Query 034873
Match_columns 80
No_of_seqs 97 out of 99
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co3_A SAFA pilus subunit; adh 37.8 25 0.00085 24.1 2.8 22 8-29 110-132 (137)
2 2op6_A Heat shock 70 kDa prote 25.1 92 0.0031 19.9 3.9 18 5-22 63-80 (152)
3 1q5l_A Chaperone protein DNAK; 25.0 84 0.0029 20.1 3.6 18 5-22 80-97 (135)
4 2axw_A DRAD invasin; homodimer 22.2 1.9E+02 0.0063 19.5 5.0 19 10-28 95-113 (134)
5 3tip_A Surface protein G; sing 19.1 33 0.0011 22.3 0.7 20 11-32 10-29 (132)
6 3v9f_A Two-component system se 17.0 69 0.0024 24.8 2.2 14 16-29 743-756 (781)
7 3ott_A Two-component system se 17.0 70 0.0024 24.7 2.2 14 16-29 715-728 (758)
8 2qzg_A Conserved uncharacteriz 16.6 33 0.0011 22.0 0.3 8 12-19 68-75 (94)
9 2qsb_A UPF0147 protein TA0600; 15.9 34 0.0012 21.8 0.1 9 12-20 64-72 (89)
10 3r07_C Putative lipoate-protei 15.3 57 0.002 19.8 1.1 12 6-17 29-40 (91)
No 1
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold complementation; 1.78A {Salmonella typhimurium} SCOP: b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A 2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Probab=37.76 E-value=25 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.2
Q ss_pred EEEEeeC-CCCccCceEEEEEEc
Q 034873 8 EAVKLTG-DLNVPAGEVTFRAKI 29 (80)
Q Consensus 8 eAvKLTG-DpNVPrGevtf~A~i 29 (80)
-.|+|+| +.|||+--+....++
T Consensus 110 l~i~l~G~~QnV~pDTYPvT~dv 132 (137)
T 2co3_A 110 LDIVLTGPAQNVTADTYPITLDV 132 (137)
T ss_dssp EEEEECSSCCEECSEEEEEEEEE
T ss_pred EEEEEecccccCCCCceeEEEEE
Confidence 3689999 999999999888874
No 2
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=25.09 E-value=92 Score=19.86 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.9
Q ss_pred eEEEEEEeeCCCCccCce
Q 034873 5 EYVEAVKLTGDLNVPAGE 22 (80)
Q Consensus 5 e~leAvKLTGDpNVPrGe 22 (80)
..|-...|+|-|.-|+|+
T Consensus 63 ~~lg~~~l~gipp~p~G~ 80 (152)
T 2op6_A 63 HKLGNFDVTGIPPAPRGV 80 (152)
T ss_dssp EEEEEEEECCCCCCCTTC
T ss_pred CEeEEEEEECCCCCCCCC
Confidence 457778899999889996
No 3
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=25.02 E-value=84 Score=20.06 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.0
Q ss_pred eEEEEEEeeCCCCccCce
Q 034873 5 EYVEAVKLTGDLNVPAGE 22 (80)
Q Consensus 5 e~leAvKLTGDpNVPrGe 22 (80)
..|-...|+|-|.-|+|+
T Consensus 80 ~~Lg~f~l~gipp~p~G~ 97 (135)
T 1q5l_A 80 KSLGQFNLDGINPAPRGM 97 (135)
T ss_dssp EEEEEEECCCCCSCCSSS
T ss_pred cEEEEEEEeCCCCCCCce
Confidence 467778899999889997
No 4
>2axw_A DRAD invasin; homodimer, beta-sandwich, immunoglobulin-like fold, swapped terminal strands, cell invasion; HET: GOL; 1.05A {Escherichia coli} SCOP: b.2.3.2
Probab=22.18 E-value=1.9e+02 Score=19.53 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=13.1
Q ss_pred EEeeCCCCccCceEEEEEE
Q 034873 10 VKLTGDLNVPAGEVTFRAK 28 (80)
Q Consensus 10 vKLTGDpNVPrGevtf~A~ 28 (80)
|-.-||.-||+++++|...
T Consensus 95 Vv~DGnQ~V~~D~Y~lsv~ 113 (134)
T 2axw_A 95 VMADGNQDIAPGEYRFSVG 113 (134)
T ss_dssp EEESSSBCCCSEEEEEEEE
T ss_pred EEEeCCEecCCCeEEEEEE
Confidence 4456777777777777665
No 5
>3tip_A Surface protein G; single-layer beta sheet, biofilm formation, structu protein; 1.70A {Staphylococcus aureus subsp}
Probab=19.14 E-value=33 Score=22.33 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=14.4
Q ss_pred EeeCCCCccCceEEEEEEcCCC
Q 034873 11 KLTGDLNVPAGEVTFRAKIGKG 32 (80)
Q Consensus 11 KLTGDpNVPrGevtf~A~ig~~ 32 (80)
|.-=|||.|+|+.--. -|.+
T Consensus 10 ~~~~dp~l~~g~~~v~--~G~~ 29 (132)
T 3tip_A 10 RDEFDPKLPTGEKEEV--PGKP 29 (132)
T ss_dssp EEEECTTSCTTCEEEE--CCBC
T ss_pred EEeeCCCCCCCCEEEe--cCCC
Confidence 4445999999998766 4444
No 6
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=17.02 E-value=69 Score=24.80 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=12.4
Q ss_pred CCccCceEEEEEEc
Q 034873 16 LNVPAGEVTFRAKI 29 (80)
Q Consensus 16 pNVPrGevtf~A~i 29 (80)
.|.|.|.++|+++.
T Consensus 743 tnL~pG~Y~f~V~a 756 (781)
T 3v9f_A 743 RNIPPGKYEFLVKA 756 (781)
T ss_dssp CSCCSEEEEEEEEE
T ss_pred cCCCCceEEEEEEE
Confidence 48999999999984
No 7
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=16.95 E-value=70 Score=24.68 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=12.4
Q ss_pred CCccCceEEEEEEc
Q 034873 16 LNVPAGEVTFRAKI 29 (80)
Q Consensus 16 pNVPrGevtf~A~i 29 (80)
.|.|.|.++|+++.
T Consensus 715 tnL~pG~Y~f~V~a 728 (758)
T 3ott_A 715 SNLSYGNYQLIISK 728 (758)
T ss_dssp CSCCSEEEEEEEEE
T ss_pred cCCCCccEEEEEEE
Confidence 48999999999994
No 8
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=16.61 E-value=33 Score=22.01 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=6.4
Q ss_pred eeCCCCcc
Q 034873 12 LTGDLNVP 19 (80)
Q Consensus 12 LTGDpNVP 19 (80)
++-|||+|
T Consensus 68 ISnDPNmP 75 (94)
T 2qzg_A 68 ISEDPNMP 75 (94)
T ss_dssp HTTCTTCC
T ss_pred hhcCCCCC
Confidence 46799998
No 9
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=15.86 E-value=34 Score=21.78 Aligned_cols=9 Identities=56% Similarity=0.866 Sum_probs=6.8
Q ss_pred eeCCCCccC
Q 034873 12 LTGDLNVPA 20 (80)
Q Consensus 12 LTGDpNVPr 20 (80)
++-|||+|-
T Consensus 64 ISnDPNmP~ 72 (89)
T 2qsb_A 64 MANDPNVPA 72 (89)
T ss_dssp HHTCTTSCH
T ss_pred hhcCCCCCh
Confidence 456999993
No 10
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=15.34 E-value=57 Score=19.79 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=9.8
Q ss_pred EEEEEEeeCCCC
Q 034873 6 YVEAVKLTGDLN 17 (80)
Q Consensus 6 ~leAvKLTGDpN 17 (80)
.++.+|++||=-
T Consensus 29 ~I~~vki~GDFf 40 (91)
T 3r07_C 29 RIKDIHISGDFF 40 (91)
T ss_dssp EEEEEEEEEEBC
T ss_pred EEEEEEEEcccC
Confidence 477899999966
Done!