVRPEEAVMVDDRLQNVQAARAVGM 179 (200)
T ss_dssp CCTTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHcCCCHHHeEEeCCCHHHHHHHHHCCC
Confidence 34456678889999999999999888777677888888873
No 125
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=46.54 E-value=4.5 Score=25.49 Aligned_cols=41 Identities=22% Similarity=0.395 Sum_probs=33.8
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..-|=...++.+++++++++..+..|-|.-..|...+.||-
T Consensus 166 ~~Kp~~~~~~~~~~~lgi~~~~~i~iGD~~~Di~~a~~aG~ 206 (259)
T 4eek_A 166 RGKPHPDLYTFAAQQLGILPERCVVIEDSVTGGAAGLAAGA 206 (259)
T ss_dssp CCTTSSHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCCChHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHCCC
Confidence 44566778899999999999999999888777888888775
No 126
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=46.48 E-value=5.5 Score=26.12 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=37.0
Q ss_pred Cchhhhhhhhhhhh----CCCCcceeEEecC-CcccCcccccce--eeeeeee
Q 034866 30 APFTVVLKFAAEEF----KVPPQTSAIITND-GVGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 30 aPFtAVlkfaAEeF----kv~~~TsAiITnd-GiGINP~QtAG~--VFlkhgf 75 (80)
-|-...++.|++++ +++|+.+..|-|. -..|-..+.||- +++..|+
T Consensus 204 KP~p~~~~~a~~~l~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~g~ 256 (284)
T 2hx1_A 204 KPDSQMFMFAYDMLRQKMEISKREILMVGDTLHTDILGGNKFGLDTALVLTGN 256 (284)
T ss_dssp TTSSHHHHHHHHHHHTTSCCCGGGEEEEESCTTTHHHHHHHHTCEEEEESSSS
T ss_pred CCCHHHHHHHHHHHhhccCCCcceEEEECCCcHHHHHHHHHcCCeEEEECCCC
Confidence 46667889999999 9999999999888 689999998883 5555554
No 127
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=46.47 E-value=7.5 Score=23.16 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=11.7
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||.+.+
T Consensus 80 i~i~D~G~gi~~~~ 93 (161)
T 1bxd_A 80 FQVEDDGPGIAPEQ 93 (161)
T ss_dssp EEEEEESSCSCTTG
T ss_pred EEEEeCCCCCCHHH
Confidence 55799999999875
No 128
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=46.45 E-value=9.1 Score=26.20 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=13.3
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
+..|+|||.||.+..
T Consensus 50 ~i~V~DnG~GIp~~~ 64 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDI 64 (201)
T ss_dssp CEEEEECSSCCCCSB
T ss_pred EEEEEECCCCcCccc
Confidence 678899999999876
No 129
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=46.30 E-value=6.4 Score=25.41 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=34.9
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
+..-|-...++.++++++++++.+..|-|.- .+|...+.||-
T Consensus 158 ~~~Kp~~~~~~~~~~~~g~~~~~~~~vGD~~~~Di~~a~~aG~ 200 (263)
T 3k1z_A 158 GWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGM 200 (263)
T ss_dssp SSCTTSHHHHHHHHHHHTCCGGGEEEEESCHHHHTHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHEEEECCCcHHHHHHHHHCCC
Confidence 4456777889999999999999998888774 78888888884
No 130
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=46.07 E-value=5 Score=24.95 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=32.1
Q ss_pred chhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 31 PFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
|=...++.++++++++++.+..|-|.-.+|...+.||-
T Consensus 121 ~k~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~ 158 (187)
T 2wm8_A 121 SKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGV 158 (187)
T ss_dssp CHHHHHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHcCCChHHEEEEeCCccChHHHHHcCC
Confidence 33467888999999999999999888888888888885
No 131
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=45.52 E-value=5.3 Score=28.74 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.8
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|||.||+|.+
T Consensus 153 i~V~D~G~Gi~~~~ 166 (379)
T 1b3q_A 153 IEVEDDGRGIDKEK 166 (379)
T ss_dssp EEEEECSCCCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 34799999999985
No 132
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.16 E-value=36 Score=18.46 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=33.3
Q ss_pred CceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 19 LPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 19 lP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
..+. +.|+.++....+-+-.+++.++|+..--++-+ |-=++..+|-+
T Consensus 18 ~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~-gk~L~d~~tL~ 64 (81)
T 2dzi_A 18 RECS-LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK-GKALADGKRLS 64 (81)
T ss_dssp CEEE-EEECSSCBHHHHHHHHHHHTCCCTTTCEEEET-TEECCTTSBGG
T ss_pred CEEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC-CeECCCCCcHH
Confidence 4554 58999998888888889999999987766643 43344444443
No 133
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=44.59 E-value=8 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=34.3
Q ss_pred CCchhhhhhhhhhhhCCCC-cceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPP-QTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~-~TsAiITndGiGINP~QtAG~ 68 (80)
.-|=...++.+++++++++ +.+..|-|.-..|...+.||-
T Consensus 203 ~Kp~~~~~~~~~~~lgi~~~~~~i~vGD~~~Di~~a~~aG~ 243 (282)
T 3nuq_A 203 CKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGM 243 (282)
T ss_dssp CTTSHHHHHHHHHHHTCCCGGGEEEEESCHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHcCCCCcccEEEEcCCHHHHHHHHHCCC
Confidence 3677788999999999998 888888888788888888887
No 134
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=44.11 E-value=5.8 Score=28.07 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=14.0
Q ss_pred ceeEEecCCcccCcccc
Q 034866 49 TSAIITNDGVGINPQQS 65 (80)
Q Consensus 49 TsAiITndGiGINP~Qt 65 (80)
....|+|||+||++.+-
T Consensus 79 ~~i~V~DnG~GMs~edl 95 (228)
T 3t0h_A 79 RTLTIVDTGIGMTKADL 95 (228)
T ss_dssp TEEEEEECSCCCCHHHH
T ss_pred eEEEEEeCCCCCCHHHH
Confidence 35788999999998764
No 135
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=43.72 E-value=6.1 Score=24.53 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.5
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 158 i~i~D~G~gi~~~~ 171 (244)
T 3d36_A 158 IRIADTGVGMTKEQ 171 (244)
T ss_dssp EEEEECSSCCCHHH
T ss_pred EEEEecCCCCCHHH
Confidence 45799999999864
No 136
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=43.58 E-value=45 Score=22.33 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=37.1
Q ss_pred CceEEEEEEec-CCCCCceeEEeeCCCCchhhhhhhhhhhhCCC--CcceeEEecC
Q 034866 4 RGKVSFKVTLT-SDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVP--PQTSAIITND 56 (80)
Q Consensus 4 ~~KVtFKItlt-sdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~--~~TsAiITnd 56 (80)
+.-..|||+|. +.|. =+|.|.||.+.-|..+=+.--.-|+.. .-.+-.|.++
T Consensus 6 ~~iy~lrV~L~~~~p~-iWRri~Vp~~~TL~~LH~vIq~afgw~~~HL~~F~~~~~ 60 (188)
T 2i1s_A 6 EKVYHLKLSIKGITPQ-IWRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFEMVNP 60 (188)
T ss_dssp CEEEEEEEEETTCSSC-EEEEEEEETTCBHHHHHHHHHHHTTCCCCSCEEEEEECT
T ss_pred CcEEEEEEEECCCCCC-eEEEEEECCCCCHHHHHHHHHHHhCCCCCEeeEEEECCC
Confidence 34467899998 5565 499999999999988776666667653 2344555555
No 137
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=43.37 E-value=21 Score=22.47 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=24.9
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcc
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQT 49 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~T 49 (80)
-.|.||...||..+..-.+|.++++++.
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~~~ 43 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRLEH 43 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcce
Confidence 3689999999999999999999998644
No 138
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger, ATP-binding, RNA-binding, nonsense-M mRNA decay, nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Probab=43.15 E-value=25 Score=22.22 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhh
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTV 34 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtA 34 (80)
++|.|.+..-.--|+=+|-|-||.+..|.+
T Consensus 66 ~~v~F~LLtKkGnKqq~k~l~vPsds~fA~ 95 (97)
T 2wjv_D 66 DTMPFVMLTRKGNKQQFKILNVPMSSQLAA 95 (97)
T ss_dssp CEEEEEEEC-----CCEEEEEEESSSHHHH
T ss_pred CeeEEEEEEecCCcceeEEEecCCcchhhh
Confidence 689999988888899999999999998753
No 139
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=41.75 E-value=13 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.8
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||.|.+
T Consensus 281 i~V~D~G~GI~~~~ 294 (388)
T 1gkz_A 281 IRISDRGGGIAHKD 294 (388)
T ss_dssp EEEECCSCCCCTTT
T ss_pred EEEEEeCCCcCHHH
Confidence 45799999999875
No 140
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=41.58 E-value=6.9 Score=24.94 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=11.4
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||++.+
T Consensus 190 i~V~D~G~Gi~~~~ 203 (268)
T 4ew8_A 190 LDVSDTGRGVPFHV 203 (268)
T ss_dssp EEEEESSCCCCHHH
T ss_pred EEEEcCCCCCCHHH
Confidence 55799999998753
No 141
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}
Probab=41.13 E-value=5.9 Score=25.86 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=34.2
Q ss_pred eCCCCchhhhhhhhhhhhCC-------CCcceeEEecCCcccCcccccce
Q 034866 26 VPEAAPFTVVLKFAAEEFKV-------PPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv-------~~~TsAiITndGiGINP~QtAG~ 68 (80)
++..-|-...++.+++++++ +++.+..|-|.--+|...+.||-
T Consensus 166 ~~~~kp~~~~~~~~~~~lgi~~~~~~~~~~~~i~~GDs~nDi~~a~~AG~ 215 (275)
T 2qlt_A 166 VKQGKPHPEPYLKGRNGLGFPINEQDPSKSKVVVFEDAPAGIAAGKAAGC 215 (275)
T ss_dssp CSSCTTSSHHHHHHHHHTTCCCCSSCGGGSCEEEEESSHHHHHHHHHTTC
T ss_pred CCCCCCChHHHHHHHHHcCCCccccCCCcceEEEEeCCHHHHHHHHHcCC
Confidence 34455667788999999999 99999999887777777777774
No 142
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}
Probab=40.95 E-value=7.8 Score=25.05 Aligned_cols=49 Identities=14% Similarity=0.075 Sum_probs=37.4
Q ss_pred CCCCchhhhhhhhhhhhCCCC-cceeEEecCCcccCcccccce--eeeeeee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPP-QTSAIITNDGVGINPQQSAGI--LFIFLNF 75 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~-~TsAiITndGiGINP~QtAG~--VFlkhgf 75 (80)
...-|-...+..|++++++.+ +.+..|=|.=.+|-..+.||- |.+..|+
T Consensus 84 ~~~KP~p~~~~~a~~~l~~~~~~~~v~VGDs~~Di~aA~~aG~~~i~v~~g~ 135 (196)
T 2oda_A 84 TAGWPQPDACWMALMALNVSQLEGCVLISGDPRLLQSGLNAGLWTIGLASCG 135 (196)
T ss_dssp SSCTTSTHHHHHHHHHTTCSCSTTCEEEESCHHHHHHHHHHTCEEEEESSSS
T ss_pred CCCCCChHHHHHHHHHcCCCCCccEEEEeCCHHHHHHHHHCCCEEEEEccCC
Confidence 344577788899999999965 788889877788888888884 5555554
No 143
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=40.32 E-value=31 Score=19.88 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=26.9
Q ss_pred EEe-eCCCCchhhhhhhhhhhhCCCCcceeEEe
Q 034866 23 VFS-VPEAAPFTVVLKFAAEEFKVPPQTSAIIT 54 (80)
Q Consensus 23 vls-VPE~aPFtAVlkfaAEeFkv~~~TsAiIT 54 (80)
++. |+.++....+..+-+++.++|+..--++.
T Consensus 13 ~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~ 45 (86)
T 2kzr_A 13 LLQGLSSRTRLRELQGQIAAITGIAPGSQRILV 45 (86)
T ss_dssp EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE
T ss_pred EeeecCCCCCHHHHHHHHHHHhCCCccceEEEe
Confidence 467 99999999999999999999876665654
No 144
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=40.32 E-value=9.2 Score=25.61 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCC-cccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDG-VGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndG-iGINP~QtAG~ 68 (80)
+..-|-...++.++++++++++.+..|-|.- ..|-..+.||-
T Consensus 212 ~~~KP~~~~~~~~~~~lgi~~~e~l~vGD~~~~Di~~a~~aG~ 254 (306)
T 2oyc_A 212 VVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGM 254 (306)
T ss_dssp ECSTTSTHHHHHHHHHSCCCGGGEEEEESCTTTHHHHHHHHTC
T ss_pred eeCCCCHHHHHHHHHHcCCChHHEEEECCCchHHHHHHHHCCC
Confidence 4456777889999999999999999988874 78888888884
No 145
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=40.22 E-value=15 Score=21.96 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=32.8
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|-...++.+++++++++..+..|-|.-..|...+.+|--+
T Consensus 82 ~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~ag~~~ 123 (162)
T 2p9j_A 82 SYKKLEIYEKIKEKYSLKDEEIGFIGDDVVDIEVMKKVGFPV 123 (162)
T ss_dssp C--CHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred CCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 346677888999999999999999988878887777777543
No 146
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=40.12 E-value=15 Score=24.17 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=32.8
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|...+=...+++.++++++++..+..|=|+.-.|.--+.||
T Consensus 186 ~~~~~~K~~~~~~l~~~l~i~~~~~~~~GD~~nD~~m~~~ag 227 (271)
T 1rlm_A 186 IIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMAR 227 (271)
T ss_dssp ECTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHCS
T ss_pred EcCCCChHHHHHHHHHHhCCCHHHEEEECCcHHHHHHHHHcC
Confidence 467778888999999999999999888877655555555554
No 147
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=39.97 E-value=8.6 Score=27.67 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=13.4
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
....|+|||+||++.+
T Consensus 115 ~~I~I~DnG~GMs~ed 130 (264)
T 1yc1_A 115 RTLTIVDTGIGMTKAD 130 (264)
T ss_dssp TEEEEEECSCCCCHHH
T ss_pred eEEEEEECCcCCCHHH
Confidence 3578899999999876
No 148
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=39.81 E-value=6.7 Score=24.67 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceee
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF 70 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF 70 (80)
.-|-...++.++++++++|+.+..|-|.-..|..++.+|--+
T Consensus 115 ~KP~p~~~~~~~~~~gi~~~~~l~VGD~~~Di~~A~~aG~~~ 156 (176)
T 2fpr_A 115 RKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGING 156 (176)
T ss_dssp STTSCGGGGGGC----CCGGGCEEEESSHHHHHHHHHHTSEE
T ss_pred cCCCHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHcCCeE
Confidence 346778889999999999999999987777787788777543
No 149
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=39.66 E-value=16 Score=21.86 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=32.6
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
..|=...++.+++++++++..+..|-|.-..|...+.||-
T Consensus 77 ~kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~ 116 (164)
T 3e8m_A 77 VVDKLSAAEELCNELGINLEQVAYIGDDLNDAKLLKRVGI 116 (164)
T ss_dssp CSCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHTTSSE
T ss_pred cCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC
Confidence 3677888999999999999999999777666766666664
No 150
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=39.43 E-value=13 Score=27.99 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.3
Q ss_pred eeEEecCCcccCcccc
Q 034866 50 SAIITNDGVGINPQQS 65 (80)
Q Consensus 50 sAiITndGiGINP~Qt 65 (80)
...|+|||.||+|.+-
T Consensus 59 ~I~V~DnG~GI~~~~l 74 (348)
T 3na3_A 59 LIQIQDNGTGIRKEDL 74 (348)
T ss_dssp EEEEEECSCCCCGGGG
T ss_pred EEEEEECCcCcChHHh
Confidence 3678999999999874
No 151
>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}
Probab=39.42 E-value=22 Score=22.64 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=26.2
Q ss_pred eeEEeeCCCCchhhhhhhhhhhhCCCCcceeE
Q 034866 21 FKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAI 52 (80)
Q Consensus 21 ~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAi 52 (80)
+++...| .|+..-++.+.++.+++-+..-+
T Consensus 23 ~~Ly~~~--~~~~~~v~~~L~~~gi~~e~~~v 52 (244)
T 4ikh_A 23 IQLYSLP--TPNGVKVSIMLEEIGLPYEAHRV 52 (244)
T ss_dssp EEEEECS--SHHHHHHHHHHHHHTCCEEEEEC
T ss_pred eEEEeCC--CCChHHHHHHHHHcCCCceEEEe
Confidence 8999998 59999999999999999876544
No 152
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=38.96 E-value=11 Score=22.18 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=29.5
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
+..-|-...++.++++++++ .+..|-|.-.+|...+.||-
T Consensus 134 ~~~kp~~~~~~~~~~~~~~~--~~~~iGD~~~Di~~a~~aG~ 173 (190)
T 2fi1_A 134 FKRKPNPESMLYLREKYQIS--SGLVIGDRPIDIEAGQAAGL 173 (190)
T ss_dssp CCCTTSCHHHHHHHHHTTCS--SEEEEESSHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHcCC
Confidence 44556778889999999999 56666666666777777773
No 153
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=38.93 E-value=20 Score=21.29 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=33.4
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeE-EecCC-ccc--Ccccccceeeeeee
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAI-ITNDG-VGI--NPQQSAGILFIFLN 74 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAi-ITndG-iGI--NP~QtAG~VFlkhg 74 (80)
..+.|+.++-|..++.-.+|+++++..-..+ ..+.- -++ ++.++-..+=||||
T Consensus 16 ~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hG 72 (80)
T 2pjh_A 16 KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHG 72 (80)
T ss_dssp EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTT
T ss_pred EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCC
Confidence 3456888889999999999999997533222 22221 112 25555555556776
No 154
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=38.67 E-value=16 Score=23.96 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCceeEEeeCCC-CchhhhhhhhhhhhCCCCcceeEE
Q 034866 18 KLPFKVFSVPEA-APFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 18 klP~kvlsVPE~-aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
.+=-+|-..|++ .-=.|+++|-|+.|+||...--|+
T Consensus 37 ~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~Iv 73 (108)
T 1n91_A 37 EVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIE 73 (108)
T ss_dssp CEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEES
T ss_pred EEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEEE
Confidence 333444444542 245789999999999998766554
No 155
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=38.11 E-value=14 Score=27.48 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=15.9
Q ss_pred eeEEecCCcccCcccccceeeeee
Q 034866 50 SAIITNDGVGINPQQSAGILFIFL 73 (80)
Q Consensus 50 sAiITndGiGINP~QtAG~VFlkh 73 (80)
...|+|||.||++.+-. .+|..|
T Consensus 65 ~I~V~DnG~Gi~~~~l~-~~f~~~ 87 (365)
T 1h7s_A 65 LIEVSDNGCGVEEENFE-GLTLKH 87 (365)
T ss_dssp EEEEEECSCCCCGGGSG-GGGC--
T ss_pred EEEEEECCCCcCHHHHH-HHhhhc
Confidence 57789999999988644 345443
No 156
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=37.72 E-value=9.8 Score=27.59 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.0
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
...|+|+|+||++..
T Consensus 76 ~l~I~DnGiGMt~ed 90 (269)
T 1qy5_A 76 LLHVTDTGVGMTREE 90 (269)
T ss_dssp EEEEEECSCCCCHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 467899999999876
No 157
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=37.44 E-value=8.4 Score=22.87 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.-|-...++.+++++++++..+..|-|.--.|...+.||-
T Consensus 144 ~k~~~~~~~~~~~~~~~~~~~~i~iGD~~nDi~~~~~aG~ 183 (225)
T 3d6j_A 144 HKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGV 183 (225)
T ss_dssp CTTSTHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHCCC
Confidence 3455577889999999999998888776666777777775
No 158
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=36.75 E-value=15 Score=27.68 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=13.9
Q ss_pred ceeEEecCCcccCcccc
Q 034866 49 TSAIITNDGVGINPQQS 65 (80)
Q Consensus 49 TsAiITndGiGINP~Qt 65 (80)
.+..|+|||.||.|..-
T Consensus 55 ~~i~V~DnG~Gi~~~~l 71 (367)
T 3h4l_A 55 ESIECSDNGDGIDPSNY 71 (367)
T ss_dssp SEEEEEECSCCCCGGGT
T ss_pred EEEEEEECCCCcChhHh
Confidence 35778999999998763
No 159
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=36.26 E-value=16 Score=24.84 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=32.2
Q ss_pred eEEEEEEecCCCCCceeE--------EeeCCCC-------chhhhhhhhhhhhCCCCc
Q 034866 6 KVSFKVTLTSDPKLPFKV--------FSVPEAA-------PFTVVLKFAAEEFKVPPQ 48 (80)
Q Consensus 6 KVtFKItltsdpklP~kv--------lsVPE~a-------PFtAVlkfaAEeFkv~~~ 48 (80)
..+|++.||-+...-+.. +.||+.. -|.|+|.||.|+.++..-
T Consensus 22 ~L~F~~~lTe~~~~~W~~Vl~~~~Lyv~iP~~~~~~gsKe~fv~LLEfAEe~L~~~~V 79 (126)
T 1zo0_A 22 VLSIQCTLTEAKQVTWRAVWNGGGLYIELPAGPLPEGSKDSFAALLEFAEEQLRADHV 79 (126)
T ss_dssp EEEEEECCTTSCCEEEEEEEETTEEEEECSSCCCSSCCSHHHHHHHHHHHHHHCCCCE
T ss_pred EEEEEEEecCCCcceEEEEEeCCeEEEEcCCccccccchHHHHHHHHHHHHhcCCCEE
Confidence 466888888777665553 3477766 399999999999999753
No 160
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=36.20 E-value=9.1 Score=27.97 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=13.8
Q ss_pred ceeEEecCCcccCcccc
Q 034866 49 TSAIITNDGVGINPQQS 65 (80)
Q Consensus 49 TsAiITndGiGINP~Qt 65 (80)
....|+|||+||++.+-
T Consensus 107 ~~I~I~DnG~GMt~edl 123 (256)
T 3o0i_A 107 RTLTIVDTGIGMTKADL 123 (256)
T ss_dssp TEEEEEECSCCCCHHHH
T ss_pred eEEEEecCCCCcCHHHH
Confidence 35788999999998763
No 161
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=35.90 E-value=52 Score=17.61 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=32.8
Q ss_pred EEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEe
Q 034866 9 FKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIIT 54 (80)
Q Consensus 9 FKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiIT 54 (80)
++|++.+ ....+. +.|+.+.....+-+-.+++.++|+..--++-
T Consensus 5 m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 5 LNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 4555555 344454 5899999888888888999999998776664
No 162
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=35.89 E-value=19 Score=23.20 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=31.1
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|...+=...|++++|+++++++.+..|=|+.-.|.=-+.||
T Consensus 192 ~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag 233 (279)
T 4dw8_A 192 VPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAG 233 (279)
T ss_dssp ECTTCCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSS
T ss_pred ecCCCChHHHHHHHHHHcCCCHHHEEEECCChhhHHHHHHcC
Confidence 466666688899999999999998888866655554444444
No 163
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=35.77 E-value=14 Score=26.26 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=11.6
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||.+++
T Consensus 272 i~V~D~G~GI~~~~ 285 (394)
T 2e0a_A 272 IKISDRGGGVPLRI 285 (394)
T ss_dssp EEEEECSCCCCGGG
T ss_pred EEEEeCCCCcCHHH
Confidence 45799999999864
No 164
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=35.71 E-value=8.3 Score=24.55 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=32.0
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
++.-|-...++.++++++++++.+..|-|.-.+|...+.||-
T Consensus 167 ~~~Kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~ 208 (243)
T 2hsz_A 167 PEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGC 208 (243)
T ss_dssp SSCTTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHhCcChhhEEEEcCCHHHHHHHHHCCC
Confidence 445566778999999999999998888776566666666663
No 165
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=34.50 E-value=29 Score=21.42 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=27.2
Q ss_pred chhhhhhhhhhhhCCCCcceeEEecCCc-ccCccccccee
Q 034866 31 PFTVVLKFAAEEFKVPPQTSAIITNDGV-GINPQQSAGIL 69 (80)
Q Consensus 31 PFtAVlkfaAEeFkv~~~TsAiITndGi-GINP~QtAG~V 69 (80)
|-...++.+++++++++ ..|-|.-. +|...+.||--
T Consensus 151 p~~~~~~~~~~~~~~~~---~~vgD~~~~Di~~a~~aG~~ 187 (220)
T 2zg6_A 151 PNPKIFGFALAKVGYPA---VHVGDIYELDYIGAKRSYVD 187 (220)
T ss_dssp --CCHHHHHHHHHCSSE---EEEESSCCCCCCCSSSCSEE
T ss_pred CCHHHHHHHHHHcCCCe---EEEcCCchHhHHHHHHCCCe
Confidence 44567788899999988 66666666 89999999863
No 166
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=34.37 E-value=13 Score=23.66 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=31.1
Q ss_pred hhhhhhCCCCcceeEEecCCcccCcccccceeeeee
Q 034866 38 FAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFL 73 (80)
Q Consensus 38 faAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh 73 (80)
.+++++++++..+..|-|.-.+|-..+.||-.+...
T Consensus 154 ~~~~~~~~~~~~~~~vGDs~~Di~~a~~aG~~~~~~ 189 (236)
T 2fea_A 154 SVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFARD 189 (236)
T ss_dssp HHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEECH
T ss_pred HHHHHHhccCCeEEEEeCChHHHHHHHhCCeeeech
Confidence 677899999999999999888999999999877643
No 167
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=34.19 E-value=59 Score=21.03 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=44.2
Q ss_pred eEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 6 KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
.+..||. .+ ---..+.|=..+||.-+.+-=|+.-++++..... -=||.-|||.||.-
T Consensus 21 ~IniKV~--~~--g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirF-lfDG~rI~~~~TP~ 77 (95)
T 2l76_A 21 LFPLKIR--CR--ADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILL-LFGETELSPTATPR 77 (95)
T ss_dssp CEEEEEE--CS--SSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEE-EETTEECCTTSCHH
T ss_pred eEEEEEE--cC--CcEEEEEEecCChHHHHHHHHHhhcCCChhhEEE-EECCcCCCCCCCHh
Confidence 3666666 22 2345567778999999999999999999987554 56899999999864
No 168
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=33.65 E-value=34 Score=26.72 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=27.9
Q ss_pred CceeEEeeCCCCchhhhhhhhhhhhCCCCcce
Q 034866 19 LPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 19 lP~kvlsVPE~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
...+.+.|+..++|..+.+-.|++||+|+...
T Consensus 35 ~~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~ 66 (530)
T 2ylm_A 35 VKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQI 66 (530)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTSCGGGE
T ss_pred CCcceEEEcCcCCHHHHHHHHHHHhCcCcccE
Confidence 35578899999999999999999999987665
No 169
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=33.32 E-value=11 Score=27.31 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=13.9
Q ss_pred ceeEEecCCcccCcccc
Q 034866 49 TSAIITNDGVGINPQQS 65 (80)
Q Consensus 49 TsAiITndGiGINP~Qt 65 (80)
....|.|+|+|+++++-
T Consensus 86 ~~L~I~DnGiGMt~edL 102 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADL 102 (239)
T ss_dssp TEEEEEECSCCCCHHHH
T ss_pred cEEEEEeCCCCCCHHHH
Confidence 34788999999998864
No 170
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=32.24 E-value=20 Score=27.67 Aligned_cols=15 Identities=33% Similarity=0.807 Sum_probs=12.6
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
...|+|||.||++.+
T Consensus 72 ~I~V~DnG~GI~~e~ 86 (471)
T 1mu5_A 72 KVNVVDNGIGIPPQE 86 (471)
T ss_dssp EEEEECCSCCCCGGG
T ss_pred EEEEEECCCCCCHHH
Confidence 466899999999875
No 171
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=32.04 E-value=16 Score=23.18 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 28 EAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+.-| ..++.++++++++++.++.|=|.-.+|.-.+.||
T Consensus 93 ~~K~--~~~~~~~~~~g~~~~~~~~vGD~~nDi~~~~~ag 130 (189)
T 3mn1_A 93 EDKL--VVLDKLLAELQLGYEQVAYLGDDLPDLPVIRRVG 130 (189)
T ss_dssp SCHH--HHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSS
T ss_pred CChH--HHHHHHHHHcCCChhHEEEECCCHHHHHHHHHCC
Confidence 4444 8899999999999999999977666665555555
No 172
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=32.04 E-value=27 Score=22.74 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=17.5
Q ss_pred CCceEEEEEEecCCCCCceeEEe
Q 034866 3 SRGKVSFKVTLTSDPKLPFKVFS 25 (80)
Q Consensus 3 ~~~KVtFKItltsdpklP~kvls 25 (80)
.++..+++|+..||-++-|||=+
T Consensus 23 ~gg~~~l~L~N~t~~~vAFKVKt 45 (116)
T 1m1s_A 23 TGGNSTHNITSESDSRLAFKVKS 45 (116)
T ss_dssp TCEEEEEEEEECSSSEEEEEEEE
T ss_pred CCCEEEEEEECCCCCeEEEEEEe
Confidence 35677888888888888888743
No 173
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A* 1xr6_A
Probab=32.00 E-value=43 Score=25.42 Aligned_cols=51 Identities=10% Similarity=0.164 Sum_probs=30.3
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeeeeee
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLNFVS 77 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhgf~~ 77 (80)
.+++||+..-...+.++.+ ++|+.... .+-.-.|.|..--+-.||||+|+.
T Consensus 329 ~i~s~~~~~~~~~l~~~~~-~~Gl~~t~----~dKt~~~~~~~~~~l~FLkr~f~~ 379 (460)
T 1xr7_A 329 VIFSYKYKLDMEAIAKEGQ-KYGLTITP----ADKSSEFKELDYGNVTFLKRGFRQ 379 (460)
T ss_dssp EEEEESSCCCHHHHHHTTG-GGTCCEEE----STTCSSCCCBCTTTCCBTTBEEEE
T ss_pred eEEEeCCcCCHHHHHHHHH-HcCcEech----hhhcCCCCCCCcCCceEEeeeeEE
Confidence 4688887754455555444 77775432 111123444445688999999974
No 174
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=31.87 E-value=20 Score=22.06 Aligned_cols=39 Identities=5% Similarity=-0.143 Sum_probs=31.5
Q ss_pred hhhhhhhhhhhC---CCCcceeEEecCCcccCcccccceeee
Q 034866 33 TVVLKFAAEEFK---VPPQTSAIITNDGVGINPQQSAGILFI 71 (80)
Q Consensus 33 tAVlkfaAEeFk---v~~~TsAiITndGiGINP~QtAG~VFl 71 (80)
...++-++++.+ +++..+..|-|.-.+|.-.+.||..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~ 202 (232)
T 3fvv_A 161 VVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIA 202 (232)
T ss_dssp HHHHHHHHHHTTCCGGGSSEEEEEECCGGGHHHHHHSSEEEE
T ss_pred HHHHHHHHHHcCCCcCchhheEEEeCCHhhHHHHHhCCCeEE
Confidence 456778889999 999999999988888877788876543
No 175
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=31.85 E-value=20 Score=23.16 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=31.3
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|...+=...|++.+++++++++.+..|=|+.-.|.=-+.||
T Consensus 197 ~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag 238 (290)
T 3dnp_A 197 VPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAG 238 (290)
T ss_dssp EETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSS
T ss_pred EECCCCHHHHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcC
Confidence 566666778899999999999999888866655554444444
No 176
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=31.71 E-value=60 Score=17.07 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=31.1
Q ss_pred EEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccc
Q 034866 23 VFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65 (80)
Q Consensus 23 vlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~Qt 65 (80)
.+.|++++....+-+-.+++.++|+..--++-+ |-=++..+|
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~t 55 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRT 55 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-TEECCTTCB
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC-CeECCCCCc
Confidence 468999999999999999999999887766643 433333443
No 177
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=31.58 E-value=19 Score=27.03 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=13.6
Q ss_pred eeEEecCCcccCcccc
Q 034866 50 SAIITNDGVGINPQQS 65 (80)
Q Consensus 50 sAiITndGiGINP~Qt 65 (80)
+..|+|||.||.+..-
T Consensus 65 ~i~V~DnG~GIp~~~~ 80 (390)
T 1kij_A 65 SLTVEDNGRGIPVDLM 80 (390)
T ss_dssp CEEEEECSSCCCCSEE
T ss_pred EEEEEEcCCCCCHHHh
Confidence 6778999999998764
No 178
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=31.18 E-value=24 Score=22.12 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=33.1
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL 69 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V 69 (80)
+..-|=...++.+++++++++..+..|-|+-..|...+.||--
T Consensus 97 ~~~kpk~~~~~~~~~~~g~~~~~~~~iGD~~~Di~~a~~ag~~ 139 (188)
T 2r8e_A 97 QGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLS 139 (188)
T ss_dssp CSCSCSHHHHHHHHHHHTCCGGGEEEEESSGGGHHHHTTSSEE
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCE
Confidence 3456677889999999999999999987776666666666643
No 179
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=31.15 E-value=12 Score=26.45 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=11.4
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||.+.+
T Consensus 273 i~V~D~G~GI~~~~ 286 (394)
T 2btz_A 273 IKMSDRGGGVPLRK 286 (394)
T ss_dssp EEEEECSCCCCHHH
T ss_pred EEEEeCCCCCCHHH
Confidence 45799999998864
No 180
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=30.17 E-value=13 Score=27.66 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.5
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
....|.|+|+|+++.+
T Consensus 93 ~tLtI~DNGiGMt~ed 108 (281)
T 3peh_A 93 NILSITDTGIGMTKVD 108 (281)
T ss_dssp TEEEEEECSCCCCHHH
T ss_pred cEEEEEeCCCCCCHHH
Confidence 3578899999999876
No 181
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=29.36 E-value=25 Score=23.32 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=31.0
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
.|=..+++.++++++++++.++.|=|.-.+|.-.+.||-
T Consensus 123 k~K~~~l~~~~~~lg~~~~~~~~vGDs~nDi~~~~~ag~ 161 (211)
T 3ij5_A 123 SDKLVAYHELLATLQCQPEQVAYIGDDLIDWPVMAQVGL 161 (211)
T ss_dssp SSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSE
T ss_pred CChHHHHHHHHHHcCcCcceEEEEcCCHHHHHHHHHCCC
Confidence 455788999999999999999999777666666666663
No 182
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=29.34 E-value=16 Score=26.03 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=11.4
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|+|+|.||.+.+
T Consensus 285 i~V~D~G~GI~~e~ 298 (407)
T 2q8g_A 285 VKMSDRGGGVPLRK 298 (407)
T ss_dssp EEEEECSCCCCHHH
T ss_pred EEEEecCCCCCHHH
Confidence 45799999998864
No 183
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=28.27 E-value=25 Score=27.71 Aligned_cols=15 Identities=33% Similarity=0.807 Sum_probs=12.5
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
...|+|+|.||++.+
T Consensus 71 ~I~V~DnG~GI~~e~ 85 (530)
T 2zbk_B 71 KVNVVDNGIGIPPQE 85 (530)
T ss_dssp EEEEECCSCCCCGGG
T ss_pred EEEEEECCCCCCHHH
Confidence 466799999999875
No 184
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=28.16 E-value=66 Score=16.40 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=21.0
Q ss_pred EEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCC
Q 034866 23 VFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDG 57 (80)
Q Consensus 23 vlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndG 57 (80)
+++|+++++...+++.-.+. ...+..+.++|
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~----~~~~~pV~d~~ 32 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRN----KAGSAVVMEGD 32 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHT----TCSEEEEEETT
T ss_pred CeEECCCCcHHHHHHHHHHc----CCCEEEEEECC
Confidence 57889999888777765542 24456677664
No 185
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=28.07 E-value=21 Score=22.82 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=30.7
Q ss_pred CchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 30 APFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
-|-...++.+++++++++..++.|-|.-..|.-.+.||-
T Consensus 93 kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~ 131 (191)
T 3n1u_A 93 VDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGL 131 (191)
T ss_dssp SSCHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSE
T ss_pred CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCC
Confidence 466788999999999999999999777666666565553
No 186
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.93 E-value=90 Score=17.87 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=35.1
Q ss_pred CceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhh--CCCCcceeEEe
Q 034866 4 RGKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEF--KVPPQTSAIIT 54 (80)
Q Consensus 4 ~~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeF--kv~~~TsAiIT 54 (80)
++.++.+|...+....++.| .|+++.....+-+-.+++. ++|+..--+|-
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v-~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~ 56 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLEL-SGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY 56 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEE-ECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE
T ss_pred CcEEEEEEEeCCCCeEEEEE-ecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE
Confidence 44555666555555445554 6778888888888888888 99988776663
No 187
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=27.90 E-value=32 Score=22.46 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=30.5
Q ss_pred CCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 29 AAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
..|=...++.+++++++++..++.|=|.-..|.-.+.||
T Consensus 98 ~k~k~~~~~~~~~~~~~~~~~~~~vGD~~nDi~~~~~ag 136 (195)
T 3n07_A 98 QDDKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKVA 136 (195)
T ss_dssp CSSHHHHHHHHHHHHCCCGGGEEEEESSGGGHHHHTTSS
T ss_pred CCCcHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHCC
Confidence 367778999999999999999999877655555555555
No 188
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=27.88 E-value=18 Score=26.10 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.3
Q ss_pred eEEecCCcccCccc
Q 034866 51 AIITNDGVGINPQQ 64 (80)
Q Consensus 51 AiITndGiGINP~Q 64 (80)
..|.|+|.||.|.+
T Consensus 296 I~V~D~G~GI~~e~ 309 (419)
T 1y8o_A 296 IKISDLGGGVPLRK 309 (419)
T ss_dssp EEEEECSCCCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 45799999998854
No 189
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=27.33 E-value=48 Score=22.16 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=15.9
Q ss_pred CCCCceEEEEEEecCCCCCc
Q 034866 1 MTSRGKVSFKVTLTSDPKLP 20 (80)
Q Consensus 1 ~~~~~KVtFKItltsdpklP 20 (80)
|.++++|++-=.|+.||.+=
T Consensus 1 Ma~~N~V~LiG~L~~dPelr 20 (168)
T 3afp_A 1 MAGDTTITIVGNLTADPELR 20 (168)
T ss_dssp --CCCEEEEEEEESSSCCCE
T ss_pred CCccCEEEEEEEECCCCEEE
Confidence 66789999999999999873
No 190
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=26.78 E-value=83 Score=17.09 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=27.2
Q ss_pred EEeeCCCCchhhhhhhhhhhhCCCCcceeEEe
Q 034866 23 VFSVPEAAPFTVVLKFAAEEFKVPPQTSAIIT 54 (80)
Q Consensus 23 vlsVPE~aPFtAVlkfaAEeFkv~~~TsAiIT 54 (80)
.+.|++++....+-+-.+++.++|+..--++-
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 46889999999999999999999998776665
No 191
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=26.33 E-value=27 Score=20.56 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=9.6
Q ss_pred eEEecCCcccC
Q 034866 51 AIITNDGVGIN 61 (80)
Q Consensus 51 AiITndGiGIN 61 (80)
..|.|+|.||+
T Consensus 77 i~V~D~G~g~~ 87 (145)
T 1th8_A 77 LTVRDEGVGIP 87 (145)
T ss_dssp EEEEECSSCCS
T ss_pred EEEEECCCCcC
Confidence 55799999998
No 192
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=26.17 E-value=29 Score=24.30 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.2
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
-|..|+|||.||.+..
T Consensus 67 g~i~V~DnGrGIp~~~ 82 (220)
T 4duh_A 67 NSVSVQDDGRGIPTGI 82 (220)
T ss_dssp SCEEEEECSSCCCCSE
T ss_pred CcEEEEECCcCccccc
Confidence 4677899999998764
No 193
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=26.04 E-value=78 Score=20.20 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=29.8
Q ss_pred CCCCCceeEEeeCCCCchhhhhhhhhhhhCCCC
Q 034866 15 SDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPP 47 (80)
Q Consensus 15 sdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~ 47 (80)
..+.-|||.|.|-..+.=..|++=|-|.|++..
T Consensus 19 L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~ 51 (116)
T 1wxa_A 19 LKPNIPYKTILLSTTDTADFAVAESLEKYGLEK 51 (116)
T ss_dssp TCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSS
T ss_pred ccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCC
Confidence 346689999999999999999999999999965
No 194
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=26.01 E-value=29 Score=23.10 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=29.7
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
|...+=...|++.+|+++++++....|=|+.-.|.=-+.||
T Consensus 224 ~~~~~K~~al~~l~~~lgi~~~e~i~~GDs~NDi~m~~~ag 264 (304)
T 3l7y_A 224 TKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAK 264 (304)
T ss_dssp ETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHCT
T ss_pred cCCCCHHHHHHHHHHHhCcCHHHEEEECCCHHHHHHHHhcC
Confidence 55555566889999999999999888876655554444454
No 195
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=25.47 E-value=33 Score=23.48 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.1
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
-+.-|+|||.||....
T Consensus 63 g~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 63 NWIKVTDNGRGIPVDI 78 (198)
T ss_dssp GEEEEEECSSCCCCSB
T ss_pred CeEEEEECCCCccccc
Confidence 3778899999998764
No 196
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.40 E-value=1.1e+02 Score=18.09 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=31.9
Q ss_pred EEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE
Q 034866 9 FKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 9 FKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
++|++.. ....|.-+.|+.++....+-+-.+++.+||+..--+|
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi 51 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM 51 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 3444432 3567743689999999888888899999998765555
No 197
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=24.94 E-value=21 Score=28.60 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=13.4
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
....|+|||+||++..
T Consensus 74 ~~I~I~DnGiGMt~ed 89 (559)
T 1y4s_A 74 RTLTISDNGVGMTRDE 89 (559)
T ss_dssp TEEEEEECSSCCCHHH
T ss_pred cEEEEEECCCCCCHHH
Confidence 3578899999999876
No 198
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=24.79 E-value=66 Score=18.64 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE
Q 034866 18 KLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 18 klP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
...|.+..|+.++....+-+-.+++.+||+..--+|
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 456753389999999988888899999999887776
No 199
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=24.78 E-value=46 Score=24.33 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=31.7
Q ss_pred EEEEecCCCCCceeEEeeCCC-CchhhhhhhhhhhhCCCCcceeEEecC
Q 034866 9 FKVTLTSDPKLPFKVFSVPEA-APFTVVLKFAAEEFKVPPQTSAIITND 56 (80)
Q Consensus 9 FKItltsdpklP~kvlsVPE~-aPFtAVlkfaAEeFkv~~~TsAiITnd 56 (80)
-.|.|..|-+.=-.+=...-. --.|++.+-|||++++|+....++..|
T Consensus 26 a~v~i~~DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi~~e~V~v~~~D 74 (330)
T 3hrd_B 26 AFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGD 74 (330)
T ss_dssp EEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESB
T ss_pred EEEEEeCCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecC
Confidence 355666666542222222222 268999999999999999998777544
No 200
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=24.75 E-value=44 Score=22.11 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=31.3
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|...+=...+++.++++++++.....|-|+.-.|.--+.||
T Consensus 193 ~~~~~~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~ag 234 (282)
T 1rkq_A 193 LDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAG 234 (282)
T ss_dssp EETTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSS
T ss_pred cCCCCCCHHHHHHHHHHhCCCHHHEEEECCcHHHHHHHHHCC
Confidence 567777778899999999999988888876655444444444
No 201
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.69 E-value=1.1e+02 Score=17.90 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=33.3
Q ss_pred eEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEE
Q 034866 6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAII 53 (80)
Q Consensus 6 KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI 53 (80)
.++++|.+. ...|. +.|++++....+-+-.+++.+||+..--+|
T Consensus 17 ~~~i~Vk~~---g~~~~-i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 17 LVDLKIIWN---KTKHD-VKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp CEEEEEEET---TEEEE-EEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred eEEEEEEEC---CEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 455555532 44664 689999999999889999999999876665
No 202
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=24.69 E-value=17 Score=21.90 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=30.6
Q ss_pred CCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034866 27 PEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI 68 (80)
Q Consensus 27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~ 68 (80)
...-|-...++.++++++ ++.+..|-|.-.+|-..+.||-
T Consensus 125 ~~~Kp~~~~~~~~~~~~~--~~~~~~vGD~~~Di~~a~~aG~ 164 (201)
T 2w43_A 125 KEYKPSPKVYKYFLDSIG--AKEAFLVSSNAFDVIGAKNAGM 164 (201)
T ss_dssp TCCTTCHHHHHHHHHHHT--CSCCEEEESCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHhcC--CCcEEEEeCCHHHhHHHHHCCC
Confidence 334577788899999999 6677778777777777777774
No 203
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=23.64 E-value=1.4e+02 Score=18.46 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=37.6
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEec
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITN 55 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITn 55 (80)
+.|+++|+-.+.+ +++. +.||.+..-..+-.--++..++|+..--+|-.
T Consensus 5 ~~v~l~V~~~~~~-~~~e-~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 5 EVYDLEITTNATD-FPME-KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEEEESSCC-SCEE-EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred CEEEEEEEECCCC-ccEE-EEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 4677777765444 4554 58999999999988999999999988777654
No 204
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Probab=23.58 E-value=91 Score=19.68 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=27.2
Q ss_pred hhhhhCCCCcceeEEecCCccc-----Cccc-------ccceeeeeeeee
Q 034866 39 AAEEFKVPPQTSAIITNDGVGI-----NPQQ-------SAGILFIFLNFV 76 (80)
Q Consensus 39 aAEeFkv~~~TsAiITndGiGI-----NP~Q-------tAG~VFlkhgf~ 76 (80)
..+.++++.+..-+.|.||.-+ .|.. ....|.+=||+-
T Consensus 19 ~~~~~~~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~ 68 (377)
T 1k8q_A 19 MITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLL 68 (377)
T ss_dssp HHHHTTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTT
T ss_pred HHHHcCCCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCC
Confidence 4567888888888999999653 3332 445688889974
No 205
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=23.51 E-value=57 Score=18.46 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCC
Q 034866 23 VFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDG 57 (80)
Q Consensus 23 vlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndG 57 (80)
+.+|+++++...+++...+. + ..++.|.++|
T Consensus 14 ~~~v~~~~~~~~a~~~~~~~-~---~~~~~Vvd~~ 44 (133)
T 2ef7_A 14 VISVTKDAKLNDIAKVMTEK-N---IGSVIVVDGN 44 (133)
T ss_dssp CCEEETTCBHHHHHHHHHHH-T---CSEEEEEETT
T ss_pred CEEECCCCcHHHHHHHHHhc-C---CCEEEEEECC
Confidence 56788888888888776543 2 3456677765
No 206
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=23.31 E-value=1.1e+02 Score=21.38 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=35.0
Q ss_pred EEEEEEe--cCCCCCceeEEeeCCCC-------chhhhhhhhhhhhCCCCc--ce-eEEecCCcccC
Q 034866 7 VSFKVTL--TSDPKLPFKVFSVPEAA-------PFTVVLKFAAEEFKVPPQ--TS-AIITNDGVGIN 61 (80)
Q Consensus 7 VtFKItl--tsdpklP~kvlsVPE~a-------PFtAVlkfaAEeFkv~~~--Ts-AiITndGiGIN 61 (80)
-||.+|- ...|..||||-+.-.+. -+.-+++=+++.|+++.. .+ .++-.||..|+
T Consensus 50 ~tft~te~~E~~~~KPfKV~d~~Rs~KkGV~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVd 116 (145)
T 1ibx_B 50 KTFTVTESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVD 116 (145)
T ss_dssp -------CCSCSSCCCCBCBCSSCCSBCCCCCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCS
T ss_pred CcccCCCcccccCCccEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEe
Confidence 3555544 45788999998765442 355677789999999662 44 55578999984
No 207
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=22.15 E-value=1.1e+02 Score=16.68 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=33.4
Q ss_pred EeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 24 FSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 24 lsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+.|..+++...+-+--+++.++|+..--+|- +|-=+.+.+|-.
T Consensus 18 ~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~ 60 (79)
T 2uyz_B 18 FKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPK 60 (79)
T ss_dssp EEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHH
T ss_pred EEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHH
Confidence 5788899999999999999999998765544 566666666644
No 208
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=21.97 E-value=26 Score=28.47 Aligned_cols=16 Identities=25% Similarity=0.640 Sum_probs=13.4
Q ss_pred ceeEEecCCcccCccc
Q 034866 49 TSAIITNDGVGINPQQ 64 (80)
Q Consensus 49 TsAiITndGiGINP~Q 64 (80)
....|+|||+||+...
T Consensus 74 ~~I~I~DnGiGMt~ed 89 (624)
T 2ioq_A 74 RTLTISDNGVGMTRDE 89 (624)
T ss_dssp TEEEEEECSCCCCHHH
T ss_pred cEEEEEECCCCCCHHH
Confidence 3578899999999876
No 209
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=21.89 E-value=41 Score=23.76 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=14.0
Q ss_pred cceeEEecCCcccCccc
Q 034866 48 QTSAIITNDGVGINPQQ 64 (80)
Q Consensus 48 ~TsAiITndGiGINP~Q 64 (80)
.-|..|+|||.||.+..
T Consensus 71 ~g~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 71 DGSLTVQDHGRGMPTGM 87 (226)
T ss_dssp TSCEEEEECSSCCCCSB
T ss_pred CCeEEEEEcCCCccccc
Confidence 34788899999998875
No 210
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=21.88 E-value=19 Score=26.16 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred ceEEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeee
Q 034866 5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLN 74 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhg 74 (80)
.+++.|+. ..+..+. +.|...+||.-+.+.=||..+++... ..-+=||-=|+|.||.-..=|+-|
T Consensus 29 ~~i~lkv~-~~~~~~~---~~i~~~~~~~~l~~~y~~~~g~~~~~-~~f~f~G~~i~~~~Tp~~l~med~ 93 (389)
T 4da1_A 29 THINLKVS-DGSSEIF---FKIKKTTPLRRLMEAFAKRQGKEMDS-LRFLYDGIRIQADQAPEDLDMEDN 93 (389)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CcEEEEEe-cCCcEEE---EEECCCChHHHHHHHHHHHhCCCcce-EEEEECCEEcCCCCCHHHcCCCCC
Confidence 45666764 2333344 55689999999999999999998664 444677999999998766555444
No 211
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=21.86 E-value=23 Score=26.83 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=12.7
Q ss_pred eeEEecCCcccCccc
Q 034866 50 SAIITNDGVGINPQQ 64 (80)
Q Consensus 50 sAiITndGiGINP~Q 64 (80)
...|.|+|+|++.+.
T Consensus 131 tLtI~DNGiGMTkee 145 (272)
T 3ied_A 131 TLTITDNGIGMDKSE 145 (272)
T ss_dssp EEEEEECSCCCCHHH
T ss_pred EEEEEeCCCCCCHHH
Confidence 478899999998875
No 212
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=21.78 E-value=72 Score=20.09 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=15.7
Q ss_pred ceEEEEEEecCCCCCceeEEe
Q 034866 5 GKVSFKVTLTSDPKLPFKVFS 25 (80)
Q Consensus 5 ~KVtFKItltsdpklP~kvls 25 (80)
+..+++|+..+|.++-|||=+
T Consensus 17 ~~~~l~L~N~t~~~vaFKVKt 37 (109)
T 1row_A 17 VSSTHKLVNGGAEKIVFKIKS 37 (109)
T ss_dssp EEEEEEEEECSSSCEEEEEEE
T ss_pred CeEEEEEEcCCCCeEEEEEEe
Confidence 456778888888888888743
No 213
>3n6m_A RNA-dependent RNA polymerase; EV71, RDRP, GTP, transferase; HET: GTP; 2.50A {Human enterovirus 71} SCOP: e.8.1.4 PDB: 3n6l_A* 3n6n_A*
Probab=21.21 E-value=77 Score=24.37 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=29.2
Q ss_pred eEEeeCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccceeeeeeeeee
Q 034866 22 KVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIFLNFVS 77 (80)
Q Consensus 22 kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkhgf~~ 77 (80)
.++++|+.--...+.++.+ ++|+....+ +-.-.+.|..--+-.||||||+-
T Consensus 331 ~i~s~~~~~~~~~l~~~~~-~~Gl~~t~~----dKt~~~~~~~~~~l~FLkR~f~~ 381 (462)
T 3n6m_A 331 VLASYPFPIDCLELAKTGK-EYGLTMTPA----DKSPCFNEVNWDNATFLKRGFLP 381 (462)
T ss_dssp EEEEESSCCCHHHHHHHHH-HTTCEEEES----SSSSSCSCCCTTTCCBTTBEEEE
T ss_pred eEEEeCcccCHHHHHHHHH-HcCceechh----hccCCCCCccccCCeEeCcceee
Confidence 4678888654444444443 577643221 22233555444577899999973
No 214
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=21.07 E-value=43 Score=21.93 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=30.7
Q ss_pred eCCCCchhhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 26 VPEAAPFTVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
+|...+=...+++.++++++++..+..|=|+.-.|.-.+.||
T Consensus 185 ~~~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~ag 226 (268)
T 1nf2_A 185 VPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAG 226 (268)
T ss_dssp ECTTCCHHHHHHHHHHHHTCCGGGEEEEECSHHHHHHHTTCS
T ss_pred eCCCCChHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHHcC
Confidence 466666677899999999999988888866654444444444
No 215
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=20.86 E-value=42 Score=22.10 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=26.0
Q ss_pred hhhhhhhhhhhCCCCcceeEEecCCcccCcccccc
Q 034866 33 TVVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG 67 (80)
Q Consensus 33 tAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG 67 (80)
...+++.++++++++..+..|=|..-.|.-.+.||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~GD~~nD~~m~~~ag 252 (288)
T 1nrw_A 218 GQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAG 252 (288)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHSS
T ss_pred HHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcC
Confidence 34488899999999999888877665555555555
No 216
>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*
Probab=20.81 E-value=1.2e+02 Score=18.31 Aligned_cols=29 Identities=28% Similarity=0.206 Sum_probs=22.1
Q ss_pred eeEEeeCCCCchhhhhhhhhhhhCCCCcce
Q 034866 21 FKVFSVPEAAPFTVVLKFAAEEFKVPPQTS 50 (80)
Q Consensus 21 ~kvlsVPE~aPFtAVlkfaAEeFkv~~~Ts 50 (80)
+++..-| ..|++.-++.+.++.+++-+.-
T Consensus 3 ~~Ly~~~-~sp~~~~v~~~L~~~gi~~e~~ 31 (211)
T 1gnw_A 3 IKVFGHP-ASIATRRVLIALHEKNLDFELV 31 (211)
T ss_dssp EEEEECT-TCHHHHHHHHHHHHTTCCCEEE
T ss_pred eEEEeCC-CCcchHHHHHHHHhcCCCcEEE
Confidence 4555555 4589999999999999987654
No 217
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=20.35 E-value=1.2e+02 Score=16.59 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=34.1
Q ss_pred EEEEEEecCCCCCceeEEeeCCCCchhhhhhhhhhhhCCCCcceeEEe
Q 034866 7 VSFKVTLTSDPKLPFKVFSVPEAAPFTVVLKFAAEEFKVPPQTSAIIT 54 (80)
Q Consensus 7 VtFKItltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiIT 54 (80)
-+++|++.+-....| .+.|+.+.....+-+-.+++.++|+..--+|-
T Consensus 11 ~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred CcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 345555554334556 45889998888888889999999988766654
Done!