Query 034868
Match_columns 80
No_of_seqs 125 out of 863
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 11:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sxjd2 c.37.1.20 (D:26-262) R 35.1 28 0.0021 20.6 4.3 35 2-37 175-209 (237)
2 d1sxjc2 c.37.1.20 (C:12-238) R 34.7 29 0.0021 20.6 4.3 35 2-37 166-200 (227)
3 d1iqpa2 c.37.1.20 (A:2-232) Re 31.9 27 0.002 20.9 3.8 35 2-37 176-210 (231)
4 d2elca1 a.46.2.1 (A:1-52) Anth 27.8 26 0.0019 17.2 2.7 22 13-34 29-52 (52)
5 d1sxja2 c.37.1.20 (A:295-547) 27.4 28 0.002 20.9 3.3 35 2-37 192-226 (253)
6 d2f76x1 a.61.1.3 (X:1-94) Maso 25.6 31 0.0023 19.3 3.0 24 2-25 14-37 (94)
7 d1i4ja_ d.55.1.1 (A:) Ribosoma 21.7 40 0.0029 19.2 3.0 27 11-37 9-35 (110)
8 d1uoua1 a.46.2.1 (A:33-100) Th 20.8 47 0.0034 16.8 3.0 25 12-36 32-58 (68)
9 d1brwa1 a.46.2.1 (A:1-70) Pyri 20.2 49 0.0036 16.7 3.0 25 12-36 31-57 (70)
10 d2zjrp1 d.55.1.1 (P:8-134) Rib 18.8 46 0.0033 19.5 2.9 26 12-37 24-49 (127)
No 1
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.13 E-value=28 Score=20.60 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=28.1
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
+.+.|+..-++.++++.+..+++...| |+..+|..
T Consensus 175 ~L~~i~~~e~i~i~~~~l~~ia~~s~g-d~R~ai~~ 209 (237)
T d1sxjd2 175 RLRFISEQENVKCDDGVLERILDISAG-DLRRGITL 209 (237)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHH
T ss_pred hhhhhhhhhcCcCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 356788888999999999999988755 88776653
No 2
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.70 E-value=29 Score=20.64 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=29.0
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
+...|+..-|+.++++.++.+++.-.| |+..+|..
T Consensus 166 ~l~~I~~~e~i~i~~~~l~~i~~~s~G-d~R~ain~ 200 (227)
T d1sxjc2 166 RIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNV 200 (227)
T ss_dssp HHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ccccccccccccCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 356788888999999999999988766 89888864
No 3
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=31.93 E-value=27 Score=20.90 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=28.8
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
+.+.++..-++.++...++.+++...| |+.++|..
T Consensus 176 ~l~~~~~~e~i~i~~~~l~~I~~~~~g-diR~ai~~ 210 (231)
T d1iqpa2 176 RLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINI 210 (231)
T ss_dssp HHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 356778888999999999999988877 88887753
No 4
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=27.78 E-value=26 Score=17.24 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=14.0
Q ss_pred CcCHHHHHHHHHHh--CCCChHHH
Q 034868 13 EADDERIEFLLSEV--KGKDITEL 34 (80)
Q Consensus 13 eV~~~~~~~~~kaL--~gk~i~eL 34 (80)
++++..+..|+-+| +|-++++|
T Consensus 29 ~~~~~qiaafL~al~~KGeT~~Ei 52 (52)
T d2elca1 29 EVSPVRAAGLLVALSLRGERPHEI 52 (52)
T ss_dssp CSCHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcccC
Confidence 67777777777666 55555543
No 5
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.37 E-value=28 Score=20.93 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.7
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
+.+.|+..-|+.+++.-++.+++.-.| |+..+|..
T Consensus 192 ~l~~i~~~e~i~i~~~~l~~i~~~s~G-DiR~ai~~ 226 (253)
T d1sxja2 192 RLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINL 226 (253)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhCCC-cHHHHHHH
Confidence 356788888999999999998887655 88888753
No 6
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=25.60 E-value=31 Score=19.33 Aligned_cols=24 Identities=4% Similarity=-0.252 Sum_probs=20.7
Q ss_pred hHhhhhhhcCCCcCHHHHHHHHHH
Q 034868 2 FSWVFGFAVGAEADDERIEFLLSE 25 (80)
Q Consensus 2 ~~~~iL~aaGveV~~~~~~~~~ka 25 (80)
+.+.+|+.-||.|....+..|+..
T Consensus 14 ~Lk~lLk~rGvkV~~~~L~~f~~~ 37 (94)
T d2f76x1 14 QLKQALKTRGVKVKYADLLKFFDF 37 (94)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCeecCHHHHHHHHHH
Confidence 356789999999999999999964
No 7
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}
Probab=21.75 E-value=40 Score=19.18 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 11 GAEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 11 GveV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
.+.+.+-++..++..+.|+++.+-|..
T Consensus 9 ~ir~Sp~K~r~va~~IrG~~v~~Al~~ 35 (110)
T d1i4ja_ 9 YVRISPRKVRLVVDLIRGKSLEEARNI 35 (110)
T ss_dssp EESSCHHHHHHHHHHHTTCBHHHHHHH
T ss_pred ccccCHHHHHHHHHHHcCCcHHHHHHH
Confidence 367889999999999999999988864
No 8
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.83 E-value=47 Score=16.84 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=17.6
Q ss_pred CCcCHHHHHHHHHHh--CCCChHHHHH
Q 034868 12 AEADDERIEFLLSEV--KGKDITELIA 36 (80)
Q Consensus 12 veV~~~~~~~~~kaL--~gk~i~eLI~ 36 (80)
-++++..+..|+.+| +|-+..|+..
T Consensus 32 g~~s~~qi~afL~al~~kG~t~~Ei~~ 58 (68)
T d1uoua1 32 GSAQGAQIGAMLMAIRLRGMDLEETSV 58 (68)
T ss_dssp TCSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 357777777777766 6777777764
No 9
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.21 E-value=49 Score=16.72 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=17.2
Q ss_pred CCcCHHHHHHHHHHh--CCCChHHHHH
Q 034868 12 AEADDERIEFLLSEV--KGKDITELIA 36 (80)
Q Consensus 12 veV~~~~~~~~~kaL--~gk~i~eLI~ 36 (80)
-++++..+..|+.+| +|-++.++..
T Consensus 31 g~~s~~qi~afL~al~~kG~t~~Ei~~ 57 (70)
T d1brwa1 31 GDIPDYQMSALAMAIYFRGMTEEETAA 57 (70)
T ss_dssp TSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356777777777766 6777777664
No 10
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}
Probab=18.84 E-value=46 Score=19.46 Aligned_cols=26 Identities=8% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCcCHHHHHHHHHHhCCCChHHHHHc
Q 034868 12 AEADDERIEFLLSEVKGKDITELIAS 37 (80)
Q Consensus 12 veV~~~~~~~~~kaL~gk~i~eLI~~ 37 (80)
+.+.+-++..++..+.|++|.+-|..
T Consensus 24 ir~Sp~K~r~v~~~IrG~~v~eAl~~ 49 (127)
T d2zjrp1 24 VRMSPRKVRLVVDVIRGKSVQDAEDL 49 (127)
T ss_dssp ESSCHHHHHHHHHHSTTSBHHHHHHH
T ss_pred cccCHHHHHHHHHHHcCCcHHHHHHH
Confidence 67899999999999999999998875
Done!