Query 034873
Match_columns 80
No_of_seqs 97 out of 99
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 11:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034873.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034873hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkga3 b.30.5.10 (A:1-250) Rh 62.7 5.5 0.0004 28.0 4.7 69 8-79 93-169 (250)
2 d1dkza2 b.130.1.1 (A:389-506) 55.9 6.6 0.00048 23.7 3.7 21 3-23 62-82 (118)
3 d2cnza1 b.2.3.2 (A:22-144) Saf 55.1 4.2 0.00031 25.8 2.7 22 8-29 96-118 (123)
4 d2g6ba1 c.37.1.8 (A:58-227) Ra 33.7 12 0.00084 22.0 2.2 25 2-28 1-25 (170)
5 d1to4a_ b.1.8.1 (A:) Cu,Zn sup 28.5 17 0.0012 22.8 2.4 21 7-28 4-25 (156)
6 d1vlpa1 d.41.2.2 (A:1-149) Nic 25.1 1.1 8E-05 28.7 -4.1 24 2-28 83-106 (149)
7 d1jmxa3 b.1.18.14 (A:282-363) 21.4 33 0.0024 19.3 2.6 19 10-28 53-71 (82)
8 d1wioa2 b.1.1.1 (A:179-291) CD 20.0 20 0.0015 22.2 1.4 18 14-31 25-43 (113)
9 d1nkga1 b.3.1.2 (A:251-337) Rh 19.4 34 0.0025 18.7 2.3 13 16-28 47-59 (87)
10 d1yuwa1 b.130.1.1 (A:385-543) 19.1 57 0.0042 20.1 3.6 20 5-24 70-89 (159)
No 1
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]}
Probab=62.75 E-value=5.5 Score=27.98 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=42.9
Q ss_pred EEEEeeCCCCccCceEEEEEEcCCCcCCCCCCCCCCCCC-C------c-eEEEeeeEEcCCCCCCCceeeeEEEEEcCCC
Q 034873 8 EAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELG-V------V-ASYSGQGRIADFGFRNPKWVDGELLQLNGKV 79 (80)
Q Consensus 8 eAvKLTGDpNVPrGevtf~A~ig~~~~~~~~g~~~~e~~-~------~-ar~~g~G~VA~~Gf~~~~~i~~~Lilis~~~ 79 (80)
.|+-.|.+|.| ||+-|+|+|... .+|+.--..+.-. . + -.+.=-||-...=|.+.|+||-+...+++..
T Consensus 93 maT~~~aepsv--GelRfIaRL~~~-~lPn~~p~~dvs~t~~~taIEgsDVF~vdG~TrSKfYSs~R~IDd~~~~vsg~~ 169 (250)
T d1nkga3 93 MATYITAEPSI--GELRFIARLNSD-LLPNEEPFGDVSTTADGTAIEGSDVFLVGSETRSKFYSSERFIDDQRHCIAGDA 169 (250)
T ss_dssp EEEEESSCCTT--SCEEEEEEECTT-TCCEEETTGGGGCCTTCEEEETTTEEEETTEEEEGGGGCCBGGGCSEEEEECSS
T ss_pred EEeccCCCCCc--cceeEEEecccc-cCCCCCCCccccccCCCcEEecccEEeECCEEehhhccccceecccEEEEecCC
Confidence 57778899998 999999998652 1221000000000 0 0 1122257777777888899999988887754
No 2
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=55.91 E-value=6.6 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=17.9
Q ss_pred eeeEEEEEEeeCCCCccCceE
Q 034873 3 FFEYVEAVKLTGDLNVPAGEV 23 (80)
Q Consensus 3 ~~e~leAvKLTGDpNVPrGev 23 (80)
..++|-...|+|.|+-|+|+.
T Consensus 62 ~n~~lg~~~i~~ip~~p~G~~ 82 (118)
T d1dkza2 62 DNKSLGQFNLDGINPAPRGMP 82 (118)
T ss_dssp GSEEEEEEEEECCCSCCTTCS
T ss_pred CceEEEEEEEcCCccCCCCCc
Confidence 346788999999999999973
No 3
>d2cnza1 b.2.3.2 (A:22-144) SafA pilus subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=55.14 E-value=4.2 Score=25.85 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.1
Q ss_pred EEEEeeCC-CCccCceEEEEEEc
Q 034873 8 EAVKLTGD-LNVPAGEVTFRAKI 29 (80)
Q Consensus 8 eAvKLTGD-pNVPrGevtf~A~i 29 (80)
.+|||+|| .|||+-.+-...++
T Consensus 96 l~i~l~G~~QnV~aDtYPvTl~v 118 (123)
T d2cnza1 96 LDIVLTGPAQNVTADTYPITLDV 118 (123)
T ss_dssp EEEEECSSCCEECSEEEEEEEEE
T ss_pred EEEEEeccccccCCCccceEEEE
Confidence 47999997 99999887776663
No 4
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.69 E-value=12 Score=22.04 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.9
Q ss_pred ceeeEEEEEEeeCCCCccCceEEEEEE
Q 034873 2 EFFEYVEAVKLTGDLNVPAGEVTFRAK 28 (80)
Q Consensus 2 ~~~e~leAvKLTGDpNVPrGevtf~A~ 28 (80)
+||+++=-|-|-||+|| |.=||.-.
T Consensus 1 ~~~d~~fKi~vvG~~~v--GKTsli~~ 25 (170)
T d2g6ba1 1 DFYDVAFKVMLVGDSGV--GKTCLLVR 25 (170)
T ss_dssp CCCSEEEEEEEECSTTS--SHHHHHHH
T ss_pred CCCceEEEEEEECCCCc--CHHHHHHH
Confidence 68999999999999997 66666544
No 5
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=28.52 E-value=17 Score=22.76 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=15.3
Q ss_pred EEEE-EeeCCCCccCceEEEEEE
Q 034873 7 VEAV-KLTGDLNVPAGEVTFRAK 28 (80)
Q Consensus 7 leAv-KLTGDpNVPrGevtf~A~ 28 (80)
+.|| .|+|+.+| +|.|+|+-.
T Consensus 4 ~~Ava~~~g~~~v-~G~v~F~Q~ 25 (156)
T d1to4a_ 4 MKAVCVMTGTAGV-KGVVKFTQE 25 (156)
T ss_dssp CEEEEEEBCSSSC-EEEEEEEES
T ss_pred eEEEEEEcCCCCc-EEEEEEEEE
Confidence 4566 67888888 588888754
No 6
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.06 E-value=1.1 Score=28.73 Aligned_cols=24 Identities=13% Similarity=0.523 Sum_probs=20.3
Q ss_pred ceeeEEEEEEeeCCCCccCceEEEEEE
Q 034873 2 EFFEYVEAVKLTGDLNVPAGEVTFRAK 28 (80)
Q Consensus 2 ~~~e~leAvKLTGDpNVPrGevtf~A~ 28 (80)
+|.++|+..|.+|| |.|+++|.+.
T Consensus 83 ~fl~~L~~~rF~~d---p~~~v~~~~~ 106 (149)
T d1vlpa1 83 AYIKYISSSNYKLH---PEEQISFTSE 106 (149)
T ss_dssp HHHHHHHSTTCCCC---HHHHEEEEEE
T ss_pred HHHHHHHhCCcCCC---cccceEEecc
Confidence 47788888889999 8999999886
No 7
>d1jmxa3 b.1.18.14 (A:282-363) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Pseudomonas putida [TaxId: 303]}
Probab=21.45 E-value=33 Score=19.33 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=13.0
Q ss_pred EEeeCCCCccCceEEEEEE
Q 034873 10 VKLTGDLNVPAGEVTFRAK 28 (80)
Q Consensus 10 vKLTGDpNVPrGevtf~A~ 28 (80)
+|+|=++++|.|+..+++.
T Consensus 53 ~~v~i~~d~p~G~h~vrv~ 71 (82)
T d1jmxa3 53 LKARAAADAKPGQREVAVG 71 (82)
T ss_dssp EEEEECTTCCSEEEEEEET
T ss_pred EEEEECCCCCCCcEEEEEE
Confidence 4566677777777777664
No 8
>d1wioa2 b.1.1.1 (A:179-291) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.99 E-value=20 Score=22.17 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.3
Q ss_pred CCCCc-cCceEEEEEEcCC
Q 034873 14 GDLNV-PAGEVTFRAKIGK 31 (80)
Q Consensus 14 GDpNV-PrGevtf~A~ig~ 31 (80)
+|.|. |.||..|.|.=++
T Consensus 25 ~~e~L~~~GEL~Wqaega~ 43 (113)
T d1wioa2 25 TVEKLTGSGELWWQAERAS 43 (113)
T ss_dssp CCCSSCEEEEEEEEESSCC
T ss_pred ChhhcCCCceEEEEccCCC
Confidence 57775 9999999988443
No 9
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]}
Probab=19.44 E-value=34 Score=18.71 Aligned_cols=13 Identities=15% Similarity=0.051 Sum_probs=11.5
Q ss_pred CCccCceEEEEEE
Q 034873 16 LNVPAGEVTFRAK 28 (80)
Q Consensus 16 pNVPrGevtf~A~ 28 (80)
+|+|.|.++.++.
T Consensus 47 ~~l~~G~Y~l~v~ 59 (87)
T d1nkga1 47 PAMKPGTYTMVYY 59 (87)
T ss_dssp CCBCSEEEEEEEE
T ss_pred cccCCCCEEEEEE
Confidence 5899999999888
No 10
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.07 E-value=57 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.8
Q ss_pred eEEEEEEeeCCCCccCceEE
Q 034873 5 EYVEAVKLTGDLNVPAGEVT 24 (80)
Q Consensus 5 e~leAvKLTGDpNVPrGevt 24 (80)
..|--.+|+|-|.-|+|++.
T Consensus 70 ~~lg~f~l~~ip~~~~G~~~ 89 (159)
T d1yuwa1 70 NLLGKFELTGIPPAPRGVPQ 89 (159)
T ss_dssp EEEEEEEEECCCCCSTTCCC
T ss_pred cEEEEEEECCCCcCCCCCce
Confidence 56778899999999999653
Done!