Query 034867
Match_columns 80
No_of_seqs 84 out of 86
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 11:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034867.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034867hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ucva_ a.60.1.2 (A:) Ephrin t 16.9 9.2 0.00067 21.3 -0.7 16 3-18 4-19 (81)
2 d1w9ha1 c.55.3.10 (A:93-408) H 16.0 33 0.0024 22.4 1.8 28 12-46 89-116 (316)
3 d1q79a3 d.58.16.1 (A:365-498) 14.1 27 0.002 21.3 0.9 12 8-19 69-80 (134)
4 d1j5wa_ d.104.1.1 (A:) Glycyl- 13.8 30 0.0022 24.9 1.2 14 5-18 116-129 (281)
5 d1aopa2 d.58.36.1 (A:346-425) 13.6 32 0.0023 19.4 1.1 14 5-19 5-18 (80)
6 d2je8a2 b.1.4.1 (A:784-864) Be 12.6 16 0.0012 20.9 -0.5 9 72-80 40-48 (81)
7 d3d4ub1 g.9.1.3 (B:1-37) Carbo 12.4 19 0.0014 19.1 -0.2 16 49-70 7-22 (37)
8 d2q66a3 d.58.16.1 (A:352-529) 12.1 34 0.0025 22.0 1.0 10 10-19 111-120 (178)
9 d1ks6a_ g.7.1.3 (A:) TGF-beta 11.1 77 0.0056 19.8 2.5 20 22-41 17-45 (107)
10 d1jnra3 d.168.1.1 (A:257-401) 11.1 18 0.0013 23.6 -0.7 15 8-22 16-30 (145)
No 1
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.94 E-value=9.2 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.721 Sum_probs=12.7
Q ss_pred Cccccchheeeeeeec
Q 034867 3 SNEDVTIGSWMLAMNV 18 (80)
Q Consensus 3 AnEDVSlGSWmigLdV 18 (80)
++.|+||+-|+-.+..
T Consensus 4 ~~~~~sV~~WL~~lgL 19 (81)
T d1ucva_ 4 GSSGLTVGDWLDSIRM 19 (81)
T ss_dssp CCCCSBHHHHHHHTTC
T ss_pred CCCCCcHHHHHHHCcc
Confidence 6889999999876654
No 2
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.98 E-value=33 Score=22.37 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=19.2
Q ss_pred eeeeeecceecCCccccCCCCCceEEEeeCCcccC
Q 034867 12 WMLAMNVHHEDNRAICDPRCTSTSIAVWDIPKCSG 46 (80)
Q Consensus 12 WmigLdV~HiDdr~lCC~sc~~~~iAv~D~~kCSG 46 (80)
=+||+||.|.++.+. .++++|+|. ..+.
T Consensus 89 miIG~dv~h~~~~~~------~~~a~~~~~-~~~~ 116 (316)
T d1w9ha1 89 IIIGTGATRIDNVNL------FCFAMVFKK-DGTM 116 (316)
T ss_dssp EEEEEEEEESSSSEE------EEEEEEEET-TSCE
T ss_pred EEEEEEEecCCCCee------eEEEEEEcC-CCCE
Confidence 479999999776653 245678885 4443
No 3
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.07 E-value=27 Score=21.25 Aligned_cols=12 Identities=8% Similarity=0.371 Sum_probs=9.7
Q ss_pred chheeeeeeecc
Q 034867 8 TIGSWMLAMNVH 19 (80)
Q Consensus 8 SlGSWmigLdV~ 19 (80)
-.++|+|||+.+
T Consensus 69 ~~~~~fIGL~~~ 80 (134)
T d1q79a3 69 FRTMWVIGLVFK 80 (134)
T ss_dssp EEEEEEEEEEEC
T ss_pred eEEEEEEEEEec
Confidence 368999999874
No 4
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=13.83 E-value=30 Score=24.88 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.2
Q ss_pred cccchheeeeeeec
Q 034867 5 EDVTIGSWMLAMNV 18 (80)
Q Consensus 5 EDVSlGSWmigLdV 18 (80)
|--|+|||-||-+|
T Consensus 116 EsPtlGAwGlGWEV 129 (281)
T d1j5wa_ 116 ESPTLGAWGVGWEV 129 (281)
T ss_dssp EEGGGTEEEEEEEE
T ss_pred cCCcccceeeeeEE
Confidence 34689999998776
No 5
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=13.65 E-value=32 Score=19.38 Aligned_cols=14 Identities=14% Similarity=0.622 Sum_probs=10.0
Q ss_pred cccchheeeeeeecc
Q 034867 5 EDVTIGSWMLAMNVH 19 (80)
Q Consensus 5 EDVSlGSWmigLdV~ 19 (80)
|+.- |-|++|+.|+
T Consensus 5 ~~~d-G~~~~gl~v~ 18 (80)
T d1aopa2 5 KGID-DNWHLTLFIE 18 (80)
T ss_dssp ECST-TEEEEEECCG
T ss_pred CCCC-CCEEEEEEec
Confidence 4443 8899999764
No 6
>d2je8a2 b.1.4.1 (A:784-864) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=12.59 E-value=16 Score=20.90 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=6.4
Q ss_pred hhcccccCC
Q 034867 72 AFSKNYLDM 80 (80)
Q Consensus 72 ~~~~~~~~~ 80 (80)
.||.||.||
T Consensus 40 ~fSDN~FdL 48 (81)
T d2je8a2 40 RYSDNFFDL 48 (81)
T ss_dssp EESCCSEEE
T ss_pred eEecCeEEe
Confidence 478888764
No 7
>d3d4ub1 g.9.1.3 (B:1-37) Carboxypeptidase inhibitor {Tick (Rhipicephalus bursa) [TaxId: 67831]}
Probab=12.38 E-value=19 Score=19.06 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=11.2
Q ss_pred ccccChhhhhhhhhhhhhHHHH
Q 034867 49 IFITCPAVIMFLIITCPAVIRF 70 (80)
Q Consensus 49 ~~~C~~~~rm~~v~~cp~~~~~ 70 (80)
-|+|-|..| |||-.|.
T Consensus 7 gfgc~p~s~------cp~e~rl 22 (37)
T d3d4ub1 7 GFGCLPQSD------CPQEARL 22 (37)
T ss_dssp TCEEECGGG------SCGGGEE
T ss_pred CcCcCcccc------CCHhHee
Confidence 378887765 8887763
No 8
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.13 E-value=34 Score=21.98 Aligned_cols=10 Identities=0% Similarity=0.345 Sum_probs=8.6
Q ss_pred heeeeeeecc
Q 034867 10 GSWMLAMNVH 19 (80)
Q Consensus 10 GSWmigLdV~ 19 (80)
-+|+|||+++
T Consensus 111 t~~fIGL~~~ 120 (178)
T d2q66a3 111 STMYIGLDFN 120 (178)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEec
Confidence 4799999985
No 9
>d1ks6a_ g.7.1.3 (A:) TGF-beta type II receptor extracellular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.13 E-value=77 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=13.6
Q ss_pred cCCccccCCCC---------CceEEEeeC
Q 034867 22 DNRAICDPRCT---------STSIAVWDI 41 (80)
Q Consensus 22 Ddr~lCC~sc~---------~~~iAv~D~ 41 (80)
|+...|=+.|+ ..|||+|-.
T Consensus 17 ~~~~~C~snCsitSiCe~p~EvCVaiWRk 45 (107)
T d1ks6a_ 17 SNQDQCTSNCNITSICEKNNEVCAAVWRR 45 (107)
T ss_dssp CSCSSCBCCCCCCEECCSSSCCEEEEEEE
T ss_pred CCCCcCccCCceeeeeCCchHeEEEEEEE
Confidence 55566666655 468999974
No 10
>d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.12 E-value=18 Score=23.63 Aligned_cols=15 Identities=20% Similarity=0.756 Sum_probs=11.0
Q ss_pred chheeeeeeecceec
Q 034867 8 TIGSWMLAMNVHHED 22 (80)
Q Consensus 8 SlGSWmigLdV~HiD 22 (80)
-+|+||+++-..-++
T Consensus 16 PvGa~fl~~Ka~~~N 30 (145)
T d1jnra3 16 PVGAWFLFFKCKAKN 30 (145)
T ss_dssp CCHHHHHTSCCCEEC
T ss_pred cchHHHHhcCceeec
Confidence 478888888766654
Done!