BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034875
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9F234|AGL2_BACTQ Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1
          Length = 787

 Score = 33.1 bits (74), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 3   LYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFIAPSSYPVITFGPFTSPT 60
           LYQSHP+ + V  NG A G+  D T +   D  + +T ++   +    I +  F  PT
Sbjct: 184 LYQSHPYFMTV-RNGSAHGIFFDNTYKTTFDF-QTATDEYCFSAEGGAIDYYVFAGPT 239


>sp|P19319|NARZ_ECOLI Respiratory nitrate reductase 2 alpha chain OS=Escherichia coli
            (strain K12) GN=narZ PE=1 SV=5
          Length = 1246

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 8/47 (17%)

Query: 3    LYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFIAPSSYP 49
            LYQ HPW+ A    GE+L        R  ID R  S ++ I P+ +P
Sbjct: 1044 LYQDHPWMRAF---GESL-----VAYRPPIDTRSVSEMRQIPPNGFP 1082


>sp|Q6ZM86|GRD2I_DANRE Delphilin OS=Danio rerio GN=grid2ip PE=3 SV=1
          Length = 1009

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 25/63 (39%)

Query: 6   SHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFIAPSSYPVITFGPFTSPTAVLVS 65
           + P +  VLP  E L       RR       +  +Q   P ++P++   P TSP     S
Sbjct: 497 NRPSLHKVLPTREELRAQHSHPRRSSPQPSSQPILQLHQPKAHPILQSSPHTSPQPPHTS 556

Query: 66  LSH 68
             H
Sbjct: 557 AQH 559


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,973,470
Number of Sequences: 539616
Number of extensions: 921673
Number of successful extensions: 1943
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 4
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)