Query 034871
Match_columns 80
No_of_seqs 56 out of 58
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12095 DUF3571: Protein of u 100.0 5.6E-37 1.2E-41 201.7 5.5 71 2-80 6-76 (83)
2 PHA03373 tegument protein; Pro 78.3 5 0.00011 31.3 4.7 50 7-65 21-70 (247)
3 cd08757 SAM_PNT_ESE Sterile al 70.1 3.3 7.1E-05 25.7 1.6 52 20-79 4-58 (68)
4 PF12091 DUF3567: Protein of u 64.8 3.6 7.7E-05 27.5 1.1 14 1-15 3-16 (85)
5 PRK10941 hypothetical protein; 60.5 31 0.00068 26.4 5.6 52 8-66 135-186 (269)
6 cd08203 SAM_PNT Sterile alpha 60.3 6.7 0.00014 24.0 1.6 33 20-60 4-37 (66)
7 PF08852 DUF1822: Protein of u 53.7 12 0.00026 29.5 2.4 42 29-79 36-77 (368)
8 cd08536 SAM_PNT-Mae Sterile al 51.5 13 0.00028 23.1 1.9 51 20-78 4-55 (66)
9 PF02198 SAM_PNT: Sterile alph 50.9 17 0.00037 22.8 2.4 52 19-78 18-71 (84)
10 PF05721 PhyH: Phytanoyl-CoA d 50.1 14 0.00031 24.0 2.1 19 5-28 2-20 (211)
11 PLN03107 eukaryotic translatio 49.7 19 0.00041 25.9 2.8 35 2-36 93-133 (159)
12 PF08343 RNR_N: Ribonucleotide 46.8 41 0.0009 21.7 3.8 22 46-67 34-55 (82)
13 COG2912 Uncharacterized conser 45.8 36 0.00078 26.7 4.0 55 5-66 132-186 (269)
14 PF14584 DUF4446: Protein of u 44.2 23 0.00049 25.2 2.4 27 2-28 117-146 (151)
15 cd04470 S1_EF-P_repeat_1 S1_EF 42.5 18 0.00039 21.7 1.5 34 2-35 8-41 (61)
16 PF00113 Enolase_C: Enolase, C 42.5 22 0.00047 27.8 2.3 32 7-38 116-150 (295)
17 PF13474 SnoaL_3: SnoaL-like d 41.9 52 0.0011 19.7 3.5 31 7-37 26-56 (121)
18 TIGR01280 xseB exodeoxyribonuc 41.6 50 0.0011 20.4 3.4 25 21-49 1-25 (67)
19 TIGR03355 VI_chp_2 type VI sec 41.6 11 0.00024 31.5 0.6 31 8-38 383-414 (473)
20 PF10436 BCDHK_Adom3: Mitochon 40.4 43 0.00094 23.6 3.4 43 23-71 28-70 (164)
21 cd02419 Peptidase_C39C A sub-f 39.9 36 0.00078 21.2 2.7 27 5-31 93-119 (127)
22 PRK14578 elongation factor P; 39.8 21 0.00046 26.3 1.8 34 2-35 75-108 (187)
23 PF07766 LETM1: LETM1-like pro 39.4 26 0.00056 26.5 2.2 20 20-39 238-257 (268)
24 PLN03145 Protein phosphatase 2 39.3 94 0.002 24.7 5.4 50 5-70 267-316 (365)
25 TIGR02178 yeiP elongation fact 38.4 24 0.00052 26.0 1.9 35 2-36 73-107 (186)
26 PRK00982 acpP acyl carrier pro 38.1 56 0.0012 19.3 3.2 37 22-66 39-76 (78)
27 PF00159 Hormone_3: Pancreatic 37.7 48 0.001 18.8 2.7 22 12-33 3-24 (36)
28 PRK05828 acyl carrier protein; 36.5 50 0.0011 21.0 2.9 17 21-37 1-17 (84)
29 PF13193 AMP-binding_C: AMP-bi 36.2 31 0.00066 20.2 1.8 17 22-38 36-52 (73)
30 COG0030 KsgA Dimethyladenosine 35.2 13 0.00029 28.6 0.2 11 69-79 34-44 (259)
31 cd02425 Peptidase_C39F A sub-f 34.4 50 0.0011 20.4 2.7 25 5-29 94-118 (126)
32 PRK05350 acyl carrier protein; 34.2 66 0.0014 19.6 3.2 18 21-38 2-19 (82)
33 PF11918 DUF3436: Domain of un 33.8 35 0.00075 21.2 1.8 15 20-34 37-51 (55)
34 PRK14063 exodeoxyribonuclease 33.7 81 0.0018 20.0 3.6 27 19-49 3-29 (76)
35 PF02037 SAP: SAP domain; Int 33.4 48 0.001 17.8 2.2 13 22-34 23-35 (35)
36 PF05201 GlutR_N: Glutamyl-tRN 33.4 14 0.00031 25.6 0.0 61 9-71 39-103 (152)
37 PF07453 NUMOD1: NUMOD1 domain 33.1 27 0.00058 18.5 1.1 14 50-63 13-26 (37)
38 PF11338 DUF3140: Protein of u 32.8 27 0.00058 23.5 1.3 17 20-36 7-23 (92)
39 PRK00977 exodeoxyribonuclease 32.2 1.1E+02 0.0024 19.5 4.0 31 15-49 4-34 (80)
40 cd02983 P5_C P5 family, C-term 31.4 91 0.002 20.9 3.7 39 8-47 84-128 (130)
41 COG4030 Uncharacterized protei 31.0 51 0.0011 26.5 2.7 49 18-74 153-206 (315)
42 cd00126 PAH Pancreatic Hormone 31.0 77 0.0017 18.0 2.8 22 12-33 3-24 (36)
43 cd04436 DEP_fRgd2 DEP (Disheve 30.7 82 0.0018 20.8 3.3 42 26-67 2-43 (84)
44 KOG3424 40S ribosomal protein 30.1 70 0.0015 23.0 3.1 28 10-39 26-53 (132)
45 PF13986 DUF4224: Domain of un 29.9 34 0.00074 19.9 1.3 10 19-28 1-10 (47)
46 cd08532 SAM_PNT-PDEF-like Ster 28.5 79 0.0017 20.1 2.9 29 19-54 11-39 (76)
47 PRK04542 elongation factor P; 28.4 45 0.00097 24.7 1.9 34 2-35 75-108 (189)
48 PRK10853 putative reductase; P 27.6 1.6E+02 0.0034 19.6 4.3 47 18-66 34-86 (118)
49 cd05213 NAD_bind_Glutamyl_tRNA 27.5 67 0.0014 24.3 2.8 57 8-71 41-104 (311)
50 PRK12426 elongation factor P; 27.2 46 0.00099 24.6 1.8 34 2-35 73-106 (185)
51 PF13297 Telomere_Sde2_2: Telo 26.8 1.1E+02 0.0024 19.2 3.3 37 19-66 5-45 (60)
52 PRK12449 acyl carrier protein; 26.8 77 0.0017 18.9 2.5 17 21-37 1-17 (80)
53 PF02260 FATC: FATC domain; I 26.4 26 0.00057 19.0 0.3 14 55-68 4-17 (33)
54 cd02418 Peptidase_C39B A sub-f 26.3 82 0.0018 19.7 2.7 24 6-29 100-123 (136)
55 PRK00529 elongation factor P; 26.1 56 0.0012 23.5 2.1 34 2-35 73-106 (186)
56 PF07293 DUF1450: Protein of u 26.0 65 0.0014 20.8 2.1 24 15-38 53-76 (78)
57 PRK09860 putative alcohol dehy 25.8 1E+02 0.0022 24.2 3.6 40 23-69 320-359 (383)
58 PRK04081 hypothetical protein; 25.6 1.1E+02 0.0023 23.6 3.5 30 9-38 74-103 (207)
59 PF12939 DUF3837: Domain of un 25.4 95 0.0021 21.3 3.0 40 16-71 42-81 (102)
60 COG3905 Predicted transcriptio 25.3 61 0.0013 21.6 2.0 19 19-37 61-79 (83)
61 KOG0700 Protein phosphatase 2C 25.1 1.1E+02 0.0023 25.4 3.7 35 5-39 328-363 (390)
62 PF14000 Packaging_FI: DNA pac 25.1 1.4E+02 0.003 21.1 3.8 41 22-71 1-41 (125)
63 COG2177 FtsX Cell division pro 24.5 50 0.0011 25.8 1.7 18 19-36 91-108 (297)
64 COG4296 Uncharacterized protei 24.4 55 0.0012 24.1 1.8 16 16-31 97-112 (156)
65 PLN00203 glutamyl-tRNA reducta 24.4 1.3E+02 0.0027 25.3 4.1 58 8-71 125-190 (519)
66 cd08192 Fe-ADH7 Iron-containin 24.3 1.1E+02 0.0025 23.4 3.6 39 23-68 310-348 (370)
67 PF01132 EFP: Elongation facto 24.0 8.9 0.00019 22.6 -2.0 33 2-34 7-39 (55)
68 cd08551 Fe-ADH iron-containing 24.0 1.2E+02 0.0025 23.2 3.6 39 23-68 311-349 (370)
69 PTZ00224 protein phosphatase 2 23.7 2.6E+02 0.0057 22.4 5.6 47 7-69 209-256 (381)
70 cd08177 MAR Maleylacetate redu 23.5 1.3E+02 0.0027 23.0 3.6 37 23-66 279-315 (337)
71 cd02420 Peptidase_C39D A sub-f 23.4 1.1E+02 0.0023 19.1 2.8 24 6-29 94-117 (125)
72 TIGR00038 efp translation elon 23.4 71 0.0015 23.0 2.2 34 2-35 72-105 (184)
73 PF00398 RrnaAD: Ribosomal RNA 23.2 62 0.0014 23.7 1.9 15 65-79 30-44 (262)
74 TIGR00037 eIF_5A translation i 23.2 55 0.0012 22.5 1.5 19 2-20 79-97 (130)
75 PF13369 Transglut_core2: Tran 23.2 2.5E+02 0.0054 19.0 4.8 51 7-64 101-151 (152)
76 COG1669 Predicted nucleotidylt 23.1 97 0.0021 20.9 2.7 44 5-50 43-86 (97)
77 PF00590 TP_methylase: Tetrapy 22.9 47 0.001 22.6 1.1 34 47-80 84-119 (210)
78 COG0231 Efp Translation elonga 22.8 55 0.0012 22.6 1.4 34 2-35 75-108 (131)
79 TIGR00636 PduO_Nterm ATP:cob(I 22.8 1.9E+02 0.0042 20.8 4.3 40 23-68 78-121 (171)
80 smart00309 PAH Pancreatic horm 22.7 1.4E+02 0.0029 17.0 2.8 21 13-33 4-24 (36)
81 cd08320 Pyrin_NALPs Pyrin deat 22.7 2.2E+02 0.0047 18.2 4.9 49 20-69 9-57 (86)
82 PRK10624 L-1,2-propanediol oxi 22.7 1.3E+02 0.0028 23.4 3.6 38 24-68 320-357 (382)
83 PF02609 Exonuc_VII_S: Exonucl 22.7 1.3E+02 0.0028 17.3 2.9 22 24-49 2-23 (53)
84 COG2096 cob(I)alamin adenosylt 22.6 1.7E+02 0.0036 21.9 4.0 42 20-68 84-129 (184)
85 cd08193 HVD 5-hydroxyvalerate 22.5 1.3E+02 0.0028 23.2 3.6 40 23-69 315-354 (376)
86 PRK13669 hypothetical protein; 22.5 87 0.0019 20.4 2.3 25 14-38 52-76 (78)
87 cd08191 HHD 6-hydroxyhexanoate 22.4 1.3E+02 0.0028 23.4 3.6 38 24-68 327-364 (386)
88 PRK15473 cbiF cobalt-precorrin 22.3 46 0.00099 24.5 1.0 57 22-80 65-121 (257)
89 TIGR02408 ectoine_ThpD ectoine 22.2 83 0.0018 23.4 2.4 28 3-37 25-52 (277)
90 PLN03051 acyl-activating enzym 22.2 1.4E+02 0.003 23.1 3.7 24 11-36 432-455 (499)
91 PRK07788 acyl-CoA synthetase; 22.0 93 0.002 24.1 2.7 27 8-37 494-520 (549)
92 PF09743 DUF2042: Uncharacteri 21.6 83 0.0018 24.2 2.3 65 11-75 41-106 (272)
93 PF06348 DUF1059: Protein of u 21.5 1.9E+02 0.004 17.2 3.4 27 22-51 21-47 (57)
94 cd02423 Peptidase_C39G A sub-f 21.4 1.2E+02 0.0026 18.7 2.7 25 6-30 98-122 (129)
95 TIGR02638 lactal_redase lactal 21.3 1.4E+02 0.003 23.2 3.6 39 23-68 320-358 (379)
96 PF08216 CTNNBL: Catenin-beta- 21.2 66 0.0014 22.1 1.6 44 14-63 50-96 (108)
97 PF00481 PP2C: Protein phospha 21.2 86 0.0019 22.4 2.2 45 7-67 201-245 (254)
98 PF00465 Fe-ADH: Iron-containi 21.2 92 0.002 23.7 2.5 41 23-70 311-351 (366)
99 TIGR00755 ksgA dimethyladenosi 21.1 61 0.0013 23.5 1.5 13 67-79 31-43 (253)
100 PF07315 DUF1462: Protein of u 21.0 1E+02 0.0022 21.0 2.4 16 22-37 17-32 (93)
101 cd08187 BDH Butanol dehydrogen 20.9 1.5E+02 0.0032 23.0 3.6 39 23-68 322-360 (382)
102 PF14829 GPAT_N: Glycerol-3-ph 20.9 1.4E+02 0.003 19.7 3.0 23 22-51 10-32 (77)
103 PRK11449 putative deoxyribonuc 20.8 2.2E+02 0.0048 21.1 4.4 17 54-70 239-255 (258)
104 KOG2564 Predicted acetyltransf 20.8 1.1E+02 0.0025 25.0 3.0 33 22-66 184-216 (343)
105 PF15249 GLTSCR1: Glioma tumor 20.7 74 0.0016 21.0 1.7 21 46-66 13-34 (109)
106 PF14229 DUF4332: Domain of un 20.6 1.2E+02 0.0025 20.4 2.7 40 21-63 83-122 (122)
107 cd01813 UBP_N UBP ubiquitin pr 20.6 47 0.001 20.3 0.7 26 23-54 18-43 (74)
108 PF06117 DUF957: Enterobacteri 20.2 1E+02 0.0022 19.7 2.2 20 19-38 2-21 (65)
No 1
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=100.00 E-value=5.6e-37 Score=201.69 Aligned_cols=71 Identities=46% Similarity=0.869 Sum_probs=53.7
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccccccCCcccCC
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 80 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pG~~~~~ 80 (80)
|| ++|||||||||+||||||++||++|||+||++. ++||+||+||+|+++||+||++|+|||||+||. +||
T Consensus 6 m~-~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~------~~LP~dL~~~~s~~~qa~~Lldt~CeLeigpg~-~lQ 76 (83)
T PF12095_consen 6 MY-QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQ------DDLPPDLAKFSSVEEQAQYLLDTACELEIGPGG-YLQ 76 (83)
T ss_dssp S------EEEEESSS-SEEE-HHHHHHHHHHHHHHT------TTS-HHHHH---HHHHHHHHHHH---EEEETTE-EEE
T ss_pred hh-ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcC------CCCCHHHHhCCCHHHHHHHHHHhceeeecCCCC-EEE
Confidence 89 999999999999999999999999999999994 489999999999999999999999999999996 665
No 2
>PHA03373 tegument protein; Provisional
Probab=78.33 E-value=5 Score=31.34 Aligned_cols=50 Identities=30% Similarity=0.387 Sum_probs=43.6
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHH
Q 034871 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLIT 65 (80)
Q Consensus 7 D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lld 65 (80)
-.||+|-|.. -+..+||.++|++-..+. +-.|.||..|.-..+-..+|+.
T Consensus 21 a~Y~lL~~se---dve~~eL~~flee~f~~l------Git~~Di~~~~rDtEv~khLL~ 70 (247)
T PHA03373 21 AEYVLLRPSE---DVELAELEAFLEENFKDF------GITQADIRSLSRDTEVVKHLLQ 70 (247)
T ss_pred CceEEecCcc---hhhHHHHHHHHHHhHHhc------CcCHHHHHHHhhhhHHHHHHHH
Confidence 4699998865 377899999999998888 4799999999999999999985
No 3
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=70.08 E-value=3.3 Score=25.69 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCC---hHhhccCCHHHHHHHHHHhcccccccCCcccC
Q 034871 20 FVTEEELKARLKYWLENWAGQVGKGGLP---PDLAKFATIDEAVAFLITNVCELELQGDVGSI 79 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP---~dL~k~~s~~~qaq~Lldt~CELEi~pG~~~~ 79 (80)
.=|++..++||.-+.... .+| .++.+| .++-++--.+.-..=+.+.|..|+|
T Consensus 4 ~Wt~~~V~~Wl~w~~~e~-------~l~~~~i~~~~F-~m~Gk~LC~ms~edF~~~~p~~Gdi 58 (68)
T cd08757 4 YWTKNDVLEWLQFVAEQN-------KLDAECISFQKF-NIDGQTLCSMTEEEFREAAGSYGSL 58 (68)
T ss_pred hCCHHHHHHHHHHHHHHc-------CCCCCcCCcccc-CCCHHHHHcCCHHHHHHHcCCcHHH
Confidence 458899999999988877 455 488998 7777665555544444555556654
No 4
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=64.82 E-value=3.6 Score=27.50 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=12.2
Q ss_pred CCccccCceEEecCC
Q 034871 1 MAYSRTETYVLLEPG 15 (80)
Q Consensus 1 ~my~q~D~YVvLEp~ 15 (80)
|+| ++|+|+|++=+
T Consensus 3 miY-nSd~y~VV~~~ 16 (85)
T PF12091_consen 3 MIY-NSDNYCVVEFP 16 (85)
T ss_pred eee-cCCceEEEEec
Confidence 799 99999999854
No 5
>PRK10941 hypothetical protein; Provisional
Probab=60.45 E-value=31 Score=26.36 Aligned_cols=52 Identities=21% Similarity=0.079 Sum_probs=37.4
Q ss_pred ceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHh
Q 034871 8 TYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (80)
Q Consensus 8 ~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 66 (80)
..+++.|-.. ++||++++..||+..+.... .|-++--+-.|..+-..++++|
T Consensus 135 ~~~~IDPf~G-~~L~~~~l~~~L~~~~g~~~------~l~~~~L~~a~~~~il~Rml~n 186 (269)
T PRK10941 135 EMWLINPFNG-ETLDEHTLEVWLKGNISPSA------ELFNEDLDEADNIEVIRKLLDT 186 (269)
T ss_pred ceEEEeCCCC-CCCCHHHHHHHHHhhcCCcc------cCCHHHcCCCCHHHHHHHHHHH
Confidence 3677899664 49999999999997776542 4555555556667777777765
No 6
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=60.29 E-value=6.7 Score=23.99 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCCh-HhhccCCHHHHH
Q 034871 20 FVTEEELKARLKYWLENWAGQVGKGGLPP-DLAKFATIDEAV 60 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~-dL~k~~s~~~qa 60 (80)
.=|++..++||.-..... +||+ ++.+| ...-++
T Consensus 4 ~Wt~~~V~~Wl~w~~~~f-------~L~~~~~~~F-~m~G~~ 37 (66)
T cd08203 4 LWTKEHVLQWLEWAVKEF-------SLPPIDFSKF-NMNGKE 37 (66)
T ss_pred hCCHHHHHHHHHHHHHhc-------CCCCCChhhc-CCCHHH
Confidence 358899999999888888 6777 88888 444443
No 7
>PF08852 DUF1822: Protein of unknown function (DUF1822); InterPro: IPR014951 This group of proteins are functionally uncharacterised.
Probab=53.74 E-value=12 Score=29.50 Aligned_cols=42 Identities=17% Similarity=0.434 Sum_probs=34.5
Q ss_pred HHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccccccCCcccC
Q 034871 29 RLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSI 79 (80)
Q Consensus 29 ~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pG~~~~ 79 (80)
-+..||+.+ +.+.++..-++... +..+++++|+|.|+.+ |.+
T Consensus 36 av~~wL~~~-------~~~~~l~~~~~~~~-~~~~~~~V~~l~i~~~-~kl 77 (368)
T PF08852_consen 36 AVENWLQEM-------DIPTNLEVSDSWNP-LPRFWEDVADLQIGDF-GKL 77 (368)
T ss_pred HHHHHHHhc-------CCCcCcccCccccH-HHHHHHHccCcEEccC-ceE
Confidence 457788888 58888988888887 7888899999999877 753
No 8
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=51.54 E-value=13 Score=23.13 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCCh-HhhccCCHHHHHHHHHHhcccccccCCccc
Q 034871 20 FVTEEELKARLKYWLENWAGQVGKGGLPP-DLAKFATIDEAVAFLITNVCELELQGDVGS 78 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~-dL~k~~s~~~qaq~Lldt~CELEi~pG~~~ 78 (80)
.=|++....||.-..... +||+ ++.+|. ..-++--+|.-..=+...|..|.
T Consensus 4 ~Ws~~~V~~WL~w~~~ef-------~L~~~~~~~F~-m~Gk~LC~ls~edF~~r~P~~Gd 55 (66)
T cd08536 4 SWSREHVRTWLRWVSARY-------QLEVVDLDKFL-MNGKGLCLMSLEGFLYRVPVGGK 55 (66)
T ss_pred cCCHHHHHHHHHHHHHHh-------CCCCCCccccC-CCHHHHHcCCHHHHHhhcCCccH
Confidence 348899999999999988 5776 888884 45444433333333334444443
No 9
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=50.94 E-value=17 Score=22.83 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=30.0
Q ss_pred cccCHHHHHHHHHHHHHhhhccCCCCCCC-hHhhccCCHHHHHHHHHHhcccccccC-Cccc
Q 034871 19 KFVTEEELKARLKYWLENWAGQVGKGGLP-PDLAKFATIDEAVAFLITNVCELELQG-DVGS 78 (80)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~~~~~~~~~LP-~dL~k~~s~~~qaq~Lldt~CELEi~p-G~~~ 78 (80)
+.=|+++..+||.-...+. +|+ .++.+| .++-+.--.+.--.=.+..| +.|+
T Consensus 18 ~~Wt~~~V~~Wl~w~~~~f-------~l~~~~~~~f-~~~G~~Lc~lt~e~F~~~~~~~~G~ 71 (84)
T PF02198_consen 18 RLWTKEDVLQWLRWVVREF-------DLPAIDFSRF-NMNGRELCSLTKEDFRRRFPSGYGD 71 (84)
T ss_dssp GG--HHHHHHHHHHHHHHT-------T-SSCHGGGG-TS-HHHHHHSHHHHHHHHSTHTTHH
T ss_pred hhCCHHHHHHHHHHHHHhc-------CCCcCchhcc-CCCHHHHHHcCHHHHHHHcCCCcHH
Confidence 4568999999997666665 454 588888 66655544444444444444 5554
No 10
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=50.13 E-value=14 Score=23.97 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=13.1
Q ss_pred ccCceEEecCCCCccccCHHHHHH
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKA 28 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~ 28 (80)
+++.|||++. +++++++.+
T Consensus 2 ~~~Gyvvi~~-----~l~~~~~~~ 20 (211)
T PF05721_consen 2 RRDGYVVIRN-----VLSPEEVER 20 (211)
T ss_dssp HHHSEEEETT-----SS-HHHHHH
T ss_pred cCCcEEEECC-----cCCHHHHHH
Confidence 6789999964 888855433
No 11
>PLN03107 eukaryotic translation initiation factor 5A; Provisional
Probab=49.74 E-value=19 Score=25.86 Aligned_cols=35 Identities=9% Similarity=0.315 Sum_probs=27.0
Q ss_pred CccccCce-EEecC--CCCccc-cC--HHHHHHHHHHHHHh
Q 034871 2 AYSRTETY-VLLEP--GVEEKF-VT--EEELKARLKYWLEN 36 (80)
Q Consensus 2 my~q~D~Y-VvLEp--~~~Eqf-lT--~~Ell~~Lk~~L~~ 36 (80)
+|.+.|.| +++.+ ..-||+ |+ ..|+.++|+.+...
T Consensus 93 ly~dgd~y~~fMD~~get~eqi~v~~~~~el~~~i~~~f~~ 133 (159)
T PLN03107 93 IDISEDGFVSLMDESGNTKDDLKLPTEDDTLAEQIKDGFDE 133 (159)
T ss_pred EEEcCCceEEEEcCCCCcceeEEccCcchHHHHHHHHHHhC
Confidence 46667897 99988 367777 77 46999999998753
No 12
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=46.83 E-value=41 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=15.7
Q ss_pred CChHhhccCCHHHHHHHHHHhc
Q 034871 46 LPPDLAKFATIDEAVAFLITNV 67 (80)
Q Consensus 46 LP~dL~k~~s~~~qaq~Lldt~ 67 (80)
.-|-..+|.|+.++..||+++-
T Consensus 34 V~pnt~~F~S~~Erl~yLv~~~ 55 (82)
T PF08343_consen 34 VNPNTVKFNSLKERLDYLVEND 55 (82)
T ss_dssp TGGGB---SSHHHHHHHHHHTT
T ss_pred cccceeecCCHHHHHHHHHHcC
Confidence 3456789999999999999874
No 13
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.77 E-value=36 Score=26.65 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=39.8
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHh
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 66 (80)
..|.+.++.|..++ .++..++..|+++-+.-.. .-+|.+|++- +..+-..+|++|
T Consensus 132 ~~~~~~~idP~ng~-~l~~~~l~~~l~~~~~~~a-----el~~~~L~~a-~~~~il~rll~~ 186 (269)
T COG2912 132 VEDEPLLIDPFNGG-TLSQHELQEWLKGTIGPSA-----ELLPEDLKQA-SNREILSRLLRN 186 (269)
T ss_pred cCCCceeeCCCCCC-cccHHHHHHHHHhccCcHh-----hhhhhhhhhc-cHHHHHHHHHHH
Confidence 56789999999988 9999999999998877332 2466666654 444455555544
No 14
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=44.19 E-value=23 Score=25.19 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.6
Q ss_pred CccccCceEEecC---CCCccccCHHHHHH
Q 034871 2 AYSRTETYVLLEP---GVEEKFVTEEELKA 28 (80)
Q Consensus 2 my~q~D~YVvLEp---~~~EqflT~~Ell~ 28 (80)
+||+++.|+-.-| |+....||+||-.+
T Consensus 117 I~~Re~s~~YaK~I~~G~S~~~LS~EE~ea 146 (151)
T PF14584_consen 117 IHSREESRTYAKPIVNGQSSYPLSEEEKEA 146 (151)
T ss_pred eecCCCcEEEEEEecCCcccccCCHHHHHH
Confidence 6899999998766 99999999999765
No 15
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=42.50 E-value=18 Score=21.74 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=24.7
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (80)
+|.+.+.||++.+..=||+-=+.+.+..=+.||.
T Consensus 8 lY~dg~~~~FMd~etyeQ~~i~~~~igd~~~~L~ 41 (61)
T cd04470 8 LYKDGDNYVFMDTETYEQIELPKEALGDAAKFLK 41 (61)
T ss_pred EEeCCCEEEEeCCCCceEEEECHHHhhhHHhhCc
Confidence 6878899999999999998444555544445554
No 16
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=42.47 E-value=22 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.6
Q ss_pred CceEEe---cCCCCccccCHHHHHHHHHHHHHhhh
Q 034871 7 ETYVLL---EPGVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 7 D~YVvL---Ep~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
..|.+- .++.+.+.+|++|+.+..++|+.++|
T Consensus 116 gkY~~~~~~~~~~~~~~~s~delid~y~~li~~YP 150 (295)
T PF00113_consen 116 GKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKKYP 150 (295)
T ss_dssp TEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHHS-
T ss_pred CeEEEeecccccccccccCHHHHHHHHHHHHHhcC
Confidence 345543 13456789999999999999999998
No 17
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=41.92 E-value=52 Score=19.73 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=28.7
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhh
Q 034871 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENW 37 (80)
Q Consensus 7 D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~ 37 (80)
+.++...++.++.+-+.+++.+.++.+++..
T Consensus 26 ~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 56 (121)
T PF13474_consen 26 DDFVFFGTGPGEIWRGREAIRAYFERDFESF 56 (121)
T ss_dssp EEEEEEETTSSSEEESHHHHHHHHHHHHHTH
T ss_pred CCEEEEcCCCCceECCHHHHHHHHHHHhhhC
Confidence 7889999999999999999999999999876
No 18
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=41.61 E-value=50 Score=20.41 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChH
Q 034871 21 VTEEELKARLKYWLENWAGQVGKGGLPPD 49 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (80)
+|-+|.+++|..+++++.. +++|-+
T Consensus 1 ~sfEe~l~~Le~Iv~~LE~----~~l~Le 25 (67)
T TIGR01280 1 LSFEEALSELEQIVQKLES----GDLALE 25 (67)
T ss_pred CCHHHHHHHHHHHHHHHHC----CCCCHH
Confidence 5778999999999999986 377764
No 19
>TIGR03355 VI_chp_2 type VI secretion protein, EvpB/VC_A0108 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=41.57 E-value=11 Score=31.53 Aligned_cols=31 Identities=16% Similarity=0.530 Sum_probs=24.7
Q ss_pred ceE-EecCCCCccccCHHHHHHHHHHHHHhhh
Q 034871 8 TYV-LLEPGVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 8 ~YV-vLEp~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
||+ |+--++-=.|.|++++..+|.+||.++-
T Consensus 383 HYlKv~~Rd~IGs~~~~~~~e~~Ln~Wi~~Yv 414 (473)
T TIGR03355 383 HYLKVIQRDKIGSFKERADLERELNNWINQYV 414 (473)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 444 4555556678999999999999999994
No 20
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=40.44 E-value=43 Score=23.58 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccccc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 71 (80)
..||.-+|...+...+ .||..+..-+++..-.++-+++.++|-
T Consensus 28 ~~ELpvRlA~ri~~l~------~LP~~l~~~p~i~~V~~~Y~~sF~~L~ 70 (164)
T PF10436_consen 28 RRELPVRLAHRIRELQ------NLPYILVSNPSIQQVYEWYLQSFEELR 70 (164)
T ss_dssp HHHHHHHHHHHHHHHT------TS-HHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hCChhhccChhHHHHHHHHHHHHHHHH
Confidence 5688999999999995 799999999999999999999988863
No 21
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=39.92 E-value=36 Score=21.23 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=19.6
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHH
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKARLK 31 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~Lk 31 (80)
..+.+++..|+...+.+|.+|+.+...
T Consensus 93 ~~~~~~i~dp~~~~~~~~~~el~~~~~ 119 (127)
T cd02419 93 SRRRIVIHDPALGKRKLSLEEASRHFT 119 (127)
T ss_pred cCCEEEEECCccCCEEEcHHHHHhhCC
Confidence 345667778887777899998876543
No 22
>PRK14578 elongation factor P; Provisional
Probab=39.80 E-value=21 Score=26.28 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=26.5
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (80)
+|.+.|+||++.+..=||+-=+.|++.+-+.||.
T Consensus 75 lY~dg~~~~FMD~etyEQ~~i~~~~~g~~~~fL~ 108 (187)
T PRK14578 75 LYADGDRGVFMDLETYEQFEMEEDAFSAIAPFLL 108 (187)
T ss_pred EEeCCCEEEEecCCCcEEEEecHHHhhhHHhhcc
Confidence 6877899999999999999555666665566664
No 23
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=39.36 E-value=26 Score=26.49 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=15.5
Q ss_pred ccCHHHHHHHHHHHHHhhhc
Q 034871 20 FVTEEELKARLKYWLENWAG 39 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~ 39 (80)
-+|.+++..||+.||+-.-.
T Consensus 238 ~~s~~~lr~~L~~WL~ls~~ 257 (268)
T PF07766_consen 238 GLSEEELREWLKQWLQLSSN 257 (268)
T ss_dssp T--HHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcc
Confidence 47999999999999987754
No 24
>PLN03145 Protein phosphatase 2c; Provisional
Probab=39.31 E-value=94 Score=24.69 Aligned_cols=50 Identities=4% Similarity=-0.030 Sum_probs=38.2
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccc
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 70 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CEL 70 (80)
..|.|+||-.+-==.+++.+|....++..|+.. .+..++|+.|++.++.-
T Consensus 267 ~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~----------------~~p~~aa~~Lv~~Al~r 316 (365)
T PLN03145 267 EEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEH----------------NDPVMCSKELVDEALKR 316 (365)
T ss_pred CCCEEEEEeCCccccCcCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHhC
Confidence 357788888877677899999988887777654 23468889999988753
No 25
>TIGR02178 yeiP elongation factor P-like protein YeiP. This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.
Probab=38.36 E-value=24 Score=25.99 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=26.2
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHHh
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLEN 36 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~ 36 (80)
+|.+.++||++.+..=||+.=+++++.+=+.||..
T Consensus 73 lY~dg~~~~FMD~etyEQ~~i~~~~lgd~~~fL~e 107 (186)
T TIGR02178 73 SYKDGEEYVFMDEEDYTPYTFDKDAIEDELLFISE 107 (186)
T ss_pred EEeCCCeEEEccCCCcEEEEeCHHHhhhhhhhhhC
Confidence 68788999999998899995555666555555543
No 26
>PRK00982 acpP acyl carrier protein; Provisional
Probab=38.09 E-value=56 Score=19.33 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChH-hhccCCHHHHHHHHHHh
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPD-LAKFATIDEAVAFLITN 66 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~d-L~k~~s~~~qaq~Lldt 66 (80)
...++...|++.+.- .+|++ +.+++|+.+-+.|+...
T Consensus 39 ~~~~li~~le~~f~i--------~i~~~~~~~~~ti~~l~~~l~~~ 76 (78)
T PRK00982 39 DTVELVMALEEEFGI--------EIPDEDAEKIKTVGDAVDYIEKH 76 (78)
T ss_pred HHHHHHHHHHHHHCC--------CcCHHHHHHcCcHHHHHHHHHHh
Confidence 345666666666522 35544 88899999999988653
No 27
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=37.70 E-value=48 Score=18.76 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=17.1
Q ss_pred ecCCCCccccCHHHHHHHHHHH
Q 034871 12 LEPGVEEKFVTEEELKARLKYW 33 (80)
Q Consensus 12 LEp~~~EqflT~~Ell~~Lk~~ 33 (80)
.+|..|+.|-|++||...+..+
T Consensus 3 ~~P~~P~~~aspeel~~Y~~~L 24 (36)
T PF00159_consen 3 SKPERPGDFASPEELAQYYAAL 24 (36)
T ss_dssp SSSSSSSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHH
Confidence 4678889999999987766553
No 28
>PRK05828 acyl carrier protein; Validated
Probab=36.48 E-value=50 Score=21.04 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.0
Q ss_pred cCHHHHHHHHHHHHHhh
Q 034871 21 VTEEELKARLKYWLENW 37 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~ 37 (80)
+|.+|++++++.+++..
T Consensus 1 m~~~eI~~~i~~ii~e~ 17 (84)
T PRK05828 1 MQEMEILLKIKEIAKKK 17 (84)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 58899999999999973
No 29
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=36.23 E-value=31 Score=20.17 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHhhh
Q 034871 22 TEEELKARLKYWLENWA 38 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~ 38 (80)
+.+++.++++..|..+.
T Consensus 36 ~~~~i~~~~~~~l~~~~ 52 (73)
T PF13193_consen 36 DEEEIRDHLRDKLPPYM 52 (73)
T ss_dssp HHHHHHHHHHHHS-GGG
T ss_pred eecccccchhhhCCCcc
Confidence 55899999999888883
No 30
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=35.22 E-value=13 Score=28.58 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=9.4
Q ss_pred cccccCCcccC
Q 034871 69 ELELQGDVGSI 79 (80)
Q Consensus 69 ELEi~pG~~~~ 79 (80)
-+|||||.|+.
T Consensus 34 VlEIGpG~GaL 44 (259)
T COG0030 34 VLEIGPGLGAL 44 (259)
T ss_pred EEEECCCCCHH
Confidence 58999999974
No 31
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=34.41 E-value=50 Score=20.38 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=18.6
Q ss_pred ccCceEEecCCCCccccCHHHHHHH
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKAR 29 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~ 29 (80)
..+++++..|+...+.+|.+|+.+.
T Consensus 94 ~~~~~~i~dp~~~~~~~~~~~l~~~ 118 (126)
T cd02425 94 KKNKVTIVDPAIGRIKISIDEFLEN 118 (126)
T ss_pred ECCEEEEEcCCCCCEEECHHHHHhh
Confidence 3456677889888778999888653
No 32
>PRK05350 acyl carrier protein; Provisional
Probab=34.23 E-value=66 Score=19.62 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHHHHhhh
Q 034871 21 VTEEELKARLKYWLENWA 38 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~ 38 (80)
+|.+++.+|++++|++..
T Consensus 2 m~~~~i~~~v~~ii~~~~ 19 (82)
T PRK05350 2 MTREEILERLRAILVELF 19 (82)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 578899999999998875
No 33
>PF11918 DUF3436: Domain of unknown function (DUF3436); InterPro: IPR024591 This uncharacterised N-terminal domain is associated with the interphotoreceptor retinol-binding protein family. It is about 50 amino acids in length and has two conserved sequence motifs: DPRL and SYEP.
Probab=33.83 E-value=35 Score=21.17 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=12.5
Q ss_pred ccCHHHHHHHHHHHH
Q 034871 20 FVTEEELKARLKYWL 34 (80)
Q Consensus 20 flT~~Ell~~Lk~~L 34 (80)
-||+|||+++|+.-+
T Consensus 37 ~Lt~EqLla~lq~~i 51 (55)
T PF11918_consen 37 NLTPEQLLAMLQKSI 51 (55)
T ss_pred CcCHHHHHHHHHhhe
Confidence 589999999998643
No 34
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.65 E-value=81 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred cccCHHHHHHHHHHHHHhhhccCCCCCCChH
Q 034871 19 KFVTEEELKARLKYWLENWAGQVGKGGLPPD 49 (80)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (80)
+-+|-+|.+.+|..+++++.. +++|-+
T Consensus 3 ~~~sfEeal~~LE~Iv~~LE~----~~l~Le 29 (76)
T PRK14063 3 NKLSFEEAISQLEHLVSKLEQ----GDVPLE 29 (76)
T ss_pred cccCHHHHHHHHHHHHHHHHC----CCCCHH
Confidence 347899999999999999987 488865
No 35
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=33.42 E-value=48 Score=17.79 Aligned_cols=13 Identities=46% Similarity=0.493 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHH
Q 034871 22 TEEELKARLKYWL 34 (80)
Q Consensus 22 T~~Ell~~Lk~~L 34 (80)
+.++|.++|++++
T Consensus 23 ~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 23 KKAELIERLKEHL 35 (35)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC
Confidence 3566777776654
No 36
>PF05201 GlutR_N: Glutamyl-tRNAGlu reductase, N-terminal domain; InterPro: IPR015895 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents the N-terminal domain of glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway [, ]. The enzyme requires NADPH as a cofactor.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process, 0055114 oxidation-reduction process; PDB: 1GPJ_A.
Probab=33.41 E-value=14 Score=25.63 Aligned_cols=61 Identities=28% Similarity=0.304 Sum_probs=28.3
Q ss_pred eEEecC-CCCccccCHH---HHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccccc
Q 034871 9 YVLLEP-GVEEKFVTEE---ELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (80)
Q Consensus 9 YVvLEp-~~~EqflT~~---Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 71 (80)
.|+|-+ |.-|=++... .....+.+||....+ +..+.++..+.- -+-++++.||++-+|=||
T Consensus 39 ~viLsTCNR~Eiy~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~-~~g~~a~~HLf~VasGLd 103 (152)
T PF05201_consen 39 AVILSTCNRVEIYVVSDDPEAGIDDVKEFLADFSG-VDPDELSEYLYV-YTGDEAVRHLFRVASGLD 103 (152)
T ss_dssp EEEEEETTEEEEEEES-TT-------HHHHH--------HTT-TT-EE-EEHHHHHHHHHHHHTTTT
T ss_pred EEEeecCCeEEEEEEeCcchhhHHHHHHHHHhhcc-cchhhhhcceEE-EcChHHHHHHHHHHhcch
Confidence 344443 4444444333 334556667766532 222345555544 446999999999999876
No 37
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=33.10 E-value=27 Score=18.52 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.6
Q ss_pred hhccCCHHHHHHHH
Q 034871 50 LAKFATIDEAVAFL 63 (80)
Q Consensus 50 L~k~~s~~~qaq~L 63 (80)
+..|+|+.++|++|
T Consensus 13 i~~F~Si~eAa~~l 26 (37)
T PF07453_consen 13 IKSFDSIREAARYL 26 (37)
T ss_pred EEEEcCHHHHHHHh
Confidence 68899999999987
No 38
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=32.79 E-value=27 Score=23.51 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=12.4
Q ss_pred ccCHHHHHHHHHHHHHh
Q 034871 20 FVTEEELKARLKYWLEN 36 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~ 36 (80)
-+|++||.+||+.--++
T Consensus 7 NMt~~EL~~WL~t~~S~ 23 (92)
T PF11338_consen 7 NMTPAELEDWLRTDESK 23 (92)
T ss_pred CCCHHHHHHHHcCcccc
Confidence 47999999888754443
No 39
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.22 E-value=1.1e+02 Score=19.48 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCCccccCHHHHHHHHHHHHHhhhccCCCCCCChH
Q 034871 15 GVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPD 49 (80)
Q Consensus 15 ~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (80)
..+.+-+|-++.+++|..++.++.. +++|-|
T Consensus 4 ~~~~~~~sfEea~~~LEeIv~~LE~----~~l~Le 34 (80)
T PRK00977 4 AKKSKPLSFEEALAELEEIVTRLES----GDLPLE 34 (80)
T ss_pred ccCCCcCCHHHHHHHHHHHHHHHHC----CCCCHH
Confidence 3455668999999999999999986 378865
No 40
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=31.43 E-value=91 Score=20.91 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=26.4
Q ss_pred ceEEecCCCCcccc------CHHHHHHHHHHHHHhhhccCCCCCCC
Q 034871 8 TYVLLEPGVEEKFV------TEEELKARLKYWLENWAGQVGKGGLP 47 (80)
Q Consensus 8 ~YVvLEp~~~Eqfl------T~~Ell~~Lk~~L~~~~~~~~~~~LP 47 (80)
.++++.+... ++. |.+.+.+++++.+...-..+...+||
T Consensus 84 ~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p 128 (130)
T cd02983 84 AMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPTLPVNGLP 128 (130)
T ss_pred EEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCcccccCCCCC
Confidence 4556666443 553 99999999999998775444445555
No 41
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.00 E-value=51 Score=26.50 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=37.2
Q ss_pred ccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHH-----HHHHHhcccccccC
Q 034871 18 EKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAV-----AFLITNVCELELQG 74 (80)
Q Consensus 18 EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qa-----q~Lldt~CELEi~p 74 (80)
+.-++.+||.++|-++..++ .|-++.|+-+--+++ ..+++-+||||.-+
T Consensus 153 ~~~~~geelfe~lDe~F~rL--------ip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d 206 (315)
T COG4030 153 IASLSGEELFEKLDELFSRL--------IPSEVGKIVESVKAVGGGEKAKIMEGYCELEGID 206 (315)
T ss_pred cccccHHHHHHHHHHHHhhc--------CHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCC
Confidence 44578899999999999988 677777775544332 46899999998644
No 42
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=30.97 E-value=77 Score=17.97 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=17.9
Q ss_pred ecCCCCccccCHHHHHHHHHHH
Q 034871 12 LEPGVEEKFVTEEELKARLKYW 33 (80)
Q Consensus 12 LEp~~~EqflT~~Ell~~Lk~~ 33 (80)
.+|..|..|-|++||...++++
T Consensus 3 ~~P~~Pg~~a~~eel~~Y~~~L 24 (36)
T cd00126 3 SKPENPGDDASPEELRQYLAAL 24 (36)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH
Confidence 4678889999999998877764
No 43
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=30.66 E-value=82 Score=20.83 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhc
Q 034871 26 LKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNV 67 (80)
Q Consensus 26 ll~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~ 67 (80)
+++-|+..|++.|-.--+-.+|-.-++..|-++-++||.++-
T Consensus 2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~ 43 (84)
T cd04436 2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENM 43 (84)
T ss_pred HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcC
Confidence 344455556665532233456666666677777777776653
No 44
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=30.13 E-value=70 Score=23.00 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred EEecCCCCccccCHHHHHHHHHHHHHhhhc
Q 034871 10 VLLEPGVEEKFVTEEELKARLKYWLENWAG 39 (80)
Q Consensus 10 VvLEp~~~EqflT~~Ell~~Lk~~L~~~~~ 39 (80)
+||-||.+ .+|.+|+.+||...-.+-|+
T Consensus 26 dvlHPG~a--~vsK~EirEKla~mYkt~~d 53 (132)
T KOG3424|consen 26 DVLHPGKA--NVSKTEIREKLAKMYKTTPD 53 (132)
T ss_pred EEecCCCC--CCCHHHHHHHHHHHhcCCcc
Confidence 58899986 69999999999999888765
No 45
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=29.93 E-value=34 Score=19.86 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=7.5
Q ss_pred cccCHHHHHH
Q 034871 19 KFVTEEELKA 28 (80)
Q Consensus 19 qflT~~Ell~ 28 (80)
.|||++||.+
T Consensus 1 ~fLT~~El~e 10 (47)
T PF13986_consen 1 EFLTDEELQE 10 (47)
T ss_pred CCCCHHHHHH
Confidence 3788888864
No 46
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=28.52 E-value=79 Score=20.13 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.7
Q ss_pred cccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccC
Q 034871 19 KFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFA 54 (80)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~ 54 (80)
+.=|++....||.-..... +||+++.+|.
T Consensus 11 ~~Ws~~~V~~WL~w~~~ef-------~L~~~~~~F~ 39 (76)
T cd08532 11 YQWSPANVQKWLLWTEHQY-------RLPPPPRCFE 39 (76)
T ss_pred hhcCHHHHHHHHHHHHHHh-------CCCCchhcCC
Confidence 4569999999999999988 6888888883
No 47
>PRK04542 elongation factor P; Provisional
Probab=28.39 E-value=45 Score=24.65 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=24.8
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (80)
+|.+.++||++.+..=||+-=+.+++.+=..||.
T Consensus 75 lY~dg~~~~FMd~etyEQ~~i~~~~lgd~~~~L~ 108 (189)
T PRK04542 75 SYIDGDEYVFMDNEDYTPYTFKKDQIEDELLFIP 108 (189)
T ss_pred EEeCCCEEEEecCCCceEEEECHHHhhhHhhhhh
Confidence 5877899999999889999444456654455554
No 48
>PRK10853 putative reductase; Provisional
Probab=27.63 E-value=1.6e+02 Score=19.63 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=27.9
Q ss_pred ccccCHHHHHHHHHH-----HHHhhhccCCCCCCChHh-hccCCHHHHHHHHHHh
Q 034871 18 EKFVTEEELKARLKY-----WLENWAGQVGKGGLPPDL-AKFATIDEAVAFLITN 66 (80)
Q Consensus 18 EqflT~~Ell~~Lk~-----~L~~~~~~~~~~~LP~dL-~k~~s~~~qaq~Lldt 66 (80)
++-+|.+||..||+. ++.+.. .....|..+. ...+|.+++++-|+++
T Consensus 34 k~p~s~~eL~~~l~~~g~~~l~n~~~--~~~r~L~~~~k~~~~~~~e~~~ll~~~ 86 (118)
T PRK10853 34 VDGLDSELLQGFIDELGWEALLNTRG--TTWRKLDETQRNAITDAASAAALMLEQ 86 (118)
T ss_pred cCCcCHHHHHHHHHHcCHHHHHhcCC--chHHhCCHhHhhcCCCHHHHHHHHHhC
Confidence 567899999999963 333331 1122455554 2455667777766654
No 49
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=27.52 E-value=67 Score=24.30 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=35.5
Q ss_pred ceEEecC-CCCccccCHH---HHHHHHHHHHHhhhccCCCCCCChHh---hccCCHHHHHHHHHHhccccc
Q 034871 8 TYVLLEP-GVEEKFVTEE---ELKARLKYWLENWAGQVGKGGLPPDL---AKFATIDEAVAFLITNVCELE 71 (80)
Q Consensus 8 ~YVvLEp-~~~EqflT~~---Ell~~Lk~~L~~~~~~~~~~~LP~dL---~k~~s~~~qaq~Lldt~CELE 71 (80)
..|+|-+ |.-|=.+... .....+.+||..+.+ +| ++ ..+..-++++.||+.-+|=||
T Consensus 41 e~viLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~------~~-~~~~~~~~~~~~~a~~HLf~Va~GLd 104 (311)
T cd05213 41 EAVLLSTCNRVELYLVGDNFHKLADELEELLAELLN------EP-ELREYLYVGRGQDAVRHLFRVASGLD 104 (311)
T ss_pred eEEEEecCCeEEEEEEeCCcchhHHHHHHHHHHhcC------ch-HhhhhheeecCHHHHHHHHHHHhhhh
Confidence 4566666 5555554322 245567788877743 44 33 223445799999999999776
No 50
>PRK12426 elongation factor P; Provisional
Probab=27.21 E-value=46 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=24.7
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (80)
+|.+.|+||++.+..=||+-=+.+++..=..||.
T Consensus 73 lY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~ 106 (185)
T PRK12426 73 LYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLK 106 (185)
T ss_pred EEECCCeEEEecCCCceEEEeCHHHhhhHHhhcc
Confidence 6878899999999999999444455554445543
No 51
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=26.83 E-value=1.1e+02 Score=19.15 Aligned_cols=37 Identities=35% Similarity=0.293 Sum_probs=28.3
Q ss_pred cccCHHHH----HHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHh
Q 034871 19 KFVTEEEL----KARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (80)
Q Consensus 19 qflT~~El----l~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 66 (80)
.|=|.+|| +++||.-|+.+ .|..=.|+.+.|++|.-+
T Consensus 5 ~f~sa~eLe~lGldrLK~~L~a~-----------GLKcGGTl~ERA~RLfs~ 45 (60)
T PF13297_consen 5 AFSSAEELEALGLDRLKSALMAL-----------GLKCGGTLQERAARLFSV 45 (60)
T ss_pred hcCCHHHHHHhCHHHHHHHHHHc-----------CCccCCCHHHHHHHHHHh
Confidence 45677777 57899999888 345558999999999754
No 52
>PRK12449 acyl carrier protein; Provisional
Probab=26.82 E-value=77 Score=18.93 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=12.3
Q ss_pred cCHHHHHHHHHHHHHhh
Q 034871 21 VTEEELKARLKYWLENW 37 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~ 37 (80)
+|.+++.+|++.+++..
T Consensus 1 m~~~~i~~~l~~il~~~ 17 (80)
T PRK12449 1 MTREEIFERLINLIQKQ 17 (80)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 36677788888887764
No 53
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=26.39 E-value=26 Score=19.04 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHhcc
Q 034871 55 TIDEAVAFLITNVC 68 (80)
Q Consensus 55 s~~~qaq~Lldt~C 68 (80)
|+++||+.||+.+=
T Consensus 4 sv~~qV~~LI~~At 17 (33)
T PF02260_consen 4 SVEQQVDELISEAT 17 (33)
T ss_dssp -STHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc
Confidence 67889999998653
No 54
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=26.32 E-value=82 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=16.6
Q ss_pred cCceEEecCCCCccccCHHHHHHH
Q 034871 6 TETYVLLEPGVEEKFVTEEELKAR 29 (80)
Q Consensus 6 ~D~YVvLEp~~~EqflT~~Ell~~ 29 (80)
.+.+++..|....+.+|.+|+.+.
T Consensus 100 ~~~~~i~dp~~~~~~~~~~ef~~~ 123 (136)
T cd02418 100 KKKILIADPAVGITKISKEEFEKE 123 (136)
T ss_pred CCEEEEECCCCCCEEeeHHHHHhh
Confidence 344556678777778888887653
No 55
>PRK00529 elongation factor P; Validated
Probab=26.11 E-value=56 Score=23.52 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=23.1
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (80)
+|.+.|+|++|.+..-||+-=+.+.+..-..||.
T Consensus 73 ly~dgd~~~fMD~etyeq~~l~~~~lg~~~~~L~ 106 (186)
T PRK00529 73 LYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLK 106 (186)
T ss_pred EEECCCEEEEecCCCceeeEcCHHHhHHHHhhcc
Confidence 5767789999999877888544555544445553
No 56
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=26.03 E-value=65 Score=20.80 Aligned_cols=24 Identities=29% Similarity=0.191 Sum_probs=18.7
Q ss_pred CCCccccCHHHHHHHHHHHHHhhh
Q 034871 15 GVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 15 ~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
|+.=.--|++||+++++..+.+.|
T Consensus 53 G~~V~A~t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 53 GEIVAAETAEELLEKIKEKIEENP 76 (78)
T ss_pred CEEEecCCHHHHHHHHHHHHhccc
Confidence 444455699999999999988764
No 57
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.79 E-value=1e+02 Score=24.16 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 69 (80)
..+..+++++|+..+ .||..|+.+.=-++....+.+.++.
T Consensus 320 a~~~i~~i~~l~~~l-------glP~~L~e~gv~~~~~~~ia~~a~~ 359 (383)
T PRK09860 320 AEACINAIRELAKKV-------DIPAGLRDLNVKEEDFAVLATNALK 359 (383)
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHHh
Confidence 356788999999998 7998888876555666667666543
No 58
>PRK04081 hypothetical protein; Provisional
Probab=25.59 E-value=1.1e+02 Score=23.57 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=24.2
Q ss_pred eEEecCCCCccccCHHHHHHHHHHHHHhhh
Q 034871 9 YVLLEPGVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 9 YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
-||=+++-.|++||.+|+.+-+++--.+..
T Consensus 74 vilr~~dG~ER~LS~eE~dkLi~eE~~KId 103 (207)
T PRK04081 74 VVLRDLDGTERVLSQEEIDKLIKEEEAKID 103 (207)
T ss_pred EEEecCCCcccccCHHHHHHHHHHHHHhhc
Confidence 344466889999999999999988777664
No 59
>PF12939 DUF3837: Domain of unknown function (DUF3837); InterPro: IPR024212 This entry represents a small, compact all-alpha helical domain of unknown function. This domain is currently only found in Clostridiales species.
Probab=25.38 E-value=95 Score=21.31 Aligned_cols=40 Identities=25% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccccc
Q 034871 16 VEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (80)
Q Consensus 16 ~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 71 (80)
.||.--|+-||++.|...+.+. ++-+++.++|+-=-|++.
T Consensus 42 ~pe~~~~~~eLk~~l~~~~~~~----------------~p~de~~k~l~~lL~~y~ 81 (102)
T PF12939_consen 42 IPEGDETPFELKEKLQKDIDKI----------------SPEDEREKKLISLLKDYI 81 (102)
T ss_pred CcccccCHHHHHHHHHHhccCC----------------CCchHHHHHHHHHHHhcC
Confidence 4566778888888887766655 345677777776666655
No 60
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=25.28 E-value=61 Score=21.57 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.5
Q ss_pred cccCHHHHHHHHHHHHHhh
Q 034871 19 KFVTEEELKARLKYWLENW 37 (80)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~ 37 (80)
+|+|++|..+|+-+|-.+-
T Consensus 61 r~v~heEv~a~i~~~~tk~ 79 (83)
T COG3905 61 RFVTHEEVIAWIDSWGTKN 79 (83)
T ss_pred CcCCHHHHHHHHHhhcCcc
Confidence 6999999999998875543
No 61
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=25.13 E-value=1.1e+02 Score=25.41 Aligned_cols=35 Identities=9% Similarity=0.293 Sum_probs=30.4
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHh-hhc
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLEN-WAG 39 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~-~~~ 39 (80)
..|.|+||-.+-==++||.+|...-..+|+.+ .|+
T Consensus 328 p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd 363 (390)
T KOG0700|consen 328 PNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPD 363 (390)
T ss_pred CCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCC
Confidence 46999999999989999999999998888887 443
No 62
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=25.07 E-value=1.4e+02 Score=21.06 Aligned_cols=41 Identities=22% Similarity=0.096 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccccc
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 71 (80)
|++|++++|+++=..+ =++..-=.|..+-+|++.+===||+
T Consensus 1 tKee~l~RL~eLa~~L---------GRE~d~SGSaAeiaqRVAEwEEEl~ 41 (125)
T PF14000_consen 1 TKEENLARLRELAAQL---------GREPDMSGSAAEIAQRVAEWEEELD 41 (125)
T ss_pred ChHHHHHHHHHHHHHh---------CcCCCccccHHHHHHHHHHHHHHHh
Confidence 7899999998865444 3445555888899998877555554
No 63
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=24.55 E-value=50 Score=25.76 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=16.5
Q ss_pred cccCHHHHHHHHHHHHHh
Q 034871 19 KFVTEEELKARLKYWLEN 36 (80)
Q Consensus 19 qflT~~Ell~~Lk~~L~~ 36 (80)
+|+|++|.+.+|++|+-.
T Consensus 91 ~~~sre~~l~~L~~~lg~ 108 (297)
T COG2177 91 RFISREEALKELQPWLGF 108 (297)
T ss_pred EEeCHHHHHHHHHHHcCc
Confidence 799999999999999983
No 64
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.44 E-value=55 Score=24.06 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.1
Q ss_pred CCccccCHHHHHHHHH
Q 034871 16 VEEKFVTEEELKARLK 31 (80)
Q Consensus 16 ~~EqflT~~Ell~~Lk 31 (80)
.+|+|+||++.+.+.+
T Consensus 97 EDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 97 EDEQPITPESFKERMA 112 (156)
T ss_pred ccCCccCHHHHHHHhh
Confidence 6899999999998865
No 65
>PLN00203 glutamyl-tRNA reductase
Probab=24.39 E-value=1.3e+02 Score=25.26 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=37.1
Q ss_pred ceEEecC-CCCccccC---HHHHHHHHHHHHHhhhccCCCCCCChH-hh---ccCCHHHHHHHHHHhccccc
Q 034871 8 TYVLLEP-GVEEKFVT---EEELKARLKYWLENWAGQVGKGGLPPD-LA---KFATIDEAVAFLITNVCELE 71 (80)
Q Consensus 8 ~YVvLEp-~~~EqflT---~~Ell~~Lk~~L~~~~~~~~~~~LP~d-L~---k~~s~~~qaq~Lldt~CELE 71 (80)
..|||-+ |.-|=.+. .......+.+||.++.+ +|.+ +. .+-.-+++++||+.-+|=||
T Consensus 125 e~viLSTCNR~EiY~~~~~~~~~~~~v~~~l~~~~~------~~~~~l~~~~~~~~g~~Av~HLfrVasGLD 190 (519)
T PLN00203 125 EAAVLSTCNRMEIYVVALSWHRGVKEVTEWMSKTSG------IPVSELRQHLFLLYDKDATQHLFEVSGGLD 190 (519)
T ss_pred eEEEEeccCeEEEEEEecCcchhHHHHHHHHHHhcC------CCHHHHhhhheeecCHHHHHHHHHHHhhhh
Confidence 3555555 55555543 23345677788888743 5533 32 24556899999999999876
No 66
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=24.27 E-value=1.1e+02 Score=23.42 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
.++..+++++|+.++ .+|..|+.+.=-++....+.+.++
T Consensus 310 ~~~~~~~i~~l~~~l-------glp~~L~e~gv~~~~~~~~a~~a~ 348 (370)
T cd08192 310 FADFADAILALNARL-------GIPHTLRELGVDEDDLDRIAEKAL 348 (370)
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHH
Confidence 467889999999998 699888777544555566666554
No 67
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.
Probab=24.01 E-value=8.9 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=22.4
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWL 34 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L 34 (80)
+|.+.|+||++.+..=||+-=+.+.+..-..||
T Consensus 7 lY~dgd~~~FMd~etyeQi~v~~~~~g~~~~~L 39 (55)
T PF01132_consen 7 LYKDGDNYVFMDTETYEQIEVPKDQLGDALKFL 39 (55)
T ss_dssp EEEESSEEEEEETTT--EEEEEHHHHTTTGCC-
T ss_pred EEeCCCEEEEecCCCceEEEecHHHhChHHhhC
Confidence 577889999999999898876666664444444
No 68
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=24.01 E-value=1.2e+02 Score=23.24 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
+++..++|++|+..+ .+|..|+.+.=-++....+.+.++
T Consensus 311 ~~~~~~~l~~~~~~l-------glp~~L~e~gi~~~~~~~ia~~a~ 349 (370)
T cd08551 311 ANAAIAAIRKLNKEL-------GIPTSLADLGVKEEDIDKLAELAM 349 (370)
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHH
Confidence 356788999999998 699888877533445555555444
No 69
>PTZ00224 protein phosphatase 2C; Provisional
Probab=23.73 E-value=2.6e+02 Score=22.41 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred CceEEecCC-CCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccc
Q 034871 7 ETYVLLEPG-VEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (80)
Q Consensus 7 D~YVvLEp~-~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 69 (80)
+.|+||-.+ --+..+|.+|+.+-++..+++. .+.+++|+.|++.+++
T Consensus 209 ~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~----------------~~~~~aA~~Lv~~A~~ 256 (381)
T PTZ00224 209 NDFIILACDGVFEGNFSNEEVVAFVKEQLETC----------------DDLAVVAGRVCDEAIR 256 (381)
T ss_pred CCEEEEECCCcCcCccCHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHh
Confidence 446777664 4455899999987776554332 3567899999998865
No 70
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=23.47 E-value=1.3e+02 Score=22.98 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHh
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 66 (80)
.+.+.+++++|+.++ .+|..|+.+.=-++....+.+.
T Consensus 279 ~~~~~~~i~~l~~~l-------glp~~l~e~gi~~~~~~~~~~~ 315 (337)
T cd08177 279 AADAADALADLARSL-------GAPTSLADLGVPRDDIDRAAEL 315 (337)
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHH
Confidence 567789999999999 6998888876555555555553
No 71
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=23.37 E-value=1.1e+02 Score=19.06 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=16.9
Q ss_pred cCceEEecCCCCccccCHHHHHHH
Q 034871 6 TETYVLLEPGVEEKFVTEEELKAR 29 (80)
Q Consensus 6 ~D~YVvLEp~~~EqflT~~Ell~~ 29 (80)
.+.+++..|+...+.+|.+|+.+.
T Consensus 94 ~~~~~i~dp~~~~~~~s~~el~~~ 117 (125)
T cd02420 94 KRKVFLNDPATGRRTVSLEEFDQS 117 (125)
T ss_pred CCEEEEECCCcCceeecHHHHHhh
Confidence 455667788776778888887654
No 72
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=23.37 E-value=71 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=24.5
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (80)
+|.+.|+|++|.+..-||+-=+.+++..-..||.
T Consensus 72 ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~ 105 (184)
T TIGR00038 72 LYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLK 105 (184)
T ss_pred EEECCCEEEEeCCCCccceEcCHHHHHHHHhhcC
Confidence 5766789999998888888555666655555554
No 73
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.24 E-value=62 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.260 Sum_probs=12.4
Q ss_pred HhcccccccCCcccC
Q 034871 65 TNVCELELQGDVGSI 79 (80)
Q Consensus 65 dt~CELEi~pG~~~~ 79 (80)
.+.+-+|||||.|.+
T Consensus 30 ~~~~VlEiGpG~G~l 44 (262)
T PF00398_consen 30 EGDTVLEIGPGPGAL 44 (262)
T ss_dssp TTSEEEEESSTTSCC
T ss_pred CCCEEEEeCCCCccc
Confidence 467789999999974
No 74
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=23.23 E-value=55 Score=22.49 Aligned_cols=19 Identities=11% Similarity=-0.141 Sum_probs=16.2
Q ss_pred CccccCceEEecCCCCccc
Q 034871 2 AYSRTETYVLLEPGVEEKF 20 (80)
Q Consensus 2 my~q~D~YVvLEp~~~Eqf 20 (80)
+|.+.|.|++|.+..-||+
T Consensus 79 lY~dg~~~~fMd~etyeq~ 97 (130)
T TIGR00037 79 LAIMGGMVQLMDLDTYETD 97 (130)
T ss_pred EEecCCEEEEEcCCCcEEE
Confidence 5767789999999888887
No 75
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=23.20 E-value=2.5e+02 Score=19.02 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=33.5
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHH
Q 034871 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLI 64 (80)
Q Consensus 7 D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Ll 64 (80)
+..+.++|-..-+++|.+|+..+|+..... . .+.++.-+-.|..+-..+++
T Consensus 101 ~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~-~------~~~~~~l~p~s~~eil~R~l 151 (152)
T PF13369_consen 101 DGEFYIDPFNGGRLLSREELERLLSRMGGP-A------ELDPEYLKPASPREILLRML 151 (152)
T ss_pred CCcEEEccCCCCccCCHHHHHHHHHhccCc-c------cCCHHHhCCCCHHHHHHHHh
Confidence 445889998877899999998888776544 1 24444444455555555543
No 76
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=23.13 E-value=97 Score=20.91 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=33.2
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHh
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDL 50 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL 50 (80)
+-|=.|-.+|+ ..++.-.++...|.+||...=+.+.++++.+.+
T Consensus 43 DIDILVef~~~--~~ll~~~~l~~~L~~llg~~VDL~t~~ai~p~l 86 (97)
T COG1669 43 DIDILVEFEPG--KTLLDLVRLEDELSDLLGRKVDLVTKDAIHPRL 86 (97)
T ss_pred CceeEEeecCC--ccHHHHHHHHHHHHHHhCCeeeeecccccCHHH
Confidence 33455666676 889999999999999997666777777777653
No 77
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=22.93 E-value=47 Score=22.63 Aligned_cols=34 Identities=26% Similarity=0.157 Sum_probs=24.3
Q ss_pred ChHhhccCCHHHHHHHHHH--hcccccccCCcccCC
Q 034871 47 PPDLAKFATIDEAVAFLIT--NVCELELQGDVGSIQ 80 (80)
Q Consensus 47 P~dL~k~~s~~~qaq~Lld--t~CELEi~pG~~~~~ 80 (80)
+-|--=|++...-+++|-+ .-+++++=||+.|+|
T Consensus 84 ~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~ 119 (210)
T PF00590_consen 84 SGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQ 119 (210)
T ss_dssp SBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHH
T ss_pred CCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHH
Confidence 4444456777788888888 788899999998875
No 78
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=22.79 E-value=55 Score=22.63 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.5
Q ss_pred CccccCceEEecCCCCccccCHHHHHHHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKARLKYWLE 35 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~ 35 (80)
.|.+.|.||++.+..=||+-=+.+...+.+.||.
T Consensus 75 lY~dg~~~~FMD~etyeq~~v~~~~~~d~~~~l~ 108 (131)
T COG0231 75 LYIDGDFYVFMDLETYEQYELPKDQIGDAAKFLK 108 (131)
T ss_pred EEcCCCeEEEccCCCceEEEecchhhhhHHHhcC
Confidence 4778899999999999998777777777766664
No 79
>TIGR00636 PduO_Nterm ATP:cob(I)alamin adenosyltransferase. This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens.
Probab=22.78 E-value=1.9e+02 Score=20.84 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhcc----CCHHHHHHHHHHhcc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 68 (80)
.+|-.+||+.|+..+.. .||+ +..| .|...++-|+..|.|
T Consensus 78 ~~~~v~~LE~~id~~~~-----~l~~-l~~FiLPggs~~~A~lh~aRtv~ 121 (171)
T TIGR00636 78 TEEDVKWLEERIDQYRK-----ELPP-LKLFVLPGGTPAAAFLHVARTVA 121 (171)
T ss_pred CHHHHHHHHHHHHHHHh-----hCCC-CCceeeCCCCHHHHHHHHHHHHH
Confidence 45567889999998864 3442 2222 788888888888887
No 80
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=22.73 E-value=1.4e+02 Score=16.99 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=15.9
Q ss_pred cCCCCccccCHHHHHHHHHHH
Q 034871 13 EPGVEEKFVTEEELKARLKYW 33 (80)
Q Consensus 13 Ep~~~EqflT~~Ell~~Lk~~ 33 (80)
.|..|..+-|++||...++++
T Consensus 4 ~P~~Pg~~a~~e~l~~Y~~~L 24 (36)
T smart00309 4 KPERPGDDASPEDLRQYLAAL 24 (36)
T ss_pred CCCCCCCCCCHHHHHHHHHHH
Confidence 577888899999977666543
No 81
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=22.71 E-value=2.2e+02 Score=18.20 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccc
Q 034871 20 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 69 (80)
-||++|+ .++|..|.+.+..-|...+|..--+-.|..+=|..|++.+.+
T Consensus 9 ~L~~~El-kkFK~~L~~~~~~~~~~~Ip~~~le~ad~~dLa~lLv~~y~~ 57 (86)
T cd08320 9 ELSKEEL-KKFKLLLKTEPLQSGLKPIPWTEVKKADGEDLAELLVEHYGG 57 (86)
T ss_pred HcCHHHH-HHHHHHHhccchhccCCCCChHhHhcCCHHHHHHHHHHHcCh
Confidence 4677776 467888888764445678887766667888889999988765
No 82
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=22.69 E-value=1.3e+02 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 24 EELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 24 ~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
++..+++++|+..+ .||..|+.+.=-++....+.+.++
T Consensus 320 ~~~~~~i~~l~~~l-------glp~~L~e~gv~~~~~~~~a~~a~ 357 (382)
T PRK10624 320 NAAVEAVKALNRDV-------GIPPHLRDVGVKEEDIPALAQAAF 357 (382)
T ss_pred HHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHH
Confidence 45778899999988 699988887655566666666554
No 83
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.66 E-value=1.3e+02 Score=17.32 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChH
Q 034871 24 EELKARLKYWLENWAGQVGKGGLPPD 49 (80)
Q Consensus 24 ~Ell~~Lk~~L~~~~~~~~~~~LP~d 49 (80)
+|.+.+|..+++++.. +++|-|
T Consensus 2 Ee~~~~Le~Iv~~Le~----~~~sLd 23 (53)
T PF02609_consen 2 EEAMERLEEIVEKLES----GELSLD 23 (53)
T ss_dssp HHHHHHHHHHHHHHHT----T-S-HH
T ss_pred HHHHHHHHHHHHHHHc----CCCCHH
Confidence 6788999999999986 377753
No 84
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=22.58 E-value=1.7e+02 Score=21.91 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=29.3
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCChHhhcc----CCHHHHHHHHHHhcc
Q 034871 20 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 68 (80)
.+| +|-+.||..++..+.. .+|+ |..| .|..+++-|.-.|.|
T Consensus 84 ~i~-~e~v~~LE~~id~y~~-----~l~~-l~~FiLPGgs~~aA~lh~ARtv~ 129 (184)
T COG2096 84 RIT-EEDVKRLEKRIDAYNA-----ELPP-LKSFVLPGGSPAAAALHVARTVA 129 (184)
T ss_pred ccC-HHHHHHHHHHHHHHHh-----cCCC-cceeeccCCCHHHHHHHHHHHHH
Confidence 344 5667899999999975 3432 3333 688888888877776
No 85
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=22.52 E-value=1.3e+02 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.373 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 69 (80)
.+++.+++++|+..+ .+|.-|..+.=-++....+.+.++.
T Consensus 315 ~~~~~~~~~~l~~~l-------glp~~L~e~gi~~~~~~~~a~~a~~ 354 (376)
T cd08193 315 AEALIDAMEALVADL-------GIPQRLREVGVTEDDLPMLAEDAMK 354 (376)
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHHh
Confidence 457888999999998 6998887776445666666665543
No 86
>PRK13669 hypothetical protein; Provisional
Probab=22.46 E-value=87 Score=20.43 Aligned_cols=25 Identities=28% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCCCccccCHHHHHHHHHHHHHhhh
Q 034871 14 PGVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 14 p~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
-|+.-.--|++||+++++..|...|
T Consensus 52 ng~~V~a~t~eeL~~kI~~~i~e~~ 76 (78)
T PRK13669 52 NGEVVEGETPEELVENIYAHLEENP 76 (78)
T ss_pred CCeEeecCCHHHHHHHHHHHHhhcC
Confidence 4555666799999999999988753
No 87
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.41 E-value=1.3e+02 Score=23.40 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 24 EELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 24 ~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
++..++|++|+..+ .||..|+.+.=-++....+.+.++
T Consensus 327 ~~~~~~l~~l~~~l-------glP~~L~e~gv~~~~~~~~a~~a~ 364 (386)
T cd08191 327 AAAITRVEALLAAI-------GIPTTLAALGVTEADLDGVAAQAL 364 (386)
T ss_pred HHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHH
Confidence 46788999999998 799988887644556666666554
No 88
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=22.29 E-value=46 Score=24.50 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccccccCCcccCC
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 80 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pG~~~~~ 80 (80)
+.+++.+.++..+.+-.. |.+ --.-|-.=|++...-+++|.+...++|+=||+.|+|
T Consensus 65 ~~~~i~~~i~~~~~~g~~-Vv~-L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~ 121 (257)
T PRK15473 65 HLEQIIDLMEAGVKAGKT-VVR-LQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFL 121 (257)
T ss_pred CHHHHHHHHHHHHHCCCe-EEE-EeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHH
Confidence 456777777766544210 000 012232335666677777777667999999999986
No 89
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=22.18 E-value=83 Score=23.38 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=18.3
Q ss_pred ccccCceEEecCCCCccccCHHHHHHHHHHHHHhh
Q 034871 3 YSRTETYVLLEPGVEEKFVTEEELKARLKYWLENW 37 (80)
Q Consensus 3 y~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~ 37 (80)
| ++|.||+| +.+||++|+ +.|+..+...
T Consensus 25 f-~~dGyvvl-----~~vls~eev-~~lr~~i~~~ 52 (277)
T TIGR02408 25 Y-ERDGFLLL-----ENLFSDDEV-AALLAEVERM 52 (277)
T ss_pred H-HHCCEEEC-----cccCCHHHH-HHHHHHHHHH
Confidence 5 78999998 468887664 3344444443
No 90
>PLN03051 acyl-activating enzyme; Provisional
Probab=22.15 E-value=1.4e+02 Score=23.06 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=17.3
Q ss_pred EecCCCCccccCHHHHHHHHHHHHHh
Q 034871 11 LLEPGVEEKFVTEEELKARLKYWLEN 36 (80)
Q Consensus 11 vLEp~~~EqflT~~Ell~~Lk~~L~~ 36 (80)
|+.++.. -++.+|++++++..|.+
T Consensus 432 v~~~~~~--~~~~~~l~~~~~~~l~~ 455 (499)
T PLN03051 432 EEKKGFD--QARPEALQKKFQEAIQT 455 (499)
T ss_pred eeccccc--ccchHHHHHHHHHHHHh
Confidence 6666642 26889999999887754
No 91
>PRK07788 acyl-CoA synthetase; Validated
Probab=22.00 E-value=93 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=20.4
Q ss_pred ceEEecCCCCccccCHHHHHHHHHHHHHhh
Q 034871 8 TYVLLEPGVEEKFVTEEELKARLKYWLENW 37 (80)
Q Consensus 8 ~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~ 37 (80)
-||++.++. -++.+++++++++.|..+
T Consensus 494 a~vv~~~~~---~~~~~~l~~~~~~~l~~~ 520 (549)
T PRK07788 494 AFVVKAPGA---ALDEDAIKDYVRDNLARY 520 (549)
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHhhhcC
Confidence 366666643 368899999999988776
No 92
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=21.62 E-value=83 Score=24.20 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=48.2
Q ss_pred EecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhh-ccCCHHHHHHHHHHhcccccccCC
Q 034871 11 LLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLA-KFATIDEAVAFLITNVCELELQGD 75 (80)
Q Consensus 11 vLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~-k~~s~~~qaq~Lldt~CELEi~pG 75 (80)
|+-+.....++|++.|..-+++-|...-|.+..-+||.-|. .+..++.+|+.++..-..+-+-.|
T Consensus 41 li~T~dGkeyiT~~~L~~EI~~el~~~gGRv~~~dL~~~LnVd~~~ie~~~~~i~~~~~~~~l~~g 106 (272)
T PF09743_consen 41 LIHTTDGKEYITPEQLEKEIKDELYVHGGRVNLVDLAQALNVDLDHIERRAQEIVKSDKSLQLVQG 106 (272)
T ss_pred EEEECCCCEEECHHHHHHHHHHHHHHcCCceEHHHHHHhcCcCHHHHHHHHHHHHhCCCcEEEECC
Confidence 55566678999999999999998877776655556665553 456788899998887766655443
No 93
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=21.50 E-value=1.9e+02 Score=17.18 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhh
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLA 51 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~ 51 (80)
|.+|++..++.-...--+ -..+|+++.
T Consensus 21 tedEll~~~~~Ha~~~Hg---~~~~~~el~ 47 (57)
T PF06348_consen 21 TEDELLEAVVEHAREVHG---MTEIPEELR 47 (57)
T ss_pred CHHHHHHHHHHHHHHhcC---CccCCHHHH
Confidence 678999999998888754 367888764
No 94
>cd02423 Peptidase_C39G A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=21.45 E-value=1.2e+02 Score=18.71 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=17.7
Q ss_pred cCceEEecCCCCccccCHHHHHHHH
Q 034871 6 TETYVLLEPGVEEKFVTEEELKARL 30 (80)
Q Consensus 6 ~D~YVvLEp~~~EqflT~~Ell~~L 30 (80)
.+.+++..|+.+.+-+|.+|+.+..
T Consensus 98 ~~~~~i~dp~~~~~~~s~~el~~~w 122 (129)
T cd02423 98 GDRVLVGDPALGNISMSREEFERIW 122 (129)
T ss_pred CCEEEEECCCCCCcccCHHHHHHHh
Confidence 4456666787777788888877643
No 95
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=21.31 E-value=1.4e+02 Score=23.17 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
.++..+++++|+.++ .+|..|+.+.=-++....+.+.++
T Consensus 320 ~~~~~~~i~~l~~~l-------glp~~L~e~gv~~~~~~~~a~~a~ 358 (379)
T TIGR02638 320 RDAAVEAVKTLSKRV-------GIPEGLSELGVKEEDIPALAEAAL 358 (379)
T ss_pred HHHHHHHHHHHHHHC-------CCCCCHHHcCCCHHHHHHHHHHHH
Confidence 356788999999998 799988877544555666655543
No 96
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=21.25 E-value=66 Score=22.07 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=29.1
Q ss_pred CCCCccccCH-HHHHHHHHHH--HHhhhccCCCCCCChHhhccCCHHHHHHHH
Q 034871 14 PGVEEKFVTE-EELKARLKYW--LENWAGQVGKGGLPPDLAKFATIDEAVAFL 63 (80)
Q Consensus 14 p~~~EqflT~-~Ell~~Lk~~--L~~~~~~~~~~~LP~dL~k~~s~~~qaq~L 63 (80)
|++|++|+.. .+|=+-++.| |++.| +|=+.+.++..+..-+.-|
T Consensus 50 ~ddP~KFmdSE~dLd~~Ik~l~~La~~P------~LYp~lv~l~~v~sL~~LL 96 (108)
T PF08216_consen 50 PDDPEKFMDSEVDLDEEIKKLSVLATAP------ELYPELVELGAVPSLLGLL 96 (108)
T ss_pred CCCHHHHHHhHHHHHHHHHHHHHccCCh------hHHHHHHHcCCHHHHHHHH
Confidence 7899999954 4555555554 55555 4677777777776555544
No 97
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=21.21 E-value=86 Score=22.40 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred CceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhc
Q 034871 7 ETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNV 67 (80)
Q Consensus 7 D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~ 67 (80)
|.|+||-.+-==.+|+.+|+..-++..+.... +...+|+.|++.+
T Consensus 201 d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~----------------~~~~~a~~L~~~A 245 (254)
T PF00481_consen 201 DEFLVLASDGLWDVLSNEEIVDIVRESLNSGR----------------SPQEAAEKLVDEA 245 (254)
T ss_dssp EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHS----------------HHHHHHHHHHHHH
T ss_pred ceEEEEEcccccccCCHHHHHHHHHHHHhcCC----------------cHHHHHHHHHHHH
Confidence 66888888666678999999999999888761 5677788887654
No 98
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=21.20 E-value=92 Score=23.75 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCEL 70 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CEL 70 (80)
++++.+++++++..+ .+|..|..+.=-++.+..+.+.+++-
T Consensus 311 a~~~~~~l~~l~~~l-------glp~~l~~~gi~~~~l~~ia~~a~~~ 351 (366)
T PF00465_consen 311 ADDAIDELRALLRSL-------GLPTRLSDLGIDEEDLDEIAEAALAD 351 (366)
T ss_dssp HHHHHHHHHHHHHHT-------T--SSGGGGT-TGGGHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHh-------CCCCCHHHcCCCHHHHHHHHHHHHhC
Confidence 567889999999998 68888887754445555555555543
No 99
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=21.09 E-value=61 Score=23.47 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.3
Q ss_pred cccccccCCcccC
Q 034871 67 VCELELQGDVGSI 79 (80)
Q Consensus 67 ~CELEi~pG~~~~ 79 (80)
.+-||||+|.|++
T Consensus 31 ~~VLEiG~G~G~l 43 (253)
T TIGR00755 31 DVVLEIGPGLGAL 43 (253)
T ss_pred CEEEEeCCCCCHH
Confidence 4569999999964
No 100
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=21.03 E-value=1e+02 Score=21.02 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHhh
Q 034871 22 TEEELKARLKYWLENW 37 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~ 37 (80)
|..|+-+||+..|.+.
T Consensus 17 sSkeTyeWL~aal~RK 32 (93)
T PF07315_consen 17 SSKETYEWLEAALKRK 32 (93)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhCc
Confidence 7889999999999876
No 101
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=20.94 E-value=1.5e+02 Score=23.00 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
.++.++++++++.++ .+|..|+.+.=.++....+.+.++
T Consensus 322 ~~~~~~~i~~l~~~l-------glP~~L~~~gv~~~~l~~~a~~a~ 360 (382)
T cd08187 322 ALEGIEATEEFFKSL-------GLPTTLSELGIGEEDIDEMAEKAT 360 (382)
T ss_pred HHHHHHHHHHHHHHc-------CCCCcHHHcCCCHHHHHHHHHHHH
Confidence 356788889998888 699888777655566666666554
No 102
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=20.86 E-value=1.4e+02 Score=19.66 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhh
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLA 51 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~ 51 (80)
|++|+++-+|.-.+.- .||+.++
T Consensus 10 ~Eqells~IkkeveaG-------kLP~~va 32 (77)
T PF14829_consen 10 SEQELLSGIKKEVEAG-------KLPANVA 32 (77)
T ss_dssp SHHHHHHHHHHHHHTT-------SS-HHHH
T ss_pred cHHHHHHHHHHHHHcC-------CCChhHH
Confidence 7889999998877765 7998764
No 103
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=20.85 E-value=2.2e+02 Score=21.09 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHhcccc
Q 034871 54 ATIDEAVAFLITNVCEL 70 (80)
Q Consensus 54 ~s~~~qaq~Lldt~CEL 70 (80)
.|.++.++.+-+|++.|
T Consensus 239 ~~~~el~~~~~~N~~~l 255 (258)
T PRK11449 239 EPADEIAEVLLNNTYTL 255 (258)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 35567788888887765
No 104
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=20.81 E-value=1.1e+02 Score=25.00 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHh
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITN 66 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt 66 (80)
|+.|.+.+.+..|+++|. .|.|++.|+.|=+.+
T Consensus 184 tAmeAL~~m~~fL~~rP~------------~F~Si~~Ai~W~v~s 216 (343)
T KOG2564|consen 184 TAMEALNSMQHFLRNRPK------------SFKSIEDAIEWHVRS 216 (343)
T ss_pred HHHHHHHHHHHHHhcCCc------------cccchhhHHHHHhcc
Confidence 678999999999999984 578999999987654
No 105
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=20.71 E-value=74 Score=20.98 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=11.0
Q ss_pred CChHh-hccCCHHHHHHHHHHh
Q 034871 46 LPPDL-AKFATIDEAVAFLITN 66 (80)
Q Consensus 46 LP~dL-~k~~s~~~qaq~Lldt 66 (80)
+-||. .-|.|+++++++|+--
T Consensus 13 ~~PD~~tPF~s~~DA~~RLLPY 34 (109)
T PF15249_consen 13 LNPDYKTPFRSLEDAVERLLPY 34 (109)
T ss_pred hCCCcCCCCCCHHHHHHHhcch
Confidence 33443 4556666666666543
No 106
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=20.65 E-value=1.2e+02 Score=20.36 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=27.8
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHH
Q 034871 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFL 63 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~L 63 (80)
.++++|..++.++-...... -.+||++....+--++|+.|
T Consensus 83 ~~p~~L~~~l~~~n~~~~~~---r~~~p~~~~v~~WI~~Ak~l 122 (122)
T PF14229_consen 83 RNPQNLHQKLGRLNRKLKLR---RQLCPSLEEVQEWIEQAKQL 122 (122)
T ss_pred CCHHHHHHHHHHHHHHhcCC---cCCCCCHHHHHHHHHHHHhC
Confidence 46888999999888777642 24457777776666666643
No 107
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=20.60 E-value=47 Score=20.31 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccC
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFA 54 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~ 54 (80)
+.++.+.||..|+... ..|++-+|+=
T Consensus 18 ~~~Tv~~lK~~i~~~t------gvp~~~QKLi 43 (74)
T cd01813 18 SEDTVLDLKQFIKTLT------GVLPERQKLL 43 (74)
T ss_pred CCCCHHHHHHHHHHHH------CCCHHHEEEE
Confidence 4467778888888885 4899888765
No 108
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=20.17 E-value=1e+02 Score=19.75 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.8
Q ss_pred cccCHHHHHHHHHHHHHhhh
Q 034871 19 KFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 19 qflT~~Ell~~Lk~~L~~~~ 38 (80)
+.+|.++.++-|-.||+.--
T Consensus 2 ~~lt~~~~L~iLi~WLedNi 21 (65)
T PF06117_consen 2 QILTTEEALEILIAWLEDNI 21 (65)
T ss_pred ccchHHHHHHHHHHHHHccc
Confidence 56899999999999998653
Done!