Query 034875
Match_columns 80
No_of_seqs 105 out of 148
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02763 hydrolase, hydrolyzin 99.9 4.9E-25 1.1E-29 187.1 9.2 79 2-80 109-187 (978)
2 KOG1065 Maltase glucoamylase a 99.9 7.1E-23 1.5E-27 171.3 7.3 79 1-80 218-297 (805)
3 PRK10658 putative alpha-glucos 99.8 2.7E-19 5.9E-24 146.8 7.7 74 2-80 191-267 (665)
4 PRK10426 alpha-glucosidase; Pr 99.7 3.5E-18 7.7E-23 139.5 7.9 72 2-80 134-208 (635)
5 COG1501 Alpha-glucosidases, fa 99.7 5.9E-17 1.3E-21 135.3 8.3 75 1-80 188-265 (772)
6 KOG1066 Glucosidase II catalyt 99.5 6.8E-14 1.5E-18 117.6 6.6 78 1-80 259-358 (915)
7 PF13802 Gal_mutarotas_2: Gala 99.2 4.4E-11 9.5E-16 72.6 4.6 31 2-33 38-68 (68)
8 PF01055 Glyco_hydro_31: Glyco 98.3 2.7E-07 5.8E-12 71.1 1.8 26 53-80 4-29 (441)
9 PF00917 MATH: MATH domain; I 36.4 43 0.00094 20.2 2.6 20 5-24 22-43 (119)
10 PF04038 DUF381: Domain of unk 35.4 11 0.00024 23.0 -0.2 9 65-73 21-29 (62)
11 smart00442 FGF Acidic and basi 35.3 79 0.0017 21.1 3.9 44 2-45 6-51 (126)
12 cd00265 MADS_MEF2_like MEF2 (m 33.7 62 0.0013 19.9 3.0 29 41-72 46-74 (77)
13 COG0219 CspR Predicted rRNA me 29.7 42 0.0009 24.1 1.9 26 50-77 98-127 (155)
14 PF01973 MAF_flag10: Protein o 24.5 97 0.0021 20.8 2.9 25 48-72 25-49 (170)
15 PF04255 DUF433: Protein of un 22.2 61 0.0013 18.6 1.4 16 55-70 30-45 (56)
16 PF14526 Cass2: Integron-assoc 21.5 2.3E+02 0.005 18.0 5.0 55 15-70 46-113 (150)
17 COG0254 RpmE Ribosomal protein 21.4 23 0.0005 22.5 -0.6 8 5-12 42-49 (75)
18 COG0809 QueA S-adenosylmethion 21.4 56 0.0012 26.3 1.4 17 59-79 139-155 (348)
19 PF08850 DUF1820: Domain of un 21.0 1.1E+02 0.0023 20.6 2.5 29 2-36 21-50 (100)
20 PRK00147 queA S-adenosylmethio 20.8 61 0.0013 25.8 1.5 17 63-79 137-153 (342)
21 TIGR00113 queA S-adenosylmethi 20.7 61 0.0013 25.8 1.5 17 63-79 138-154 (344)
22 TIGR01615 A_thal_3542 uncharac 20.6 65 0.0014 22.4 1.4 71 5-77 31-112 (131)
23 KOG3885 Fibroblast growth fact 20.2 68 0.0015 22.8 1.5 17 2-18 111-133 (155)
No 1
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=99.92 E-value=4.9e-25 Score=187.13 Aligned_cols=79 Identities=75% Similarity=1.187 Sum_probs=74.4
Q ss_pred CccceeeEEEEEccCCeeeEEEeecCceeEEEccCCceEEEEecCCccEEEeCCCCCHHHHHHHhhhccCCCCCCCCCC
Q 034875 2 SLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFIAPSSYPVITFGPFTSPTAVLVSLSHAVGNLLDQAFSS 80 (80)
Q Consensus 2 ~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d~~~~~~~~f~a~~~~~~f~~G~gP~p~~Vv~~Yt~ltG~~~mPp~~~ 80 (80)
+|||+|||||+++++|++||||+||+++|+||++.+..++|.++++|+++++|+||+|++|+++||+||||++|||+|+
T Consensus 109 ~LY~siPf~l~~~~~g~~yGVf~dns~~~~fDlg~~~~~~f~a~~~y~~i~~G~gptp~eVi~~Yt~LTGrp~mpP~WA 187 (978)
T PLN02763 109 SLYQSHPWVFVVLPNGEALGVLADTTRRCEIDLRKESIIRIIAPASYPVITFGPFPSPEALLTSLSHAIGTVFMPPKWA 187 (978)
T ss_pred cccccEeEEEEEecCCcEEEEEEeCCCcEEEEEcCCceEEEEecCceEEEEecCCCCHHHHHHHHHHHhCCCCCCchHH
Confidence 7999999999998788999999999999999999998899999999997756888999999999999999999999995
No 2
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=99.88 E-value=7.1e-23 Score=171.30 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=72.6
Q ss_pred CCccceeeEEEEEccCCeeeEEEeecCceeEEEccCCceEEEEec-CCccEEEeCCCCCHHHHHHHhhhccCCCCCCCCC
Q 034875 1 MSLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKESTIQFIAP-SSYPVITFGPFTSPTAVLVSLSHAVGNLLDQAFS 79 (80)
Q Consensus 1 ~~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d~~~~~~~~f~a~-~~~~~f~~G~gP~p~~Vv~~Yt~ltG~~~mPp~~ 79 (80)
.|||+||||||+++.++.++|||+.|||+|||.+++.+.++||.+ |.+++++| +||+|+.|++||.++||||.|||+|
T Consensus 218 ~NLYGshPfymcle~~~~~~GVflLnSNamEv~~~p~p~L~YR~iGGilD~y~f-lGptPe~vvqQy~q~iG~P~m~pYW 296 (805)
T KOG1065|consen 218 VNLYGSHPFYLCLEDDSGAHGVFLLNSNAMEVTLRPGPSLTYRTIGGILDFYVF-LGPTPEGVVQQYLQLIGRPAMPPYW 296 (805)
T ss_pred ccccccccceeEeeccCCCceEEEeccCCceEEeccCCeeEEEeecceEEEEEe-cCCChHHHHHHHHHHhCCccCCchh
Confidence 489999999999999999999999999999999999888999999 54555555 6699999999999999999999999
Q ss_pred C
Q 034875 80 S 80 (80)
Q Consensus 80 ~ 80 (80)
|
T Consensus 297 s 297 (805)
T KOG1065|consen 297 S 297 (805)
T ss_pred h
Confidence 7
No 3
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.78 E-value=2.7e-19 Score=146.84 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=62.9
Q ss_pred CccceeeEEEEEccCCeeeEEEeecCceeEEEccCCc--eEEEEec-CCccEEEeCCCCCHHHHHHHhhhccCCCCCCCC
Q 034875 2 SLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKES--TIQFIAP-SSYPVITFGPFTSPTAVLVSLSHAVGNLLDQAF 78 (80)
Q Consensus 2 ~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d~~~~~--~~~f~a~-~~~~~f~~G~gP~p~~Vv~~Yt~ltG~~~mPp~ 78 (80)
++|++|||+|+. ++||||+||+.+++||++.+. .++|.++ +.+++|++ .||+|++|+++||+||||++|||+
T Consensus 191 ~~Y~~iPf~~s~----~gyGvf~dn~~~~~fd~g~~~~~~~~~~~~g~~ldyy~~-~G~tp~~v~~~Yt~LTGrp~lpP~ 265 (665)
T PRK10658 191 QAYKNIPFYLTN----RGYGVFVNHPQCVSFEVGSEKVSKVQFSVEGEYLEYFVI-DGPTPKEVLDRYTALTGRPALPPA 265 (665)
T ss_pred cccccccEEEec----CcEEEEEcCCCceEEEEecCccceEEEEecCCcEEEEEE-eCCCHHHHHHHHHHHhCCCCCCch
Confidence 589999999984 479999999999999999764 3889888 44443333 449999999999999999999999
Q ss_pred CC
Q 034875 79 SS 80 (80)
Q Consensus 79 ~~ 80 (80)
|+
T Consensus 266 Wa 267 (665)
T PRK10658 266 WS 267 (665)
T ss_pred hh
Confidence 96
No 4
>PRK10426 alpha-glucosidase; Provisional
Probab=99.74 E-value=3.5e-18 Score=139.52 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=62.1
Q ss_pred CccceeeEEEEEccCCeeeEEEeecCceeEEEccCCce--EEEEec-CCccEEEeCCCCCHHHHHHHhhhccCCCCCCCC
Q 034875 2 SLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKEST--IQFIAP-SSYPVITFGPFTSPTAVLVSLSHAVGNLLDQAF 78 (80)
Q Consensus 2 ~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d~~~~~~--~~f~a~-~~~~~f~~G~gP~p~~Vv~~Yt~ltG~~~mPp~ 78 (80)
++|++|||||+.+ .||||+||+.+++||++.++. +++++. .|+||+. | |+|++||++||+||||++|||+
T Consensus 134 ~tY~~iPf~iSs~----~ygv~~dn~~~~~fd~~~~~~~~~~~~~~~~d~y~~~-G--~~~~~vi~~yt~ltGr~p~~P~ 206 (635)
T PRK10426 134 WTYFPQPTFVSSQ----KYYCHVDNSAYMNFDFSAPEYHELELWEDKATLRFEC-A--DTYISLLEKLTALFGRQPELPD 206 (635)
T ss_pred cccceeCEEEEcC----CEEEEEcCCCcEEEEecCCCccEEEEEeCCeeEEEEe-C--CCHHHHHHHHHHhhCCCCCCCh
Confidence 6899999999852 499999999999999997654 677665 5777553 6 9999999999999999999999
Q ss_pred CC
Q 034875 79 SS 80 (80)
Q Consensus 79 ~~ 80 (80)
|+
T Consensus 207 Wa 208 (635)
T PRK10426 207 WA 208 (635)
T ss_pred hh
Confidence 95
No 5
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.69 E-value=5.9e-17 Score=135.32 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=64.0
Q ss_pred CCccceeeEEEEEccCCeeeEEEeecCceeEEEccCCce--EEEEecC-CccEEEeCCCCCHHHHHHHhhhccCCCCCCC
Q 034875 1 MSLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKEST--IQFIAPS-SYPVITFGPFTSPTAVLVSLSHAVGNLLDQA 77 (80)
Q Consensus 1 ~~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d~~~~~~--~~f~a~~-~~~~f~~G~gP~p~~Vv~~Yt~ltG~~~mPp 77 (80)
.+||++|||+++. ..||+|+||+..+.||++.+.. ..|++++ ++++|++ .||++++|+++||+|||||+|||
T Consensus 188 ~~~y~~iPf~~s~----~gyg~~~~n~~~~~fd~~~~~~~~~~~~~e~~~ldyyv~-~G~~~~~vi~~yt~lTGkp~l~P 262 (772)
T COG1501 188 DNLYASIPFYLSS----RGYGLFVDNSAYGSFDVGSEEYSYVQFSVEGGQLDYYVI-AGPTPKDVLEKYTDLTGKPPLPP 262 (772)
T ss_pred ccccccCCEEEEc----cceEEEEECCCceEEEcCCcceEEEEEEecCCcEEEEEE-eCCCHHHHHHHHHHhhCCCCCCC
Confidence 4799999999996 7899999999999999998654 6688883 4443333 44999999999999999999999
Q ss_pred CCC
Q 034875 78 FSS 80 (80)
Q Consensus 78 ~~~ 80 (80)
+||
T Consensus 263 ~Wa 265 (772)
T COG1501 263 KWA 265 (772)
T ss_pred cee
Confidence 996
No 6
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.8e-14 Score=117.61 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=65.6
Q ss_pred CCccceeeEEEEEccCCeeeEEEeecCceeEEEccCCc---------------------eEEEEec-CCccEEEeCCCCC
Q 034875 1 MSLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKES---------------------TIQFIAP-SSYPVITFGPFTS 58 (80)
Q Consensus 1 ~~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d~~~~~---------------------~~~f~a~-~~~~~f~~G~gP~ 58 (80)
|.||+||||.++..+ .+.-|||..|...+-+|...+. ...|-++ |-.++|++ -||+
T Consensus 259 malYGSIP~m~ah~~-~r~~g~fW~NAAeTWVDi~~~t~~~~~s~~~~~~~~s~~~p~~~thw~SEsGiiDvFi~-lGP~ 336 (915)
T KOG1066|consen 259 MALYGSIPFMLAHGP-NRDVGIFWLNAAETWVDIQSSTTDGLFSKMVDPVSGSQKVPQTDTHWMSESGIIDVFIF-LGPK 336 (915)
T ss_pred chheecccEEEecCC-CCceeeEEecchhheEEeeccccccccccccccCCCCCCCCCccceeeccCCcEEEEEE-eCCC
Confidence 689999999999765 4899999999999999987432 1466677 66666665 6699
Q ss_pred HHHHHHHhhhccCCCCCCCCCC
Q 034875 59 PTAVLVSLSHAVGNLLDQAFSS 80 (80)
Q Consensus 59 p~~Vv~~Yt~ltG~~~mPp~~~ 80 (80)
|+||.+||+.|||+++|||+.|
T Consensus 337 ~~Dv~~qyaaLTG~~~LPplFs 358 (915)
T KOG1066|consen 337 PSDVFRQYAALTGTTPLPPLFS 358 (915)
T ss_pred hhHHHHHHHhhcCCCCCCchhh
Confidence 9999999999999999999875
No 7
>PF13802 Gal_mutarotas_2: Galactose mutarotase-like; PDB: 1XSI_F 1XSK_D 1WE5_E 2F2H_F 1XSJ_F 2G3N_C 2G3M_F 3POC_A 3MKK_A 3PHA_A ....
Probab=99.17 E-value=4.4e-11 Score=72.64 Aligned_cols=31 Identities=35% Similarity=0.603 Sum_probs=26.7
Q ss_pred CccceeeEEEEEccCCeeeEEEeecCceeEEE
Q 034875 2 SLYQSHPWVLAVLPNGEALGVLADTTRRCEID 33 (80)
Q Consensus 2 ~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d 33 (80)
+||+||||+|+++ ++++||||+||+++++||
T Consensus 38 ~lY~siPf~~~~~-s~~~yGvf~dn~~~~~~D 68 (68)
T PF13802_consen 38 PLYKSIPFFIAHR-SGKGYGVFFDNPSRTFFD 68 (68)
T ss_dssp -BSEEEEEEEEEE-CTCEEEEEEE-SS-EEEE
T ss_pred cccccEeEEEEeC-CCCEEEEEEeCCCceEEC
Confidence 7999999999997 789999999999999998
No 8
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=98.30 E-value=2.7e-07 Score=71.10 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=20.4
Q ss_pred eCCCCCHHHHHHHhhhccCCCCCCCCCC
Q 034875 53 FGPFTSPTAVLVSLSHAVGNLLDQAFSS 80 (80)
Q Consensus 53 ~G~gP~p~~Vv~~Yt~ltG~~~mPp~~~ 80 (80)
.| |+|++|+++|++||||++|||+|+
T Consensus 4 ~G--~~~~~v~~~y~~ltG~~~~pP~wa 29 (441)
T PF01055_consen 4 SG--PTPKEVLRQYTELTGRPPLPPRWA 29 (441)
T ss_dssp EE--SSHHHHHHHHHHHHSSS----GGG
T ss_pred eC--cCHHHHHHHHHHHHCCCCCCchhh
Confidence 47 999999999999999999999984
No 9
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=36.43 E-value=43 Score=20.20 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=16.3
Q ss_pred ceeeEEEEEccCCe--eeEEEe
Q 034875 5 QSHPWVLAVLPNGE--ALGVLA 24 (80)
Q Consensus 5 ~shPf~l~l~~~G~--a~Gvff 24 (80)
.-+||.|.+.++|. ..++++
T Consensus 22 ~g~~W~l~~~~~~~~~~l~~~L 43 (119)
T PF00917_consen 22 GGYPWRLKVYPKGNGKYLSVYL 43 (119)
T ss_dssp TSEEEEEEEETTESTTEEEEEE
T ss_pred CCEEEEEEEEeCCCcCcEEEEE
Confidence 35899999999888 667766
No 10
>PF04038 DUF381: Domain of unknown function (DUF381); InterPro: IPR007181 This is a strongly conserved YPLM motif. It is found C-terminal to another domain of unknown function (IPR007179 from INTERPRO).; PDB: 2IEC_D 2OGF_C 2I52_B.
Probab=35.39 E-value=11 Score=22.96 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=5.0
Q ss_pred HhhhccCCC
Q 034875 65 SLSHAVGNL 73 (80)
Q Consensus 65 ~Yt~ltG~~ 73 (80)
.||+|+|+|
T Consensus 21 gYteL~G~m 29 (62)
T PF04038_consen 21 GYTELTGRM 29 (62)
T ss_dssp T-EE--TTT
T ss_pred cEEeeEccc
Confidence 499999997
No 11
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=35.25 E-value=79 Score=21.10 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=32.8
Q ss_pred CccceeeEEEEEccCCeeeEEEeecCceeEEEccCCc--eEEEEec
Q 034875 2 SLYQSHPWVLAVLPNGEALGVLADTTRRCEIDLRKES--TIQFIAP 45 (80)
Q Consensus 2 ~LY~shPf~l~l~~~G~a~GvffdNt~~~~~d~~~~~--~~~f~a~ 45 (80)
.||=.+.++|.+.+||..-|.-=+++..+.+.+.... .+.++..
T Consensus 6 ~Ly~~~~~~L~I~~~G~V~Gt~~~~~~~~ile~~s~~~g~V~ik~~ 51 (126)
T smart00442 6 QLYCRNGQHLQILPDGTVDGTRDESSSFTILEIIAVAVGVVAIKGV 51 (126)
T ss_pred EEEeCCCeEEEEcCCceEecccCCCCcceEEEEEeccCCEEEEEEc
Confidence 4777778999999999999998777777777665432 2555555
No 12
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=33.72 E-value=62 Score=19.90 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=20.5
Q ss_pred EEEecCCccEEEeCCCCCHHHHHHHhhhccCC
Q 034875 41 QFIAPSSYPVITFGPFTSPTAVLVSLSHAVGN 72 (80)
Q Consensus 41 ~f~a~~~~~~f~~G~gP~p~~Vv~~Yt~ltG~ 72 (80)
.|...+..+.| ..|+.++|+++|.+..|.
T Consensus 46 v~sp~gk~~~f---~s~s~~~vl~ry~~~~~~ 74 (77)
T cd00265 46 IFSSSGKLYEF---SSPSMEKIIERYQKTSGS 74 (77)
T ss_pred EEcCCCceEEe---cCCCHHHHHHHHHhcccc
Confidence 34444555544 348999999999998775
No 13
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=29.70 E-value=42 Score=24.08 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEeCCCCC----HHHHHHHhhhccCCCCCCC
Q 034875 50 VITFGPFTS----PTAVLVSLSHAVGNLLDQA 77 (80)
Q Consensus 50 ~f~~G~gP~----p~~Vv~~Yt~ltG~~~mPp 77 (80)
+|+|| |+ |++|++++.+-.=|.||.|
T Consensus 98 ~llFG--~Es~GLP~~i~~~~~~~~irIPm~~ 127 (155)
T COG0219 98 YLLFG--PESRGLPEEILDAAPDRCIRIPMRP 127 (155)
T ss_pred EEEEC--CCCCCCCHHHHHhCccceEEeccCC
Confidence 45569 76 8899999998866777765
No 14
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=24.52 E-value=97 Score=20.83 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.1
Q ss_pred ccEEEeCCCCCHHHHHHHhhhccCC
Q 034875 48 YPVITFGPFTSPTAVLVSLSHAVGN 72 (80)
Q Consensus 48 ~~~f~~G~gP~p~~Vv~~Yt~ltG~ 72 (80)
-.+++.|.|||.++-++...++-++
T Consensus 25 ~~~~IvgaGPSL~~~i~~lk~~~~~ 49 (170)
T PF01973_consen 25 KPAIIVGAGPSLDKNIELLKENRNK 49 (170)
T ss_pred CeEEEEecCCCHHHHHHHHHhcccC
Confidence 4456668999999988877655443
No 15
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.17 E-value=61 Score=18.61 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhhhcc
Q 034875 55 PFTSPTAVLVSLSHAV 70 (80)
Q Consensus 55 ~gP~p~~Vv~~Yt~lt 70 (80)
.|-++++++++|-.|+
T Consensus 30 ~G~s~eeI~~~yp~Lt 45 (56)
T PF04255_consen 30 AGESPEEIAEDYPSLT 45 (56)
T ss_dssp TT--HHHHHHHSTT--
T ss_pred cCCCHHHHHHHCCCCC
Confidence 4599999999997664
No 16
>PF14526 Cass2: Integron-associated effector binding protein; PDB: 3GK6_A.
Probab=21.48 E-value=2.3e+02 Score=18.01 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=31.2
Q ss_pred cCCeeeEEEeecCc---eeEEEcc---CC----c-eEEEEec--CCccEEEeCCCCCHHHHHHHhhhcc
Q 034875 15 PNGEALGVLADTTR---RCEIDLR---KE----S-TIQFIAP--SSYPVITFGPFTSPTAVLVSLSHAV 70 (80)
Q Consensus 15 ~~G~a~GvffdNt~---~~~~d~~---~~----~-~~~f~a~--~~~~~f~~G~gP~p~~Vv~~Yt~lt 70 (80)
+++..|||+.|.-. ..++.++ ++ + .....-. +.|-+|.. .|+.|++|.+.|.++-
T Consensus 46 ~~~~~y~vy~~ye~~~~~~~~~vg~~v~~~~~~~~~~~~~~ip~~~Y~~~~~-~G~~~~~i~~~w~~i~ 113 (150)
T PF14526_consen 46 PDGPIYGVYHDYESYEGDYDYEVGVPVKEDDEVPEGFVIIEIPAGKYAVFTV-KGPYPEAIIEAWQKIW 113 (150)
T ss_dssp TT--EEEEEE--SSTTS-EEEEEEESS--TTTSTT-EE-EEE--EEEEEEEE-ESSTTHHHHHHHHHHH
T ss_pred CCCCEEEEEeccccCCCCeEEEEEEEecCCccCCCCceEEEECCEeEEEEEE-eCCChHHHHHHHHHHH
Confidence 36899999999743 4444444 11 1 1333333 57777775 7799999999988763
No 17
>COG0254 RpmE Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]
Probab=21.38 E-value=23 Score=22.51 Aligned_cols=8 Identities=25% Similarity=0.704 Sum_probs=6.9
Q ss_pred ceeeEEEE
Q 034875 5 QSHPWVLA 12 (80)
Q Consensus 5 ~shPf~l~ 12 (80)
++||||.+
T Consensus 42 ~~HPFyTG 49 (75)
T COG0254 42 KCHPFYTG 49 (75)
T ss_pred CCCCcCcC
Confidence 58999987
No 18
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=21.37 E-value=56 Score=26.28 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=12.3
Q ss_pred HHHHHHHhhhccCCCCCCCCC
Q 034875 59 PTAVLVSLSHAVGNLLDQAFS 79 (80)
Q Consensus 59 p~~Vv~~Yt~ltG~~~mPp~~ 79 (80)
..+++++ .|.||||||.
T Consensus 139 l~e~L~~----~G~~PLPPYI 155 (348)
T COG0809 139 LLELLEK----YGEMPLPPYI 155 (348)
T ss_pred HHHHHHH----cCCCCCCccc
Confidence 3355555 5999999985
No 19
>PF08850 DUF1820: Domain of unknown function (DUF1820); InterPro: IPR014949 This protein includes small functionally uncharacterised proteins of around 100 amino acids in length.
Probab=21.00 E-value=1.1e+02 Score=20.56 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=19.6
Q ss_pred CccceeeE-EEEEccCCeeeEEEeecCceeEEEccC
Q 034875 2 SLYQSHPW-VLAVLPNGEALGVLADTTRRCEIDLRK 36 (80)
Q Consensus 2 ~LY~shPf-~l~l~~~G~a~GvffdNt~~~~~d~~~ 36 (80)
.+|||++| |+.++ ++.|+.....-+|=..
T Consensus 21 ~v~~s~l~GFieIe------d~vF~e~s~lvVDP~e 50 (100)
T PF08850_consen 21 SVYQSDLYGFIEIE------DFVFGERSSLVVDPSE 50 (100)
T ss_pred EecCCCceeEEEeE------EEEEcCcceEEECCch
Confidence 57888888 88885 3666666666565443
No 20
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=20.84 E-value=61 Score=25.77 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=13.2
Q ss_pred HHHhhhccCCCCCCCCC
Q 034875 63 LVSLSHAVGNLLDQAFS 79 (80)
Q Consensus 63 v~~Yt~ltG~~~mPp~~ 79 (80)
+..+-+-.|++|+|||.
T Consensus 137 ~~~~l~~~G~~PlPPYI 153 (342)
T PRK00147 137 FLELLEELGHMPLPPYI 153 (342)
T ss_pred HHHHHHhcCCCCCCccc
Confidence 34566677999999985
No 21
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=20.73 E-value=61 Score=25.80 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=13.6
Q ss_pred HHHhhhccCCCCCCCCC
Q 034875 63 LVSLSHAVGNLLDQAFS 79 (80)
Q Consensus 63 v~~Yt~ltG~~~mPp~~ 79 (80)
+..+-+-.|++|+|||.
T Consensus 138 ~~~~l~~~G~~PlPPYI 154 (344)
T TIGR00113 138 LLDVLESYGHMPLPPYI 154 (344)
T ss_pred HHHHHHhcCCCCCCccc
Confidence 44567778999999985
No 22
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=20.56 E-value=65 Score=22.43 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=43.2
Q ss_pred ceeeEEEEEccC---CeeeEEEeecCceeEEEccCCceEEEEec-CCcc-EEEeCCCCCHHHHHHHhhhcc------CCC
Q 034875 5 QSHPWVLAVLPN---GEALGVLADTTRRCEIDLRKESTIQFIAP-SSYP-VITFGPFTSPTAVLVSLSHAV------GNL 73 (80)
Q Consensus 5 ~shPf~l~l~~~---G~a~GvffdNt~~~~~d~~~~~~~~f~a~-~~~~-~f~~G~gP~p~~Vv~~Yt~lt------G~~ 73 (80)
++|.|+-.+... +.+--++.|=.+|++|.++... -.|.+. ..+. +|+ |.-...+++|+--.+.. =.|
T Consensus 31 G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt-~~Y~~ll~~LP~vFV-G~~~rL~~iV~~mc~Aak~Slk~~gm 108 (131)
T TIGR01615 31 GKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPT-EEYKRLLESLPEVFV-GTTERLRQLVRLMCDAAKKSLKKKGM 108 (131)
T ss_pred CceeeEEEEecCCCCCCcceEEEeccchhhceecCCC-HHHHHHHHhCCcceE-CCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456666555432 2345789999999999987642 234444 3444 666 85555666666554443 346
Q ss_pred CCCC
Q 034875 74 LDQA 77 (80)
Q Consensus 74 ~mPp 77 (80)
+|||
T Consensus 109 hlPP 112 (131)
T TIGR01615 109 PLPP 112 (131)
T ss_pred CCCC
Confidence 7777
No 23
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=20.22 E-value=68 Score=22.80 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=12.1
Q ss_pred Cccce--ee----EEEEEccCCe
Q 034875 2 SLYQS--HP----WVLAVLPNGE 18 (80)
Q Consensus 2 ~LY~s--hP----f~l~l~~~G~ 18 (80)
|.|+| |= ||++|.++|.
T Consensus 111 ntY~S~~y~~~~~~yvaL~k~G~ 133 (155)
T KOG3885|consen 111 NTYASAKYRHNGEWFVALNKKGI 133 (155)
T ss_pred hheeehhhcccccEEEEECCCCC
Confidence 45666 44 9999987764
Done!