BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034873
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93YW0|EXEC1_ARATH Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1
PE=1 SV=1
Length = 684
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 66/80 (82%)
Query: 1 MEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADF 60
+EF+EYVEAVKLTGD VPAG+V FRAKIG+ LP++G P+E GV+A Y GQGR+AD
Sbjct: 577 IEFYEYVEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADP 636
Query: 61 GFRNPKWVDGELLQLNGKVV 80
GFRNP+WVDGEL+ L+GK V
Sbjct: 637 GFRNPRWVDGELVILDGKYV 656
>sp|Q6GIC4|LEPH_STAAR Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MRSA252) GN=spsA PE=3 SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV 80
+ D+ V ASY+ +I DF RN K +DG+++ N VV
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKKLDGDIIPPNNFVV 132
>sp|Q5HHC0|LEPH_STAAC Inactive signal peptidase IA OS=Staphylococcus aureus (strain COL)
GN=spsA PE=3 SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV 80
+ D+ V ASY+ +I DF RN K +DG+++ N VV
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVV 132
>sp|P0A065|LEPH_STAAW Inactive signal peptidase IA OS=Staphylococcus aureus (strain MW2)
GN=spsA PE=3 SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV 80
+ D+ V ASY+ +I DF RN K +DG+++ N VV
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVV 132
>sp|P0A066|LEPH_STAAU Inactive signal peptidase IA OS=Staphylococcus aureus GN=spsA PE=3
SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV 80
+ D+ V ASY+ +I DF RN K +DG+++ N VV
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVV 132
>sp|Q6GAW2|LEPH_STAAS Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MSSA476) GN=spsA PE=3 SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV 80
+ D+ V ASY+ +I DF RN K +DG+++ N VV
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVV 132
>sp|P0A064|LEPH_STAAN Inactive signal peptidase IA OS=Staphylococcus aureus (strain N315)
GN=spsA PE=3 SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV 80
+ D+ V ASY+ +I DF RN K +DG+++ N VV
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVV 132
>sp|P0A063|LEPH_STAAM Inactive signal peptidase IA OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=spsA PE=3 SV=1
Length = 174
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 41 FPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKVV 80
+ D+ V ASY+ +I DF RN K +DG+++ N VV
Sbjct: 93 YRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVV 132
>sp|A2BD94|FB31B_XENLA F-box only protein 31-B OS=Xenopus laevis GN=fbxo31-b PE=2 SV=1
Length = 523
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+A K+TGD NVPAG+ T + + +LP+
Sbjct: 322 KATKITGDPNVPAGQQTLEVDLTRPVQLPD 351
>sp|Q0D2D2|FBX31_XENTR F-box only protein 31 OS=Xenopus tropicalis GN=fbxo31 PE=2 SV=1
Length = 551
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+ K+TGD NVPAG+ T + + +LP+
Sbjct: 350 KVTKITGDPNVPAGQQTLEVDLTRPVQLPD 379
>sp|A2RRT3|FB31A_XENLA F-box only protein 31-A OS=Xenopus laevis GN=fbxo31-a PE=2 SV=1
Length = 519
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPN 37
+ K+TGD NVPAG+ T + + +LP+
Sbjct: 317 KVTKITGDPNVPAGQQTVEVDLTRPVQLPD 346
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.142 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,274,266
Number of Sequences: 539616
Number of extensions: 1380398
Number of successful extensions: 2181
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2170
Number of HSP's gapped (non-prelim): 11
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)