Query 034871
Match_columns 80
No_of_seqs 56 out of 58
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 11:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034871.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034871hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pn5a1 a.77.1.5 (A:59-151) NA 56.8 11 0.00081 22.0 4.8 48 21-69 16-63 (93)
2 d2dlxa1 c.47.1.24 (A:1-147) UB 47.0 12 0.00091 22.7 4.0 32 7-38 103-139 (147)
3 d1w6ta1 c.1.11.1 (A:138-433) E 44.6 4.5 0.00033 28.6 1.8 34 5-38 113-149 (296)
4 d1wy7a1 c.66.1.32 (A:4-204) Hy 42.9 9 0.00065 24.4 2.9 47 29-78 4-59 (201)
5 d2fwha1 c.47.1.1 (A:428-544) T 42.8 15 0.0011 20.5 3.6 26 7-32 84-116 (117)
6 d1qama_ c.66.1.24 (A:) rRNA ad 42.8 2.4 0.00017 28.4 -0.0 13 67-79 23-35 (235)
7 d1yuba_ c.66.1.24 (A:) rRNA ad 41.4 3.6 0.00027 27.7 0.8 12 68-79 32-43 (245)
8 d1qyra_ c.66.1.24 (A:) High le 38.0 5.7 0.00041 26.8 1.3 14 66-79 22-35 (252)
9 d1h3oa_ a.22.1.3 (A:) TAF(II)- 36.9 9 0.00066 21.1 1.9 33 20-56 2-34 (50)
10 d1a6qa2 d.219.1.1 (A:2-296) Pr 34.3 14 0.00099 24.4 2.8 47 6-68 229-275 (295)
11 d1s35a1 a.7.1.1 (A:1063-1168) 33.9 21 0.0015 19.3 3.2 28 23-54 8-35 (106)
12 d1zq9a1 c.66.1.24 (A:36-313) P 33.4 5.6 0.00041 27.4 0.7 12 68-79 24-35 (278)
13 d1i4wa_ c.66.1.24 (A:) Transcr 32.8 6.6 0.00048 27.1 1.0 12 68-79 46-57 (322)
14 d2akza1 c.1.11.1 (A:140-433) E 32.5 16 0.0011 25.6 3.0 34 5-38 113-148 (294)
15 d1ucpa_ a.77.1.5 (A:) Apoptosi 31.2 34 0.0025 19.6 4.0 48 21-69 15-62 (91)
16 d2ptza1 c.1.11.1 (A:139-429) E 30.4 14 0.00098 25.9 2.4 23 16-38 126-148 (291)
17 d2hg7a1 d.186.2.1 (A:1-60) Pha 30.3 16 0.0011 20.8 2.2 18 20-37 40-57 (60)
18 d2fyma1 c.1.11.1 (A:140-431) E 29.7 16 0.0012 25.6 2.6 32 5-38 114-145 (292)
19 d1rtya_ a.25.2.2 (A:) Putative 29.0 21 0.0015 22.6 3.0 44 18-68 61-108 (161)
20 d2fcta1 b.82.2.9 (A:3-310) Syr 28.8 13 0.00096 23.9 1.9 25 3-33 13-37 (308)
21 d2al1a1 c.1.11.1 (A:142-436) E 28.7 17 0.0012 25.5 2.6 22 17-38 128-149 (295)
22 d1klpa_ a.28.1.1 (A:) Acyl car 27.5 27 0.0019 20.0 3.0 18 21-38 3-20 (115)
23 d1cuna2 a.7.1.1 (A:116-219) Sp 26.8 28 0.002 18.8 3.0 29 22-54 5-33 (104)
24 d1rrma_ e.22.1.2 (A:) Lactalde 26.6 19 0.0014 24.6 2.5 38 24-68 320-357 (385)
25 d1x2la1 a.35.1.7 (A:9-95) Home 25.2 52 0.0038 19.3 4.1 24 14-37 2-25 (87)
26 d2a1xa1 b.82.2.9 (A:43-338) Ph 24.4 23 0.0017 22.3 2.5 21 5-30 20-40 (296)
27 d1iwga3 d.58.44.1 (A:567-673) 23.1 56 0.0041 18.2 3.9 33 7-39 60-94 (107)
28 d1kq3a_ e.22.1.2 (A:) Glycerol 23.0 42 0.0031 22.3 3.8 39 23-68 288-329 (364)
29 d1u5pa2 a.7.1.1 (A:1772-1872) 22.8 44 0.0032 17.6 3.3 26 23-52 7-32 (101)
30 d1ueba2 b.40.4.5 (A:64-126) El 22.3 16 0.0011 20.1 1.2 28 2-29 10-37 (63)
31 d1ne2a_ c.66.1.32 (A:) Hypothe 22.3 40 0.0029 21.6 3.4 49 26-77 3-60 (197)
32 d2e9xd1 a.278.1.4 (D:21-165) G 22.2 22 0.0016 22.5 2.0 40 21-63 1-41 (145)
33 d1p90a_ c.55.5.2 (A:) NafY cor 22.1 24 0.0018 20.5 2.1 24 22-53 99-122 (123)
34 d1vkua_ a.28.1.1 (A:) Acyl car 21.6 29 0.0021 18.5 2.3 18 49-66 63-80 (85)
35 d1szqa_ e.44.1.1 (A:) 2-methyl 21.5 32 0.0023 24.3 3.0 41 14-71 416-457 (473)
36 d1ve2a1 c.90.1.1 (A:1-235) Uro 21.1 26 0.0019 21.4 2.2 57 22-80 63-119 (235)
37 d1ppja1 d.185.1.1 (A:2-233) Cy 20.8 37 0.0027 20.5 2.9 20 21-40 202-221 (232)
38 d1lcia_ e.23.1.1 (A:) Lucifera 20.7 38 0.0028 22.5 3.1 26 9-37 481-506 (541)
No 1
>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.82 E-value=11 Score=22.01 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccc
Q 034871 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 69 (80)
|+++|+.. +|..|.+.+-.-|...+|+.--.-.+..+=|..|++.|.+
T Consensus 16 L~~~Elkk-FK~~L~~~~l~~~~~~Ip~~~le~ad~~dLa~lLv~~y~~ 63 (93)
T d1pn5a1 16 LKKEELKE-FQLLLANKAHSRSSSGETPAQPEKTSGMEVASYLVAQYGE 63 (93)
T ss_dssp CCHHHHHH-HHHHHHHHCTTCCSSCSCSSCCCCCSHHHHHHHHHHHTCH
T ss_pred ccHHHHHH-HHHHHcccccccCCCCCCHHHHhhCCHHHHHHHHHHHCCH
Confidence 67777764 5999988764445667888766667999999999988764
No 2
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.99 E-value=12 Score=22.73 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=26.7
Q ss_pred CceEEecCCCCcc-----ccCHHHHHHHHHHHHHhhh
Q 034871 7 ETYVLLEPGVEEK-----FVTEEELKARLKYWLENWA 38 (80)
Q Consensus 7 D~YVvLEp~~~Eq-----flT~~Ell~~Lk~~L~~~~ 38 (80)
-+++++.|...|. ++++++.+..|+..|...+
T Consensus 103 Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl~~~~ 139 (147)
T d2dlxa1 103 PYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHG 139 (147)
T ss_dssp SEEEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHTC
T ss_pred eEEEEEeCCCCeEecccCCCCHHHHHHHHHHHHhhCC
Confidence 4789999865555 7899999999999999774
No 3
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=44.63 E-value=4.5 Score=28.62 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=25.0
Q ss_pred ccCceEEe---cCCCCccccCHHHHHHHHHHHHHhhh
Q 034871 5 RTETYVLL---EPGVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 5 q~D~YVvL---Ep~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
..+.|+.- ..+.+.+++|++|+.+.+++|+.++|
T Consensus 113 ~~~~~~Y~~~~~e~~~~~~~s~~elid~y~~l~~~YP 149 (296)
T d1w6ta1 113 DKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYP 149 (296)
T ss_dssp C--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSC
T ss_pred cCCCceeeeccccCCcccccCHHHHHHHHHHHHhcCC
Confidence 44455442 23556778999999999999999998
No 4
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=42.87 E-value=9 Score=24.38 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=32.5
Q ss_pred HHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc---------cccccCCccc
Q 034871 29 RLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC---------ELELQGDVGS 78 (80)
Q Consensus 29 ~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C---------ELEi~pG~~~ 78 (80)
.|..+|++.++ |..==..|..|.|....|.+++..++ -||++-|-|.
T Consensus 4 ~l~~~l~~~~~---f~~~~~~l~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~ 59 (201)
T d1wy7a1 4 ELAIALSKLKG---FKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGV 59 (201)
T ss_dssp HHHHHHHTSCC---CSSCCGGGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCH
T ss_pred HHHHHHccCCC---CCCCCcccccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchH
Confidence 46667777764 33333478888888888888877665 4677777775
No 5
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}
Probab=42.83 E-value=15 Score=20.45 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=19.0
Q ss_pred CceEEecCCCCc-------cccCHHHHHHHHHH
Q 034871 7 ETYVLLEPGVEE-------KFVTEEELKARLKY 32 (80)
Q Consensus 7 D~YVvLEp~~~E-------qflT~~Ell~~Lk~ 32 (80)
-+++++.++-.+ -++++++++++|++
T Consensus 84 Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 84 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp SEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred eEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 378888775322 26799999999985
No 6
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}
Probab=42.83 E-value=2.4 Score=28.39 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=10.4
Q ss_pred cccccccCCcccC
Q 034871 67 VCELELQGDVGSI 79 (80)
Q Consensus 67 ~CELEi~pG~~~~ 79 (80)
-.-||||||.|++
T Consensus 23 d~VlEIGpG~G~L 35 (235)
T d1qama_ 23 DNIFEIGSGKGHF 35 (235)
T ss_dssp CEEEEECCTTSHH
T ss_pred CeEEEECCCchHH
Confidence 3469999999974
No 7
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}
Probab=41.36 E-value=3.6 Score=27.69 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=10.2
Q ss_pred ccccccCCcccC
Q 034871 68 CELELQGDVGSI 79 (80)
Q Consensus 68 CELEi~pG~~~~ 79 (80)
.-||||||-|.+
T Consensus 32 ~VLEIGpG~G~L 43 (245)
T d1yuba_ 32 TVYEIGTGKGHL 43 (245)
T ss_dssp EEEECSCCCSSC
T ss_pred eEEEECCCccHH
Confidence 459999999975
No 8
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}
Probab=37.99 E-value=5.7 Score=26.83 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=11.1
Q ss_pred hcccccccCCcccC
Q 034871 66 NVCELELQGDVGSI 79 (80)
Q Consensus 66 t~CELEi~pG~~~~ 79 (80)
.-+-||||||.|+.
T Consensus 22 ~d~vlEIGpG~G~L 35 (252)
T d1qyra_ 22 GQAMVEIGPGLAAL 35 (252)
T ss_dssp TCCEEEECCTTTTT
T ss_pred CCEEEEECCCchHH
Confidence 34669999999974
No 9
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.91 E-value=9 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=27.8
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCH
Q 034871 20 FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATI 56 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~ 56 (80)
||.+..|..++.++-.+. |.+++++|...+=|-
T Consensus 2 FL~~~~Lq~ri~~I~~k~----Gl~e~~~dV~~lISH 34 (50)
T d1h3oa_ 2 FLLQAPLQRRILEIGKKH----GITELHPDVVSYVSH 34 (50)
T ss_dssp CSCHHHHHHHHHHHHHTT----TCCEECTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHc----CCCccCHHHHHHHHH
Confidence 899999999999999888 447899998887654
No 10
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.26 E-value=14 Score=24.43 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=34.6
Q ss_pred cCceEEecCCCCccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 6 TETYVLLEPGVEEKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 6 ~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
.|.|+||-.+-==.+|+.+|+.+.++..+..- .+++++|+.|++.+-
T Consensus 229 ~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~~----------------~~~~~~a~~Lv~~A~ 275 (295)
T d1a6qa2 229 DDQFIILACDGIWDVMGNEELCDFVRSRLEVT----------------DDLEKVCNEVVDTCL 275 (295)
T ss_dssp TEEEEEEECHHHHTTSCHHHHHHHHHHHHTTC----------------CCHHHHHHHHHHHHH
T ss_pred cceeEeeecCcccccCCHHHHHHHHHHHhhcC----------------CCHHHHHHHHHHHHH
Confidence 45688888765556799999998887765433 346788999988763
No 11
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.92 E-value=21 Score=19.31 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccC
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFA 54 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~ 54 (80)
..++..||.+....... ..+|.|+....
T Consensus 8 ~~~l~~Wl~~~e~~l~~----~~~~~d~~~~~ 35 (106)
T d1s35a1 8 LDDFQAWLSITQKAVAS----EDMPESLPEAE 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHC----CCCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhC----CCCCCCHHHHH
Confidence 46788888888777654 36677665433
No 12
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.38 E-value=5.6 Score=27.42 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=10.0
Q ss_pred ccccccCCcccC
Q 034871 68 CELELQGDVGSI 79 (80)
Q Consensus 68 CELEi~pG~~~~ 79 (80)
.-||||||.|.+
T Consensus 24 ~VlEIGPG~G~L 35 (278)
T d1zq9a1 24 VVLEVGPGTGNM 35 (278)
T ss_dssp EEEEECCTTSTT
T ss_pred EEEEECCCchHH
Confidence 468999999974
No 13
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.82 E-value=6.6 Score=27.07 Aligned_cols=12 Identities=33% Similarity=0.254 Sum_probs=10.1
Q ss_pred ccccccCCcccC
Q 034871 68 CELELQGDVGSI 79 (80)
Q Consensus 68 CELEi~pG~~~~ 79 (80)
+-||||||.|.+
T Consensus 46 ~VlEIGPG~G~L 57 (322)
T d1i4wa_ 46 KVLDLYPGVGIQ 57 (322)
T ss_dssp EEEEESCTTCHH
T ss_pred eEEEECCCCCHH
Confidence 579999999963
No 14
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=32.45 E-value=16 Score=25.59 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=25.8
Q ss_pred ccCceEEe--cCCCCccccCHHHHHHHHHHHHHhhh
Q 034871 5 RTETYVLL--EPGVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 5 q~D~YVvL--Ep~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
..+.|.+= .+..+-+++|++|+.+.+++|..++|
T Consensus 113 ~~~kY~~~~~~~~~~~~~~t~delid~y~~l~~kYP 148 (294)
T d2akza1 113 RDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYP 148 (294)
T ss_dssp ETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSC
T ss_pred hcCcceeeecccCCccceecHHHHHHHHHHHhcccC
Confidence 44455542 12445789999999999999999998
No 15
>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.23 E-value=34 Score=19.60 Aligned_cols=48 Identities=23% Similarity=0.181 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccc
Q 034871 21 VTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCE 69 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CE 69 (80)
|+++|+ .++|..|.+.+-.-|+..+|+.--.-.+..+=|..|++.|++
T Consensus 15 L~~~El-kkFK~~L~~~~l~~~~~~Ip~~~le~ad~~dladlLv~~y~~ 62 (91)
T d1ucpa_ 15 LTAEEL-KKFKLKLLSVPLREGYGRIPRGALLSMDALDLTDKLVSFYLE 62 (91)
T ss_dssp SCHHHH-HHHHHHTTTSCCCSSSCCCCHHHHHHCCHHHHHHHHHHTSCH
T ss_pred ccHHHH-HHHHHHHCcccccccCCCCCHHHHhhCCHHHHHHHHHHHCCH
Confidence 566665 467888888765456678999887778999999999998875
No 16
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]}
Probab=30.41 E-value=14 Score=25.87 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred CCccccCHHHHHHHHHHHHHhhh
Q 034871 16 VEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 16 ~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
.+-+++|++|+.+.+++|+.++|
T Consensus 126 ~~~~~ls~~elid~y~~l~~~YP 148 (291)
T d2ptza1 126 PEPTWVTAEQLRETYCKWAHDYP 148 (291)
T ss_dssp SSCCEECHHHHHHHHHHHHHHSC
T ss_pred cCcchhhHHHHHHHHHHHhhccc
Confidence 34578999999999999999998
No 17
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=30.30 E-value=16 Score=20.79 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=15.1
Q ss_pred ccCHHHHHHHHHHHHHhh
Q 034871 20 FVTEEELKARLKYWLENW 37 (80)
Q Consensus 20 flT~~Ell~~Lk~~L~~~ 37 (80)
.=|++||.+|-++++.+-
T Consensus 40 ~PTe~EL~~~w~e~q~np 57 (60)
T d2hg7a1 40 LPTQAELETWWEELQKNP 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHhhCC
Confidence 458999999999998764
No 18
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]}
Probab=29.72 E-value=16 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=24.6
Q ss_pred ccCceEEecCCCCccccCHHHHHHHHHHHHHhhh
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
..+.|...-. ..+++|++|+.+.+++|+.++|
T Consensus 114 ~~~~y~~~~~--~~~~~t~~eli~~y~~l~~~yP 145 (292)
T d2fyma1 114 KDGKYVLAGE--GNKAFTSEEFTHFLEELTKQYP 145 (292)
T ss_dssp ETTEEEEGGG--TTEEECHHHHHHHHHHHHHHSC
T ss_pred ccccceeccC--CCccccHHHHHHHHHHHHhcCc
Confidence 4566654322 2467999999999999999998
No 19
>d1rtya_ a.25.2.2 (A:) Putative ATP-binding cobalamin adenosyltransferase YvqK {Bacillus subtilis [TaxId: 1423]}
Probab=29.00 E-value=21 Score=22.62 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=30.7
Q ss_pred ccccCHHHHHHHHHHHHHhhhccCCCCCCChHhhcc----CCHHHHHHHHHHhcc
Q 034871 18 EKFVTEEELKARLKYWLENWAGQVGKGGLPPDLAKF----ATIDEAVAFLITNVC 68 (80)
Q Consensus 18 EqflT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~----~s~~~qaq~Lldt~C 68 (80)
..-++++ -.+||..|+..+.. .||+ +..| +|...++-|+-+|.|
T Consensus 61 ~~~i~~~-~v~~LE~~ID~~~~-----~lp~-l~~FILPGGs~~~A~lh~aRtv~ 108 (161)
T d1rtya_ 61 DYKLTEE-SVSFLETRIDAYTA-----EAPE-LKKFILPGGSKCASLLHIARTIT 108 (161)
T ss_dssp CCCCCHH-HHHHHHHHHHHHHH-----HSCC-CCSCBCSCSSHHHHHHHHHHHHH
T ss_pred ccccCHH-HHHHHHHHHHHHHh-----hhcc-ccceecCCCCHHHHHHHHHHHHH
Confidence 3345654 57888888888764 3432 3333 788999999999988
No 20
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Probab=28.77 E-value=13 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=19.7
Q ss_pred ccccCceEEecCCCCccccCHHHHHHHHHHH
Q 034871 3 YSRTETYVLLEPGVEEKFVTEEELKARLKYW 33 (80)
Q Consensus 3 y~q~D~YVvLEp~~~EqflT~~Ell~~Lk~~ 33 (80)
| .+|.||++ +.++|++|+.+..+..
T Consensus 13 f-~~~Gyl~i-----~~~~s~~ei~~i~~~~ 37 (308)
T d2fcta1 13 F-EKNGFIGP-----FDAYSPEEMKETWKRT 37 (308)
T ss_dssp H-HHHSEEEE-----EESSCHHHHHHHHHHH
T ss_pred H-HhCCEEEC-----cCccCHHHHHHHHHHH
Confidence 5 67899987 6789999988766554
No 21
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.75 E-value=17 Score=25.49 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=20.3
Q ss_pred CccccCHHHHHHHHHHHHHhhh
Q 034871 17 EEKFVTEEELKARLKYWLENWA 38 (80)
Q Consensus 17 ~EqflT~~Ell~~Lk~~L~~~~ 38 (80)
+-+++|++|+.+.+++|+.++|
T Consensus 128 ~~~~~s~~elid~y~~li~~YP 149 (295)
T d2al1a1 128 KSKWLTGPQLADLYHSLMKRYP 149 (295)
T ss_dssp GGGCBCHHHHHHHHHHHHHHSC
T ss_pred CccccchHHHHHHHHHHHHhCC
Confidence 3578999999999999999998
No 22
>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.53 E-value=27 Score=20.00 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHHhhh
Q 034871 21 VTEEELKARLKYWLENWA 38 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~ 38 (80)
+|.+|+.++|+.++++.-
T Consensus 3 ~t~~~i~~~l~~iv~~~l 20 (115)
T d1klpa_ 3 VTQEEIIAGIAEIIEEVT 20 (115)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 677888888888887764
No 23
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.77 E-value=28 Score=18.84 Aligned_cols=29 Identities=21% Similarity=0.073 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhhccC
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKFA 54 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~ 54 (80)
+.+|++.||++....... .++|.|+....
T Consensus 5 ~~~e~~~Wl~e~~~~l~~----~~~g~d~~~v~ 33 (104)
T d1cuna2 5 NVEEEEAWINEKMTLVAS----EDYGDTLAAIQ 33 (104)
T ss_dssp HHHHHHHHHHHHHHHHTC----CCCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCCCHHHHH
Confidence 357899999988777754 36777765443
No 24
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=26.61 E-value=19 Score=24.64 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcc
Q 034871 24 EELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVC 68 (80)
Q Consensus 24 ~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~C 68 (80)
+++.++++.+..++ .||..|+.+.=-++....+.+.++
T Consensus 320 ~~~i~~i~~~~~~l-------glP~~L~d~Gv~~~~l~~ia~~a~ 357 (385)
T d1rrma_ 320 NAAVEAVFALNRDV-------GIPPHLRDVGVRKEDIPALAQAAL 357 (385)
T ss_dssp HHHHHHHHHHHHHT-------TCCSSGGGGTCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCCCHHHcCCCHHHHHHHHHHHH
Confidence 35678888888888 799988877433444555555544
No 25
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.17 E-value=52 Score=19.30 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCCCccccCHHHHHHHHHHHHHhh
Q 034871 14 PGVEEKFVTEEELKARLKYWLENW 37 (80)
Q Consensus 14 p~~~EqflT~~Ell~~Lk~~L~~~ 37 (80)
|+.+++-|...|+-.++++.|.+.
T Consensus 2 ~~~~~e~ldT~~i~~~v~~~L~~~ 25 (87)
T d1x2la1 2 PGAEEEQLDTAEIAFQVKEQLLKH 25 (87)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHc
Confidence 677889999999999999999998
No 26
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.40 E-value=23 Score=22.28 Aligned_cols=21 Identities=5% Similarity=0.363 Sum_probs=15.6
Q ss_pred ccCceEEecCCCCccccCHHHHHHHH
Q 034871 5 RTETYVLLEPGVEEKFVTEEELKARL 30 (80)
Q Consensus 5 q~D~YVvLEp~~~EqflT~~Ell~~L 30 (80)
+.|.|||+ +.|+|++++.+..
T Consensus 20 ~~~Gyvvi-----~~~l~~~~~~~l~ 40 (296)
T d2a1xa1 20 EENGFLVI-----KNLVPDADIQRFR 40 (296)
T ss_dssp HHHSEEEE-----TTCSCHHHHHHHH
T ss_pred HHCCEEEc-----cCcCCHHHHHHHH
Confidence 67899998 5688887765443
No 27
>d1iwga3 d.58.44.1 (A:567-673) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=23.14 E-value=56 Score=18.22 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=26.4
Q ss_pred CceEEecC-C-CCccccCHHHHHHHHHHHHHhhhc
Q 034871 7 ETYVLLEP-G-VEEKFVTEEELKARLKYWLENWAG 39 (80)
Q Consensus 7 D~YVvLEp-~-~~EqflT~~Ell~~Lk~~L~~~~~ 39 (80)
-.||.|.| + ...+-.|..++..+|...|.+.|+
T Consensus 60 ~~~v~Lkpw~eR~~~~~s~~~i~~~l~~~~~~i~~ 94 (107)
T d1iwga3 60 IAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 94 (107)
T ss_dssp EEEEEECCGGGCCSTTSSHHHHHHHHHHHHHHSCS
T ss_pred eeeeecccchhccccccCHHHHHHHHHHHHcCCCC
Confidence 35889987 2 333577999999999999999886
No 28
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=22.99 E-value=42 Score=22.29 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhccC---CHHHHHHHHHHhcc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAKFA---TIDEAVAFLITNVC 68 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~---s~~~qaq~Lldt~C 68 (80)
+++..+++..++.++ .+|..|+.+. .-++....+.+.+.
T Consensus 288 ~~~~~~~i~~l~~~l-------glP~~L~elGi~~~~~~~l~~ia~~a~ 329 (364)
T d1kq3a_ 288 PRKMIEEVYSFCEEV-------GLPTTLAEIGLDGVSDEDLMKVAEKAC 329 (364)
T ss_dssp CHHHHHHHHHHHHHH-------TCCCSGGGGTCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc-------CCCCCHHHhCCCCCCHHHHHHHHHHHH
Confidence 367789999999999 6999888874 22556666666544
No 29
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.82 E-value=44 Score=17.65 Aligned_cols=26 Identities=12% Similarity=-0.034 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHhhc
Q 034871 23 EEELKARLKYWLENWAGQVGKGGLPPDLAK 52 (80)
Q Consensus 23 ~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k 52 (80)
.++++.||.+....... .+.|.|+..
T Consensus 7 ~~el~~Wl~e~~~~l~s----~~~g~d~~~ 32 (101)
T d1u5pa2 7 MDDEESWIKEKKLLVSS----EDYGRDLTG 32 (101)
T ss_dssp HHHHHHHHHHHHHHHTC----CCCCSSHHH
T ss_pred HHHHHHHHHHHHHHhhC----CCCCCCHHH
Confidence 46888899888777754 356666543
No 30
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=22.35 E-value=16 Score=20.06 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=22.4
Q ss_pred CccccCceEEecCCCCccccCHHHHHHH
Q 034871 2 AYSRTETYVLLEPGVEEKFVTEEELKAR 29 (80)
Q Consensus 2 my~q~D~YVvLEp~~~EqflT~~Ell~~ 29 (80)
+|.+.|+||++.+..=||+-=+++++..
T Consensus 10 LY~dgd~~~FMd~etyEQi~v~~~~i~~ 37 (63)
T d1ueba2 10 LYPEGEEMVFMDLETYEQFAVPRSRVVG 37 (63)
T ss_dssp EEEETTEEEEEETTTCCEEEEEGGGBTT
T ss_pred EEeCCCeEEEEeCCCccEEEcCHHHcCh
Confidence 5888999999999999998666655554
No 31
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=22.34 E-value=40 Score=21.60 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhc---------ccccccCCcc
Q 034871 26 LKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNV---------CELELQGDVG 77 (80)
Q Consensus 26 ll~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~---------CELEi~pG~~ 77 (80)
++.+|+-.|++.++ ++.-...|.-+.|..+.|.+++..+ .-||+|-|-|
T Consensus 3 ~k~~l~~~l~~~~~---~~~~~~~leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG 60 (197)
T d1ne2a_ 3 IKNDLEIRLQKLQQ---QGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNG 60 (197)
T ss_dssp HHHHHHHHHHTSCC---CC--------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTC
T ss_pred chHHHHHHHhcCCC---CCCCCcccccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCc
Confidence 34568888888874 5777788999999888887775333 3456666665
No 32
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.20 E-value=22 Score=22.50 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHH-HHHhhhccCCCCCCChHhhccCCHHHHHHHH
Q 034871 21 VTEEELKARLKY-WLENWAGQVGKGGLPPDLAKFATIDEAVAFL 63 (80)
Q Consensus 21 lT~~Ell~~Lk~-~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~L 63 (80)
+|+++++++|+. |+..+- .++-||-.-.-++.+-+|+++.
T Consensus 1 ~t~~~~l~~L~~aW~NEr~---aPELLp~~~~lv~~v~~qi~~~ 41 (145)
T d2e9xd1 1 LTPAELIERLEQAWMNEKF---APELLESKPEIVECVMEQLEHM 41 (145)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CSSCCCCCHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHhcc---ChhccCCcHHHHHHHHHHHHHH
Confidence 578888877754 666553 2456665444444444444443
No 33
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=22.11 E-value=24 Score=20.47 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhhcc
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKF 53 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~ 53 (80)
+-+|.+++|++.|.. ..|+.|+|.
T Consensus 99 ~ie~al~~l~~~l~~--------~~p~~l~k~ 122 (123)
T d1p90a_ 99 AAQEAIAELQTVMAG--------SPPPWLAKL 122 (123)
T ss_dssp EHHHHHHHHHHHHHS--------CCCHHHHHH
T ss_pred cHHHHHHHHHHHhCC--------CCChHHhhc
Confidence 467888888887643 589999873
No 34
>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}
Probab=21.57 E-value=29 Score=18.54 Aligned_cols=18 Identities=11% Similarity=0.481 Sum_probs=11.6
Q ss_pred HhhccCCHHHHHHHHHHh
Q 034871 49 DLAKFATIDEAVAFLITN 66 (80)
Q Consensus 49 dL~k~~s~~~qaq~Lldt 66 (80)
++.+++|+.+-+.|+...
T Consensus 63 ~~~~~~Tv~~l~~~i~~~ 80 (85)
T d1vkua_ 63 EISKIRKVKDLIDIVIKK 80 (85)
T ss_dssp HHTTCCBHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 366677777777766554
No 35
>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia coli [TaxId: 562]}
Probab=21.49 E-value=32 Score=24.28 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=29.2
Q ss_pred CCCCcc-ccCHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhccccc
Q 034871 14 PGVEEK-FVTEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELE 71 (80)
Q Consensus 14 p~~~Eq-flT~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELE 71 (80)
.|.|+. -+|.+|+.+|++...+.. +|. ++++.+++....||
T Consensus 416 ~G~p~~~p~~~~~l~~KF~~~~~~~--------l~~---------~~~~~i~~~~~~le 457 (473)
T d1szqa_ 416 IGHARRRQDGIPKLVDKFKINLARQ--------FPT---------RQQQRILEVSLDRA 457 (473)
T ss_dssp TTSGGGHHHHHHHHHHHHHHHHHHH--------SCH---------HHHHHHHHHHHCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhh--------CCH---------HHHHHHHHHHhCHh
Confidence 388886 778899999999988865 554 45556666555544
No 36
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase (SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Probab=21.11 E-value=26 Score=21.45 Aligned_cols=57 Identities=21% Similarity=0.057 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCChHhhccCCHHHHHHHHHHhcccccccCCcccCC
Q 034871 22 TEEELKARLKYWLENWAGQVGKGGLPPDLAKFATIDEAVAFLITNVCELELQGDVGSIQ 80 (80)
Q Consensus 22 T~~Ell~~Lk~~L~~~~~~~~~~~LP~dL~k~~s~~~qaq~Lldt~CELEi~pG~~~~~ 80 (80)
+.++..+.+...+++-.. |.. --.-|---+++....+++|...-.+.++=||+.|+|
T Consensus 63 ~~~~~~~~i~~~~~~g~~-V~~-l~~Gdp~~~~~~~~~~~~~~~~~i~veviPGiSs~~ 119 (235)
T d1ve2a1 63 PQEAITARLIALAREGRV-VAR-LKGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAV 119 (235)
T ss_dssp CHHHHHHHHHHHHHTTCE-EEE-EESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTH
T ss_pred hHHHHHHHHHHHHHcCCe-EEE-EecccccccchHHHHHHHHhhCCCCEEEeccccHHH
Confidence 345555666655555321 000 012233346777888888888888999999999875
No 37
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.80 E-value=37 Score=20.45 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=16.0
Q ss_pred cCHHHHHHHHHHHHHhhhcc
Q 034871 21 VTEEELKARLKYWLENWAGQ 40 (80)
Q Consensus 21 lT~~Ell~~Lk~~L~~~~~~ 40 (80)
+++++++.+++.++..||..
T Consensus 202 ~~~~~l~~l~~~~fg~l~~~ 221 (232)
T d1ppja1 202 LEHRQLLDLAQKHFSGLSGT 221 (232)
T ss_dssp CCHHHHHHHHHHHHTTSCSC
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 57788888888888888753
No 38
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}
Probab=20.71 E-value=38 Score=22.47 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=20.5
Q ss_pred eEEecCCCCccccCHHHHHHHHHHHHHhh
Q 034871 9 YVLLEPGVEEKFVTEEELKARLKYWLENW 37 (80)
Q Consensus 9 YVvLEp~~~EqflT~~Ell~~Lk~~L~~~ 37 (80)
||+++++.. ++.+++.+++++.|...
T Consensus 481 ~v~~~~~~~---~~~~~l~~~~~~~l~~~ 506 (541)
T d1lcia_ 481 VVVLEHGKT---MTEKEIVDYVASQVTTA 506 (541)
T ss_dssp EEEECTTCC---CCHHHHHHHHHHHSCGG
T ss_pred EEEECCCCC---CCHHHHHHHHHHhCCcc
Confidence 678877653 78899999999888654
Done!