Query 034889
Match_columns 80
No_of_seqs 90 out of 108
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksn_A Ubiquitin domain-contai 100.0 1E-46 3.5E-51 265.0 7.1 77 2-79 40-120 (137)
2 3kol_A Oxidoreductase, glyoxal 62.6 8.1 0.00028 22.9 3.3 34 32-65 108-148 (156)
3 4g6x_A Glyoxalase/bleomycin re 57.9 10 0.00034 23.5 3.2 34 32-65 108-148 (155)
4 3jz0_A Lincosamide nucleotidyl 52.2 10 0.00035 28.1 2.9 36 15-50 241-276 (287)
5 3l7t_A SMU.1112C, putative unc 52.2 16 0.00054 20.8 3.2 33 32-64 91-131 (134)
6 3r6a_A Uncharacterized protein 48.3 14 0.00049 23.0 2.8 34 32-65 75-115 (144)
7 3u5c_S 40S ribosomal protein S 47.5 4.1 0.00014 28.1 0.1 44 32-75 39-91 (146)
8 3nze_A Putative transcriptiona 45.6 10 0.00035 27.1 2.0 23 22-44 236-266 (267)
9 2pbe_A AAD6, aminoglycoside 6- 42.8 24 0.00081 25.8 3.6 34 16-49 236-269 (294)
10 3pvt_A Phenylacetic acid degra 41.9 19 0.00064 27.2 3.0 31 33-65 228-258 (311)
11 3lvu_A ABC transporter, peripl 41.9 32 0.0011 23.0 3.9 37 30-69 98-134 (258)
12 3f6q_A Integrin-linked protein 41.7 11 0.00037 23.3 1.4 29 16-45 1-30 (179)
13 3bqx_A Glyoxalase-related enzy 41.1 44 0.0015 20.2 4.2 46 31-76 81-137 (150)
14 3r4q_A Lactoylglutathione lyas 40.9 22 0.00077 22.0 2.8 35 31-65 88-129 (160)
15 1nki_A Probable fosfomycin res 39.9 34 0.0012 20.1 3.4 35 31-65 72-111 (135)
16 1f75_A Undecaprenyl pyrophosph 39.1 13 0.00044 27.2 1.6 18 12-30 146-163 (249)
17 1vdl_A Ubiquitin carboxyl-term 38.8 36 0.0012 21.7 3.5 29 23-51 41-72 (80)
18 2y8d_A Erythrocyte membrane pr 37.9 8.1 0.00028 29.0 0.4 22 2-29 134-155 (306)
19 2wau_A VAR2CSA, erythrocyte me 37.3 8.4 0.00029 28.8 0.4 22 2-29 129-150 (302)
20 3j20_O 30S ribosomal protein S 36.8 5.3 0.00018 27.6 -0.7 59 14-73 15-82 (148)
21 3pam_A Transmembrane protein; 36.1 36 0.0012 22.8 3.4 33 30-65 99-131 (259)
22 3qas_B Undecaprenyl pyrophosph 35.9 17 0.00057 26.8 1.8 40 12-54 143-193 (253)
23 3kv1_A Transcriptional repress 35.0 29 0.001 24.7 3.0 22 22-43 234-263 (267)
24 2xu0_A Erythrocyte membrane pr 34.8 9.6 0.00033 30.6 0.4 22 2-29 251-272 (487)
25 1wzd_A Heme oxygenase; electro 34.6 57 0.002 22.3 4.3 38 6-45 159-199 (215)
26 3v0s_A Perakine reductase; AKR 34.4 9.5 0.00033 27.6 0.3 13 6-18 49-63 (337)
27 4hc5_A Glyoxalase/bleomycin re 33.8 43 0.0015 19.0 3.1 33 32-64 89-129 (133)
28 3iz6_M 40S ribosomal protein S 33.0 7.1 0.00024 27.0 -0.6 60 14-74 20-88 (152)
29 2con_A RUH-035 protein, NIN on 32.6 14 0.00049 23.1 0.9 14 55-68 64-77 (79)
30 3kj0_B BCL-2-like protein 11; 32.3 17 0.00059 18.9 1.0 9 15-24 3-11 (27)
31 1pyf_A IOLS protein; beta-alph 31.2 11 0.00039 26.7 0.3 10 6-15 50-59 (312)
32 3sgv_B Undecaprenyl pyrophosph 31.0 22 0.00077 26.3 1.8 18 12-30 143-160 (253)
33 1sk7_A Hypothetical protein PA 30.8 68 0.0023 21.7 4.2 30 15-45 152-184 (198)
34 3huh_A Virulence protein STM31 30.3 50 0.0017 19.7 3.1 35 31-65 95-140 (152)
35 3bqk_A Pfemp1 protein, erythro 30.2 17 0.00058 27.9 1.1 23 2-30 182-204 (360)
36 2pjs_A AGR_C_3564P, uncharacte 30.1 46 0.0016 18.8 2.8 33 32-64 74-114 (119)
37 1ynp_A Oxidoreductase, AKR11C1 30.1 13 0.00045 26.8 0.4 13 6-18 63-76 (317)
38 2d2r_A Undecaprenyl pyrophosph 29.7 22 0.00076 25.9 1.6 18 12-30 141-158 (245)
39 3rri_A Glyoxalase/bleomycin re 29.7 49 0.0017 19.2 2.9 35 31-65 79-125 (135)
40 1npb_A Fosfomycin-resistance p 29.5 52 0.0018 19.4 3.1 35 31-65 75-114 (141)
41 3ey7_A Biphenyl-2,3-DIOL 1,2-d 29.4 40 0.0014 19.2 2.5 34 32-65 83-127 (133)
42 3rmu_A Methylmalonyl-COA epime 29.4 55 0.0019 18.4 3.0 18 32-49 87-104 (134)
43 3qqz_A Putative uncharacterize 29.4 23 0.00078 25.3 1.6 17 54-76 229-245 (255)
44 2p25_A Glyoxalase family prote 29.3 57 0.0019 18.2 3.1 17 32-48 83-99 (126)
45 3ouv_A Serine/threonine protei 29.3 32 0.0011 19.4 1.9 17 32-48 17-33 (71)
46 1p2x_A RNG2 protein, RAS GTPas 29.3 29 0.001 23.3 2.0 18 32-49 138-155 (159)
47 3rrc_A Duffy receptor; duffy b 29.1 14 0.00047 28.3 0.4 22 2-29 136-157 (317)
48 2rk0_A Glyoxalase/bleomycin re 28.6 37 0.0013 19.9 2.2 34 31-64 84-123 (136)
49 2a4x_A Mitomycin-binding prote 28.3 60 0.0021 19.1 3.2 34 32-65 84-125 (138)
50 3eau_A Voltage-gated potassium 28.0 9.4 0.00032 27.3 -0.7 13 6-18 48-61 (327)
51 3n6q_A YGHZ aldo-keto reductas 27.8 14 0.00048 26.7 0.3 10 6-15 58-67 (346)
52 2i7r_A Conserved domain protei 27.7 41 0.0014 19.1 2.3 16 32-47 73-88 (118)
53 2p7o_A Glyoxalase family prote 27.6 71 0.0024 18.3 3.4 35 31-65 77-119 (133)
54 3rhe_A NAD-dependent benzaldeh 27.4 41 0.0014 20.7 2.4 34 32-65 80-120 (148)
55 2vg3_A Undecaprenyl pyrophosph 27.4 33 0.0011 25.7 2.2 39 13-54 182-231 (284)
56 4h8e_A Undecaprenyl pyrophosph 27.4 26 0.00088 26.0 1.6 17 13-30 151-167 (256)
57 3uh9_A Metallothiol transferas 27.3 70 0.0024 18.9 3.4 35 31-65 74-116 (145)
58 3ghj_A Putative integron gene 27.2 50 0.0017 19.9 2.7 34 31-64 96-137 (141)
59 3g12_A Putative lactoylglutath 26.8 47 0.0016 19.8 2.5 34 32-65 76-117 (128)
60 2dii_A TFIIH basal transcripti 26.8 11 0.00036 22.9 -0.5 8 5-12 45-52 (61)
61 2gnp_A Transcriptional regulat 26.8 38 0.0013 23.9 2.4 21 23-43 235-263 (266)
62 2c21_A Trypanothione-dependent 26.5 87 0.003 18.5 3.7 34 32-65 87-124 (144)
63 1ur3_M Hypothetical oxidoreduc 25.9 18 0.00063 26.1 0.6 10 6-15 68-77 (319)
64 1j77_A HEMO, heme oxygenase; p 25.9 92 0.0031 21.4 4.2 30 16-46 148-180 (209)
65 2vg0_A Short-chain Z-isoprenyl 25.9 40 0.0014 24.1 2.4 17 13-30 128-144 (227)
66 1r9c_A Glutathione transferase 25.8 78 0.0027 18.6 3.4 34 32-65 78-119 (139)
67 3efb_A Probable SOR-operon reg 25.6 40 0.0014 23.8 2.3 19 23-41 240-266 (266)
68 1pz1_A GSP69, general stress p 24.9 14 0.00049 26.6 -0.1 13 6-18 49-62 (333)
69 2qqz_A Glyoxalase family prote 24.6 69 0.0024 18.4 2.9 33 32-64 82-120 (126)
70 3vuu_A Erythrocyte membrane pr 24.5 18 0.0006 27.2 0.3 23 2-30 149-171 (305)
71 2za0_A Glyoxalase I; lyase, la 24.3 83 0.0029 19.6 3.5 34 32-65 134-174 (184)
72 3zw5_A Glyoxalase domain-conta 24.2 50 0.0017 19.9 2.3 35 31-65 99-144 (147)
73 3erp_A Putative oxidoreductase 23.9 18 0.00063 26.3 0.3 10 6-15 79-88 (353)
74 1gve_A Aflatoxin B1 aldehyde r 23.8 16 0.00053 26.2 -0.1 9 7-15 38-46 (327)
75 3oa4_A Glyoxalase, BH1468 prot 23.7 81 0.0028 19.3 3.3 34 32-65 89-133 (161)
76 1we1_A Heme oxygenase 1; oxido 23.5 1.2E+02 0.0041 21.3 4.5 38 6-45 154-194 (240)
77 2hfv_A Hypothetical protein RP 23.5 41 0.0014 21.6 1.8 16 31-46 75-90 (97)
78 3vuv_A Erythrocyte membrane pr 23.4 19 0.00065 27.5 0.3 23 2-30 183-205 (339)
79 3k0b_A Predicted N6-adenine-sp 23.4 1.5E+02 0.005 22.1 5.2 52 17-74 243-316 (393)
80 3ct8_A Protein BH2160, putativ 23.3 85 0.0029 19.0 3.3 33 32-64 99-142 (146)
81 1jc4_A Methylmalonyl-COA epime 22.8 1.2E+02 0.004 17.5 4.1 17 32-48 98-114 (148)
82 3vw9_A Lactoylglutathione lyas 22.8 98 0.0033 19.1 3.5 33 32-64 137-176 (187)
83 2rbb_A Glyoxalase/bleomycin re 22.7 94 0.0032 18.3 3.3 34 32-65 88-129 (141)
84 2r6u_A Uncharacterized protein 22.5 80 0.0027 19.3 3.1 35 31-65 99-141 (148)
85 3ldg_A Putative uncharacterize 22.4 1.6E+02 0.0053 22.0 5.1 52 17-74 236-309 (384)
86 1n08_A Putative riboflavin kin 22.3 60 0.0021 22.2 2.6 23 22-44 129-151 (163)
87 4gie_A Prostaglandin F synthas 21.7 35 0.0012 24.2 1.4 21 6-27 53-73 (290)
88 3m2o_A Glyoxalase/bleomycin re 21.4 78 0.0027 19.6 2.8 34 32-65 100-141 (164)
89 2kjz_A ATC0852; protein of unk 21.2 52 0.0018 20.0 1.9 33 32-64 99-138 (144)
90 1wi9_A Protein C20ORF116 homol 21.1 35 0.0012 21.1 1.1 16 48-63 47-62 (72)
91 1pq1_B BCL2-like protein 11; B 20.8 34 0.0012 18.5 0.9 7 17-24 3-9 (33)
92 1nb0_A Hypothetical protein FL 20.1 57 0.002 21.9 2.1 22 22-43 111-132 (147)
93 1zro_A Erythrocyte binding ant 20.1 26 0.00088 28.8 0.4 21 2-28 138-158 (602)
No 1
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=265.03 Aligned_cols=77 Identities=58% Similarity=1.020 Sum_probs=74.6
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHHHh----cHHHHHHHHHHcCceeecCCeeeeeccCCCccccCceeeeCCCCcc
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAAEA----DLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 77 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~e~----dl~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~v~s~P~Nl~ 77 (80)
+||+|||||||+||||+ |||+|||+||++ |++|||+|||+||||||+|||+.|||++|++|+||+||+|+|+||+
T Consensus 40 ~~R~EFWDT~p~~~Gr~-EIW~ALraA~~~~e~~Dl~tAQ~IldaAgItvp~gdL~~cYDe~G~~Y~LP~yvls~P~Nl~ 118 (137)
T 2ksn_A 40 SKRDEFWDTAPAFEGRK-EIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 118 (137)
T ss_dssp HHHHHHHTTSSTTCCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHSCBCSSCCSSEEEETTTEEEECCGGGTCCSTTTC
T ss_pred HHHHHHHhcCCccCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHHcCCcccCCcHHHHHhccCCccCCCeeEeeCCcccc
Confidence 79999999999999999 999999999963 9999999999999999999999999999999999999999999999
Q ss_pred cC
Q 034889 78 RE 79 (80)
Q Consensus 78 ~~ 79 (80)
++
T Consensus 119 ~~ 120 (137)
T 2ksn_A 119 EE 120 (137)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 2
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=62.62 E-value=8.1 Score=22.94 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHcCceee-------cCCeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQ-------SADLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp-------~g~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++- .|...-+.|-.||..+|
T Consensus 108 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdG~~iel 148 (156)
T 3kol_A 108 LFDRAVTVIGENKIAIAHGPVTRPTGRGVYFYDPDGFMIEI 148 (156)
T ss_dssp GHHHHHHHHHHTTCCEEEEEEEC-CCEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHCCCccccCceecCCccEEEEECCCCCEEEE
Confidence 89999999999999873 34444677888887773
No 3
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=57.93 E-value=10 Score=23.48 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHcCceee-------cCCeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQ-------SADLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp-------~g~L~~~YDe~G~~Y~l 65 (80)
|++.+.+-|.++|+++. .|....+.|-.||..+|
T Consensus 108 Dvda~~~~l~~~Gv~~~~~p~~~~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 108 DIAAEYERLSALGVRFTQEPTDMGPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEECSSCEEEEEECSSSCEEEE
T ss_pred hhhhhhhHHhcCCcEEeeCCEEcCCeEEEEEECCCCCEEEE
Confidence 88999999999999873 34444566777776554
No 4
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=52.21 E-value=10 Score=28.15 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=30.0
Q ss_pred CCchhhHHHHHHHHHHhcHHHHHHHHHHcCceeecC
Q 034889 15 GGRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQSA 50 (80)
Q Consensus 15 ~Gr~~EIW~aLraA~e~dl~tAq~ildaA~itlp~g 50 (80)
.+...+||+||.++++-=.++|+.+-+..|.+.|..
T Consensus 241 ~~~~~~iw~Al~~~~~LF~~la~~va~~~g~~yp~~ 276 (287)
T 3jz0_A 241 RLDKVELFEAYKNSLLLVMDLQSHLIEQYNLKVTHD 276 (287)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344459999999999988899999988888888764
No 5
>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}
Probab=52.15 E-value=16 Score=20.76 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHcCceeec-------CCe-eeeeccCCCccc
Q 034889 32 DLSLAQAIVDSAGVIVQS-------ADL-TICYDERGAKYE 64 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~-------g~L-~~~YDe~G~~Y~ 64 (80)
|++.+..-|.++|+++-. |.- .-+.|-.|+...
T Consensus 91 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie 131 (134)
T 3l7t_A 91 DVEASRQELIALGIRVEEVRYDDYTGKKMAFFFDPDGLPLE 131 (134)
T ss_dssp CHHHHHHHHHHHTCCCCCCEECTTSCCEEEEEECTTCCEEE
T ss_pred CHHHHHHHHHhCCCcccceeccCCCceEEEEEECCCCCEEE
Confidence 888888999999998732 211 245666666554
No 6
>3r6a_A Uncharacterized protein; PSI biology, structural genomics, NEW YORK structural genomi research consortium, putative glyoxalase I; 1.76A {Methanosarcina mazei}
Probab=48.28 E-value=14 Score=22.96 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHcCceee-------cCCeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQ-------SADLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp-------~g~L~~~YDe~G~~Y~l 65 (80)
|++.+.+-|.++|+++- .|...-+.|-.||..+|
T Consensus 75 d~d~~~~~l~~~G~~v~~~p~~~~~G~~~~~~DPdG~~iel 115 (144)
T 3r6a_A 75 SLDKFKTFLEENGAEIIRGPSKVPTGRNMTVRHSDGSVIEY 115 (144)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHcCCEEecCCccCCCceEEEEECCCCCEEEE
Confidence 88999999999999873 23233677888887775
No 7
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=47.51 E-value=4.1 Score=28.07 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHcCc--eeecCCee-----eeeccCCC--ccccCceeeeCCCC
Q 034889 32 DLSLAQAIVDSAGV--IVQSADLT-----ICYDERGA--KYELPKYVLSEPTN 75 (80)
Q Consensus 32 dl~tAq~ildaA~i--tlp~g~L~-----~~YDe~G~--~Y~lP~~v~s~P~N 75 (80)
-..+|+.|+..||| ..--|+|+ -.-+...+ .|.+|.|.++-.-.
T Consensus 39 G~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR~kD 91 (146)
T 3u5c_S 39 GRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNRQND 91 (146)
T ss_dssp CHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCSTTCTBCSC
T ss_pred CHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccHHHhhhhhc
Confidence 67899999999999 46778886 23344444 69999999875433
No 8
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=45.60 E-value=10 Score=27.06 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=17.2
Q ss_pred HHHHHHHHHh--------cHHHHHHHHHHcC
Q 034889 22 WDALRAAAEA--------DLSLAQAIVDSAG 44 (80)
Q Consensus 22 W~aLraA~e~--------dl~tAq~ildaA~ 44 (80)
=.||++|++. |..||+.||+..|
T Consensus 236 a~Ai~aal~g~~~~~LITDe~tA~~lL~~~~ 266 (267)
T 3nze_A 236 INGLQGALAAGLATDLILDEASARRLVSFNG 266 (267)
T ss_dssp HHHHHHHHHTTCCSEEEEEHHHHHHHTC---
T ss_pred HHHHHHHHhcCCCCEEEeCHHHHHHHHhhcC
Confidence 3688889884 9999999997654
No 9
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=42.79 E-value=24 Score=25.81 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=28.3
Q ss_pred CchhhHHHHHHHHHHhcHHHHHHHHHHcCceeec
Q 034889 16 GRKGKIWDALRAAAEADLSLAQAIVDSAGVIVQS 49 (80)
Q Consensus 16 Gr~~EIW~aLraA~e~dl~tAq~ildaA~itlp~ 49 (80)
+...+||+||.++++-=..+|+.+-...|+..|.
T Consensus 236 ~~~~~i~~al~~~~~LF~~~a~~va~~~~~~y~~ 269 (294)
T 2pbe_A 236 NGYQEMWKSLFTCYALFRKYSKAVSEGLAYKYPD 269 (294)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 3444999999999998888899888888887774
No 10
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=41.94 E-value=19 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCceeecCCeeeeeccCCCcccc
Q 034889 33 LSLAQAIVDSAGVIVQSADLTICYDERGAKYEL 65 (80)
Q Consensus 33 l~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~l 65 (80)
++....+|..+|+++|..+|. ||+-..+|+.
T Consensus 228 ~~~v~~~l~~~gL~~P~~~~~--~~~~~g~~~~ 258 (311)
T 3pvt_A 228 VDNTVPQVEMLGMTVPDPDLH--FDTESGHYRF 258 (311)
T ss_dssp HHHHHHHHHHTTCCCSCTTCE--EETTTTEEEC
T ss_pred HHHHHHHHHHcCCCCCCCCcC--ccCCCCceee
Confidence 566778899999999988765 8886666653
No 11
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=41.89 E-value=32 Score=23.02 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=26.2
Q ss_pred HhcHHHHHHHHHHcCceeecCCeeeeeccCCCccccCcee
Q 034889 30 EADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYV 69 (80)
Q Consensus 30 e~dl~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~lP~~v 69 (80)
+-|++.|+.+|+.||.+.- ++ +.++..|....|-..+
T Consensus 98 ~~d~~kAk~LL~eaG~~~~-~~--g~~~~~G~~l~l~l~~ 134 (258)
T 3lvu_A 98 RTNLRRAAQFLEQAGFRIE-QG--QLLGPDGAPLALRFLL 134 (258)
T ss_dssp HHHHHHHHHHHHHTTCEEE-TT--EEECTTSSBCCCEEEE
T ss_pred cCCHHHHHHHHHHcCCEeC-CC--cEECCCCcEEEEEEEe
Confidence 3489999999999999864 32 4566677665554433
No 12
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=41.73 E-value=11 Score=23.30 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=16.8
Q ss_pred CchhhHHHHHHHHHH-hcHHHHHHHHHHcCc
Q 034889 16 GRKGKIWDALRAAAE-ADLSLAQAIVDSAGV 45 (80)
Q Consensus 16 Gr~~EIW~aLraA~e-~dl~tAq~ildaA~i 45 (80)
|++ +.+..|..|+. .+++..+.+|+..+.
T Consensus 1 G~~-~~~~~l~~A~~~g~~~~v~~ll~~~~~ 30 (179)
T 3f6q_A 1 GSP-EFMDDIFTQCREGNAVAVRLWLDNTEN 30 (179)
T ss_dssp -------CCHHHHHHHTCHHHHHHHHHCTTS
T ss_pred CCH-HHHHHHHHHHHcCCHHHHHHHHhcCcc
Confidence 566 77778877776 478888888876543
No 13
>3bqx_A Glyoxalase-related enzyme; VOC superfamily, PSI-2, STRU genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.40A {Fulvimarina pelagi}
Probab=41.07 E-value=44 Score=20.16 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=30.4
Q ss_pred hcHHHHHHHHHHcCceeec-------CCe-eeeeccCCCcccc---CceeeeCCCCc
Q 034889 31 ADLSLAQAIVDSAGVIVQS-------ADL-TICYDERGAKYEL---PKYVLSEPTNL 76 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~-------g~L-~~~YDe~G~~Y~l---P~~v~s~P~Nl 76 (80)
.|++.+..-|.++|+++-. |.. .-+.|-.||...| |.|-+.+|-++
T Consensus 81 ~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~~~~~~~~~~g~~ 137 (150)
T 3bqx_A 81 TEVAPLMERLVAAGGQLLRPADAPPHGGLRGYVADPDGHIWEIAFNPVWPIGADGSV 137 (150)
T ss_dssp GGHHHHHHHHHHTTCEEEEEEECCTTSSEEEEEECTTCCEEEEEECTTSCEETTEEE
T ss_pred HHHHHHHHHHHHCCCEEecCCcccCCCCEEEEEECCCCCEEEEEeCCCceECCCCcE
Confidence 4888888889999987632 322 2577999998775 44444444333
No 14
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.51A {Agrobacterium tumefaciens}
Probab=40.90 E-value=22 Score=22.01 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=26.1
Q ss_pred hcHHHHHHHHHHcCceee------cCCe-eeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQ------SADL-TICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp------~g~L-~~~YDe~G~~Y~l 65 (80)
.|++.+..-|.++|+++- .|.- .-+.|-.||...|
T Consensus 88 ~dld~~~~~l~~~G~~~~~~~~~~~g~~~~~~~DPdG~~iel 129 (160)
T 3r4q_A 88 AEVDEWKTRFEALEIPVEHYHRWPNGSYSVYIRDPAGNSVEV 129 (160)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEECTTSCEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEeccccccCCcEEEEEECCCCCEEEE
Confidence 478888889999999882 2333 3688999997764
No 15
>1nki_A Probable fosfomycin resistance protein; potassium binding loop, manganese binding, transferase; 0.95A {Pseudomonas aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A 1nnr_A
Probab=39.91 E-value=34 Score=20.14 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=25.1
Q ss_pred hcHHHHHHHHHHcCceeec-----CCeeeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQS-----ADLTICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~-----g~L~~~YDe~G~~Y~l 65 (80)
.|++.+..-|.++|+++-. +...-+.|-.||...|
T Consensus 72 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~DPdG~~iel 111 (135)
T 1nki_A 72 ADFARFAAQLRAHGVREWKQNRSEGDSFYFLDPDGHRLEA 111 (135)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCSSSCEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCceecCCCCCeEEEEEECCCCCEEEE
Confidence 4788888889999998753 3334567878877664
No 16
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=39.07 E-value=13 Score=27.23 Aligned_cols=18 Identities=50% Similarity=0.767 Sum_probs=15.6
Q ss_pred cCCCCchhhHHHHHHHHHH
Q 034889 12 PHYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 12 ~~~~Gr~~EIW~aLraA~e 30 (80)
..||||. ||=+|.|..++
T Consensus 146 ~~YggR~-eIv~A~r~l~~ 163 (249)
T 1f75_A 146 LNYGGRK-EIISAVQLIAE 163 (249)
T ss_dssp CSCCHHH-HHHHHHHHHHH
T ss_pred ecCCCHH-HHHHHHHHHHH
Confidence 3599999 99999998876
No 17
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.78 E-value=36 Score=21.68 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=23.7
Q ss_pred HHHHHHHHh---cHHHHHHHHHHcCceeecCC
Q 034889 23 DALRAAAEA---DLSLAQAIVDSAGVIVQSAD 51 (80)
Q Consensus 23 ~aLraA~e~---dl~tAq~ildaA~itlp~g~ 51 (80)
+.|+.|+++ |+..|-++|..-+...|.-+
T Consensus 41 ~~L~~ALkas~Gdl~~AV~~LT~~~~~~P~q~ 72 (80)
T 1vdl_A 41 QILQQALKDSNGNLELAVAFLTAKNAKTPPQE 72 (80)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTSCCCCSCS
T ss_pred HHHHHHHHhccCCHHHHHHHHhcccccCCCCc
Confidence 456667664 99999999999999998755
No 18
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A {Plasmodium falciparum}
Probab=37.90 E-value=8.1 Score=28.97 Aligned_cols=22 Identities=23% Similarity=0.761 Sum_probs=18.2
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAA 29 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~ 29 (80)
+.|++||+.- |+ +||.|+-=+.
T Consensus 134 ~~Re~WW~~N-----r~-~VWkam~C~~ 155 (306)
T 2y8d_A 134 EKRKKWWDMN-----KY-HIWESMLCGY 155 (306)
T ss_dssp HHHHHHHHHH-----HH-HHHHHHHHHH
T ss_pred ccHHHHHHHh-----HH-HHHHHhhhcc
Confidence 5799999876 66 9999998874
No 19
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin sulphate A, membrane protein DBL, malaria; 3.00A {Plasmodium falciparum}
Probab=37.30 E-value=8.4 Score=28.79 Aligned_cols=22 Identities=23% Similarity=0.770 Sum_probs=18.2
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAA 29 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~ 29 (80)
+.|++||+.- |+ +||.|+-=++
T Consensus 129 ~~Re~WW~~n-----r~-~IWkam~C~~ 150 (302)
T 2wau_A 129 EKRKKWWDMN-----KY-HIWESMLSGY 150 (302)
T ss_dssp HHHHHHHHHH-----HH-HHHHHHHHHH
T ss_pred ccHHHHHHHh-----hH-hhhhhhcccc
Confidence 5799999876 66 9999998774
No 20
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.82 E-value=5.3 Score=27.58 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=39.6
Q ss_pred CCCchhhHHHHHHHHHHhcHHHHHHHHHHcCce--eecCCeee-----eeccCCC--ccccCceeeeCC
Q 034889 14 YGGRKGKIWDALRAAAEADLSLAQAIVDSAGVI--VQSADLTI-----CYDERGA--KYELPKYVLSEP 73 (80)
Q Consensus 14 ~~Gr~~EIW~aLraA~e~dl~tAq~ildaA~it--lp~g~L~~-----~YDe~G~--~Y~lP~~v~s~P 73 (80)
+-|.+ .|.-||...-=--..+|+.|+..|||. .--|+|+. .=+...+ .|.||.|.++-+
T Consensus 15 i~~~k-~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w~lNr~ 82 (148)
T 3j20_O 15 LDGNK-QLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRWAVNRP 82 (148)
T ss_dssp EECSS-CHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTTTSSEE
T ss_pred CCCCC-EehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChhhhccc
Confidence 45676 676666433223789999999999995 55678871 1123333 488999998754
No 21
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=36.06 E-value=36 Score=22.76 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=23.3
Q ss_pred HhcHHHHHHHHHHcCceeecCCeeeeeccCCCcccc
Q 034889 30 EADLSLAQAIVDSAGVIVQSADLTICYDERGAKYEL 65 (80)
Q Consensus 30 e~dl~tAq~ildaA~itlp~g~L~~~YDe~G~~Y~l 65 (80)
+-|++.|+.+|+.||.+.-.+ +.++..|....|
T Consensus 99 ~~d~~kAk~LL~eaG~~~~~~---g~~~~~G~~l~l 131 (259)
T 3pam_A 99 RLNAQKAWKLLQEAGFTKKNN---RLIAPNGLPFQF 131 (259)
T ss_dssp HHHHHHHHHHHHHTTCEEETT---EEECTTSCBCEE
T ss_pred ccCHHHHHHHHHHcCCccCCC---cEECCCCcEEEE
Confidence 348999999999999987322 455666654443
No 22
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=35.92 E-value=17 Score=26.76 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=25.8
Q ss_pred cCCCCchhhHHHHHHHHHHh-----------cHHHHHHHHHHcCceeecCCeee
Q 034889 12 PHYGGRKGKIWDALRAAAEA-----------DLSLAQAIVDSAGVIVQSADLTI 54 (80)
Q Consensus 12 ~~~~Gr~~EIW~aLraA~e~-----------dl~tAq~ildaA~itlp~g~L~~ 54 (80)
..||||. ||=+|.|..++. +.++=..-|..++ +|..||-+
T Consensus 143 ~~YgGR~-EIv~A~r~l~~~v~~g~l~~~~I~e~~i~~~L~t~~--~PdpDLlI 193 (253)
T 3qas_B 143 ANYGGRW-DIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHE--LAPVDLVI 193 (253)
T ss_dssp SSCCHHH-HHHHHHHHHHHHHHTTSCCGGGCCHHHHHTTSTTTT--SCCCCEEE
T ss_pred ecCCCHH-HHHHHHHHHHHHHHcCCCChHHCCHHHHHHhhccCC--CCCCcEEE
Confidence 3599999 999999988762 2333333333444 57777753
No 23
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=35.02 E-value=29 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHHHHHHh--------cHHHHHHHHHHc
Q 034889 22 WDALRAAAEA--------DLSLAQAIVDSA 43 (80)
Q Consensus 22 W~aLraA~e~--------dl~tAq~ildaA 43 (80)
=.|+++|++. |..||+.||+..
T Consensus 234 ~~ai~~al~~~~~~~LITDe~tA~~lL~~~ 263 (267)
T 3kv1_A 234 ALSIMGALRTGVIDVLATSVSCAMALLNLA 263 (267)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeCHHHHHHHHhcc
Confidence 3788999884 999999999864
No 24
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence, duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo alto}
Probab=34.85 E-value=9.6 Score=30.65 Aligned_cols=22 Identities=41% Similarity=1.042 Sum_probs=17.5
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAA 29 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~ 29 (80)
+.|++||+.- |+ +||.|+-=++
T Consensus 251 ~lREdWW~~N-----r~-~VWkAMtC~~ 272 (487)
T 2xu0_A 251 KLREDWWTIN-----RE-QIWKALTCSA 272 (487)
T ss_dssp HHHHHHHHHH-----HH-HHHHHHTTTC
T ss_pred ccHHHHHHHh-----HH-HHHHHHhccC
Confidence 5799999876 66 9999987654
No 25
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET: YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1 PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A* 3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Probab=34.57 E-value=57 Score=22.25 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=27.4
Q ss_pred hhhhcCcCCCCchhhHHHHHHHHHHh---cHHHHHHHHHHcCc
Q 034889 6 EFWDTAPHYGGRKGKIWDALRAAAEA---DLSLAQAIVDSAGV 45 (80)
Q Consensus 6 EFwdT~~~~~Gr~~EIW~aLraA~e~---dl~tAq~ildaA~i 45 (80)
.||..-. ..+.+ +.|+..|++++. |-+..+.||++|..
T Consensus 159 ~f~~~~~-~~~~~-~~~~~fr~~Ld~~~~~~~~~~~ii~eA~~ 199 (215)
T 1wzd_A 159 GFYHFEG-IAKLK-VYKDEYREKLNNLELSDEQREHLLKEATD 199 (215)
T ss_dssp GGGCCTT-CSCHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred eeeecCC-cCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4665441 12345 999999999985 77888899988854
No 26
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=34.44 E-value=9.5 Score=27.63 Aligned_cols=13 Identities=46% Similarity=0.961 Sum_probs=10.1
Q ss_pred hhhhcCcCCC--Cch
Q 034889 6 EFWDTAPHYG--GRK 18 (80)
Q Consensus 6 EFwdT~~~~~--Gr~ 18 (80)
-||||++.|+ |+.
T Consensus 49 ~~~DTA~~Yg~~G~s 63 (337)
T 3v0s_A 49 TFFDTSDIYGENGSN 63 (337)
T ss_dssp CEEECCTTSSSTTHH
T ss_pred CEEEChhhhCCCCcH
Confidence 3899999998 455
No 27
>4hc5_A Glyoxalase/bleomycin resistance protein/dioxygena; MCSG, GEBA genomes, structural genomics, midwest center for structural genomics; HET: MSE GOL; 1.45A {Sphaerobacter thermophilus}
Probab=33.84 E-value=43 Score=19.04 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHcCceeec-------C-CeeeeeccCCCccc
Q 034889 32 DLSLAQAIVDSAGVIVQS-------A-DLTICYDERGAKYE 64 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~-------g-~L~~~YDe~G~~Y~ 64 (80)
|++.+..-|.++|+++-. | ....+.|-.|+...
T Consensus 89 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~e 129 (133)
T 4hc5_A 89 DIDEAYKTLTERGVTFTKPPEMMPWGQRATWFSDPDGNQFF 129 (133)
T ss_dssp CHHHHHHHHHHTTCEESSSCEECTTSCEEEEEECTTCEEEE
T ss_pred CHHHHHHHHHHCCCEeecCCCcCCCCCEEEEEECCCCCEEE
Confidence 888889999999998753 2 12245666666554
No 28
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=33.00 E-value=7.1 Score=27.04 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=40.3
Q ss_pred CCCchhhHHHHHHHHHHhcHHHHHHHHHHcCc--eeecCCee-e----eeccCC--CccccCceeeeCCC
Q 034889 14 YGGRKGKIWDALRAAAEADLSLAQAIVDSAGV--IVQSADLT-I----CYDERG--AKYELPKYVLSEPT 74 (80)
Q Consensus 14 ~~Gr~~EIW~aLraA~e~dl~tAq~ildaA~i--tlp~g~L~-~----~YDe~G--~~Y~lP~~v~s~P~ 74 (80)
+-|++ .|.-||...-=--..+|+.|+..||| ..--|+|+ . .=+... ..|.+|.|.++-.-
T Consensus 20 i~~~k-~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~k 88 (152)
T 3iz6_M 20 VDGKQ-KIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKK 88 (152)
T ss_dssp CCCSS-BHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCC
T ss_pred CCCCc-EeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcchhhhhhhc
Confidence 45776 66666633222378999999999999 46778887 1 122222 36899999887543
No 29
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=32.59 E-value=14 Score=23.06 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=11.8
Q ss_pred eeccCCCccccCce
Q 034889 55 CYDERGAKYELPKY 68 (80)
Q Consensus 55 ~YDe~G~~Y~lP~~ 68 (80)
|+..+|++|.||+-
T Consensus 64 ~~n~RG~~ySlPkp 77 (79)
T 2con_A 64 VLNPRGLRYSSGPS 77 (79)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred ccccCCCCccCCCC
Confidence 47889999999974
No 30
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=32.32 E-value=17 Score=18.90 Aligned_cols=9 Identities=67% Similarity=1.343 Sum_probs=6.8
Q ss_pred CCchhhHHHH
Q 034889 15 GGRKGKIWDA 24 (80)
Q Consensus 15 ~Gr~~EIW~a 24 (80)
++++ |||-|
T Consensus 3 ~~~P-E~wiA 11 (27)
T 3kj0_B 3 GGRP-EIWYA 11 (27)
T ss_dssp -CCH-HHHHH
T ss_pred CCCc-hhHHH
Confidence 6889 99966
No 31
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=31.22 E-value=11 Score=26.72 Aligned_cols=10 Identities=50% Similarity=0.650 Sum_probs=8.4
Q ss_pred hhhhcCcCCC
Q 034889 6 EFWDTAPHYG 15 (80)
Q Consensus 6 EFwdT~~~~~ 15 (80)
-||||++.|+
T Consensus 50 ~~~DTA~~Yg 59 (312)
T 1pyf_A 50 TMLDTAYIYG 59 (312)
T ss_dssp CEEECCTTTT
T ss_pred CEEECccccC
Confidence 3799999987
No 32
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=31.01 E-value=22 Score=26.28 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=15.4
Q ss_pred cCCCCchhhHHHHHHHHHH
Q 034889 12 PHYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 12 ~~~~Gr~~EIW~aLraA~e 30 (80)
..||||. ||=+|.|..++
T Consensus 143 ~~YggR~-EI~~Avr~ia~ 160 (253)
T 3sgv_B 143 ANYGGRW-DIVQGVRQLAE 160 (253)
T ss_dssp SSCCHHH-HHHHHHHHHHH
T ss_pred ecCCCHH-HHHHHHHHHHH
Confidence 3599999 99999998765
No 33
>1sk7_A Hypothetical protein PA-HO; heme oxygenase, heme degradation, regioselectivity, oxidored; HET: HEM; 1.60A {Pseudomonas aeruginosa} SCOP: a.132.1.2
Probab=30.85 E-value=68 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=24.9
Q ss_pred CCchhhHHHHHHHHHHh---cHHHHHHHHHHcCc
Q 034889 15 GGRKGKIWDALRAAAEA---DLSLAQAIVDSAGV 45 (80)
Q Consensus 15 ~Gr~~EIW~aLraA~e~---dl~tAq~ildaA~i 45 (80)
.|++ .-|...++++++ |-+..+.||++|..
T Consensus 152 ~~~~-~~wk~f~~~Ld~l~~d~~~~~~ii~~A~~ 184 (198)
T 1sk7_A 152 GGRA-QGWKSFVAILDGIELNEEEERLAAKGASD 184 (198)
T ss_dssp TCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ccch-HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3566 899999999986 78889999999854
No 34
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=30.26 E-value=50 Score=19.74 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=25.6
Q ss_pred hcHHHHHHHHHHcCceeec-------C----CeeeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQS-------A----DLTICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~-------g----~L~~~YDe~G~~Y~l 65 (80)
.|++.+.+-|.++|+++-. + ...-+.|-.||..+|
T Consensus 95 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdG~~iEl 140 (152)
T 3huh_A 95 TPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEI 140 (152)
T ss_dssp SCHHHHHHHHHHTTCCCSEEEEEEEETTEEEEEEEEECTTCCEEEE
T ss_pred CCHHHHHHHHHHCCCeEecCCccccCCCCcEEEEEEECCCCCEEEE
Confidence 3899999999999998622 1 222577888888775
No 35
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy, VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A 3bql_A 3cml_A 3cpz_A
Probab=30.20 E-value=17 Score=27.90 Aligned_cols=23 Identities=26% Similarity=0.752 Sum_probs=18.6
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~e 30 (80)
+.|+++|+.- |+ +||.||-=++.
T Consensus 182 ~lREdWW~~N-----r~-~VWkAmtC~~~ 204 (360)
T 3bqk_A 182 ENVNAWWKGI-----ER-EMWDAVRCAIT 204 (360)
T ss_dssp HHHHHHHHHH-----HH-HHHHHHHHHHH
T ss_pred hhHHHHHHHH-----HH-HHHhhhccccc
Confidence 5799999875 66 99999987764
No 36
>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2
Probab=30.11 E-value=46 Score=18.77 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHcCceeec-------C-CeeeeeccCCCccc
Q 034889 32 DLSLAQAIVDSAGVIVQS-------A-DLTICYDERGAKYE 64 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~-------g-~L~~~YDe~G~~Y~ 64 (80)
|++.+..-|.++|+++-. | ...-+.|-.||...
T Consensus 74 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie 114 (119)
T 2pjs_A 74 NFDEVHARILKAGLPIEYGPVTEAWGVQRLFLRDPFGKLIN 114 (119)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CHHHHHHHHHHCCCccccCCccCCCccEEEEEECCCCCEEE
Confidence 788888889999987632 2 12245566666654
No 37
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=30.07 E-value=13 Score=26.79 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=9.7
Q ss_pred hhhhcCcCCC-Cch
Q 034889 6 EFWDTAPHYG-GRK 18 (80)
Q Consensus 6 EFwdT~~~~~-Gr~ 18 (80)
-||||++.|+ |+.
T Consensus 63 ~~~DTA~~Yg~G~s 76 (317)
T 1ynp_A 63 NYLDTADLYNQGLN 76 (317)
T ss_dssp CEEECSCBTTBCCC
T ss_pred CeEECccccCCCch
Confidence 3789999887 544
No 38
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=29.70 E-value=22 Score=25.95 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=15.7
Q ss_pred cCCCCchhhHHHHHHHHHH
Q 034889 12 PHYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 12 ~~~~Gr~~EIW~aLraA~e 30 (80)
..||||. ||=+|.|..++
T Consensus 141 ~~YggR~-EIv~A~r~i~~ 158 (245)
T 2d2r_A 141 LNYGSKN-ELSRAFKSLLE 158 (245)
T ss_dssp CSCCHHH-HHHHHHHHHHH
T ss_pred ecCCCHH-HHHHHHHHHHH
Confidence 3599999 99999999876
No 39
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=29.69 E-value=49 Score=19.20 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=25.2
Q ss_pred hcHHHHHHHHHHcCceeec-------C---Ce--eeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQS-------A---DL--TICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~-------g---~L--~~~YDe~G~~Y~l 65 (80)
.|++.+..-|.++|+.+-. + .. .-+.|-.||..+|
T Consensus 79 ~d~~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~~~~DPdGn~iel 125 (135)
T 3rri_A 79 KHFDNLYKLAKQRGIPFYHDLSRRFEGLIEEHETFFLIDPSNNLLEF 125 (135)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESTTSTTCEEEEEEECTTCCEEEE
T ss_pred HhHHHHHHHHHHcCCceecCcccccCCCCCceEEEEEECCCCCEEEE
Confidence 4789999999999998732 2 11 2567888887765
No 40
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding loop, transferase; 2.50A {Serratia marcescens} SCOP: d.32.1.2
Probab=29.46 E-value=52 Score=19.44 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=24.4
Q ss_pred hcHHHHHHHHHHcCceeecC-----CeeeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQSA-----DLTICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~g-----~L~~~YDe~G~~Y~l 65 (80)
.|++.+..-|.++|+++-.. ....+.|-.||...|
T Consensus 75 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~DPdG~~iel 114 (141)
T 1npb_A 75 EDFEPLSQRLEQAGVTIWKQNKSEGASFYFLDPDGHKLEL 114 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEECCCSSSEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCeEeccCCCceeEEEEECCCCCEEEE
Confidence 47888888899999876432 223567777777653
No 41
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=29.44 E-value=40 Score=19.15 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHcCceeecC-----------CeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQSA-----------DLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g-----------~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++-.+ ...-+.|-.||...|
T Consensus 83 d~~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~~~DPdG~~iel 127 (133)
T 3ey7_A 83 VLSDAMKHVEDQGVTIMEGPVKRTGAQGAITSFYFRDPDGNLIEV 127 (133)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHCCCccccCCccccCCCCCeEEEEEECCCCCEEEE
Confidence 4999999999999987432 122567777877664
No 42
>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0
Probab=29.39 E-value=55 Score=18.36 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHcCceeec
Q 034889 32 DLSLAQAIVDSAGVIVQS 49 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~ 49 (80)
|++.+..-|.++|+.+..
T Consensus 87 d~~~~~~~l~~~G~~~~~ 104 (134)
T 3rmu_A 87 NINAAVMDLKKKKIRSLS 104 (134)
T ss_dssp CHHHHHHHHHHTTCTTBC
T ss_pred CHHHHHHHHHHcCCcccC
Confidence 899999999999998743
No 43
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=29.38 E-value=23 Score=25.26 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=13.5
Q ss_pred eeeccCCCccccCceeeeCCCCc
Q 034889 54 ICYDERGAKYELPKYVLSEPTNL 76 (80)
Q Consensus 54 ~~YDe~G~~Y~lP~~v~s~P~Nl 76 (80)
+++|..|+.| |+|+| |+
T Consensus 229 ia~d~~G~ly-----IvsE~-n~ 245 (255)
T 3qqz_A 229 VAMDASGNIY-----IVSEP-NR 245 (255)
T ss_dssp EEECTTCCEE-----EEETT-TE
T ss_pred eEECCCCCEE-----EEcCC-ce
Confidence 6899999865 78888 55
No 44
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=29.31 E-value=57 Score=18.23 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHcCceee
Q 034889 32 DLSLAQAIVDSAGVIVQ 48 (80)
Q Consensus 32 dl~tAq~ildaA~itlp 48 (80)
|++.+..-|.++|+++-
T Consensus 83 d~~~~~~~l~~~G~~~~ 99 (126)
T 2p25_A 83 HIEEVIAFLNEQGIETE 99 (126)
T ss_dssp CHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHcCCccc
Confidence 88888899999998863
No 45
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=29.31 E-value=32 Score=19.38 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHcCceee
Q 034889 32 DLSLAQAIVDSAGVIVQ 48 (80)
Q Consensus 32 dl~tAq~ildaA~itlp 48 (80)
.++.|+.+|.++|+++-
T Consensus 17 ~~~~A~~~L~~~Gl~~~ 33 (71)
T 3ouv_A 17 TVDVAQKNMNVYGFTKF 33 (71)
T ss_dssp BHHHHHHHHHHTTCCCE
T ss_pred CHHHHHHHHHHCCCeEE
Confidence 47789999999999763
No 46
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=29.30 E-value=29 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHcCceeec
Q 034889 32 DLSLAQAIVDSAGVIVQS 49 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~ 49 (80)
++..++..|+.+|+.+|+
T Consensus 138 ql~~~~~~l~~~g~~~~~ 155 (159)
T 1p2x_A 138 DVSIIVRRLRQSNVILPN 155 (159)
T ss_dssp HHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 588999999999999886
No 47
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy antigen RECE chemokines, cell invasion; HET: EDO; 1.95A {Plasmodium vivax} SCOP: a.264.1.1 PDB: 2c6j_A
Probab=29.10 E-value=14 Score=28.32 Aligned_cols=22 Identities=27% Similarity=0.801 Sum_probs=17.2
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAA 29 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~ 29 (80)
+.|+++|+.- |+ +||.|+--++
T Consensus 136 ~lRedWW~~N-----r~-~VWkamtC~~ 157 (317)
T 3rrc_A 136 QRRKQWWNES-----KA-QIWTAMMYSV 157 (317)
T ss_dssp HHHHHHHHHH-----HH-HHHHHHTTTC
T ss_pred hHHHHHHHHh-----HH-HHHhhhhcCC
Confidence 5799999865 66 9999987553
No 48
>2rk0_A Glyoxalase/bleomycin resistance protein/dioxygena; 11002Z, glyoxylase, dioxygenas PSI-II; 2.04A {Frankia SP}
Probab=28.56 E-value=37 Score=19.95 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=21.2
Q ss_pred hcHHHHHHHHHHcCceeec------CCeeeeeccCCCccc
Q 034889 31 ADLSLAQAIVDSAGVIVQS------ADLTICYDERGAKYE 64 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~------g~L~~~YDe~G~~Y~ 64 (80)
.|++.+..-|.++|+++-. |...-+.|-.||..+
T Consensus 84 ~d~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~DPdG~~ie 123 (136)
T 2rk0_A 84 TDLDVLEERLAKAGAAFTPTQELPFGWILAFRDADNIALE 123 (136)
T ss_dssp HHHHHHHHHHHHHTCCBCCCEEETTEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHCCCcccCccccCCceEEEEECCCCCEEE
Confidence 3788888888889987632 211234566666554
No 49
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=28.25 E-value=60 Score=19.09 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHcCceeec-------CC-eeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQS-------AD-LTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~-------g~-L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++-. |. ..-+.|-.||...|
T Consensus 84 dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel 125 (138)
T 2a4x_A 84 SVDKKYAELVDAGYEGHLKPWNAVWGQRYAIVKDPDGNVVDL 125 (138)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEETTTEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHCCCceeeCCcccCCCcEEEEEECCCCCEEEE
Confidence 788888889999987632 21 22567888887764
No 50
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=28.02 E-value=9.4 Score=27.27 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=9.5
Q ss_pred hhhhcCcCCC-Cch
Q 034889 6 EFWDTAPHYG-GRK 18 (80)
Q Consensus 6 EFwdT~~~~~-Gr~ 18 (80)
-||||++.|+ |+.
T Consensus 48 ~~~DTA~~Yg~G~s 61 (327)
T 3eau_A 48 NLFDTAEVYAAGKA 61 (327)
T ss_dssp CEEEEETTGGGGHH
T ss_pred CEEECccccCCCCh
Confidence 3789998887 444
No 51
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=27.80 E-value=14 Score=26.68 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=8.5
Q ss_pred hhhhcCcCCC
Q 034889 6 EFWDTAPHYG 15 (80)
Q Consensus 6 EFwdT~~~~~ 15 (80)
-||||++.|+
T Consensus 58 ~~~DTA~~Yg 67 (346)
T 3n6q_A 58 THFDLANNYG 67 (346)
T ss_dssp CEEECCTTCT
T ss_pred CEEECccccC
Confidence 3889999998
No 52
>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2
Probab=27.66 E-value=41 Score=19.15 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHcCcee
Q 034889 32 DLSLAQAIVDSAGVIV 47 (80)
Q Consensus 32 dl~tAq~ildaA~itl 47 (80)
|++.+..-|.++|+++
T Consensus 73 d~~~~~~~l~~~G~~~ 88 (118)
T 2i7r_A 73 DVDQNYKRLNELGIKV 88 (118)
T ss_dssp CHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHCCCce
Confidence 8888999999999886
No 53
>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A
Probab=27.63 E-value=71 Score=18.34 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=24.1
Q ss_pred hcHHHHHHHHHHcCceeecC--------CeeeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~g--------~L~~~YDe~G~~Y~l 65 (80)
.|++.+..-|.++|+++... ...-+.|-.||...|
T Consensus 77 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel 119 (133)
T 2p7o_A 77 EEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFEL 119 (133)
T ss_dssp GGHHHHHHHHHHHTCCEECCCCCCTTCCCEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHCCCcccCCCccCCCCeeEEEEECCCCCEEEE
Confidence 48888888999999886432 122466777777664
No 54
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=27.44 E-value=41 Score=20.72 Aligned_cols=34 Identities=3% Similarity=-0.059 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHcCceee-------cCCeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQ-------SADLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp-------~g~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++. .|....+.|-.||...|
T Consensus 80 dvd~~~~~l~~~G~~i~~~p~~~~~G~~~~~~DPdG~~iel 120 (148)
T 3rhe_A 80 MVDEIHRQWSDKEISIIQPPTQMDFGYTFVGVDPDEHRLRI 120 (148)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEETTEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHhCCCEEEeCCeecCCCcEEEEECCCCCEEEE
Confidence 58888888889998873 23233677888887764
No 55
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=27.40 E-value=33 Score=25.69 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=26.0
Q ss_pred CCCCchhhHHHHHHHHHHh-----------cHHHHHHHHHHcCceeecCCeee
Q 034889 13 HYGGRKGKIWDALRAAAEA-----------DLSLAQAIVDSAGVIVQSADLTI 54 (80)
Q Consensus 13 ~~~Gr~~EIW~aLraA~e~-----------dl~tAq~ildaA~itlp~g~L~~ 54 (80)
.||||. ||=+|.|..++. +.++=..-|..++ +|..||-+
T Consensus 182 ~YgGR~-EIv~A~r~la~~v~~g~l~~~dI~e~~i~~~L~t~~--~PdPDLlI 231 (284)
T 2vg3_A 182 NYGGRT-EITEATREIAREVAAGRLNPERITESTIARHLQRPD--IPDVDLFL 231 (284)
T ss_dssp EECHHH-HHHHHHHHHHHHHHTTSSCGGGCCHHHHHHHSSSTT--CCCCSEEE
T ss_pred cCCCHH-HHHHHHHHHHHHHHcCCCChHHCCHHHHHHHhccCC--CCCCcEEE
Confidence 589999 999999987762 3344444444444 57777754
No 56
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=27.36 E-value=26 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=14.9
Q ss_pred CCCCchhhHHHHHHHHHH
Q 034889 13 HYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 13 ~~~Gr~~EIW~aLraA~e 30 (80)
.||||. ||=+|.|..++
T Consensus 151 ~YggR~-EI~~Avr~i~~ 167 (256)
T 4h8e_A 151 NYGGRA-ELVHSIKNMFD 167 (256)
T ss_dssp EECHHH-HHHHHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHH
Confidence 589999 99999998765
No 57
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Probab=27.30 E-value=70 Score=18.89 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=25.1
Q ss_pred hcHHHHHHHHHHcCceeecC--------CeeeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~g--------~L~~~YDe~G~~Y~l 65 (80)
.|++.+..-|.++|+++-.+ ...-+.|-.||...|
T Consensus 74 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel 116 (145)
T 3uh9_A 74 EALDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHKFEF 116 (145)
T ss_dssp HHHHHHHHHHHHTTCCBCCCCCCCGGGCCEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCeEecCCccCCCCeeEEEEEcCCCCEEEE
Confidence 48889999999999987332 222567888877664
No 58
>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}
Probab=27.25 E-value=50 Score=19.89 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=22.6
Q ss_pred hcHHHHHHHHHHcCceeec------C--CeeeeeccCCCccc
Q 034889 31 ADLSLAQAIVDSAGVIVQS------A--DLTICYDERGAKYE 64 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~------g--~L~~~YDe~G~~Y~ 64 (80)
.|++.+..-|.++|+++-. + ...-+.|-.||..+
T Consensus 96 ~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~ie 137 (141)
T 3ghj_A 96 SEIEPLKKALESKGVSVHGPVNQEWMQAVSLYFADPNGHALE 137 (141)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEGGGTEEEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHHCCCeEeCCcccCCCCceEEEEECCCCCEEE
Confidence 3899999999999998741 1 11235566666544
No 59
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=26.81 E-value=47 Score=19.79 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHcCce-ee-------cCCeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVI-VQ-------SADLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~it-lp-------~g~L~~~YDe~G~~Y~l 65 (80)
|++.+.+-|.++|++ +- .|....+.|-.||...|
T Consensus 76 dvd~~~~~l~~~G~~~~~~~p~~~~~G~~~~~~DPdGn~iel 117 (128)
T 3g12_A 76 DLEKTVQELVKIPGAMCILDPTDMPDGKKAIVLDPDGHSIEL 117 (128)
T ss_dssp CHHHHHHHHTTSTTCEEEEEEEECC-CEEEEEECTTCCEEEE
T ss_pred CHHHHHHHHHHCCCceeccCceeCCCccEEEEECCCCCEEEE
Confidence 788889999999998 42 22233566777776653
No 60
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=26.78 E-value=11 Score=22.90 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=6.5
Q ss_pred hhhhhcCc
Q 034889 5 DEFWDTAP 12 (80)
Q Consensus 5 ~EFwdT~~ 12 (80)
+|||.||-
T Consensus 45 ~eFW~~r~ 52 (61)
T 2dii_A 45 EEFWANRL 52 (61)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 58999983
No 61
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=26.77 E-value=38 Score=23.92 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=17.7
Q ss_pred HHHHHHHHh--------cHHHHHHHHHHc
Q 034889 23 DALRAAAEA--------DLSLAQAIVDSA 43 (80)
Q Consensus 23 ~aLraA~e~--------dl~tAq~ildaA 43 (80)
.||++|++. |.++|+.+|+..
T Consensus 235 ~AI~aal~g~~~~~LItDe~aA~~Ll~~~ 263 (266)
T 2gnp_A 235 SSILSVLRANLVNHLITDKNTILKVLEED 263 (266)
T ss_dssp HHHHHHHHTTCCSEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEECHHHHHHHHhhc
Confidence 688889885 999999998754
No 62
>2c21_A Trypanothione-dependent glyoxalase I; lyase, glutathionylspermidine, methylglyoxal, detoxification; 2.0A {Leishmania major} SCOP: d.32.1.1
Probab=26.46 E-value=87 Score=18.49 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHcCceeecC----CeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQSA----DLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g----~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++... .++-+.|-.||...|
T Consensus 87 d~~~~~~~l~~~G~~~~~~~g~~~~~~~~DPdG~~iel 124 (144)
T 2c21_A 87 DVKELVADMRKHDVPIDYEDESGFMAFVVDPDGYYIEL 124 (144)
T ss_dssp CHHHHHHHHHHTTCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred CHHHHHHHHHHCCCEEeccCCcEEEEEEECCCCCEEEE
Confidence 7888888999999887542 122455767766553
No 63
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=25.93 E-value=18 Score=26.10 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=8.8
Q ss_pred hhhhcCcCCC
Q 034889 6 EFWDTAPHYG 15 (80)
Q Consensus 6 EFwdT~~~~~ 15 (80)
-||||++.|+
T Consensus 68 ~~~DTA~~Yg 77 (319)
T 1ur3_M 68 TTVDHADIYG 77 (319)
T ss_dssp CEEECCSSTT
T ss_pred CeEEcccccC
Confidence 4899999998
No 64
>1j77_A HEMO, heme oxygenase; proximal histidine, distal helix, oxidoreductase; HET: HEM; 1.50A {Neisseria meningitidis} SCOP: a.132.1.2 PDB: 1p3t_A* 1p3u_A* 1p3v_A*
Probab=25.91 E-value=92 Score=21.36 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.8
Q ss_pred CchhhHHHHHHHHHHh---cHHHHHHHHHHcCce
Q 034889 16 GRKGKIWDALRAAAEA---DLSLAQAIVDSAGVI 46 (80)
Q Consensus 16 Gr~~EIW~aLraA~e~---dl~tAq~ildaA~it 46 (80)
+++ +-|...+++++. |-+..+.||++|..+
T Consensus 148 ~~~-~~w~~fr~~Ld~l~~d~~~~~~ii~~A~~a 180 (209)
T 1j77_A 148 GRG-KHWRAFVEHLNALNLTPEAEAEAIQGAREA 180 (209)
T ss_dssp CHH-HHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 566 789999999986 788889999988654
No 65
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=25.90 E-value=40 Score=24.09 Aligned_cols=17 Identities=53% Similarity=0.851 Sum_probs=15.1
Q ss_pred CCCCchhhHHHHHHHHHH
Q 034889 13 HYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 13 ~~~Gr~~EIW~aLraA~e 30 (80)
.||||. ||=+|.|..++
T Consensus 128 ~YggR~-eI~~A~r~l~~ 144 (227)
T 2vg0_A 128 GYGGRR-EIVDAVRALLS 144 (227)
T ss_dssp EECHHH-HHHHHHHHHHH
T ss_pred cCCCHH-HHHHHHHHHHH
Confidence 499999 99999998775
No 66
>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2
Probab=25.84 E-value=78 Score=18.60 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHcCceeecC--------CeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g--------~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++..+ ...-+.|-.||...|
T Consensus 78 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel 119 (139)
T 1r9c_A 78 DFDRYAERVGKLGLDMRPPRPRVEGEGRSIYFYDDDNHMFEL 119 (139)
T ss_dssp GHHHHHHHHHHHTCCBCCCCC-----CCEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHCCCcccCCcccCCCCeEEEEEECCCCCEEEE
Confidence 8888888899999876432 122567888888764
No 67
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=25.62 E-value=40 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.7
Q ss_pred HHHHHHHHh--------cHHHHHHHHH
Q 034889 23 DALRAAAEA--------DLSLAQAIVD 41 (80)
Q Consensus 23 ~aLraA~e~--------dl~tAq~ild 41 (80)
.|+++|++. |..||+.||.
T Consensus 240 ~Ai~aal~g~~~~~LITDe~tA~~lL~ 266 (266)
T 3efb_A 240 SGIIGALRGKYINCLVTNSSTAELLLK 266 (266)
T ss_dssp CHHHHHHHTTSCSEEEEEHHHHHHHHC
T ss_pred HHHHHHHhcCCCCEEEeCHHHHHHHhC
Confidence 578888884 9999999984
No 68
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=24.93 E-value=14 Score=26.63 Aligned_cols=13 Identities=54% Similarity=1.002 Sum_probs=9.9
Q ss_pred hhhhcCcCCC-Cch
Q 034889 6 EFWDTAPHYG-GRK 18 (80)
Q Consensus 6 EFwdT~~~~~-Gr~ 18 (80)
-||||++.|+ |+.
T Consensus 49 ~~~DTA~~Yg~G~s 62 (333)
T 1pz1_A 49 TLIDTAPAYGFGQS 62 (333)
T ss_dssp CEEECCTTGGGGHH
T ss_pred CeEECccccCCCch
Confidence 3899999998 444
No 69
>2qqz_A Glyoxalase family protein, putative; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 1.92A {Bacillus anthracis str}
Probab=24.60 E-value=69 Score=18.35 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHcCceeecCC------eeeeeccCCCccc
Q 034889 32 DLSLAQAIVDSAGVIVQSAD------LTICYDERGAKYE 64 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g~------L~~~YDe~G~~Y~ 64 (80)
|++.+..-|.++|+++..+. ..-+.|-.||...
T Consensus 82 d~~~~~~~l~~~G~~~~~~~~~~g~~~~~~~DPdG~~ie 120 (126)
T 2qqz_A 82 KIDEFKQELIKQGIEVIDDHARPDVIRFYVSDPFGNRIE 120 (126)
T ss_dssp THHHHHHHHHHTTCCCEEECSSTTEEEEEEECTTSCEEE
T ss_pred CHHHHHHHHHHcCCCccCCCCCCCeeEEEEECCCCCEEE
Confidence 78888888999998764322 1134566666554
No 70
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain, erythrocyte binding, merozoite SU malaria, cell adhesion; 2.09A {Plasmodium falciparum}
Probab=24.54 E-value=18 Score=27.20 Aligned_cols=23 Identities=17% Similarity=0.666 Sum_probs=18.1
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~e 30 (80)
+.|+.+|+.- |+ +||.|+-=++.
T Consensus 149 ~~re~WW~~N-----r~-~VWkamtC~~~ 171 (305)
T 3vuu_A 149 KDAKKWWTEN-----RH-HVWEAMMCGYQ 171 (305)
T ss_dssp CSHHHHHHHH-----HH-HHHHHHHHHHH
T ss_pred hHHHHHHHHH-----HH-hhhHheeccCc
Confidence 5689999865 66 99999977654
No 71
>2za0_A Glyoxalase I; lyase, lactoylglutathione lyase, methyl- gerfelin; HET: MGI; 1.70A {Mus musculus} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A*
Probab=24.30 E-value=83 Score=19.56 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHcCceeecC-------CeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQSA-------DLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g-------~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++-.+ ...-+.|-.||...|
T Consensus 134 dvd~~~~~l~~~G~~~~~~p~~~~~~~~~~~~DPdG~~iel 174 (184)
T 2za0_A 134 DVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEI 174 (184)
T ss_dssp CHHHHHHHHHHTTCCEEECTTSSSSTTCEEEECTTCCEEEE
T ss_pred CHHHHHHHHHHCCCeeecCCcCCCceeEEEEECCCCCEEEE
Confidence 8888999999999987432 223456777776653
No 72
>3zw5_A Glyoxalase domain-containing protein 5; lyase; 1.60A {Homo sapiens}
Probab=24.21 E-value=50 Score=19.91 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=24.4
Q ss_pred hcHHHHHHHHHHcCceeecC------C-----eeeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQSA------D-----LTICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~g------~-----L~~~YDe~G~~Y~l 65 (80)
.|++.+..-|.++|+.+-.+ . ..-+.|-.||..+|
T Consensus 99 ~dl~~~~~~l~~~G~~~~~~p~~~~~~~g~~~~~~~~DPdGn~iEl 144 (147)
T 3zw5_A 99 VPLEEMIQHLKACDVPIEEGPVPRTGAKGPIMSIYFRDPDRNLIEV 144 (147)
T ss_dssp SCHHHHHHHHHHTTCCCCEEEEEEEETTEEEEEEEEECTTCCEEEE
T ss_pred cCHHHHHHHHHHcCCceeeCcccccCCCCceEEEEEECCCCCEEEE
Confidence 48999999999999987422 1 12456777776654
No 73
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=23.91 E-value=18 Score=26.34 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=8.6
Q ss_pred hhhhcCcCCC
Q 034889 6 EFWDTAPHYG 15 (80)
Q Consensus 6 EFwdT~~~~~ 15 (80)
-||||++.|+
T Consensus 79 ~~~DTA~~Yg 88 (353)
T 3erp_A 79 THFDLANNYG 88 (353)
T ss_dssp CEEECCTTCT
T ss_pred CEEEChhhhC
Confidence 3899999998
No 74
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=23.76 E-value=16 Score=26.16 Aligned_cols=9 Identities=44% Similarity=0.239 Sum_probs=5.2
Q ss_pred hhhcCcCCC
Q 034889 7 FWDTAPHYG 15 (80)
Q Consensus 7 FwdT~~~~~ 15 (80)
||||++.|+
T Consensus 38 ~~DTA~~Yg 46 (327)
T 1gve_A 38 EIDTAFVYA 46 (327)
T ss_dssp EEECCTTGG
T ss_pred EEEchhhcC
Confidence 556666553
No 75
>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}
Probab=23.68 E-value=81 Score=19.30 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHcCceeecCC-------eee-ee---ccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQSAD-------LTI-CY---DERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g~-------L~~-~Y---De~G~~Y~l 65 (80)
|++.+..-|.++|+++-... ... .+ |-.|+..+|
T Consensus 89 Did~~~~~l~~~G~~~~~~~~~~~~~g~~~~f~~~~DPdG~~iEl 133 (161)
T 3oa4_A 89 SIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVLYEF 133 (161)
T ss_dssp CHHHHHHHHHHTTCCBSCSSCEECGGGCEEEEBCGGGTTTCCEEE
T ss_pred CHHHHHHHHHHCCCEecccCcccCCCCcEEEEEeccCCCeEEEEE
Confidence 89999999999999884431 111 22 788887764
No 76
>1we1_A Heme oxygenase 1; oxidoreductase; HET: HEM; 2.50A {Synechocystis SP} SCOP: a.132.1.1
Probab=23.55 E-value=1.2e+02 Score=21.26 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=27.4
Q ss_pred hhhhcCcCCCCchhhHHHHHHHHHHh---cHHHHHHHHHHcCc
Q 034889 6 EFWDTAPHYGGRKGKIWDALRAAAEA---DLSLAQAIVDSAGV 45 (80)
Q Consensus 6 EFwdT~~~~~Gr~~EIW~aLraA~e~---dl~tAq~ildaA~i 45 (80)
.||+--. .++.++.|+..|++++. |-+..+.||++|..
T Consensus 154 ~fy~f~~--~~d~~~~k~~fr~~Ld~l~l~~~e~~~ii~eA~~ 194 (240)
T 1we1_A 154 AFYEFAD--IDDEKAFKNTYRQAMNDLPIDQATAERIVDEAND 194 (240)
T ss_dssp GGGCCTT--CSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred hhcccCC--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4665441 24554799999999985 78888889988754
No 77
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=23.46 E-value=41 Score=21.64 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=14.2
Q ss_pred hcHHHHHHHHHHcCce
Q 034889 31 ADLSLAQAIVDSAGVI 46 (80)
Q Consensus 31 ~dl~tAq~ildaA~it 46 (80)
.|.+.|+.||+.+|+-
T Consensus 75 ed~~~Ar~LL~~~~~~ 90 (97)
T 2hfv_A 75 DDLAGARRLLTDAGLA 90 (97)
T ss_dssp GGHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHcCCc
Confidence 4899999999999983
No 78
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain, erythrocyte binding, merozoite SU malaria, cell adhesion; 2.11A {Plasmodium falciparum}
Probab=23.41 E-value=19 Score=27.49 Aligned_cols=23 Identities=17% Similarity=0.666 Sum_probs=17.9
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAAAE 30 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA~e 30 (80)
+.|+.+|+.- |+ +||.|+-=++.
T Consensus 183 ~~re~WW~~N-----r~-~VWkAmtC~~~ 205 (339)
T 3vuv_A 183 KDAKKWWTEN-----RH-HVWEAMMCGYQ 205 (339)
T ss_dssp CSHHHHHHHH-----HH-HHHHHHHHHHH
T ss_pred hhHHHHHHHH-----HH-HHHHHhccccc
Confidence 5689999865 66 99999976653
No 79
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=23.37 E-value=1.5e+02 Score=22.13 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=33.7
Q ss_pred chhhHHHHHHHHHHh------------------cHHHHHHHHHHcC----ceeecCCeeeeeccCCCccccCceeeeCCC
Q 034889 17 RKGKIWDALRAAAEA------------------DLSLAQAIVDSAG----VIVQSADLTICYDERGAKYELPKYVLSEPT 74 (80)
Q Consensus 17 r~~EIW~aLraA~e~------------------dl~tAq~ildaA~----itlp~g~L~~~YDe~G~~Y~lP~~v~s~P~ 74 (80)
++ ++|+.++..++. -++.|+.-+..+| |.+-.+|+...- ....|+ .|+++|-
T Consensus 243 ~~-~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~--~~~~fD---~Iv~NPP 316 (393)
T 3k0b_A 243 PK-QVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQ--TEDEYG---VVVANPP 316 (393)
T ss_dssp CH-HHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCC--CCCCSC---EEEECCC
T ss_pred CH-HHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCC--CCCCCC---EEEECCC
Confidence 45 999999987652 3788888888887 456677765211 112333 4777764
No 80
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=23.28 E-value=85 Score=19.00 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHcCceeecC---C--------eeeeeccCCCccc
Q 034889 32 DLSLAQAIVDSAGVIVQSA---D--------LTICYDERGAKYE 64 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g---~--------L~~~YDe~G~~Y~ 64 (80)
|++.+..-|.++|+++..+ . ..-+.|-.||...
T Consensus 99 dv~~~~~~l~~~G~~~~~~~p~~~~~g~~~~~~~~~DPdG~~ie 142 (146)
T 3ct8_A 99 KVDELTQKLKERGDPILYEDRHPFAGGPNHYAVFCEDPNRIKVE 142 (146)
T ss_dssp HHHHHHHHHHHHTCCBCCTTTTTCTTCTTCCEEEEECTTCCEEE
T ss_pred HHHHHHHHHHHcCCccccCCCccccCCCceEEEEEECCCCCEEE
Confidence 7888888999999987442 1 1245577776654
No 81
>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A
Probab=22.85 E-value=1.2e+02 Score=17.49 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHcCceee
Q 034889 32 DLSLAQAIVDSAGVIVQ 48 (80)
Q Consensus 32 dl~tAq~ildaA~itlp 48 (80)
|++.+..-|.++|+++.
T Consensus 98 d~~~~~~~l~~~G~~~~ 114 (148)
T 1jc4_A 98 DIDAVSATLRERGVQLL 114 (148)
T ss_dssp CHHHHHHHHHHHTCCBS
T ss_pred CHHHHHHHHHHCCCeec
Confidence 88999999999999865
No 82
>3vw9_A Lactoylglutathione lyase; glyoxalase, lyase-lyase inhibitor complex; HET: EPE HPJ; 1.47A {Homo sapiens} PDB: 1qip_A* 1fro_A* 1qin_A* 1bh5_A* 2za0_A*
Probab=22.76 E-value=98 Score=19.15 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHcCceeecC-------CeeeeeccCCCccc
Q 034889 32 DLSLAQAIVDSAGVIVQSA-------DLTICYDERGAKYE 64 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g-------~L~~~YDe~G~~Y~ 64 (80)
|++.+..-|.++|+++-.+ .+.-+.|-.|+...
T Consensus 137 dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ie 176 (187)
T 3vw9_A 137 DVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIE 176 (187)
T ss_dssp CHHHHHHHHHHTTCCEEECTTSSSSTTCEEEECTTCCEEE
T ss_pred CHHHHHHHHHHCCCeEeeCCccCCcceEEEEECCCCCEEE
Confidence 8899999999999987543 22356677777665
No 83
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}
Probab=22.67 E-value=94 Score=18.27 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHcCceeecC--------CeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQSA--------DLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g--------~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++..+ ...-+.|-.||...|
T Consensus 88 dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel 129 (141)
T 2rbb_A 88 AVDKLVPVAIAAGATLIKAPYETYYHWYQAVLLDPERNVFRI 129 (141)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTSEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHcCCeEecCccccCCccEEEEEECCCCCEEEE
Confidence 5888889999999886321 112456777776653
No 84
>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853, MCSG, protein structur initiative, midwest center for structural genomics; 1.50A {Rhodococcus SP}
Probab=22.53 E-value=80 Score=19.30 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=23.8
Q ss_pred hcHHHHHHHHHHcCceeec--------CCeeeeeccCCCcccc
Q 034889 31 ADLSLAQAIVDSAGVIVQS--------ADLTICYDERGAKYEL 65 (80)
Q Consensus 31 ~dl~tAq~ildaA~itlp~--------g~L~~~YDe~G~~Y~l 65 (80)
.|++.+.+-|.++|+++-. |...-+.|-.||...|
T Consensus 99 ~dld~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~DPdG~~iel 141 (148)
T 2r6u_A 99 ESIESALERIESLGGKTVTGRTPVGNMGFAAYFTDSEGNVVGL 141 (148)
T ss_dssp SCHHHHHHHHHHTTCEEEEEEEEETTTEEEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHHHcCCeEecCCeecCCCEEEEEEECCCCCEEEE
Confidence 3899999999999998732 2222456767766553
No 85
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=22.43 E-value=1.6e+02 Score=22.02 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHHHh------------------cHHHHHHHHHHcC----ceeecCCeeeeeccCCCccccCceeeeCCC
Q 034889 17 RKGKIWDALRAAAEA------------------DLSLAQAIVDSAG----VIVQSADLTICYDERGAKYELPKYVLSEPT 74 (80)
Q Consensus 17 r~~EIW~aLraA~e~------------------dl~tAq~ildaA~----itlp~g~L~~~YDe~G~~Y~lP~~v~s~P~ 74 (80)
++ ++|+.++..++. -++.|+.-+..+| |.+-.+|+...- . ...|+ .|++||-
T Consensus 236 ~~-~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~-~-~~~fD---~Iv~NPP 309 (384)
T 3ldg_A 236 DE-ALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFK-T-NKING---VLISNPP 309 (384)
T ss_dssp CH-HHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCC-C-CCCSC---EEEECCC
T ss_pred CH-HHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCC-c-cCCcC---EEEECCc
Confidence 55 999999987652 3888888888888 456777765211 1 11333 4777763
No 86
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*
Probab=22.32 E-value=60 Score=22.24 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcHHHHHHHHHHcC
Q 034889 22 WDALRAAAEADLSLAQAIVDSAG 44 (80)
Q Consensus 22 W~aLraA~e~dl~tAq~ildaA~ 44 (80)
-++|++.++.|.+.|+.+|+...
T Consensus 129 le~L~~qI~~D~~~ar~~l~~~~ 151 (163)
T 1n08_A 129 LDKLIEDIHTDIRVALNSMDRPS 151 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 37899999999999999996543
No 87
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Probab=21.74 E-value=35 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=14.6
Q ss_pred hhhhcCcCCCCchhhHHHHHHH
Q 034889 6 EFWDTAPHYGGRKGKIWDALRA 27 (80)
Q Consensus 6 EFwdT~~~~~Gr~~EIW~aLra 27 (80)
-||||++.|+..+ .|=.+||.
T Consensus 53 n~~DTA~~YgsE~-~vG~~l~~ 73 (290)
T 4gie_A 53 RHIDTAYIYSNER-GVGQGIRE 73 (290)
T ss_dssp CEEECCGGGTCHH-HHHHHHHH
T ss_pred CEEecccccCCHH-HHHHHHHh
Confidence 3899999998555 55555554
No 88
>3m2o_A Glyoxalase/bleomycin resistance protein; unknown function, structural genomics, putative glyoxylase/B resistance protein; HET: PG4; 1.35A {Rhodopseudomonas palustris} PDB: 3vcx_A*
Probab=21.40 E-value=78 Score=19.58 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHcCceee-------cC-CeeeeeccCCCcccc
Q 034889 32 DLSLAQAIVDSAGVIVQ-------SA-DLTICYDERGAKYEL 65 (80)
Q Consensus 32 dl~tAq~ildaA~itlp-------~g-~L~~~YDe~G~~Y~l 65 (80)
|++.+..-|.++|+++- .| ....+.|-.||...|
T Consensus 100 dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel 141 (164)
T 3m2o_A 100 DPDREYARLQQAGLPILLTLRDEDFGQRHFITADPNGVLIDI 141 (164)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEEC---CEEEEEECTTCCEEEE
T ss_pred CHHHHHHHHHHCCCceecCccccCCCcEEEEEECCCCCEEEE
Confidence 78888888999998762 23 223678888888765
No 89
>2kjz_A ATC0852; protein of unknown function, dimer, structural genomics, PSI protein structure initiative; NMR {Agrobacterium tumefaciens}
Probab=21.20 E-value=52 Score=20.02 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHcCceeecCC-------eeeeeccCCCccc
Q 034889 32 DLSLAQAIVDSAGVIVQSAD-------LTICYDERGAKYE 64 (80)
Q Consensus 32 dl~tAq~ildaA~itlp~g~-------L~~~YDe~G~~Y~ 64 (80)
|++.+..-|.++|+++-.+- ...+.|-.|+...
T Consensus 99 dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdG~~ie 138 (144)
T 2kjz_A 99 QVDETFAGWKASGVAMLQQPAKMEFGYTFTAADPDSHRLR 138 (144)
T ss_dssp HHHHHHHHHHHTTCCCCSCCEEETTEEEEEECCTTCCEEE
T ss_pred HHHHHHHHHHHCCCeEecCceecCCceEEEEECCCCCEEE
Confidence 67888888889998864321 1234566665544
No 90
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.12 E-value=35 Score=21.11 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred ecCCeeeeeccCCCcc
Q 034889 48 QSADLTICYDERGAKY 63 (80)
Q Consensus 48 p~g~L~~~YDe~G~~Y 63 (80)
-.|.|+|+.|.+|.+-
T Consensus 47 ~~g~ltGViDDRGKfI 62 (72)
T 1wi9_A 47 TEGTLTGVIDDRGKFI 62 (72)
T ss_dssp HHSSSCEEECTTCCEE
T ss_pred HCCCeEEEEeCCCCEE
Confidence 3689999999999764
No 91
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=20.83 E-value=34 Score=18.49 Aligned_cols=7 Identities=43% Similarity=0.302 Sum_probs=5.5
Q ss_pred chhhHHHH
Q 034889 17 RKGKIWDA 24 (80)
Q Consensus 17 r~~EIW~a 24 (80)
|+ |||-|
T Consensus 3 rP-EiwIA 9 (33)
T 1pq1_B 3 RP-EIRIA 9 (33)
T ss_dssp CH-HHHHH
T ss_pred Ch-HHHHH
Confidence 57 99965
No 92
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*
Probab=20.13 E-value=57 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcHHHHHHHHHHc
Q 034889 22 WDALRAAAEADLSLAQAIVDSA 43 (80)
Q Consensus 22 W~aLraA~e~dl~tAq~ildaA 43 (80)
-++|++.++.|.+.|+.+|+..
T Consensus 111 le~L~~qI~~D~~~ar~~l~~~ 132 (147)
T 1nb0_A 111 LESLISAIQGDIEEAKKRLELP 132 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 3689999999999999998643
No 93
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion, HOST, malaria, disease, glycophorin, glycan, sialic acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP: a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Probab=20.08 E-value=26 Score=28.82 Aligned_cols=21 Identities=29% Similarity=0.945 Sum_probs=16.3
Q ss_pred hhhhhhhhcCcCCCCchhhHHHHHHHH
Q 034889 2 QLRDEFWDTAPHYGGRKGKIWDALRAA 28 (80)
Q Consensus 2 ~~R~EFwdT~~~~~Gr~~EIW~aLraA 28 (80)
+.|+++|+.- |+ +||.|+--+
T Consensus 138 ~lRedWW~~N-----r~-~vWkamtC~ 158 (602)
T 1zro_A 138 NFRKKWWNEF-----RE-KLWEAMLSE 158 (602)
T ss_dssp HHHHHHHHHH-----HH-HHHHHHHTT
T ss_pred hhHHHHHHHH-----HH-hhhhhhccC
Confidence 5699999865 66 999998643
Done!