BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034875
MSLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFIAPSSYPVITFGPFTSPT
AVLVSLSHAVGNLLDQAFSS

High Scoring Gene Products

Symbol, full name Information P value
HGL1
AT3G23640 		protein from Arabidopsis thaliana 6.1e-26

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034875
        (80 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2088035 - symbol:HGL1 "heteroglycan glucosidas...   305  6.1e-26   1


>TAIR|locus:2088035 [details] [associations]
            symbol:HGL1 "heteroglycan glucosidase 1" species:3702
            "Arabidopsis thaliana" [GO:0004553 "hydrolase activity, hydrolyzing
            O-glycosyl compounds" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0005975 "carbohydrate metabolic process"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
            InterPro:IPR000322 InterPro:IPR011013 InterPro:IPR013785
            Pfam:PF01055 PROSITE:PS00129 GO:GO:0009507 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:3.20.20.70 InterPro:IPR017853
            SUPFAM:SSF51445 GO:GO:0005975 GO:GO:0004553 GO:GO:0030246 CAZy:GH31
            eggNOG:COG1501 InterPro:IPR025887 PANTHER:PTHR22762 Pfam:PF13802
            SUPFAM:SSF74650 EMBL:AY059821 EMBL:BT002505 EMBL:BT008811
            IPI:IPI00521540 RefSeq:NP_001118685.1 RefSeq:NP_566736.1
            UniGene:At.8054 ProteinModelPortal:Q93Y12 SMR:Q93Y12 PaxDb:Q93Y12
            PRIDE:Q93Y12 EnsemblPlants:AT3G23640.1 EnsemblPlants:AT3G23640.2
            GeneID:821944 KEGG:ath:AT3G23640 TAIR:At3g23640
            HOGENOM:HOG000029407 InParanoid:Q93Y12 OMA:MYQAIPF PhylomeDB:Q93Y12
            ProtClustDB:PLN02763 Genevestigator:Q93Y12 Uniprot:Q93Y12
        Length = 991

 Score = 305 (112.4 bits), Expect = 6.1e-26, P = 6.1e-26
 Identities = 56/72 (77%), Positives = 64/72 (88%)

Query:     2 SLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFIAPSSYPVITFGPFTSPTA 61
             SLYQSHPWVL VLP GE LGVLADTTR+CEIDLRKE  I+ I+P+SYP+ITFGPF+SPTA
Sbjct:   121 SLYQSHPWVLVVLPTGETLGVLADTTRKCEIDLRKEGIIRIISPASYPIITFGPFSSPTA 180

Query:    62 VLVSLSHAVGNL 73
             VL SLSHA+G +
Sbjct:   181 VLESLSHAIGTV 192


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        80   0.00091  102 3  11 22  0.39    29
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  95 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.46u 0.15s 8.61t   Elapsed:  00:00:00
  Total cpu time:  8.46u 0.15s 8.61t   Elapsed:  00:00:00
  Start:  Mon May 20 17:55:46 2013   End:  Mon May 20 17:55:46 2013

Back to top