Query 034867
Match_columns 80
No_of_seqs 84 out of 86
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 07:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2288 Galactosyltransferases 99.9 4.1E-24 8.8E-29 165.4 3.9 59 1-63 198-259 (274)
2 PLN03193 beta-1,3-galactosyltr 99.9 2.7E-23 5.8E-28 166.2 3.4 61 1-66 328-398 (408)
3 PLN03133 beta-1,3-galactosyltr 96.6 0.00098 2.1E-08 56.7 1.6 38 1-38 567-609 (636)
4 PF06902 Fer4_19: Divergent 4F 40.7 22 0.00047 22.0 1.7 52 15-67 3-57 (64)
5 KOG4276 Predicted hormone rece 28.6 35 0.00075 24.4 1.3 24 19-47 55-78 (113)
6 PF13908 Shisa: Wnt and FGF in 27.3 34 0.00074 23.7 1.1 36 10-46 13-54 (179)
7 KOG3491 Predicted membrane pro 25.2 14 0.00031 24.1 -1.0 18 3-20 31-48 (65)
8 PF14550 Peptidase_U35_2: Puta 24.5 45 0.00097 23.3 1.3 17 4-20 81-97 (122)
9 cd00307 RuBisCO_small_like Rib 23.8 62 0.0014 21.3 1.8 35 17-66 19-56 (84)
10 PF01318 Bromo_coat: Bromoviru 22.2 49 0.0011 25.4 1.2 22 1-22 156-177 (188)
11 KOG3573 Caspase, apoptotic cys 21.8 31 0.00068 25.8 0.1 24 2-25 232-255 (300)
No 1
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.1e-24 Score=165.37 Aligned_cols=59 Identities=29% Similarity=0.462 Sum_probs=51.7
Q ss_pred CCCccccchheeeeeeecceecCCccccCCC---CCceEEEeeCCcccCCcccccChhhhhhhhhh
Q 034867 1 MFSNEDVTIGSWMLAMNVHHEDNRAICDPRC---TSTSIAVWDIPKCSGNTIFITCPAVIMFLIIT 63 (80)
Q Consensus 1 myAnEDVSlGSWmigLdV~HiDdr~lCC~sc---~~~~iAv~D~~kCSGi~~~~C~~~~rm~~v~~ 63 (80)
+|+||||||||||+||||+||||+++||+.| .....++|+.|+|||+ |+|++||+++|-
T Consensus 198 ~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~~~~~kcsgl----C~~~~rm~~~h~ 259 (274)
T KOG2288|consen 198 KYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAASFDWKCSGL----CKSEDRMLEVHK 259 (274)
T ss_pred hhccCCcccceeeeeeeeeEecCCcccccchhhhccceeeeeeccccccc----CchHHHHhHHHH
Confidence 6999999999999999999999999999999 4334444444599999 999999999986
No 2
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.87 E-value=2.7e-23 Score=166.21 Aligned_cols=61 Identities=34% Similarity=0.744 Sum_probs=56.1
Q ss_pred CCCccccchheeeeeeecceecCCcccc---CCCC------CceEEEeeCCcccCCcccccChhhhhhhhhh-hhh
Q 034867 1 MFSNEDVTIGSWMLAMNVHHEDNRAICD---PRCT------STSIAVWDIPKCSGNTIFITCPAVIMFLIIT-CPA 66 (80)
Q Consensus 1 myAnEDVSlGSWmigLdV~HiDdr~lCC---~sc~------~~~iAv~D~~kCSGi~~~~C~~~~rm~~v~~-cp~ 66 (80)
+|++|||++|+||+||+|+||||++||| |+|+ +.|+||||| +|||| |+|++||+++|. |+.
T Consensus 328 ~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~-~csg~----c~~~~~~~~~h~~c~~ 398 (408)
T PLN03193 328 KYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDW-SCSGI----CRSADRIKEVHRRCGE 398 (408)
T ss_pred ccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecc-cCccc----CCHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999 7897 468999999 99999 999999999874 653
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=96.59 E-value=0.00098 Score=56.70 Aligned_cols=38 Identities=29% Similarity=0.622 Sum_probs=33.3
Q ss_pred CCCccccchheee-----eeeecceecCCccccCCCCCceEEE
Q 034867 1 MFSNEDVTIGSWM-----LAMNVHHEDNRAICDPRCTSTSIAV 38 (80)
Q Consensus 1 myAnEDVSlGSWm-----igLdV~HiDdr~lCC~sc~~~~iAv 38 (80)
+|..|||.+|.|+ +|+.|+|+++.++|+..|...-|.+
T Consensus 567 ~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~ 609 (636)
T PLN03133 567 MFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVA 609 (636)
T ss_pred cCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEE
Confidence 5789999999997 5999999999999999998766543
No 4
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=40.67 E-value=22 Score=21.99 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=33.7
Q ss_pred eeecceecCCcccc--CCCCCceEEEeeCCcccCCcccccC-hhhhhhhhhhhhhH
Q 034867 15 AMNVHHEDNRAICD--PRCTSTSIAVWDIPKCSGNTIFITC-PAVIMFLIITCPAV 67 (80)
Q Consensus 15 gLdV~HiDdr~lCC--~sc~~~~iAv~D~~kCSGi~~~~C~-~~~rm~~v~~cp~~ 67 (80)
|-+++-.+|+.+|. ..|..+.=.|||...- |...-.=. ..+.++.+..||.-
T Consensus 3 g~~i~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v~~d~a~~~~v~~~v~~CPSG 57 (64)
T PF06902_consen 3 GPDITVTWDRERCIHAGFCVRGAPEVFDQDDE-PWVSPDEASAEEVREAVDRCPSG 57 (64)
T ss_pred CCcEEEEECcCcccchhhhhcCCCCcccCCCC-CcCCcCccCHHHHHHHHHcCCcc
Confidence 34566789999999 4698888899998555 54111112 23344458889963
No 5
>KOG4276 consensus Predicted hormone receptor interactor [General function prediction only]
Probab=28.58 E-value=35 Score=24.37 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=17.1
Q ss_pred ceecCCccccCCCCCceEEEeeCCcccCC
Q 034867 19 HHEDNRAICDPRCTSTSIAVWDIPKCSGN 47 (80)
Q Consensus 19 ~HiDdr~lCC~sc~~~~iAv~D~~kCSGi 47 (80)
.|+||..|| ++++-|.|-+ .|.+-
T Consensus 55 vH~DD~sl~----epGstAtWpi-~~a~~ 78 (113)
T KOG4276|consen 55 VHVDDKSLC----EPGSTATWPI-TAAND 78 (113)
T ss_pred EEecccccc----CCCccccccc-cCccc
Confidence 599998886 5567777876 55443
No 6
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=27.29 E-value=34 Score=23.68 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=26.0
Q ss_pred heeeeeeecceecCCccccCCCCC-----c-eEEEeeCCcccC
Q 034867 10 GSWMLAMNVHHEDNRAICDPRCTS-----T-SIAVWDIPKCSG 46 (80)
Q Consensus 10 GSWmigLdV~HiDdr~lCC~sc~~-----~-~iAv~D~~kCSG 46 (80)
|.|--|++=.. +|-.+||.+|.. . .-+.||...|..
T Consensus 13 g~~~~~F~C~~-~~~~~CCG~C~~ryCC~~~~~~~~~q~~C~~ 54 (179)
T PF13908_consen 13 GQWDPGFNCPE-GDFTFCCGTCSLRYCCSDLKRARLDQGSCDN 54 (179)
T ss_pred CCCccCCcCCC-cCcceecCCccCcchhhhhhhceeccccccc
Confidence 77877776543 377899998884 2 335689988886
No 7
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=25.19 E-value=14 Score=24.15 Aligned_cols=18 Identities=22% Similarity=0.636 Sum_probs=14.2
Q ss_pred Cccccchheeeeeeecce
Q 034867 3 SNEDVTIGSWMLAMNVHH 20 (80)
Q Consensus 3 AnEDVSlGSWmigLdV~H 20 (80)
+.||-++|-|+|||=|-.
T Consensus 31 ~e~kypvgPwLlglFvFV 48 (65)
T KOG3491|consen 31 KEKKYPVGPWLLGLFVFV 48 (65)
T ss_pred ccccCCcchHHHHHHHHH
Confidence 357889999999987643
No 8
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=24.53 E-value=45 Score=23.27 Aligned_cols=17 Identities=18% Similarity=0.724 Sum_probs=14.0
Q ss_pred ccccchheeeeeeecce
Q 034867 4 NEDVTIGSWMLAMNVHH 20 (80)
Q Consensus 4 nEDVSlGSWmigLdV~H 20 (80)
.+++.-|+|++++.++-
T Consensus 81 g~~i~~GtWv~~~k~~d 97 (122)
T PF14550_consen 81 GETIPKGTWVVGVKITD 97 (122)
T ss_pred CeeecceEEEEEEEecC
Confidence 46788999999988765
No 9
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=23.83 E-value=62 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=25.0
Q ss_pred ecceecCCccccCCCCCceEEEeeCCcccCCccccc---Chhhhhhhhhhhhh
Q 034867 17 NVHHEDNRAICDPRCTSTSIAVWDIPKCSGNTIFIT---CPAVIMFLIITCPA 66 (80)
Q Consensus 17 dV~HiDdr~lCC~sc~~~~iAv~D~~kCSGi~~~~C---~~~~rm~~v~~cp~ 66 (80)
.+||.|+|++- .=++++-|+| ++.+-|.++-+|-+
T Consensus 19 ~iE~~d~~ryw---------------t~w~lp~f~~~~~~~~~Vl~el~~c~~ 56 (84)
T cd00307 19 GLEHADARRFR---------------TSSWQSCGPIEGRSEAQVLAALEACLA 56 (84)
T ss_pred EEEECCCCccH---------------hhhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 45788887752 3355556667 78899999999954
No 10
>PF01318 Bromo_coat: Bromovirus coat protein; InterPro: IPR002009 This family consists of Bromovirus coat proteins. RNA-protein interactions stabilise many viruses and also the nucleoprotein cores of enveloped animal viruses (e.g. retroviruses). The nucleoprotein particles are frequently pleomorphic and generally unstable due to the lack of strong protein-protein interactions in their capsids. The structure is known for Cowpea chlorotic mottle virus (CCMV) []. It shows novel quaternary structure interactions based on interwoven carboxyterminal polypeptides that extend from canonical capsid beta-barrel subunits. Additional particle stability is provided by intercapsomere contacts between metal ion mediated carboxyl cages and by protein interactions with regions of ordered RNA. ; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1YC6_V 1JS9_A 1ZA7_B 1CWP_C.
Probab=22.16 E-value=49 Score=25.36 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=17.4
Q ss_pred CCCccccchheeeeeeecceec
Q 034867 1 MFSNEDVTIGSWMLAMNVHHED 22 (80)
Q Consensus 1 myAnEDVSlGSWmigLdV~HiD 22 (80)
.|+.++++-|+=.+-|+|||+-
T Consensus 156 lYs~~alaa~~ivvhlEVEHv~ 177 (188)
T PF01318_consen 156 LYSAAALAAKDIVVHLEVEHVR 177 (188)
T ss_dssp EEESS-B-TTSEEEEEEEEEE-
T ss_pred EeehhccccCceEEEEEEeecc
Confidence 3788999999999999999984
No 11
>KOG3573 consensus Caspase, apoptotic cysteine protease [Cell cycle control, cell division, chromosome partitioning]
Probab=21.78 E-value=31 Score=25.80 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=17.7
Q ss_pred CCccccchheeeeeeecceecCCc
Q 034867 2 FSNEDVTIGSWMLAMNVHHEDNRA 25 (80)
Q Consensus 2 yAnEDVSlGSWmigLdV~HiDdr~ 25 (80)
|+..|.+-|||+|.==.++.+.+.
T Consensus 232 ~s~R~~~~gsw~Iq~Lc~~~~~~~ 255 (300)
T KOG3573|consen 232 VSWRDPTKGSWFIQSLCEVLQEYA 255 (300)
T ss_pred eeeecCCCceeeHHHHHHHHHHhc
Confidence 567889999999986555555543
Done!