Query 034867
Match_columns 80
No_of_seqs 84 out of 86
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 11:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wqb_A Aptotoxin VII; spider'S 64.9 1.6 5.6E-05 24.2 0.3 13 35-47 10-22 (32)
2 1sc3_B Interleukin-1 beta conv 36.9 6 0.0002 24.4 -0.4 18 2-19 22-39 (88)
3 3db3_A E3 ubiquitin-protein li 33.7 11 0.00038 27.0 0.5 15 5-19 20-34 (161)
4 2ql9_B Caspase-7; cysteine pro 30.6 7.8 0.00027 23.9 -0.6 20 2-21 24-43 (97)
5 1qtn_B Caspase-8; apoptosis, d 30.2 8 0.00027 24.0 -0.6 15 2-16 26-40 (95)
6 1pyo_B Caspase-2; apoptosis, c 29.2 8.6 0.00029 24.2 -0.6 21 2-22 28-48 (105)
7 2dko_B Caspase-3; low barrier 29.1 8.6 0.00029 24.1 -0.6 18 2-19 30-47 (103)
8 3rjm_B Caspase-2; caspase-2, c 29.1 8.7 0.0003 25.0 -0.6 20 2-21 29-48 (117)
9 2xzd_B Caspase-3; hydrolase-pr 25.7 12 0.00041 24.4 -0.4 20 2-21 29-48 (118)
10 1yc6_A Coat protein; structura 24.3 28 0.00097 24.9 1.3 22 1-22 121-142 (154)
11 3ask_A E3 ubiquitin-protein li 24.0 23 0.00079 25.9 0.8 11 6-16 13-23 (226)
12 1js9_A Coat protein, capsid pr 22.6 31 0.001 25.4 1.2 22 1-22 156-177 (189)
13 1za7_A Coat protein; mutant vi 22.0 33 0.0011 24.7 1.3 22 1-22 133-154 (165)
14 1cwp_A Coat protein, CCMV; bro 20.8 32 0.0011 25.3 1.0 22 1-22 158-179 (190)
No 1
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=64.91 E-value=1.6 Score=24.25 Aligned_cols=13 Identities=38% Similarity=0.920 Sum_probs=10.8
Q ss_pred eEEEeeCCcccCC
Q 034867 35 SIAVWDIPKCSGN 47 (80)
Q Consensus 35 ~iAv~D~~kCSGi 47 (80)
+..-|.||-|||+
T Consensus 10 acgpwewpccsgl 22 (32)
T 1wqb_A 10 ACGPWEWPCCSGL 22 (32)
T ss_dssp BCCSSSSCBCTTC
T ss_pred ccCCccCccccCc
Confidence 4456999999999
No 2
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=36.89 E-value=6 Score=24.36 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=12.7
Q ss_pred CCccccchheeeeeeecc
Q 034867 2 FSNEDVTIGSWMLAMNVH 19 (80)
Q Consensus 2 yAnEDVSlGSWmigLdV~ 19 (80)
++..|..-|||||--=.+
T Consensus 22 ~S~R~~~~GSwfIq~Lc~ 39 (88)
T 1sc3_B 22 VSWRHPTMGSVFIGRLIE 39 (88)
T ss_dssp CCCEETTTEEHHHHHHHH
T ss_pred EeeEcCCCCCHHHHHHHH
Confidence 466778889999864333
No 3
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=33.68 E-value=11 Score=26.97 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=11.5
Q ss_pred cccchheeeeeeecc
Q 034867 5 EDVTIGSWMLAMNVH 19 (80)
Q Consensus 5 EDVSlGSWmigLdV~ 19 (80)
.|+++||||=|-=|+
T Consensus 20 rD~~~GAWFEA~Iv~ 34 (161)
T 3db3_A 20 RDTNMGAWFEAQVVR 34 (161)
T ss_dssp ECTTTCCEEEEEEEE
T ss_pred eccCCCcceEEEEEE
Confidence 489999998775444
No 4
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=30.58 E-value=7.8 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=12.8
Q ss_pred CCccccchheeeeeeeccee
Q 034867 2 FSNEDVTIGSWMLAMNVHHE 21 (80)
Q Consensus 2 yAnEDVSlGSWmigLdV~Hi 21 (80)
++..|..-|||||--=++.+
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l 43 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSIL 43 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHH
T ss_pred EeeecCCCCCeeHHHHHHHH
Confidence 45567778999985444333
No 5
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=30.24 E-value=8 Score=23.95 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=10.7
Q ss_pred CCccccchheeeeee
Q 034867 2 FSNEDVTIGSWMLAM 16 (80)
Q Consensus 2 yAnEDVSlGSWmigL 16 (80)
++..|..-|||||--
T Consensus 26 ~S~R~~~~GSwfIq~ 40 (95)
T 1qtn_B 26 VSYRNPAEGTWYIQS 40 (95)
T ss_dssp CCEEETTTEEHHHHH
T ss_pred EEEecCCCCcHHHHH
Confidence 455677789999853
No 6
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=29.18 E-value=8.6 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=13.9
Q ss_pred CCccccchheeeeeeecceec
Q 034867 2 FSNEDVTIGSWMLAMNVHHED 22 (80)
Q Consensus 2 yAnEDVSlGSWmigLdV~HiD 22 (80)
++..|..-|||||--=.+.+.
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~ 48 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFS 48 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 455677889999865444443
No 7
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=29.09 E-value=8.6 Score=24.12 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=12.1
Q ss_pred CCccccchheeeeeeecc
Q 034867 2 FSNEDVTIGSWMLAMNVH 19 (80)
Q Consensus 2 yAnEDVSlGSWmigLdV~ 19 (80)
++..|..-|||||--=.+
T Consensus 30 vS~R~~~~GSwfIq~Lc~ 47 (103)
T 2dko_B 30 YSWRNSKDGSWFIQSLCA 47 (103)
T ss_dssp CCEEETTTEEHHHHHHHH
T ss_pred EeEEcCCCCCeeHHHHHH
Confidence 455677789999854333
No 8
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=29.08 E-value=8.7 Score=25.01 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=13.8
Q ss_pred CCccccchheeeeeeeccee
Q 034867 2 FSNEDVTIGSWMLAMNVHHE 21 (80)
Q Consensus 2 yAnEDVSlGSWmigLdV~Hi 21 (80)
++..|..-|||||--=++.+
T Consensus 29 vS~R~~~~GSwFIQ~Lc~vl 48 (117)
T 3rjm_B 29 AAMRNTKRGSWYIEALAQVF 48 (117)
T ss_dssp CCEEETTTEEHHHHHHHHHH
T ss_pred ECeeecCCCChHHHHHHHHH
Confidence 46677888999996444444
No 9
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=25.75 E-value=12 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=13.2
Q ss_pred CCccccchheeeeeeeccee
Q 034867 2 FSNEDVTIGSWMLAMNVHHE 21 (80)
Q Consensus 2 yAnEDVSlGSWmigLdV~Hi 21 (80)
++..|..-|||||--=.+.+
T Consensus 29 vS~R~~~~GSwFIQ~Lc~vl 48 (118)
T 2xzd_B 29 YSWRNSKDGSWFIQSLCAML 48 (118)
T ss_dssp CCCEETTTEEHHHHHHHHHH
T ss_pred EeeEeCCCCCccHHHHHHHH
Confidence 45667788999986444333
No 10
>1yc6_A Coat protein; structural transition, proteolysis, BMV, ALMV, symmetry, ASS icosahedral virus; 2.90A {Brome mosaic virus} SCOP: b.121.4.5
Probab=24.32 E-value=28 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.8
Q ss_pred CCCccccchheeeeeeecceec
Q 034867 1 MFSNEDVTIGSWMLAMNVHHED 22 (80)
Q Consensus 1 myAnEDVSlGSWmigLdV~HiD 22 (80)
.|+.++++-|+=.+-|+|||+-
T Consensus 121 lYs~~a~aa~~ivVhlEVEHv~ 142 (154)
T 1yc6_A 121 LYASEAVPAKAVVVHLEVEHVR 142 (154)
T ss_dssp EEESSCBCTTSEEEEEEEEEEC
T ss_pred EEehhhcccCceEEEEEEEecc
Confidence 3788999999999999999984
No 11
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=24.04 E-value=23 Score=25.94 Aligned_cols=11 Identities=36% Similarity=0.903 Sum_probs=6.6
Q ss_pred ccchheeeeee
Q 034867 6 DVTIGSWMLAM 16 (80)
Q Consensus 6 DVSlGSWmigL 16 (80)
|++.||||-|-
T Consensus 13 d~~~Gawfea~ 23 (226)
T 3ask_A 13 DTNMGAWFEAQ 23 (226)
T ss_dssp CTTTCCEEEEE
T ss_pred ecCCCceeEEE
Confidence 55666666553
No 12
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=22.64 E-value=31 Score=25.39 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.9
Q ss_pred CCCccccchheeeeeeecceec
Q 034867 1 MFSNEDVTIGSWMLAMNVHHED 22 (80)
Q Consensus 1 myAnEDVSlGSWmigLdV~HiD 22 (80)
.|+.++++-|+=.+-|+|||+-
T Consensus 156 lYs~~a~aa~~ivvhlEVEHv~ 177 (189)
T 1js9_A 156 LYASEAVPAKAVVVHLEVEHVR 177 (189)
T ss_dssp EECSSCBCTTSBCCEEEEEEEC
T ss_pred EEehhhcccCceEEEEEEeecc
Confidence 3889999999999999999984
No 13
>1za7_A Coat protein; mutant virus capsid structure, icosahedral particle, stablizing mutation, stable mutant, beta hexamer, beta barrel; 2.70A {Cowpea chlorotic mottle virus}
Probab=21.96 E-value=33 Score=24.74 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.8
Q ss_pred CCCccccchheeeeeeecceec
Q 034867 1 MFSNEDVTIGSWMLAMNVHHED 22 (80)
Q Consensus 1 myAnEDVSlGSWmigLdV~HiD 22 (80)
.|+.++++-|+=.+-|+|||+-
T Consensus 133 lYs~~a~aa~~ivVhlEVEHv~ 154 (165)
T 1za7_A 133 LYSSAALTEGDVIVHLEVEHVR 154 (165)
T ss_dssp EEESSCBCTTSEEEEEEEEEEC
T ss_pred EEehhhcccCceEEEEEEeecc
Confidence 3788999999999999999984
No 14
>1cwp_A Coat protein, CCMV; bromovirus, icosahedral virus, virus/RNA complex; 3.20A {Cowpea chlorotic mottle virus} SCOP: b.121.4.5
Probab=20.78 E-value=32 Score=25.28 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.8
Q ss_pred CCCccccchheeeeeeecceec
Q 034867 1 MFSNEDVTIGSWMLAMNVHHED 22 (80)
Q Consensus 1 myAnEDVSlGSWmigLdV~HiD 22 (80)
.|+.++++-|+=.+-|+|||+-
T Consensus 158 lYs~~a~aa~~ivvhlEVEHv~ 179 (190)
T 1cwp_A 158 LYSSAALTEGDVIVHLEVEHVR 179 (190)
T ss_dssp EEESSCCCEEEEEEEEEEEEEC
T ss_pred EEehhhcccCceEEEEEEeecc
Confidence 3788999999999999999984
Done!