Citrus Sinensis ID: 034883

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSCQY
Secondary Structure (PSIPRED)
cccccEEEEEEEEcccccccEEEEEccccccHHHHHHHHHHHccccccEEEEEEcccccccccccccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEcccccccEEEEEccccccHHHHHHHHHHHcccccccEEEEEcccccEccccccccEEEEEEEEEccc
Coil and Loop (DISEMBL)
masggkvsfkvtltsdpklpfkvfsvpeaapfTAVLKFAAEefkvppqtsaiitndgvginpqqsaGILFISLDFVSCQY
Flexible Loop (DISEMBL)
masggkvsfkvtltsdpklpFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSCQY
Low Complexity Region (SEG)
MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSCQY
Disordered region (IsUnstruct)
**********VTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSC**
Disordered Region (DISOPRED)
******V***VTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSCQY
Disordered Region (DISEMBL)
********FKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSCQY
Disordered Region (DISPRO)
****GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSCQY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDFVSCQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q9CA23	93	Ubiquitin-fold modifier 1	yes	no	0.887	0.763	0.915	7e-31
Q94DM8	102	Ubiquitin-fold modifier 1	yes	no	0.825	0.647	0.924	5e-28
Q5PU89	99	Ubiquitin-fold modifier 1	N/A	no	0.825	0.666	0.878	7e-27
Q94EY2	96	Ubiquitin-fold modifier 1	N/A	no	0.825	0.687	0.878	1e-26
Q7PXE2	88	Ubiquitin-fold modifier 1	yes	no	0.862	0.784	0.797	4e-26
Q176V0	86	Ubiquitin-fold modifier 1	N/A	no	0.862	0.802	0.816	6e-26
A8Q8M5	90	Ubiquitin-fold modifier 1	N/A	no	0.837	0.744	0.835	1e-25
Q61E22	93	Ubiquitin-fold modifier 1	N/A	no	0.875	0.752	0.785	4e-25
B4JVK9	84	Ubiquitin-fold modifier 1	N/A	no	0.825	0.785	0.803	4e-25
P34661	94	Ubiquitin-fold modifier 1	yes	no	0.862	0.734	0.782	8e-25

>sp|Q9CA23|UFM1_ARATH Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=3 SV=1

 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/71 (91%), Positives = 69/71 (97%)

Query: 1  MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60
          MA+GGKVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GI
Sbjct: 1  MATGGKVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGI 60

Query: 61 NPQQSAGILFI 71
          NPQQSAG +F+
Sbjct: 61 NPQQSAGNVFL 71

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94DM8|UFM1_ORYSJ Ubiquitin-fold modifier 1 OS=Oryza sativa subsp. japonica GN=Os01g0962400 PE=3 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/66 (92%), Positives = 64/66 (96%)

Query: 6  KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
          KVSFK+ LTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS
Sbjct: 16 KVSFKIILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 75

Query: 66 AGILFI 71
          AG +F+
Sbjct: 76 AGNVFL 81

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5PU89|UFM1_CHLIN Ubiquitin-fold modifier 1 OS=Chlamydomonas incerta GN=PR46a PE=3 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/66 (87%), Positives = 63/66 (95%)

Query: 6  KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
          KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINPQQ+
Sbjct: 13 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQT 72

Query: 66 AGILFI 71
          AG +F+
Sbjct: 73 AGNVFL 78

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Chlamydomonas incerta (taxid: 51695)

>sp|Q94EY2|UFM1_CHLRE Ubiquitin-fold modifier 1 OS=Chlamydomonas reinhardtii GN=PR46a PE=3 SV=1

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/66 (87%), Positives = 62/66 (93%)

Query: 6  KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
          KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINPQQ 
Sbjct: 10 KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQI 69

Query: 66 AGILFI 71
          AG +F+
Sbjct: 70 AGNVFL 75

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q7PXE2|UFM1_ANOGA Ubiquitin-fold modifier 1 OS=Anopheles gambiae GN=AGAP001364 PE=3 SV=3

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 63/69 (91%)

Query: 3  SGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 62
          +  KV+FK+TLTSDPKLPFKV SVPEA PFTAVLKFAAEEFKVPP TSAIIT+DG+GINP
Sbjct: 2  AASKVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFKVPPATSAIITDDGIGINP 61

Query: 63 QQSAGILFI 71
          QQ+AG +F+
Sbjct: 62 QQTAGTVFL 70

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Anopheles gambiae (taxid: 7165)

>sp|Q176V0|UFM1_AEDAE Ubiquitin-fold modifier 1 OS=Aedes aegypti GN=AAEL006251 PE=3 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/71 (81%), Positives = 65/71 (91%), Gaps = 2/71 (2%)

Query: 1  MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60
          MAS  KV+FK+TLTSDPKLPFKV SVPEA PFTAVLKFAAEEFKVPP TSAIIT+DG+GI
Sbjct: 1  MAS--KVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFKVPPATSAIITDDGIGI 58

Query: 61 NPQQSAGILFI 71
          NPQQ+AG +F+
Sbjct: 59 NPQQTAGNVFL 69

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Aedes aegypti (taxid: 7159)

>sp|A8Q8M5|UFM1_BRUMA Ubiquitin-fold modifier 1 OS=Brugia malayi GN=Bm1_46275 PE=3 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query: 5  GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQ 64
          GKV+FK+TLTSDPKLPFKV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDGVGINP Q
Sbjct: 6  GKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGINPTQ 65

Query: 65 SAGILFI 71
          SAG +F+
Sbjct: 66 SAGNIFL 72

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Brugia malayi (taxid: 6279)

>sp|Q61E22|UFM1_CAEBR Ubiquitin-fold modifier 1 OS=Caenorhabditis briggsae GN=CBG12253 PE=3 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 62/70 (88%)

Query: 2  ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61
          A   KV+FK+TLTSDPKLPFKV SVPEAAPFT+VL++AAEEFKVP  TSAIITNDGVGIN
Sbjct: 7  APAAKVTFKITLTSDPKLPFKVLSVPEAAPFTSVLRYAAEEFKVPAATSAIITNDGVGIN 66

Query: 62 PQQSAGILFI 71
          P QSAG +F+
Sbjct: 67 PAQSAGNIFL 76

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Caenorhabditis briggsae (taxid: 6238)

>sp|B4JVK9|UFM1_DROGR Ubiquitin-fold modifier 1 OS=Drosophila grimshawi GN=GH22653 PE=3 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/66 (80%), Positives = 63/66 (95%)

Query: 6  KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
          KV+FK+TLTSDPKLPFKV SVPEA PFTAVLKFA+EEFKVPP+TSAIIT+DG+GI+PQQ+
Sbjct: 3  KVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFASEEFKVPPETSAIITDDGIGISPQQT 62

Query: 66 AGILFI 71
          AG +F+
Sbjct: 63 AGNVFL 68

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Drosophila grimshawi (taxid: 7222)

>sp|P34661|UFM1_CAEEL Ubiquitin-fold modifier 1 OS=Caenorhabditis elegans GN=tag-277 PE=1 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%)

Query: 3  SGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 62
          +G KV+FK+TLTSDPKLPFKV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDGVG+NP
Sbjct: 10 AGSKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNP 69

Query: 63 QQSAGILFI 71
           Q AG +F+
Sbjct: 70 AQPAGNIFL 78

Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
356552829	94	PREDICTED: ubiquitin-fold modifier 1-lik	0.887	0.755	0.957	2e-30
356509448	88	PREDICTED: ubiquitin-fold modifier 1-lik	0.887	0.806	0.943	9e-30
15217447	93	ubiquitin-fold modifier 1 [Arabidopsis t	0.887	0.763	0.915	3e-29
449445140	90	PREDICTED: ubiquitin-fold modifier 1-lik	0.875	0.777	0.942	4e-29
225459477	97	PREDICTED: ubiquitin-fold modifier 1 [Vi	0.862	0.711	0.942	7e-29
255557781	92	Ubiquitin-fold modifier 1 precursor, put	0.875	0.760	0.928	8e-29
357488997	95	Ubiquitin-fold modifier [Medicago trunca	0.85	0.715	0.955	9e-29
297839629	94	hypothetical protein ARALYDRAFT_895660 [	0.85	0.723	0.926	5e-28
168052114	95	predicted protein [Physcomitrella patens	0.862	0.726	0.913	6e-28
116779359	87	unknown [Picea sitchensis] gi|116789163|	0.862	0.793	0.898	1e-27

>gi|356552829|ref|XP_003544765.1| PREDICTED: ubiquitin-fold modifier 1-like [Glycine max]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/71 (95%), Positives = 70/71 (98%)

Query: 1  MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60
          MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI
Sbjct: 1  MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60

Query: 61 NPQQSAGILFI 71
          NPQQSAG +F+
Sbjct: 61 NPQQSAGNVFL 71

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509448|ref|XP_003523461.1| PREDICTED: ubiquitin-fold modifier 1-like [Glycine max] gi|356515854|ref|XP_003526612.1| PREDICTED: ubiquitin-fold modifier 1 [Glycine max] gi|255627345|gb|ACU14017.1| unknown [Glycine max]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 69/71 (97%)

Query: 1  MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60
          MA GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI
Sbjct: 1  MAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60

Query: 61 NPQQSAGILFI 71
          NPQQSAG +F+
Sbjct: 61 NPQQSAGNVFL 71

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217447|ref|NP_177894.1| ubiquitin-fold modifier 1 [Arabidopsis thaliana] gi|20140765|sp|Q9CA23.1|UFM1_ARATH RecName: Full=Ubiquitin-fold modifier 1; Flags: Precursor gi|12323301|gb|AAG51633.1|AC012193_15 unknown protein; 14107-15252 [Arabidopsis thaliana] gi|20260380|gb|AAM13088.1| unknown protein [Arabidopsis thaliana] gi|23197778|gb|AAN15416.1| unknown protein [Arabidopsis thaliana] gi|332197891|gb|AEE36012.1| ubiquitin-fold modifier 1 [Arabidopsis thaliana]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/71 (91%), Positives = 69/71 (97%)

Query: 1  MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60
          MA+GGKVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GI
Sbjct: 1  MATGGKVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGI 60

Query: 61 NPQQSAGILFI 71
          NPQQSAG +F+
Sbjct: 61 NPQQSAGNVFL 71

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445140|ref|XP_004140331.1| PREDICTED: ubiquitin-fold modifier 1-like [Cucumis sativus] gi|449527113|ref|XP_004170557.1| PREDICTED: ubiquitin-fold modifier 1-like [Cucumis sativus]

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/70 (94%), Positives = 68/70 (97%)

Query: 2  ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61
          A GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN
Sbjct: 4  AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 63

Query: 62 PQQSAGILFI 71
          PQQSAG +F+
Sbjct: 64 PQQSAGNVFL 73

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459477|ref|XP_002285835.1| PREDICTED: ubiquitin-fold modifier 1 [Vitis vinifera] gi|302141861|emb|CBI19064.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query: 3  SGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 62
          +GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP
Sbjct: 2  AGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 61

Query: 63 QQSAGILFI 71
          QQSAG +F+
Sbjct: 62 QQSAGNVFL 70

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557781|ref|XP_002519920.1| Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis] gi|223540966|gb|EEF42524.1| Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/70 (92%), Positives = 67/70 (95%)

Query: 2  ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61
            GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN
Sbjct: 5  GGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 64

Query: 62 PQQSAGILFI 71
          PQQSAG +F+
Sbjct: 65 PQQSAGNVFL 74

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488997|ref|XP_003614786.1| Ubiquitin-fold modifier [Medicago truncatula] gi|355516121|gb|AES97744.1| Ubiquitin-fold modifier [Medicago truncatula] gi|388495206|gb|AFK35669.1| unknown [Medicago truncatula]

 Score =  130 bits (327), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 65/68 (95%), Positives = 67/68 (98%)

Query: 4  GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQ 63
          GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQ
Sbjct: 5  GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQ 64

Query: 64 QSAGILFI 71
          QSAG +F+
Sbjct: 65 QSAGNVFL 72

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839629|ref|XP_002887696.1| hypothetical protein ARALYDRAFT_895660 [Arabidopsis lyrata subsp. lyrata] gi|297333537|gb|EFH63955.1| hypothetical protein ARALYDRAFT_895660 [Arabidopsis lyrata subsp. lyrata]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 66/68 (97%)

Query: 4  GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQ 63
          GGKVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GINPQ
Sbjct: 5  GGKVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGINPQ 64

Query: 64 QSAGILFI 71
          QSAG +F+
Sbjct: 65 QSAGNVFL 72

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168052114|ref|XP_001778496.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670094|gb|EDQ56669.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 66/69 (95%)

Query: 3  SGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 62
          SGGKVSFKVTLTSDPKLP+KVFSVPE APF AVLKFAAEEFKVPPQTSAIITNDGVGINP
Sbjct: 7  SGGKVSFKVTLTSDPKLPYKVFSVPEEAPFVAVLKFAAEEFKVPPQTSAIITNDGVGINP 66

Query: 63 QQSAGILFI 71
          QQSAG +F+
Sbjct: 67 QQSAGNVFL 75

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779359|gb|ABK21252.1| unknown [Picea sitchensis] gi|116789163|gb|ABK25139.1| unknown [Picea sitchensis]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/69 (89%), Positives = 67/69 (97%)

Query: 3  SGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 62
          SGGKVSFK+TLTSDPKLPFKVF+VPE APFTAVLKFAAEEFKVPPQTSAIIT+DGVGINP
Sbjct: 2  SGGKVSFKITLTSDPKLPFKVFNVPEEAPFTAVLKFAAEEFKVPPQTSAIITDDGVGINP 61

Query: 63 QQSAGILFI 71
          QQSAG +F+
Sbjct: 62 QQSAGNIFL 70

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
TAIR|locus:2203246	93	CCP2 "AT1G77710" [Arabidopsis	0.887	0.763	0.915	2.3e-30
UNIPROTKB|Q2KJG2	85	UFM1 "Ubiquitin-fold modifier	0.825	0.776	0.787	6.8e-24
UNIPROTKB|F1Q2H2	84	UFM1 "Uncharacterized protein"	0.825	0.785	0.787	6.8e-24
UNIPROTKB|P61960	85	UFM1 "Ubiquitin-fold modifier	0.825	0.776	0.787	6.8e-24
UNIPROTKB|Q4R4I2	85	UFM1 "Ubiquitin-fold modifier	0.825	0.776	0.787	6.8e-24
UNIPROTKB|Q5R4N5	85	UFM1 "Ubiquitin-fold modifier	0.825	0.776	0.787	6.8e-24
MGI|MGI:1915140	85	Ufm1 "ubiquitin-fold modifier	0.825	0.776	0.787	6.8e-24
RGD|1304890	85	Ufm1 "ubiquitin-fold modifier	0.825	0.776	0.787	6.8e-24
UNIPROTKB|F1P4P0	84	UFM1 "Ubiquitin-fold modifier	0.825	0.785	0.787	1.1e-23
UNIPROTKB|Q5ZMK7	85	UFM1 "Ubiquitin-fold modifier	0.825	0.776	0.787	1.1e-23

TAIR|locus:2203246 CCP2 "AT1G77710" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 65/71 (91%), Positives = 69/71 (97%)

Query:     1 MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60
             MA+GGKVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GI
Sbjct:     1 MATGGKVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGI 60

Query:    61 NPQQSAGILFI 71
             NPQQSAG +F+
Sbjct:    61 NPQQSAGNVFL 71

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

UNIPROTKB|Q2KJG2 UFM1 "Ubiquitin-fold modifier 1" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 62

Query:    66 AGILFI 71
             AG +F+
Sbjct:    63 AGNVFL 68

GO:0071569 "protein ufmylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|F1Q2H2 UFM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     2 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 61

Query:    66 AGILFI 71
             AG +F+
Sbjct:    62 AGNVFL 67

GO:0071569 "protein ufmylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P61960 UFM1 "Ubiquitin-fold modifier 1" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 62

Query:    66 AGILFI 71
             AG +F+
Sbjct:    63 AGNVFL 68

GO:0005737 "cytoplasm" evidence=IDA

GO:0071569 "protein ufmylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q4R4I2 UFM1 "Ubiquitin-fold modifier 1" [Macaca fascicularis (taxid:9541)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 62

Query:    66 AGILFI 71
             AG +F+
Sbjct:    63 AGNVFL 68

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

UNIPROTKB|Q5R4N5 UFM1 "Ubiquitin-fold modifier 1" [Pongo abelii (taxid:9601)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 62

Query:    66 AGILFI 71
             AG +F+
Sbjct:    63 AGNVFL 68

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

MGI|MGI:1915140 Ufm1 "ubiquitin-fold modifier 1" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 62

Query:    66 AGILFI 71
             AG +F+
Sbjct:    63 AGNVFL 68

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0071569 "protein ufmylation" evidence=ISO;IDA

RGD|1304890 Ufm1 "ubiquitin-fold modifier 1" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     3 KVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 62

Query:    66 AGILFI 71
             AG +F+
Sbjct:    63 AGNVFL 68

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0071569 "protein ufmylation" evidence=ISO;ISS

UNIPROTKB|F1P4P0 UFM1 "Ubiquitin-fold modifier 1" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KV+FKVTLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     2 KVTFKVTLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 61

Query:    66 AGILFI 71
             AG +F+
Sbjct:    62 AGNVFL 67

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071569 "protein ufmylation" evidence=IEA

UNIPROTKB|Q5ZMK7 UFM1 "Ubiquitin-fold modifier 1" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 52/66 (78%), Positives = 60/66 (90%)

Query:     6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 65
             KV+FKVTLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q+
Sbjct:     3 KVTFKVTLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQT 62

Query:    66 AGILFI 71
             AG +F+
Sbjct:    63 AGNVFL 68

GO:0005737 "cytoplasm" evidence=ISS

GO:0071569 "protein ufmylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q61E22	UFM1_CAEBR	No assigned EC number	0.7857	0.875	0.7526	N/A	no
B5E0K3	UFM1_DROPS	No assigned EC number	0.7727	0.825	0.7857	yes	no
Q5R4N5	UFM1_PONAB	No assigned EC number	0.7878	0.825	0.7764	yes	no
Q5ZMK7	UFM1_CHICK	No assigned EC number	0.7878	0.825	0.7764	yes	no
B0G186	UFM1_DICDI	No assigned EC number	0.6969	0.825	0.7764	yes	no
Q7PXE2	UFM1_ANOGA	No assigned EC number	0.7971	0.8625	0.7840	yes	no
B4JVK9	UFM1_DROGR	No assigned EC number	0.8030	0.825	0.7857	N/A	no
A8D888	UFM1_ARTSF	No assigned EC number	0.7794	0.85	0.6938	N/A	no
Q5RJW4	UFM1_XENLA	No assigned EC number	0.7424	0.825	0.7764	N/A	no
B0WK43	UFM1_CULQU	No assigned EC number	0.7746	0.8625	0.8117	N/A	no
B3DL37	UFM1_XENTR	No assigned EC number	0.7424	0.825	0.7764	yes	no
A8DYH2	UFM1_DROME	No assigned EC number	0.7727	0.825	0.7586	yes	no
A8Q8M5	UFM1_BRUMA	No assigned EC number	0.8358	0.8375	0.7444	N/A	no
Q4R4I2	UFM1_MACFA	No assigned EC number	0.7878	0.825	0.7764	N/A	no
Q94EY2	UFM1_CHLRE	No assigned EC number	0.8787	0.825	0.6875	N/A	no
B9ENM6	UFM1_SALSA	No assigned EC number	0.7727	0.825	0.66	N/A	no
Q5BJP3	UFM1_RAT	No assigned EC number	0.7878	0.825	0.7764	yes	no
B5LVL2	UFM1_COLLI	No assigned EC number	0.7878	0.825	0.7764	N/A	no
Q94DM8	UFM1_ORYSJ	No assigned EC number	0.9242	0.825	0.6470	yes	no
Q176V0	UFM1_AEDAE	No assigned EC number	0.8169	0.8625	0.8023	N/A	no
P61961	UFM1_MOUSE	No assigned EC number	0.7878	0.825	0.7764	yes	no
P61960	UFM1_HUMAN	No assigned EC number	0.7878	0.825	0.7764	yes	no
Q9CA23	UFM1_ARATH	No assigned EC number	0.9154	0.8875	0.7634	yes	no
Q2KJG2	UFM1_BOVIN	No assigned EC number	0.7878	0.825	0.7764	yes	no
P34661	UFM1_CAEEL	No assigned EC number	0.7826	0.8625	0.7340	yes	no
Q5PU89	UFM1_CHLIN	No assigned EC number	0.8787	0.825	0.6666	N/A	no
Q4N927	UFM1_THEPA	No assigned EC number	0.6617	0.85	0.7391	yes	no
B4KSR4	UFM1_DROMO	No assigned EC number	0.7878	0.825	0.7857	N/A	no
B4GBR1	UFM1_DROPE	No assigned EC number	0.7727	0.825	0.7857	N/A	no
C1BJ98	UFM1_OSMMO	No assigned EC number	0.7727	0.825	0.7252	N/A	no
B4LP65	UFM1_DROVI	No assigned EC number	0.7878	0.825	0.7857	N/A	no
Q803Y4	UFM1_DANRE	No assigned EC number	0.7575	0.825	0.7333	yes	no
Q09JK2	UFM1_ARGMO	No assigned EC number	0.7727	0.825	0.75	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G77710	unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin-like, Ufm1 (InterPro-IPR005375); Has 170 Blast hits to 170 proteins in 79 species- Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink). ; Ubiquitin-like modifier protein which binds to a number of as yet unidentified target proteins (By similarity) (93 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G05350	thiF family protein; thiF family protein; FUNCTIONS IN- binding, oxidoreductase activity, actin [...] (445 aa)				•	•		•		0.986
	AT1G27530	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (174 aa)				•	•		•		0.979
	AT3G55290	short-chain dehydrogenase/reductase (SDR) family protein; short-chain dehydrogenase/reductase ( [...] (280 aa)					•				0.768
	UBL5	UBL5 (UBIQUITIN-LIKE PROTEIN 5); UBIQUITIN-LIKE PROTEIN 5 (UBL5); FUNCTIONS IN- molecular_funct [...] (73 aa)				•			•		0.736
	AT1G53030	cytochrome c oxidase copper chaperone family protein; encodes a copper chaperone, can functiona [...] (72 aa)				•					0.631
	AT5G04750	F1F0-ATPase inhibitor protein, putative; F1F0-ATPase inhibitor protein, putative; FUNCTIONS IN- [...] (94 aa)				•					0.607
	CDC25	CDC25; arsenate reductase/ protein tyrosine phosphatase; Encodes a homolog of yeast cell cycle [...] (146 aa)				•					0.607
	AT2G23090	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (78 aa)				•					0.603
	AT5G38650	proteasome maturation factor UMP1 family protein; proteasome maturation factor UMP1 family prot [...] (141 aa)				•					0.587
	AT4G14615	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (76 aa)				•					0.577

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	80
cd01766	82	cd01766, Ufm1, Urm1-like ubiquitin domain	6e-36
pfam03671	76	pfam03671, Ufm1, Ubiquitin fold modifier 1 protein	2e-34

>gnl|CDD|176361 cd01766, Ufm1, Urm1-like ubiquitin domain

 Score =  115 bits (290), Expect = 6e-36
 Identities = 53/67 (79%), Positives = 60/67 (89%)

Query: 5  GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQ 64
           KV+FK+TLTSDPKLPFKV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q
Sbjct: 1  SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQ 60

Query: 65 SAGILFI 71
          +AG +F+
Sbjct: 61 TAGNVFL 67

Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1. Length = 82

>gnl|CDD|202722 pfam03671, Ufm1, Ubiquitin fold modifier 1 protein

 Score =  111 bits (279), Expect = 2e-34
 Identities = 52/67 (77%), Positives = 60/67 (89%)

Query: 5  GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQ 64
           KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GINP Q
Sbjct: 1  SKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQ 60

Query: 65 SAGILFI 71
          +AG +F+
Sbjct: 61 TAGNVFL 67

This is a family of short ubiquitin-like proteins, that is like neither type-1 or type-2. It is a ubiquitin-fold modifier 1 (Ufm1) that is synthesised in a precursor form of 85 amino-acid residues. In humans the enzyme for Ufm1 is Uba5 and the conjugating enzyme is Ufc1. Prior to activation by Uba5 the extra two amino acids at the C-terminal region of the human pro-Ufm1 protein are removed to expose Gly whose residue is necessary for conjugation to target molecule(s). The mature Ufm1 is conjugated to yet unidentified endogenous proteins. While Ubiquitin and many Ubls possess the conserved C-terminal di-glycine that is adenylated by each specific E1 or E1-like enzyme, respectively, in an ATP-dependent manner, Ufm1(1-83) possesses a single glycine at its C-terminus, which is followed by a Ser-Cys dipeptide in the precursor form of Ufm1. The C-terminally processed Ufm1(1-83) is specifically activated by Uba5, an E1-like enzyme, and then transferred to its cognate Ufc1, an E2-like enzyme. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
cd01766	82	Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-f	100.0
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	100.0
KOG3483	94	consensus Uncharacterized conserved protein [Funct	100.0
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	96.28
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	94.66
cd01612	87	APG12_C Ubiquitin-like domain of APG12. APG12_C Th	93.71
PF04083	63	Abhydro_lipase: Partial alpha/beta-hydrolase lipas	92.08
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	90.92
cd01768	87	RA RA (Ras-associating) ubiquitin domain. The RA (	90.18
smart00314	90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	88.68
PF04110	87	APG12: Ubiquitin-like autophagy protein Apg12 ; In	85.49
PF00788	93	RA: Ras association (RalGDS/AF-6) domain; InterPro	84.73
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	81.6
PRK13226	229	phosphoglycolate phosphatase; Provisional	81.53
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	80.65

>cd01766 Ufm1 Urm1-like ubiquitin domain

Probab=100.00  E-value=8.5e-55  Score=290.33  Aligned_cols=71  Identities=75%  Similarity=1.124  Sum_probs=69.7

Q ss_pred             ceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeeeee
Q 034883            5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDF   75 (80)
Q Consensus         5 ~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh~f   75 (80)
                      +||||||||||||||||||+||||+|||||||||||||||||++|||||||||+||||+|||||||||||=
T Consensus         1 ~KVtFkitltSdp~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgs   71 (82)
T cd01766           1 SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS   71 (82)
T ss_pred             CceEEEEEecCCCCCcceEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999984

Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=100.00  E-value=3.5e-53  Score=279.21  Aligned_cols=71  Identities=80%  Similarity=1.192  Sum_probs=64.8

Q ss_pred             ceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeeeee
Q 034883            5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDF   75 (80)
Q Consensus         5 ~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh~f   75 (80)
                      +||||||+||||||+||||+||||++|||||||||||||+||++|||||||||+||||+|||||||||||=
T Consensus         1 ~kvtfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGs   71 (76)
T PF03671_consen    1 GKVTFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGS   71 (76)
T ss_dssp             SEEEEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-S
T ss_pred             CcEEEEEEEccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999983

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>KOG3483 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-49  Score=270.69  Aligned_cols=74  Identities=74%  Similarity=1.109  Sum_probs=71.8

Q ss_pred             CCCceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeeeee
Q 034883            2 ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDF   75 (80)
Q Consensus         2 ~~~~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh~f   75 (80)
                      ..++||+|||+|+|||||||||+||||++||||||||||||||||++||||||||||||||+|+|||||||||=
T Consensus         9 ~~g~kv~fk~tltsdpklpfkv~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgs   82 (94)
T KOG3483|consen    9 KRGSKVSFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS   82 (94)
T ss_pred             cccceeEEEEEeccCCCCccceecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999983

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=96.28  E-value=0.011  Score=34.59  Aligned_cols=59  Identities=20%  Similarity=0.357  Sum_probs=46.7

Q ss_pred             EEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034883           10 KVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL   69 (80)
Q Consensus        10 kitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V   69 (80)
                      +|+|.+--..+++ ++|.+.+||..+++.-|++.++|+..+....=||-=+||++|....
T Consensus         2 ~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~   60 (72)
T PF11976_consen    2 TIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL   60 (72)
T ss_dssp             EEEEEETTSEEEE-EEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred             EEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence            4555555555544 5899999999999999999999997778888999999999997654

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd00196 UBQ Ubiquitin-like proteins

Probab=94.66  E-value=0.16  Score=24.85  Aligned_cols=46  Identities=13%  Similarity=0.207  Sum_probs=37.9

Q ss_pred             CCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcc
Q 034883           18 KLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQ   63 (80)
Q Consensus        18 klP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~   63 (80)
                      ......+.++...+...|++.+++++++++...++..+.+.--+..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~   51 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSL   51 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCC
Confidence            5667788889999999999999999999999888888766544433

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01612 APG12_C Ubiquitin-like domain of APG12

Probab=93.71  E-value=0.15  Score=33.07  Aligned_cols=69  Identities=25%  Similarity=0.472  Sum_probs=53.9

Q ss_pred             eEEEEEEecCC-CCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEE-ecCCcccCcccccceeEeeee
Q 034883            6 KVSFKVTLTSD-PKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAII-TNDGVGINPQQSAGILFISLD   74 (80)
Q Consensus         6 KvtFkitltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI-TndGiGINP~QtAG~VFlkh~   74 (80)
                      ||+.+..-++| |.+.-+...||++..|..+++|--.+.++++..|.-. -|+-.=-+|.|+-|++|=+|+
T Consensus         1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~   71 (87)
T cd01612           1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFG   71 (87)
T ss_pred             CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcC
Confidence            45555554444 7788899999999999999999999999998887444 555446678899999887663

APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.

>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function

Probab=92.08  E-value=0.17  Score=31.10  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=22.8

Q ss_pred             hhhhhhCCCCcceeEEecCCccc------------CcccccceeEeeeeeeee
Q 034883           38 FAAEEFKVPPQTSAIITNDGVGI------------NPQQSAGILFISLDFVSC   78 (80)
Q Consensus        38 faAEeFkv~~~TsAiITndGiGI------------NP~QtAG~VFlkh~f~~~   78 (80)
                      .-++.++++.+.--++|.||.=+            +....-.-|||-||...|
T Consensus         3 ~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~s   55 (63)
T PF04083_consen    3 ELIEKHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQS   55 (63)
T ss_dssp             HHHHHTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--
T ss_pred             HHHHHcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccC
Confidence            34688999999999999999732            223345569999998776

The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=90.92  E-value=0.96  Score=28.74  Aligned_cols=39  Identities=28%  Similarity=0.535  Sum_probs=31.7

Q ss_pred             CCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCccc
Q 034883           18 KLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI   60 (80)
Q Consensus        18 klP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGI   60 (80)
                      +.+-||+.+|++  +...|+-|+|+|+.+ + +-|.+.||-=|
T Consensus        16 ~~~GKvi~lP~S--leeLl~ia~~kfg~~-~-~~v~~~dgaeI   54 (69)
T PF11834_consen   16 RRAGKVIWLPDS--LEELLKIASEKFGFS-A-TKVLNEDGAEI   54 (69)
T ss_pred             CcCCEEEEcCcc--HHHHHHHHHHHhCCC-c-eEEEcCCCCEE
Confidence            356999999975  899999999999996 3 46678888544

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>cd01768 RA RA (Ras-associating) ubiquitin domain

Probab=90.18  E-value=0.85  Score=27.46  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=32.3

Q ss_pred             EEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCC
Q 034883           10 KVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVP   46 (80)
Q Consensus        10 kitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~   46 (80)
                      ||-..+.|+.+||.|.|+..+.-..|++=+++.|++.
T Consensus         3 kV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~   39 (87)
T cd01768           3 RVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLD   39 (87)
T ss_pred             EEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence            4444444789999999999999999999999999997

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.

>smart00314 RA Ras association (RalGDS/AF-6) domain

Probab=88.68  E-value=1.5  Score=26.65  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             EEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCC
Q 034883           10 KVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPP   47 (80)
Q Consensus        10 kitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~   47 (80)
                      ||-....+..+||.|.|+.++.-..|++=+++.|+++.
T Consensus         6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~   43 (90)
T smart00314        6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTD   43 (90)
T ss_pred             EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence            44444448899999999999999999999999999964

RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)

>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.49  E-value=1.3  Score=29.38  Aligned_cols=66  Identities=24%  Similarity=0.483  Sum_probs=40.7

Q ss_pred             eEEEEEEecC-CCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEE-ecCCcccCcccccceeEe
Q 034883            6 KVSFKVTLTS-DPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAII-TNDGVGINPQQSAGILFI   71 (80)
Q Consensus         6 KvtFkitlts-dpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI-TndGiGINP~QtAG~VFl   71 (80)
                      ||+.+..-+. -|-+-=++..|-.+-+|..|++|-..+.|+.+..|.-. -|.-.--+|.|+.|+.|-
T Consensus         1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~   68 (87)
T PF04110_consen    1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYR   68 (87)
T ss_dssp             EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHH
T ss_pred             CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHH
Confidence            4444444333 35555578889999999999999999999988777443 677889999999998763

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.

>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []

Probab=84.73  E-value=1.8  Score=25.43  Aligned_cols=28  Identities=21%  Similarity=0.386  Sum_probs=26.3

Q ss_pred             CCceeEEeeCCCCchhHHHHhhhhhhCC
Q 034883           18 KLPFKVFSVPEAAPFTAVLKFAAEEFKV   45 (80)
Q Consensus        18 klP~kvlsVPE~aPFtAVlkfaAEeFkv   45 (80)
                      +..||.+.|++.+.=..|++-+++.|++
T Consensus        15 ~~~~k~i~v~~~tTa~evi~~~l~k~~l   42 (93)
T PF00788_consen   15 GSTYKTIKVSSSTTAREVIEMALEKFGL   42 (93)
T ss_dssp             CCSEEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred             CccEEEEEECCCCCHHHHHHHHHHHhCC
Confidence            3469999999999999999999999999

This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=81.60  E-value=4.2  Score=23.90  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=35.2

Q ss_pred             EEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeE
Q 034883            7 VSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAI   52 (80)
Q Consensus         7 vtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAi   52 (80)
                      |.||+.+..|-..   .+.+|.+..|..+..-.++.|+.+...-.|
T Consensus         2 ~~vK~~~~~~~~~---~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l   44 (84)
T PF00564_consen    2 VRVKVRYGGDIRR---IISLPSDVSFDDLRSKIREKFGLLDEDFQL   44 (84)
T ss_dssp             EEEEEEETTEEEE---EEEECSTSHHHHHHHHHHHHHTTSTSSEEE
T ss_pred             EEEEEEECCeeEE---EEEcCCCCCHHHHHHHHHHHhCCCCccEEE
Confidence            6788888887654   699999999999999999999997444333

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=81.53  E-value=1  Score=31.18  Aligned_cols=44  Identities=27%  Similarity=0.345  Sum_probs=37.5

Q ss_pred             CCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeE
Q 034883           27 PEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF   70 (80)
Q Consensus        27 PE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF   70 (80)
                      +..-|--..+..++++++++|+.+..|=|...+|...+.||--.
T Consensus       148 ~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~aG~~~  191 (229)
T PRK13226        148 AERKPHPLPLLVAAERIGVAPTDCVYVGDDERDILAARAAGMPS  191 (229)
T ss_pred             CCCCCCHHHHHHHHHHhCCChhhEEEeCCCHHHHHHHHHCCCcE
Confidence            44567778899999999999999999999989999999988633

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=80.65  E-value=4.8  Score=26.58  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=29.5

Q ss_pred             eEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcc
Q 034883            6 KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQT   49 (80)
Q Consensus         6 KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~T   49 (80)
                      ||.|+-|.         ++.||...||..+..=.+|.+++|+..
T Consensus         6 KV~f~~tI---------aIrvp~~~~y~~L~~ki~~kLkl~~e~   40 (80)
T cd06406           6 KVHFKYTV---------AIQVARGLSYATLLQKISSKLELPAEH   40 (80)
T ss_pred             EEEEEEEE---------EEEcCCCCCHHHHHHHHHHHhCCCchh
Confidence            67776544         689999999999999999999998543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
1l7y_A	94	Solution Nmr Structure Of C. Elegans Protein Zk652.		6e-26
1j0g_A	92	Solution Structure Of Mouse Hypothetical 9.1 Kda Pr		1e-25
1wxs_A	90	Solution Structure Of Ufm1, A Ubiquitin-Fold Modifi		1e-25

>pdb|1L7Y|A Chain A, Solution Nmr Structure Of C. Elegans Protein Zk652.3. Northeast Structural Genomics Consortium Target Wr41 Length = 94

Iteration: 1
 Score =  112 bits (279), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%)
Query: 3  SGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 62
          +G KV+FK+TLTSDPKLPFKV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDGVG+NP
Sbjct: 10 AGSKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGVGVNP 69
Query: 63 QQSAGILFI 71
           Q AG +F+
Sbjct: 70 AQPAGNIFL 78

>pdb|1J0G|A Chain A, Solution Structure Of Mouse Hypothetical 9.1 Kda Protein, A Ubiquitin-Like Fold Length = 92

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 62/70 (88%)
Query: 2  ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61
          A+  KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GIN
Sbjct: 6  ATMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGIN 65
Query: 62 PQQSAGILFI 71
          P Q+AG +F+
Sbjct: 66 PAQTAGNVFL 75

>pdb|1WXS|A Chain A, Solution Structure Of Ufm1, A Ubiquitin-Fold Modifier Length = 90

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/71 (74%), Positives = 62/71 (87%)
Query: 1  MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 60
          + S  KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GI
Sbjct: 3  LGSMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGI 62
Query: 61 NPQQSAGILFI 71
          NP Q+AG +F+
Sbjct: 63 NPAQTAGNVFL 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
1j0g_A	92	Hypothetical protein 1810045K17; ubiquitin-like fo	1e-32

>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A Length = 92

 Score =  107 bits (268), Expect = 1e-32
 Identities = 53/70 (75%), Positives = 62/70 (88%)

Query: 2  ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61
          A+  KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GIN
Sbjct: 6  ATMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGIN 65

Query: 62 PQQSAGILFI 71
          P Q+AG +F+
Sbjct: 66 PAQTAGNVFL 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
1j0g_A	92	Hypothetical protein 1810045K17; ubiquitin-like fo	100.0
4gdk_A	91	Ubiquitin-like protein ATG12; protein-protein conj	94.81
1wz3_A	96	Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla	92.03
3w1s_C	91	Ubiquitin-like protein ATG12; ubiquitin fold, E3-l	89.37
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	88.55
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	86.25
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	83.62
2r2q_A	110	Gamma-aminobutyric acid receptor-associated protei	82.62
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	80.75
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	80.73
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	80.06

>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A

Probab=100.00  E-value=4.4e-55  Score=295.41  Aligned_cols=74  Identities=72%  Similarity=1.073  Sum_probs=71.8

Q ss_pred             CCCceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeeeee
Q 034883            2 ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDF   75 (80)
Q Consensus         2 ~~~~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh~f   75 (80)
                      ++++|||||||||||||||||||||||+||||||||||||||+|||+|||||||||+||||||||||||||||=
T Consensus         6 ~~~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGs   79 (92)
T 1j0g_A            6 ATMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS   79 (92)
T ss_dssp             CCSCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred             cCCceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999983

>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A

Probab=94.81  E-value=0.049  Score=34.73  Aligned_cols=72  Identities=19%  Similarity=0.344  Sum_probs=59.2

Q ss_pred             CCceEEEEEEecCC-CCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEe-cCCcccCcccccceeEeeee
Q 034883            3 SGGKVSFKVTLTSD-PKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIIT-NDGVGINPQQSAGILFISLD   74 (80)
Q Consensus         3 ~~~KvtFkitltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiIT-ndGiGINP~QtAG~VFlkh~   74 (80)
                      +..||+.+..-++| |.+-=+...||.+-.|..+++|--.+.+++++.+.-+- |+=.=-+|+++-|++|=.|+
T Consensus         2 ~~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k   75 (91)
T 4gdk_A            2 SKKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG   75 (91)
T ss_dssp             --CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC
T ss_pred             CCceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC
Confidence            56789888888766 89999999999999999999999999999998886654 44445688999999886653

>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7

Probab=92.03  E-value=0.18  Score=32.42  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=53.7

Q ss_pred             CceEEEEEEecCC-CCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeee
Q 034883            4 GGKVSFKVTLTSD-PKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISL   73 (80)
Q Consensus         4 ~~KvtFkitltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh   73 (80)
                      ..||+.++.-++| |.+.=+...||++-.|..+++|--.+.+++  .--+.-|+-.=-+|+|+-|++|=.|
T Consensus        11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~   79 (96)
T 1wz3_A           11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNF   79 (96)
T ss_dssp             -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHH
T ss_pred             CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHh
Confidence            3589988888877 778889999999999999999999999998  2233345446668889999887554

>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}

Probab=89.37  E-value=0.94  Score=28.91  Aligned_cols=69  Identities=20%  Similarity=0.305  Sum_probs=49.1

Q ss_pred             CCceEEEEEEecCC-CCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeee
Q 034883            3 SGGKVSFKVTLTSD-PKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISL   73 (80)
Q Consensus         3 ~~~KvtFkitltsd-pklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh   73 (80)
                      ...||+.+..-+.| |.+--+...||.+-.|..+++|--.+.++  +.--+--|+=.=-+|+++-|++|=.|
T Consensus         5 ~~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~f   74 (91)
T 3w1s_C            5 NIQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQF   74 (91)
T ss_dssp             -CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHH
T ss_pred             CCCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHh
Confidence            35688888777666 89999999999999999999999999999  22233345545678899999988655

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=88.55  E-value=1.3  Score=27.36  Aligned_cols=62  Identities=19%  Similarity=0.275  Sum_probs=45.7

Q ss_pred             CceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034883            4 GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL   69 (80)
Q Consensus         4 ~~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V   69 (80)
                      ..+++.|+.- .|-+ +. .+.|-..+||..+.+--||+.++++..--.+- ||-=|+|.+|....
T Consensus         3 ~~~i~ikVk~-~~g~-~v-~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F-dG~~l~~~~Tp~dl   64 (91)
T 2io0_B            3 NDHINLKVAG-QDGS-VV-QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQL   64 (91)
T ss_dssp             -CEEEEEEEC-TTSC-EE-EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE-TTEECCTTCCTTTT
T ss_pred             CCeEEEEEEC-CCCC-EE-EEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence            4566666652 3333 33 46678999999999999999999997655544 79999999998753

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=86.25  E-value=2.8  Score=26.67  Aligned_cols=63  Identities=11%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             ceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeE
Q 034883            5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILF   70 (80)
Q Consensus         5 ~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VF   70 (80)
                      .+++.|+.- .|-+. --.+.|-..+||..+.+.=||+.++++.+ .-..=||-=|+|.+|....=
T Consensus        24 ~~I~LkV~~-~dg~~-~v~fkIk~~t~l~kLm~aY~~~~g~~~~~-vrF~FDG~rI~~~~TP~dLd   86 (97)
T 2jxx_A           24 QQLQLRVQG-KEKHQ-TLEVSLSRDSPLKTLMSHYEEAMGLSGRK-LSFFFDGTKLSGRELPADLG   86 (97)
T ss_dssp             SEEEEEEEE-SSSSC-EEEEEEETTSCHHHHHHHHHHHTTCSSSC-CEEEETTEECCSCSCHHHHT
T ss_pred             CeEEEEEEc-CCCCE-EEEEEECCCChHHHHHHHHHHHHCCCccc-EEEEECCEEcCCCCCHHHcC
Confidence            445555432 23322 22466789999999999999999999875 44566899999999986543

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=83.62  E-value=2.2  Score=28.17  Aligned_cols=54  Identities=17%  Similarity=0.335  Sum_probs=44.3

Q ss_pred             CCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034883           15 SDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI   68 (80)
Q Consensus        15 sdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~   68 (80)
                      +|+.-.+-+-.+|...|=...+++++++++++++.+..|=|+...|.-.+.||.
T Consensus       195 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag~  248 (289)
T 3gyg_A          195 GDPEDSYDVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGN  248 (289)
T ss_dssp             TCCTTEEEEEEEESCCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSE
T ss_pred             cCCCCceEEEEEeCCCCHHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCCc
Confidence            444444666667888888899999999999999999999998888887777773

>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A

Probab=82.62  E-value=2.8  Score=26.89  Aligned_cols=69  Identities=12%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             ceEEEEEEecCCCCCce---eEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeee
Q 034883            5 GKVSFKVTLTSDPKLPF---KVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISL   73 (80)
Q Consensus         5 ~KvtFkitltsdpklP~---kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh   73 (80)
                      .+|-..|.-+...++|.   +-..||.+..+..++.+--.+.++++..+.-+-.+++=.+++++-|++|=+|
T Consensus        26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~   97 (110)
T 2r2q_A           26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN   97 (110)
T ss_dssp             TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH
T ss_pred             CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHc
Confidence            45555555554334554   7789999999999999999999999999866777777778889999998666

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.75  E-value=7.2  Score=26.24  Aligned_cols=48  Identities=13%  Similarity=0.081  Sum_probs=39.6

Q ss_pred             CceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEE
Q 034883            4 GGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAII   53 (80)
Q Consensus         4 ~~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiI   53 (80)
                      .+.+||||.++++. +=| .+++++++....+=.-.|++|++|+..--+|
T Consensus        13 ~~~itvkv~l~~~~-~k~-tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI   60 (118)
T 2daf_A           13 DSLATVKVVLIPVG-QEI-VIPFKVDTILKYLKDHFSHLLGIPHSVLQIR   60 (118)
T ss_dssp             SSCEEEEEEETTTC-CEE-EEEECSSSCSHHHHHHHHHHHTCCTTTEEEE
T ss_pred             CccEEEEEEEcCCC-cEE-EEEeCCCCcHHHHHHHHHhhhCCChHHEEEE
Confidence            46799999988763 334 6789999999999989999999999887666

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=80.73  E-value=3.2  Score=23.85  Aligned_cols=48  Identities=19%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             EEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEe
Q 034883           23 VFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI   71 (80)
Q Consensus        23 vlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl   71 (80)
                      .+.|-..+||..+.+--||+.++++..--.+- ||-=|+|.+|....=|
T Consensus        15 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l~m   62 (72)
T 1wm3_A           15 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF-DGQPINETDTPAQLEM   62 (72)
T ss_dssp             EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE-TTEECCTTCCTTTTTC
T ss_pred             EEEECCCChHHHHHHHHHHHhCCCcceEEEEE-CCEEcCCCCCHHHcCC
Confidence            45678899999999999999999987655544 7999999999876433

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=80.06  E-value=2.3  Score=27.77  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             CCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCccccc
Q 034883           18 KLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSA   66 (80)
Q Consensus        18 klP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtA   66 (80)
                      |.+==.++||-++++.-+++--+++.++++.++.-.-=||-=++|.||-
T Consensus        18 ~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp   66 (82)
T 3goe_A           18 KSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV   66 (82)
T ss_dssp             SSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh
Confidence            3444467899999999999999999999999887778899999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1j0ga_	92	d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mou	2e-39

>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: BM-002-like
domain: Hypothetical protein 1810045k17
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 2e-39
 Identities = 53/70 (75%), Positives = 62/70 (88%)

Query: 2  ASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61
          A+  KVSFK+TLTSDP+LP+KV SVPE+ PFTAVLKFAAEEFKVP  TSAIITNDG+GIN
Sbjct: 6  ATMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGIN 65

Query: 62 PQQSAGILFI 71
          P Q+AG +F+
Sbjct: 66 PAQTAGNVFL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1j0ga_	92	Hypothetical protein 1810045k17 {Mouse (Mus muscul	100.0
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	91.2
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	90.58
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	87.93
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	85.65
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	85.58
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	84.97
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	82.76
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	82.25
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	81.02

>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: BM-002-like
domain: Hypothetical protein 1810045k17
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-55  Score=293.63  Aligned_cols=75  Identities=71%  Similarity=1.055  Sum_probs=72.9

Q ss_pred             CCCCceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeeeee
Q 034883            1 MASGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISLDF   75 (80)
Q Consensus         1 ~~~~~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh~f   75 (80)
                      +++++|||||||||||||||||||||||++||||||||||||||||++|||||||||+||||+|||||||||||=
T Consensus         5 ~~~~~kvtfkitltSdp~lpfkvlsVpE~aPftAVlkfaAEeFkV~~~TSAiITndGvGINP~QtAg~vFlKhGs   79 (92)
T d1j0ga_           5 AATMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS   79 (92)
T ss_dssp             SCCSCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred             ccccceEEEEEEEccCCCCccEEEecCccCchHHHHHHHHHHcCCCccceeEEecCccccChhhccchhhhhcCc
Confidence            367999999999999999999999999999999999999999999999999999999999999999999999983

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=91.20  E-value=0.027  Score=33.40  Aligned_cols=50  Identities=20%  Similarity=0.405  Sum_probs=42.8

Q ss_pred             eCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccc--eeEeeeee
Q 034883           26 VPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG--ILFISLDF   75 (80)
Q Consensus        26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG--~VFlkh~f   75 (80)
                      ++...|-.+..+.++++++++++.+..|-|.-.+|-.++.+|  .|++.+|+
T Consensus       147 ~~~~kp~p~~~~~~~~~~~~~~~~~~~igD~~~Di~~A~~aG~~~i~v~~g~  198 (224)
T d2hsza1         147 LPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGY  198 (224)
T ss_dssp             SSSCTTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSC
T ss_pred             cccccccchhhHHHHHHhhhhhhccchhcCcHHHHHHHHHcCCeEEEEeCCC
Confidence            445568888999999999999999999999999999999999  57777665

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.57  Score=26.15  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=44.2

Q ss_pred             EEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEe
Q 034883           11 VTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFI   71 (80)
Q Consensus        11 itltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFl   71 (80)
                      |.+.+.-..-+. +.|..++||..+.+.-|++.++++..--. +=||-=|++.+|....=|
T Consensus         5 ikv~~~dg~~v~-f~v~~~t~l~kl~~~y~~~~~~~~~~~~f-~fdG~~l~~~~T~~~l~~   63 (77)
T d2uyzb1           5 LKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRF-LFEGQRIADNHTPKELGM   63 (77)
T ss_dssp             EEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEE-EETTEECCTTCCHHHHTC
T ss_pred             EEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCChhHEEE-EECCEECCCCCCHHHcCC
Confidence            333343344443 77899999999999999999998876554 578999999999765433

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=87.93  E-value=0.43  Score=26.72  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             ceEEEEEEecCCCCCceeEEeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEeee
Q 034883            5 GKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFISL   73 (80)
Q Consensus         5 ~KvtFkitltsdpklP~kvlsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlkh   73 (80)
                      .+++.|+.  ++ ..-.. +.|...+|+.-+.+.-||+.++++..- .++=||-=|++.+|....=|+.
T Consensus         3 ~~I~ikv~--~~-~~~~~-f~v~~~~~~~~l~~~~~~~~~i~~~~~-~l~f~G~~l~~~~T~~~~~i~d   66 (79)
T d1euvb_           3 THINLKVS--DG-SSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSL-RFLYDGIRIQADQTPEDLDMED   66 (79)
T ss_dssp             SEEEEEEE--SS-SCEEE-EEEETTSCTHHHHHHHHHHTTCCGGGE-EEEETTEECCTTCCTTTTTCCT
T ss_pred             cEEEEEEC--CC-CeEEE-EEECCCCcHHHHHHHHHHHhCCChHhE-EEEECCEEeCCCCCHHHCCCCC
Confidence            34565653  33 33343 789999999999999999999998774 4456999999999987654443

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.65  E-value=0.095  Score=30.63  Aligned_cols=43  Identities=7%  Similarity=0.094  Sum_probs=37.9

Q ss_pred             CchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccc--eeEee
Q 034883           30 APFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAG--ILFIS   72 (80)
Q Consensus        30 aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG--~VFlk   72 (80)
                      -|-......|+++++++|+.+..|-|...+|.+++.||  .|++.
T Consensus       159 KP~p~~f~~~~~~lg~~p~e~l~VgD~~~Dv~~A~~aG~~ti~v~  203 (225)
T d2g80a1         159 KTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLAS  203 (225)
T ss_dssp             TTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEEEC
T ss_pred             CCChhHhHHHHHhcccCchhceeecCCHHHHHHHHHcCCEEEEEe
Confidence            47777889999999999999999999999999999999  56654

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.58  E-value=1.6  Score=24.15  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=40.7

Q ss_pred             EeeCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccceeEee
Q 034883           24 FSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGILFIS   72 (80)
Q Consensus        24 lsVPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~VFlk   72 (80)
                      +.|-..+||.-+++.-|++.++++.. ...+=||-=|+|.+|....=|+
T Consensus        16 f~vk~~t~l~kl~~~y~~~~~~~~~~-~~f~fdG~~i~~~~Tp~~l~me   63 (72)
T d1wm3a_          16 FKIKRHTPLSKLMKAYCERQGLSMRQ-IRFRFDGQPINETDTPAQLEME   63 (72)
T ss_dssp             EEECTTSCTHHHHHHHHHHHTCCTTT-CEEEETTEECCTTCCTTTTTCC
T ss_pred             EEEcCCChHHHHHHHHHHHhCCCccc-eEEEECCEEcCCCCCHHHcCCC
Confidence            78899999999999999999999877 5556889999999998764333

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=84.97  E-value=0.083  Score=31.29  Aligned_cols=45  Identities=11%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             CCCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccce--eEee
Q 034883           28 EAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI--LFIS   72 (80)
Q Consensus        28 E~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~--VFlk   72 (80)
                      ..-|-....+.|+|+.+++|+.+..|-|+-..|.+++.||-  |+++
T Consensus       147 ~~KP~p~~~~~~~~~~g~~p~e~l~VgD~~~Di~~A~~aG~~~v~v~  193 (220)
T d1zrna_         147 VYKPDNRVYELAEQALGLDRSAILFVASNAWDATGARYFGFPTCWIN  193 (220)
T ss_dssp             CCTTSHHHHHHHHHHHTSCGGGEEEEESCHHHHHHHHHHTCCEEEEC
T ss_pred             ccccHHHHHHHHHHHhCCCCceEEEEecChHhHHHHHHcCCEEEEEc
Confidence            34588899999999999999999999999899999999984  5443

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.76  E-value=0.26  Score=28.93  Aligned_cols=40  Identities=18%  Similarity=0.454  Sum_probs=35.7

Q ss_pred             CCchhHHHHhhhhhhCCCCcceeEEecCCcccCcccccce
Q 034883           29 AAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGI   68 (80)
Q Consensus        29 ~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~   68 (80)
                      .-|--...+.++++++++|..+..|-|...+|...+.+|-
T Consensus       156 ~KP~p~~~~~~~~~~~v~p~~~l~IgD~~~Di~~A~~aG~  195 (222)
T d1cr6a1         156 IKPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGM  195 (222)
T ss_dssp             CTTCHHHHHHHHHHHTSCTTSEEEEESSSTTTHHHHHHTC
T ss_pred             CCCChHHHHHHHHHhCCCcceEEEEECCHHHHHHHHHcCC
Confidence            3477788889999999999999999999999999999994

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=82.25  E-value=0.16  Score=30.13  Aligned_cols=44  Identities=20%  Similarity=0.291  Sum_probs=37.9

Q ss_pred             eCCCCchhHHHHhhhhhhCCCCcceeEEecCCcccCccccccee
Q 034883           26 VPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGIL   69 (80)
Q Consensus        26 VPE~aPFtAVlkfaAEeFkv~~~TsAiITndGiGINP~QtAG~V   69 (80)
                      ++..-|-...++.++++++++|+.+..|=|.=.+|..++.+|--
T Consensus       140 ~~~~Kp~~~~~~~~~~~l~~~~~~~l~igD~~~di~aA~~~G~~  183 (218)
T d1te2a_         140 LPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMR  183 (218)
T ss_dssp             SSCCTTSTHHHHHHHHHHTSCGGGEEEEESSHHHHHHHHHTTCE
T ss_pred             cccchhhHHHHHHHHHHcCCCchhcEEEeeCHHHHHHHHHcCCE
Confidence            45566888899999999999999999998888889999988853

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=81.02  E-value=0.28  Score=30.82  Aligned_cols=48  Identities=13%  Similarity=0.241  Sum_probs=38.3

Q ss_pred             CCCchhHHHHhhhhhhCCCCcceeEEecC-CcccCcccccc--eeEeeeee
Q 034883           28 EAAPFTAVLKFAAEEFKVPPQTSAIITND-GVGINPQQSAG--ILFISLDF   75 (80)
Q Consensus        28 E~aPFtAVlkfaAEeFkv~~~TsAiITnd-GiGINP~QtAG--~VFlkh~f   75 (80)
                      ..-|-...+++|+|+++++|+.+..|-|+ -.=|-..+.||  .|++..|.
T Consensus       174 ~~KP~p~~~~~a~~~lgi~p~e~v~IGD~~~~DI~~a~~aG~~tilV~~G~  224 (250)
T d2c4na1         174 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGV  224 (250)
T ss_dssp             CSTTSTHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEESSSS
T ss_pred             cccchhhhHhhhhhhhcCCchheEEecCChHHHHHHHHHCCCCEEEECCCC
Confidence            34677789999999999999999999776 34577888888  67776664