BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034871
MAYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAV
AFLITNVCELELQGDVGSIQ

High Scoring Gene Products

Symbol, full name Information P value
CRR7
AT5G39210 		protein from Arabidopsis thaliana 4.4e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034871
        (80 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2157250 - symbol:CRR7 "AT5G39210" species:3702...   238  4.4e-20   1


>TAIR|locus:2157250 [details] [associations]
            symbol:CRR7 "AT5G39210" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0010275 "NAD(P)H dehydrogenase complex assembly"
            evidence=IGI;IMP] [GO:0010598 "NAD(P)H dehydrogenase complex
            (plastoquinone)" evidence=IGI] [GO:0016020 "membrane" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0010207 "photosystem II
            assembly" evidence=RCA] [GO:0016556 "mRNA modification"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] EMBL:CP002688 GO:GO:0009570 GO:GO:0010275
            EMBL:AB010694 GO:GO:0010598 EMBL:AY065367 EMBL:AY114028
            IPI:IPI00534117 RefSeq:NP_568563.1 UniGene:At.28515
            ProteinModelPortal:Q9FL87 SMR:Q9FL87 STRING:Q9FL87 PRIDE:Q9FL87
            EnsemblPlants:AT5G39210.1 GeneID:833917 KEGG:ath:AT5G39210
            TAIR:At5g39210 InParanoid:Q9FL87 OMA:RKSKSHF PhylomeDB:Q9FL87
            ProtClustDB:CLSN2689897 ArrayExpress:Q9FL87 Genevestigator:Q9FL87
            InterPro:IPR021954 Pfam:PF12095 Uniprot:Q9FL87
        Length = 156

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 46/78 (58%), Positives = 60/78 (76%)

Query:     3 YSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAF 62
             +S ++TYVLLE G +E+FVTE+ELKA+L+ WLENW        LPPDLA+F  +DEAV F
Sbjct:    76 HSNSDTYVLLEAGQDEQFVTEDELKAKLRGWLENWP----VNSLPPDLARFDDLDEAVDF 131

Query:    63 LITNVCELELQGDVGSIQ 80
             L+  VCELE+ G+VGS+Q
Sbjct:   132 LVKAVCELEIDGEVGSVQ 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        80   0.00091  102 3  11 22  0.46    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  562 (60 KB)
  Total size of DFA:  108 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.55u 0.14s 9.69t   Elapsed:  00:00:01
  Total cpu time:  9.55u 0.14s 9.69t   Elapsed:  00:00:01
  Start:  Mon May 20 17:53:56 2013   End:  Mon May 20 17:53:57 2013

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