BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034889
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DG43|UBTD2_DANRE Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2
SV=1
Length = 240
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA+A D LAQAI+D A + + LT CYDE
Sbjct: 54 RDEFWDTAPAFEGRK-EIWDALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDEL 112
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y LS P N+I E
Sbjct: 113 GNRYQLPVYCLSPPVNMIEE 132
>sp|Q4V8W7|UBTD1_DANRE Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2
SV=1
Length = 227
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAIVD A + + LT CYDE
Sbjct: 52 RDEFWDTAPAFEGRK-EIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDEL 110
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y L+ P NLI E
Sbjct: 111 GNRYQLPVYCLAPPVNLISE 130
>sp|Q8WUN7|UBTD2_HUMAN Ubiquitin domain-containing protein 2 OS=Homo sapiens GN=UBTD2 PE=1
SV=2
Length = 234
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + LT CYDE
Sbjct: 54 RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132
>sp|Q5EAE3|UBTD2_BOVIN Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2
SV=1
Length = 234
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + LT CYDE
Sbjct: 54 RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132
>sp|Q6PGH0|UBTD2_MOUSE Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2
SV=1
Length = 234
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + LT CYDE
Sbjct: 54 RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDEL 112
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132
>sp|Q6GL38|UBTD1_XENTR Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis
GN=ubtd1 PE=2 SV=1
Length = 240
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAIVD A + + LT CYDE
Sbjct: 55 RDEFWDTAPAFEGRK-EIWDALKAAAFAVEANDHELAQAIVDGASITLPHGSLTECYDEL 113
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y L+ P NLI E
Sbjct: 114 GTRYQLPVYCLAPPVNLIME 133
>sp|Q640W6|UBTD1_XENLA Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1
PE=2 SV=1
Length = 234
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + LT CYDE
Sbjct: 54 RDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDEL 112
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y L+ P N+I E
Sbjct: 113 GNRYQLPVYCLAPPINMIEE 132
>sp|Q3ZBQ1|UBTD1_BOVIN Ubiquitin domain-containing protein 1 OS=Bos taurus GN=UBTD1 PE=2
SV=1
Length = 227
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + L CYDE
Sbjct: 51 RDEFWDTAPAFEGRK-EIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDEL 109
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y LS P NL+ E
Sbjct: 110 GNRYQLPIYCLSPPVNLLLE 129
>sp|Q68FV8|UBTD1_RAT Ubiquitin domain-containing protein 1 OS=Rattus norvegicus GN=Ubtd1
PE=2 SV=1
Length = 227
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + L CYDE
Sbjct: 51 RDEFWDTAPAFEGRK-EIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDEL 109
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y LS P NL+ E
Sbjct: 110 GNRYQLPIYCLSPPVNLLLE 129
>sp|Q91WB7|UBTD1_MOUSE Ubiquitin domain-containing protein 1 OS=Mus musculus GN=Ubtd1 PE=2
SV=1
Length = 227
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + L CYDE
Sbjct: 51 RDEFWDTAPAFEGRK-EIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDEL 109
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y LS P NL+ E
Sbjct: 110 GNRYQLPIYCLSPPVNLLLE 129
>sp|Q9HAC8|UBTD1_HUMAN Ubiquitin domain-containing protein 1 OS=Homo sapiens GN=UBTD1 PE=1
SV=1
Length = 227
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDER 59
RDEFWDTAP + GRK +IWDAL+AAA A D LAQAI+D A + + L CYDE
Sbjct: 51 RDEFWDTAPAFEGRK-EIWDALKAAAYAAEANDHELAQAILDGASITLPHGTLCECYDEL 109
Query: 60 GAKYELPKYVLSEPTNLIRE 79
G +Y+LP Y LS P NL+ E
Sbjct: 110 GNRYQLPIYCLSPPVNLLLE 129
>sp|Q9HDW4|YFW7_SCHPO Uncharacterized protein PB2B4.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAPB2B4.07 PE=1 SV=1
Length = 239
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 4 RDEFWDTAPHYGGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTI--------C 55
R+EFW+T YGG K +IWD L L + ++A + +ADLTI
Sbjct: 48 RNEFWETCWAYGGSK-EIWDVLHKVVTL---LYEGNAEAATEMALAADLTIPENDISKGV 103
Query: 56 YDERGAKYELPKYVLSEP 73
YD +G YE+PK V P
Sbjct: 104 YDSKGTFYEIPKIVARIP 121
>sp|C6DG46|FADR_PECCP Fatty acid metabolism regulator protein OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=fadR PE=3
SV=1
Length = 239
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 2 QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLS 34
+L D+ D HYG G IW ++++A D++
Sbjct: 203 ELYDQVMDVVRHYGKESGAIWHSMQSAIPRDIA 235
>sp|Q6D4N0|FADR_ERWCT Fatty acid metabolism regulator protein OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=fadR PE=3 SV=1
Length = 239
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 2 QLRDEFWDTAPHYGGRKGKIWDALRAAAEADLS 34
+L D+ D HYG G IW ++++A D++
Sbjct: 203 ELYDQVMDVVRHYGKESGAIWHSMQSAIPRDIA 235
>sp|P45420|YHCD_ECOLI Uncharacterized outer membrane usher protein YhcD OS=Escherichia
coli (strain K12) GN=yhcD PE=3 SV=1
Length = 793
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 15 GGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPT 74
G +KG I A R D+ L QA + AG+ + S + CYD Y+LS P
Sbjct: 68 GEKKGNI--ATRFDENGDICLDQAFLQQAGLKIPSEEKNGCYD----------YILSYPG 115
Query: 75 NLI 77
I
Sbjct: 116 TTI 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,222,440
Number of Sequences: 539616
Number of extensions: 875735
Number of successful extensions: 2614
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2576
Number of HSP's gapped (non-prelim): 18
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)