BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034875
         (80 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
          T-Cell Associated Molecule
 pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
          T-Cell Associated Molecule
 pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
          T-Cell Associated Molecule
 pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
          T-Cell Associated Molecule
          Length = 124

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 27 TRRCEIDLRKESTIQFIAPSSYPV 50
          T +C   LRK S++Q++ PS + +
Sbjct: 20 TLKCVTSLRKNSSLQWLTPSGFTI 43


>pdb|3F99|A Chain A, W354f Yersinia Enterocolitica Ptpase Apo Form
 pdb|3F9A|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
           Tungstate
 pdb|3F9B|A Chain A, W354f Yersinia Enterocolitica Ptpase Complexed With
           Divanadate
          Length = 306

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 47  SYPVITFGPFTSPTAVLVSLSHAVGNLLDQ 76
           S PV+  G F   TAV   ++ A+ +L+DQ
Sbjct: 183 SVPVVHVGNFPDQTAVSSEVTKALASLVDQ 212


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,269,661
Number of Sequences: 62578
Number of extensions: 72163
Number of successful extensions: 142
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 2
length of query: 80
length of database: 14,973,337
effective HSP length: 49
effective length of query: 31
effective length of database: 11,907,015
effective search space: 369117465
effective search space used: 369117465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)