Query 034868
Match_columns 80
No_of_seqs 125 out of 863
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 99.9 5.9E-29 2E-33 162.0 4.4 78 3-80 23-113 (113)
2 3izc_v 60S acidic ribosomal pr 99.9 6E-29 2.1E-33 160.4 4.4 78 3-80 22-106 (106)
3 3iz5_t 60S acidic ribosomal pr 99.9 1.8E-26 6.2E-31 149.7 3.8 78 3-80 27-110 (110)
4 3izc_t 60S acidic ribosomal pr 99.9 2.2E-26 7.5E-31 148.4 3.9 78 3-80 26-106 (106)
5 2lbf_B 60S acidic ribosomal pr 99.6 2.2E-15 7.4E-20 90.8 4.4 47 3-49 24-70 (70)
6 2lbf_A 60S acidic ribosomal pr 99.2 1.2E-11 4.1E-16 74.1 3.3 35 3-37 28-62 (69)
7 3a1y_A 50S ribosomal protein P 99.2 2.9E-11 9.8E-16 70.2 4.4 35 3-37 22-56 (58)
8 3u5i_q A0, L10E, 60S acidic ri 99.0 4E-11 1.4E-15 88.5 0.0 53 28-80 260-312 (312)
9 3iz5_s 60S acidic ribosomal pr 98.9 1E-10 3.5E-15 86.5 0.0 52 29-80 266-319 (319)
10 2zkr_g 60S acidic ribosomal pr 98.8 7.9E-11 2.7E-15 87.1 -3.8 54 27-80 261-317 (317)
11 3iz5_t 60S acidic ribosomal pr 97.1 0.00027 9.1E-09 45.3 2.9 30 2-32 10-39 (110)
12 3izc_t 60S acidic ribosomal pr 96.8 0.00086 3E-08 42.6 3.2 31 2-33 9-39 (106)
13 3j21_k Acidic ribosomal protei 88.5 0.087 3E-06 38.9 0.0 12 25-36 282-293 (339)
14 2lbf_A 60S acidic ribosomal pr 70.3 3.3 0.00011 23.9 2.4 30 2-32 11-40 (69)
15 1taf_A TFIID TBP associated fa 40.7 24 0.00081 20.2 2.7 25 2-26 6-31 (68)
16 2lpy_A Matrix protein P10; GAG 34.8 35 0.0012 21.8 3.0 24 2-25 13-36 (124)
17 2ftc_M Mitochondrial ribosomal 23.7 76 0.0026 19.3 3.1 27 11-37 5-31 (110)
18 1jr3_D DNA polymerase III, del 20.4 94 0.0032 21.3 3.4 34 2-36 150-183 (343)
19 1i4j_A 50S ribosomal protein L 20.3 95 0.0033 18.8 3.0 27 11-37 9-35 (110)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=99.95 E-value=5.9e-29 Score=162.02 Aligned_cols=78 Identities=67% Similarity=0.930 Sum_probs=36.1
Q ss_pred HhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHccccccccccCCCCCC------C---c----chhhhhhhhhhhhcc
Q 034868 3 SWVFGFAVGAEADDERIEFLLSEVKGKDITELIASGREKLASVPSGGAAA------A---P----AAEAKKEEKVEEKEE 69 (80)
Q Consensus 3 ~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~g~~~~~~~~~~g~aa------a---~----a~~~~~~~k~eeeEE 69 (80)
+++||+++||+|+++|+++|+++|+||||++||++|..+++++|++|+++ + + ++++++++|+|++||
T Consensus 23 I~~ILkAaGveVe~~~~~lf~~aL~gk~I~eLIa~G~~kl~~v~~gg~aa~a~a~a~a~~~~a~~a~~~~~e~k~ee~EE 102 (113)
T 3iz5_v 23 LTSILESVGCEIDNEKMELMLSQVKGKDITELLAAGREKFAAVPSGGGGVAVSAAAPAAGGAAAPAAESKKEEKVVEKEE 102 (113)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC-------------------------------------------
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhcCCCHHHHHHhhHHHhccCCCcccccccccccccccccccccchhhhhhhcccccc
Confidence 68999999999999999999999999999999999999998887766431 0 0 111233445567788
Q ss_pred cccCCCCCCCC
Q 034868 70 SDDDMGFSLFD 80 (80)
Q Consensus 70 ~ddDmgfgLFd 80 (80)
+||||||||||
T Consensus 103 sDdDmGFgLFD 113 (113)
T 3iz5_v 103 SDDDMGFSLFD 113 (113)
T ss_dssp -----------
T ss_pred cccccccCcCC
Confidence 99999999998
No 2
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=99.95 E-value=6e-29 Score=160.40 Aligned_cols=78 Identities=49% Similarity=0.719 Sum_probs=36.1
Q ss_pred HhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHccccccccccCCCCCCC-------cchhhhhhhhhhhhcccccCCC
Q 034868 3 SWVFGFAVGAEADDERIEFLLSEVKGKDITELIASGREKLASVPSGGAAAA-------PAAEAKKEEKVEEKEESDDDMG 75 (80)
Q Consensus 3 ~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~g~~~~~~~~~~g~aaa-------~a~~~~~~~k~eeeEE~ddDmg 75 (80)
+++||+++||+|+++|+++|+++|+||||++||++|..+++++|++|++++ +++++++++|+|++||+|||||
T Consensus 22 I~~ilkAaGveVe~~~~~~f~~aL~gkdI~eLIa~g~~klasv~sgg~a~aa~a~~a~~~~~~~~e~kee~~EEsdddmG 101 (106)
T 3izc_v 22 IKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEKLAAVPAAGPASAGGAAAASGDAAAEEEKEEEAAEESDDDMG 101 (106)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC-------------------------------------------
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHcCCCCHHHHHHhhhHHhccCCCccccccccccccccccccccccccccccccccccC
Confidence 579999999999999999999999999999999999999998877665311 1122344555667788999999
Q ss_pred CCCCC
Q 034868 76 FSLFD 80 (80)
Q Consensus 76 fgLFd 80 (80)
|||||
T Consensus 102 fgLFd 106 (106)
T 3izc_v 102 FGLFD 106 (106)
T ss_dssp -----
T ss_pred CCCCC
Confidence 99998
No 3
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=99.92 E-value=1.8e-26 Score=149.66 Aligned_cols=78 Identities=37% Similarity=0.448 Sum_probs=34.5
Q ss_pred HhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHccccccccccCC-----CCC-CCcchhhhhhhhhhhhcccccCCCC
Q 034868 3 SWVFGFAVGAEADDERIEFLLSEVKGKDITELIASGREKLASVPSG-----GAA-AAPAAEAKKEEKVEEKEESDDDMGF 76 (80)
Q Consensus 3 ~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~g~~~~~~~~~~-----g~a-aa~a~~~~~~~k~eeeEE~ddDmgf 76 (80)
+++||+++||+|+++|+++|+++|+||||++||++.+...+..+++ +++ +++++++++++|+|++||+||||||
T Consensus 27 I~~ilkAaGveVe~~~~~lfakaL~gknI~eLI~sv~~gg~a~~a~a~~a~~~~~~~~a~~~~~e~k~ee~EEsddDmGf 106 (110)
T 3iz5_t 27 IATVVKAAGIKVEAYWPALFAKLLEKRSVDDLILSVGSGGGGAPAAAAAAPAAGGAAAAEEKKEEKKEEAKEESDDDMGF 106 (110)
T ss_dssp HHHHHHHHTCCCCSHHHHHHHHHHTTCCHHHHHTCCC-------------------------------------------
T ss_pred HHHHHHHhCCcccHHHHHHHHHHcCCCCHHHHHhcCCCccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 5789999999999999999999999999999998743321111111 111 1112233445556677889999999
Q ss_pred CCCC
Q 034868 77 SLFD 80 (80)
Q Consensus 77 gLFd 80 (80)
||||
T Consensus 107 gLFd 110 (110)
T 3iz5_t 107 SLFD 110 (110)
T ss_dssp ----
T ss_pred ccCC
Confidence 9998
No 4
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=99.92 E-value=2.2e-26 Score=148.40 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=34.7
Q ss_pred HhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHcccccccccc-CCCCC-CC-cchhhhhhhhhhhhcccccCCCCCCC
Q 034868 3 SWVFGFAVGAEADDERIEFLLSEVKGKDITELIASGREKLASVP-SGGAA-AA-PAAEAKKEEKVEEKEESDDDMGFSLF 79 (80)
Q Consensus 3 ~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~g~~~~~~~~-~~g~a-aa-~a~~~~~~~k~eeeEE~ddDmgfgLF 79 (80)
+++||+++||+|+++|+.+|+++|+||||++||++.++..++.+ +++++ ++ +++++++++|++++||+|||||||||
T Consensus 26 I~~ilkAaGveVe~~~~~lfa~aL~gknI~eLI~~~~ag~~~~aa~a~~a~~~~~a~~~~~~~kee~~EEsddDmGfgLF 105 (106)
T 3izc_t 26 LLTLTNAANVPDENIWADIFAKALDGQNLKDLLVNFSAGAAAPAGVAGGVAGGEAGEAEAEKEEEEAKEESDDDMGFGLF 105 (106)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHTTCCC-------------------------------------------
T ss_pred HHHHHHHcCCcccHHHHHHHHHHhcCCCHHHHHHhccCcCcccccccccccccccccchhhhhhcccccccccccccCcC
Confidence 57899999999999999999999999999999997433211111 11111 11 12233444556677889999999999
Q ss_pred C
Q 034868 80 D 80 (80)
Q Consensus 80 d 80 (80)
|
T Consensus 106 d 106 (106)
T 3izc_t 106 D 106 (106)
T ss_dssp -
T ss_pred C
Confidence 8
No 5
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=99.56 E-value=2.2e-15 Score=90.78 Aligned_cols=47 Identities=49% Similarity=0.703 Sum_probs=45.0
Q ss_pred HhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHccccccccccCCC
Q 034868 3 SWVFGFAVGAEADDERIEFLLSEVKGKDITELIASGREKLASVPSGG 49 (80)
Q Consensus 3 ~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~g~~~~~~~~~~g 49 (80)
+++||+++|++|+++|+++|+++|+||||++||++|..+++++|+||
T Consensus 24 I~~il~aaGvevd~~~~~~~~~aL~gk~i~elIa~g~~kl~s~p~gg 70 (70)
T 2lbf_B 24 IKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGG 70 (70)
T ss_dssp HHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHHTTCSSSCSSCCCCC
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 57899999999999999999999999999999999999999999875
No 6
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=74.05 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=33.5
Q ss_pred HhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 3 SWVFGFAVGAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 3 ~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
+++||+++|++|+++|+.+|+++|+||||++||.+
T Consensus 28 I~~il~AaGveve~~~~~lf~~aL~gk~I~elI~~ 62 (69)
T 2lbf_A 28 INALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62 (69)
T ss_dssp HHHHHHHHTCCCCTHHHHHHHHHTTTSCGGGGGTT
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHh
Confidence 57899999999999999999999999999999976
No 7
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.17 E-value=2.9e-11 Score=70.16 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=33.4
Q ss_pred HhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 3 SWVFGFAVGAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 3 ~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
+++||+++|++|+++|+.+|+++|+||||++||++
T Consensus 22 I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~ 56 (58)
T 3a1y_A 22 LKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEK 56 (58)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHc
Confidence 57899999999999999999999999999999975
No 8
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=99.00 E-value=4e-11 Score=88.48 Aligned_cols=53 Identities=42% Similarity=0.603 Sum_probs=0.0
Q ss_pred CCChHHHHHccccccccccCCCCCCCcchhhhhhhhhhhhcccccCCCCCCCC
Q 034868 28 GKDITELIASGREKLASVPSGGAAAAPAAEAKKEEKVEEKEESDDDMGFSLFD 80 (80)
Q Consensus 28 gk~i~eLI~~g~~~~~~~~~~g~aaa~a~~~~~~~k~eeeEE~ddDmgfgLFd 80 (80)
-..|.++|++.+.-.+++|++++++++++++++++++|++||+||||||||||
T Consensus 260 ~~~ik~~la~p~a~a~aa~~a~~~~~~~~~~~~~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 260 IEDLVDRIENPEKYAAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp -----------------------------------------------------
T ss_pred chhHHHHHhChhhhhcccccccccccccccccccccccccccccccCCCCCCC
Confidence 34566777664433222232222112222233445556677889999999998
No 9
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=98.93 E-value=1e-10 Score=86.53 Aligned_cols=52 Identities=37% Similarity=0.580 Sum_probs=0.0
Q ss_pred CChHHHHHccccccccccCCCCCC-C-cchhhhhhhhhhhhcccccCCCCCCCC
Q 034868 29 KDITELIASGREKLASVPSGGAAA-A-PAAEAKKEEKVEEKEESDDDMGFSLFD 80 (80)
Q Consensus 29 k~i~eLI~~g~~~~~~~~~~g~aa-a-~a~~~~~~~k~eeeEE~ddDmgfgLFd 80 (80)
++|.++|++.+.-.+++|++++++ + +++++++++++|++||+||||||||||
T Consensus 266 e~ik~~l~~p~~~a~aa~~a~~~~~~~~~~~~~~~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 266 DKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp ------------------------------------------------------
T ss_pred hhHHHHHhhhhhhccccccccccccccccccccccccccccccccccCCCCCCC
Confidence 577888877544322222222111 1 112233445566677889999999998
No 10
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.82 E-value=7.9e-11 Score=87.07 Aligned_cols=54 Identities=39% Similarity=0.533 Sum_probs=21.2
Q ss_pred CCCChHHHHHcccccccc-ccCCCCCCC--cchhhhhhhhhhhhcccccCCCCCCCC
Q 034868 27 KGKDITELIASGREKLAS-VPSGGAAAA--PAAEAKKEEKVEEKEESDDDMGFSLFD 80 (80)
Q Consensus 27 ~gk~i~eLI~~g~~~~~~-~~~~g~aaa--~a~~~~~~~k~eeeEE~ddDmgfgLFd 80 (80)
++++|.++|.+.+...++ +|+++++++ ++++++++++++++||+||||||||||
T Consensus 261 ea~~vk~~l~~~~~~~~a~a~~a~~~~~~~~~~~~~~~~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 261 LAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp CHHHHHTTTHHHHHHHHHHHHHTTSSHHHHHHHHHHSTTHHHHTSSCC---------
T ss_pred hhhhHHHHHhccCccccccccccccccccccccccccccccCCccccccccCcCCCC
Confidence 466778888765432211 222211111 112223444556677889999999998
No 11
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=97.14 E-value=0.00027 Score=45.31 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.4
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChH
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDIT 32 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~ 32 (80)
+.-.||++.|++|+.++|+.++++. |.+|+
T Consensus 10 YaaLiL~d~~~~itad~I~~ilkAa-GveVe 39 (110)
T 3iz5_t 10 LAALILHDDGIPITSEKIATVVKAA-GIKVE 39 (110)
T ss_dssp HHHHHHHHHTCCCSHHHHHHHHHHH-TCCCC
T ss_pred HHHHHHcCCCCCcChHHHHHHHHHh-CCccc
Confidence 4557999999999999999999987 55654
No 12
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=96.82 E-value=0.00086 Score=42.61 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=26.2
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChHH
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDITE 33 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~e 33 (80)
+.-.||++.|++|+.++|+.++++. |.+|+.
T Consensus 9 YaaLiL~d~~~~~tad~I~~ilkAa-GveVe~ 39 (106)
T 3izc_t 9 YAALILADSEIEISSEKLLTLTNAA-NVPDEN 39 (106)
T ss_dssp HHHHHHHHHTCCCSHHHHHHHHHHH-TCCCCH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHc-CCcccH
Confidence 4567999999999999999999987 666654
No 13
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.48 E-value=0.087 Score=38.88 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred HhCCCChHHHHH
Q 034868 25 EVKGKDITELIA 36 (80)
Q Consensus 25 aL~gk~i~eLI~ 36 (80)
.+...++.+-|.
T Consensus 282 ~~~~~~~~e~~~ 293 (339)
T 3j21_k 282 QLPEDVLDEKTK 293 (339)
T ss_dssp ------------
T ss_pred hhccccchhHHh
Confidence 334444444444
No 14
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=70.27 E-value=3.3 Score=23.93 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=25.1
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChH
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDIT 32 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~ 32 (80)
+.--||++.|+++++++++.++++. |.+++
T Consensus 11 YAAllL~~~g~~~ta~~I~~il~Aa-Gveve 40 (69)
T 2lbf_A 11 YSALILHDDEVTVTEDKINALIKAA-GVNVE 40 (69)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHH-TCCCC
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHc-CCCcc
Confidence 3457899999999999999999987 56665
No 15
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=40.71 E-value=24 Score=20.16 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.4
Q ss_pred hHhhhhhhcCC-CcCHHHHHHHHHHh
Q 034868 2 FSWVFGFAVGA-EADDERIEFLLSEV 26 (80)
Q Consensus 2 ~~~~iL~aaGv-eV~~~~~~~~~kaL 26 (80)
.+..||++.|+ .+++.-+..|+..+
T Consensus 6 ~i~~iLk~~G~~~~~~~v~~~L~e~~ 31 (68)
T 1taf_A 6 VIMSILKELNVQEYEPRVVNQLLEFT 31 (68)
T ss_dssp HHHHHHHHTTCCCBCTHHHHHHHHHH
T ss_pred HHHHHHHHCCCcccCHHHHHHHHHHH
Confidence 35789999999 69999999998766
No 16
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=34.77 E-value=35 Score=21.80 Aligned_cols=24 Identities=4% Similarity=-0.252 Sum_probs=21.3
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHH
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSE 25 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~ka 25 (80)
+.+.+|+..||.|....+..|+..
T Consensus 13 ~Lk~~LK~rGvkV~~k~L~~Ff~~ 36 (124)
T 2lpy_A 13 QLKQALKTRGVKVKYADLLKFFDF 36 (124)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCeeecHHHHHHHHHH
Confidence 467899999999999999999963
No 17
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=23.70 E-value=76 Score=19.30 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 11 GAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 11 GveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
.+.+.+-++..++.++.|+++.+-+.-
T Consensus 5 ~ir~SpkK~r~va~~IrG~~v~eAl~~ 31 (110)
T 2ftc_M 5 QIKYSKDKMWYLAKLIRGMSIDQALAQ 31 (110)
T ss_pred cceeCHHHHHHHHHHHcCCcHHHHHHH
Confidence 567899999999999999999987764
No 18
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=20.39 E-value=94 Score=21.26 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=25.8
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHH
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDITELIA 36 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~ 36 (80)
+++.++...|+.++++-+..++.... -|+..++.
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~-gdl~~~~~ 183 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYE-GNLLALAQ 183 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSST-TCHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhc-hHHHHHHH
Confidence 46778888999999998888887664 36666655
No 19
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=20.30 E-value=95 Score=18.85 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 11 GAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 11 GveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
.+.+.+-++..++..+.|+++.+-+.-
T Consensus 9 ~ir~SpkK~r~va~~IrG~~v~~Al~~ 35 (110)
T 1i4j_A 9 YVRISPRKVRLVVDLIRGKSLEEARNI 35 (110)
T ss_dssp EESSCHHHHHHHHHHHTTCBHHHHHHH
T ss_pred CccCCHHHHHHHHHHHcCCcHHHHHHH
Confidence 467899999999999999999987764
Done!