Your job contains 1 sequence.
>034890
MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMV
VIRGNSVVTVEALEPVSKSQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034890
(80 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 373 2.2e-34 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 372 2.8e-34 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 238 4.4e-20 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 235 9.2e-20 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 232 1.9e-19 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 232 1.9e-19 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 232 1.9e-19 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 232 1.9e-19 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 220 3.6e-18 1
UNIPROTKB|A8MWD9 - symbol:A8MWD9 "Small nuclear ribonucle... 215 1.2e-17 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 212 2.5e-17 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 210 4.1e-17 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 205 1.4e-16 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 198 7.7e-16 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 189 6.9e-15 1
SGD|S000002965 - symbol:SMX2 "Core Sm protein Sm G" speci... 189 6.9e-15 1
UNIPROTKB|G4NLE3 - symbol:MGG_02938 "Uncharacterized prot... 160 8.2e-12 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 143 5.2e-10 1
ASPGD|ASPL0000056132 - symbol:AN0767 species:162425 "Emer... 142 6.6e-10 1
TAIR|locus:2056825 - symbol:EMB2816 "AT2G03870" species:3... 131 9.7e-09 1
TAIR|locus:2087522 - symbol:LSM1B "SM-like 1B" species:37... 127 2.6e-08 1
FB|FBgn0261067 - symbol:LSm1 species:7227 "Drosophila mel... 125 4.2e-08 1
GENEDB_PFALCIPARUM|PFL0460w - symbol:PFL0460w "u6 snRNA-a... 125 4.2e-08 1
UNIPROTKB|Q8I5V6 - symbol:PFL0460w "Lsm7 homologue, putat... 125 4.2e-08 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 125 4.2e-08 1
DICTYBASE|DDB_G0289499 - symbol:lsm7 "putative U6 small n... 124 5.3e-08 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 124 5.3e-08 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 124 5.3e-08 1
ZFIN|ZDB-GENE-030131-8284 - symbol:lsm7 "LSM7 homolog, U6... 124 5.3e-08 1
UNIPROTKB|Q9UK45 - symbol:LSM7 "U6 snRNA-associated Sm-li... 123 6.8e-08 1
TAIR|locus:2011246 - symbol:LSM1A "SM-like 1A" species:37... 120 1.4e-07 1
FB|FBgn0261068 - symbol:LSm7 species:7227 "Drosophila mel... 119 1.8e-07 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 115 4.8e-07 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 115 4.8e-07 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 115 4.8e-07 1
POMBASE|SPBC11G11.06c - symbol:sme1 "Sm snRNP core protei... 115 4.8e-07 1
UNIPROTKB|G4N0M9 - symbol:MGG_16920 "Uncharacterized prot... 83 5.6e-07 2
DICTYBASE|DDB_G0279837 - symbol:lsm1 "LSM (like-Sm) domai... 114 6.1e-07 1
POMBASE|SPAC2F3.17c - symbol:lsm6 "U6 snRNP-associated pr... 109 2.1e-06 1
UNIPROTKB|Q5E9Z8 - symbol:LSM1 "U6 snRNA-associated Sm-li... 106 4.3e-06 1
UNIPROTKB|E2R7S6 - symbol:LSM1 "Uncharacterized protein" ... 106 4.3e-06 1
UNIPROTKB|O15116 - symbol:LSM1 "U6 snRNA-associated Sm-li... 106 4.3e-06 1
UNIPROTKB|I3LCU8 - symbol:LSM1 "Uncharacterized protein" ... 106 4.3e-06 1
MGI|MGI:1914457 - symbol:Lsm1 "LSM1 homolog, U6 small nuc... 106 4.3e-06 1
RGD|1304967 - symbol:Lsm1 "LSM1 homolog, U6 small nuclear... 106 4.3e-06 1
GENEDB_PFALCIPARUM|MAL8P1.9 - symbol:MAL8P1.9 "u6 snRNA-a... 105 5.5e-06 1
UNIPROTKB|C0H4Y9 - symbol:MAL8P1.9 "U6 snRNA-associated S... 105 5.5e-06 1
POMBASE|SPBC3D6.08c - symbol:lsm1 "mRNA decapping complex... 105 5.5e-06 1
ZFIN|ZDB-GENE-040801-68 - symbol:lsm1 "LSM1 homolog, U6 s... 105 5.5e-06 1
UNIPROTKB|P62312 - symbol:LSM6 "U6 snRNA-associated Sm-li... 104 7.0e-06 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 104 7.0e-06 1
MGI|MGI:1925901 - symbol:Lsm6 "LSM6 homolog, U6 small nuc... 104 7.0e-06 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 104 7.0e-06 1
WB|WBGene00003080 - symbol:lsm-6 species:6239 "Caenorhabd... 103 9.0e-06 1
ZFIN|ZDB-GENE-040625-50 - symbol:lsm6 "LSM6 homolog, U6 s... 103 9.0e-06 1
ASPGD|ASPL0000007577 - symbol:AN6735 species:162425 "Emer... 102 1.1e-05 1
SGD|S000003660 - symbol:LSM1 "Lsm (Like Sm) protein" spec... 102 1.1e-05 1
WB|WBGene00004919 - symbol:snr-6 species:6239 "Caenorhabd... 101 1.5e-05 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 100 1.9e-05 1
TAIR|locus:2043969 - symbol:LSM6B "AT2G43810" species:370... 99 2.4e-05 1
WB|WBGene00003076 - symbol:lsm-1 species:6239 "Caenorhabd... 99 2.4e-05 1
FB|FBgn0035271 - symbol:CG2021 species:7227 "Drosophila m... 98 3.0e-05 1
FB|FBgn0261790 - symbol:SmE "Small ribonucleoprotein part... 98 3.0e-05 1
RGD|2318883 - symbol:LOC100362099 "small nuclear ribonucl... 98 3.0e-05 1
ZFIN|ZDB-GENE-040426-1112 - symbol:snrpe "small nuclear r... 98 3.0e-05 1
UNIPROTKB|P62303 - symbol:SNRPE "Small nuclear ribonucleo... 97 3.9e-05 1
UNIPROTKB|A4FUI2 - symbol:SNRPE "Small nuclear ribonucleo... 97 3.9e-05 1
UNIPROTKB|P62304 - symbol:SNRPE "Small nuclear ribonucleo... 97 3.9e-05 1
UNIPROTKB|A1XQR9 - symbol:SNRPE "Small nuclear ribonucleo... 97 3.9e-05 1
UNIPROTKB|I3LDW9 - symbol:SNRPE "Small nuclear ribonucleo... 97 3.9e-05 1
MGI|MGI:98346 - symbol:Snrpe "small nuclear ribonucleopro... 97 3.9e-05 1
RGD|2321675 - symbol:Snrpe "small nuclear ribonucleoprote... 97 3.9e-05 1
DICTYBASE|DDB_G0272320 - symbol:snrpb "putative small nuc... 102 4.6e-05 1
RGD|2319339 - symbol:LOC100361838 "small nuclear ribonucl... 95 6.3e-05 1
GENEDB_PFALCIPARUM|MAL13P1.253 - symbol:MAL13P1.253 "smal... 94 8.1e-05 1
UNIPROTKB|Q8IDJ7 - symbol:MAL13P1.253 "Small nuclear ribo... 94 8.1e-05 1
ASPGD|ASPL0000075585 - symbol:AN10561 species:162425 "Eme... 64 8.6e-05 2
SGD|S000000831 - symbol:SMB1 "Core Sm protein Sm B" speci... 72 8.8e-05 2
DICTYBASE|DDB_G0302414 - symbol:snrpE "small nuclear ribo... 93 0.00010 1
UNIPROTKB|F1ME11 - symbol:LOC100296197 "Uncharacterized p... 92 0.00013 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 92 0.00013 1
UNIPROTKB|J9P098 - symbol:LOC100855941 "Uncharacterized p... 91 0.00017 1
UNIPROTKB|J9PAB3 - symbol:J9PAB3 "Uncharacterized protein... 91 0.00017 1
UNIPROTKB|E1BHK8 - symbol:SNRPE "Small nuclear ribonucleo... 90 0.00021 1
UNIPROTKB|Q2HJH0 - symbol:LSM5 "U6 snRNA-associated Sm-li... 90 0.00021 1
UNIPROTKB|Q9Y4Y9 - symbol:LSM5 "U6 snRNA-associated Sm-li... 90 0.00021 1
MGI|MGI:1913623 - symbol:Lsm5 "LSM5 homolog, U6 small nuc... 90 0.00021 1
POMBASE|SPBC3E7.14 - symbol:smf1 "Sm snRNP core protein S... 90 0.00021 1
SGD|S000000614 - symbol:MAK31 "Non-catalytic subunit of N... 90 0.00021 1
WB|WBGene00003079 - symbol:lsm-5 species:6239 "Caenorhabd... 90 0.00021 1
UNIPROTKB|O18694 - symbol:lsm-5 "Protein LSM-5" species:6... 90 0.00021 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 88 0.00035 1
UNIPROTKB|A6NHK2 - symbol:SNRPE "Small nuclear ribonucleo... 88 0.00035 1
UNIPROTKB|A4RQ29 - symbol:LSM6 "U6 snRNA-associated Sm-li... 88 0.00035 1
TAIR|locus:2053989 - symbol:AT2G18740 "AT2G18740" species... 88 0.00035 1
FB|FBgn0034564 - symbol:CG9344 species:7227 "Drosophila m... 87 0.00045 1
UNIPROTKB|G4MST0 - symbol:MGG_04539 "Uncharacterized prot... 87 0.00045 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 87 0.00045 1
ZFIN|ZDB-GENE-070822-23 - symbol:zgc:171959 "zgc:171959" ... 87 0.00045 1
UNIPROTKB|J3QLE5 - symbol:SNRPN "Small nuclear ribonucleo... 88 0.00051 1
WARNING: Descriptions of 16 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 71/79 (89%), Positives = 76/79 (96%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMV 60
MSRSGQPPDLKKYMDKKLQIKLNANRM+ GTLRGFDQFMNLV+DNTVEVNGN+K DIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 61 VIRGNSVVTVEALEPVSKS 79
VIRGNS+VTVEALEPV +S
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 71/79 (89%), Positives = 77/79 (97%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMV 60
MSRSGQPPDLKKYMDKKLQIKLNANRM+VGTLRGFDQFMNLV+DNTVEVNG++K DIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMV 60
Query: 61 VIRGNSVVTVEALEPVSKS 79
VIRGNS+VTVEALEPV +S
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 47/77 (61%), Positives = 61/77 (79%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGM 59
MS++ PP++KKYMDK++ +KLN R + G LRGFD FMN+V+D+TVE N KN+IGM
Sbjct: 1 MSKA-HPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS+V VEAL+ V
Sbjct: 60 VVIRGNSIVMVEALDRV 76
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGM 59
MS + PP+LKK+MDKKL +KLN R + G LRGFD FMNLV+D+T+E+ G + N IGM
Sbjct: 1 MSEA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGM 59
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGM
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGM 59
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGM
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGM 59
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGM
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGM 59
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGM
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 41/77 (53%), Positives = 59/77 (76%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMV 60
+ ++G D +K+M+K+LQI LN NR +VG LRG+D FMNLV+DNT+E+ +E+ DIG+V
Sbjct: 5 VGKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQIDIGVV 64
Query: 61 VIRGNSVVTVEALEPVS 77
VIRGNS+ E L+ V+
Sbjct: 65 VIRGNSISYWECLDKVN 81
>UNIPROTKB|A8MWD9 [details] [associations]
symbol:A8MWD9 "Small nuclear ribonucleoprotein G-like
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC012318 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 EMBL:CK005235
IPI:IPI00745343 UniGene:Hs.631639 ProteinModelPortal:A8MWD9
SMR:A8MWD9 STRING:A8MWD9 PaxDb:A8MWD9 PRIDE:A8MWD9
neXtProt:NX_A8MWD9 InParanoid:A8MWD9 OrthoDB:EOG4BRWND
ArrayExpress:A8MWD9 Bgee:A8MWD9 Genevestigator:A8MWD9
Uniprot:A8MWD9
Length = 76
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 46/78 (58%), Positives = 58/78 (74%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIG 58
MS++ PP+LKK+ DKK +KLN R + G LRGFD FMNLVID VE+ +G +KN IG
Sbjct: 1 MSKA-HPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IG 58
Query: 59 MVVIRGNSVVTVEALEPV 76
MV IRGNS++ +EALE V
Sbjct: 59 MVEIRGNSIIMLEALERV 76
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 45/79 (56%), Positives = 57/79 (72%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIG 58
MS++ PP+LKKYMDK++ +KLN NR + G LRGFD FMN+VID VE +G N +G
Sbjct: 1 MSKT-HPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVN-LG 58
Query: 59 MVVIRGNSVVTVEALEPVS 77
M VIRGNSVV +E E +S
Sbjct: 59 MTVIRGNSVVIMEPKERIS 77
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 41/72 (56%), Positives = 55/72 (76%)
Query: 8 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNS 66
P+LKKYM+K++ +LN NR ++G LRG+D FMN+V+D E G EK IGM+VIRGNS
Sbjct: 6 PELKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEAFEEKPGGEKVAIGMIVIRGNS 65
Query: 67 VVTVEALEPVSK 78
VV +EALE +S+
Sbjct: 66 VVMLEALERISE 77
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 41/71 (57%), Positives = 54/71 (76%)
Query: 8 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNS 66
PDL K +DKKL IKLN NR + G LRGFD FMN+ + +TVEV + EK +IGMV+IRGNS
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNS 68
Query: 67 VVTVEALEPVS 77
++ +E LE ++
Sbjct: 69 ILLMEPLESMA 79
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 39/74 (52%), Positives = 57/74 (77%)
Query: 5 GQP-PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVI 62
G P P+LKKY+DKK+ ++LN +R +VG +RG+D F+N+V+++ E +G EK IG VVI
Sbjct: 2 GPPQPELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEEKDGGEKVKIGTVVI 61
Query: 63 RGNSVVTVEALEPV 76
RGNSVV +EA+E +
Sbjct: 62 RGNSVVMLEAMERI 75
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 37/79 (46%), Positives = 61/79 (77%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIG 58
MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E V+G EK IG
Sbjct: 1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIG 58
Query: 59 MVVIRGNSVVTVEALEPVS 77
V IRGNSV+ +E L+ ++
Sbjct: 59 SVAIRGNSVIMIETLDKMT 77
>SGD|S000002965 [details] [associations]
symbol:SMX2 "Core Sm protein Sm G" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] SGD:S000002965 INTERPRO:IPR001163 EMBL:D50617
EMBL:BK006940 GO:GO:0005682 GO:GO:0003723 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z46255 GO:GO:0046540
GO:GO:0071004 EMBL:M20880 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000223546
KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
OrthoDB:EOG4XWK7N EMBL:L31794 EMBL:AY558463 PIR:S48322
RefSeq:NP_116636.1 ProteinModelPortal:P40204 SMR:P40204
DIP:DIP-6683N IntAct:P40204 MINT:MINT-613464 STRING:P40204
PaxDb:P40204 EnsemblFungi:YFL017W-A GeneID:850528
KEGG:sce:YFL017W-A CYGD:YFL017w-a NextBio:966271
Genevestigator:P40204 GermOnline:YFL017W-A Uniprot:P40204
Length = 77
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 33/73 (45%), Positives = 56/73 (76%)
Query: 8 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNE---KNDIGM-VVIR 63
P+LKKYMDKK+ + +N +R + G LRG+D F+N+V+D+ +E+NG + + +G+ VIR
Sbjct: 5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIR 64
Query: 64 GNSVVTVEALEPV 76
GNS++++EAL+ +
Sbjct: 65 GNSIISLEALDAI 77
>UNIPROTKB|G4NLE3 [details] [associations]
symbol:MGG_02938 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001237 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
RefSeq:XP_003720770.1 ProteinModelPortal:G4NLE3
EnsemblFungi:MGG_02938T0 GeneID:2682491 KEGG:mgr:MGG_02938
Uniprot:G4NLE3
Length = 146
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV----NGNEKN-DIGMVVIR 63
DL KYMDK++Q+K N R ++GTL+G+D MNLV+D E GNE + +G+VV+R
Sbjct: 60 DLAKYMDKEVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMRDEEGNESSRPLGLVVVR 119
Query: 64 GNSVVTVEALEPVSKSQ 80
G +V A+ P S+
Sbjct: 120 GTLLV---AISPTDGSE 133
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKND---------- 56
DL KY D K+++KL ++++G L+G+DQ MNLV+D+TVE N +++N+
Sbjct: 29 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 88
Query: 57 IGMVVIRGNSVVTVEALE 74
+G+ VIRG +V++ + E
Sbjct: 89 LGLTVIRGTILVSLSSAE 106
>ASPGD|ASPL0000056132 [details] [associations]
symbol:AN0767 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACD01000012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
RefSeq:XP_658371.1 ProteinModelPortal:Q5BFB3 STRING:Q5BFB3
EnsemblFungi:CADANIAT00001898 GeneID:2876542 KEGG:ani:AN0767.2
Uniprot:Q5BFB3
Length = 136
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV----NGNEKND-IGMVVIR 63
DL KYMDK++++K N R + G L+G+DQ MNLV+D+ E GNE +G++V R
Sbjct: 52 DLTKYMDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMRDDEGNETTRALGLIVAR 111
Query: 64 GNSVVTV 70
G +V +
Sbjct: 112 GTLIVLI 118
>TAIR|locus:2056825 [details] [associations]
symbol:EMB2816 "AT2G03870" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GenomeReviews:CT485783_GR InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O29386 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
EMBL:AC007196 EMBL:BT003087 EMBL:AK227358 IPI:IPI00526989
PIR:B84453 RefSeq:NP_178480.1 RefSeq:NP_849931.1 UniGene:At.41365
ProteinModelPortal:Q9SI54 SMR:Q9SI54 IntAct:Q9SI54 STRING:Q9SI54
PaxDb:Q9SI54 PRIDE:Q9SI54 ProMEX:Q9SI54 DNASU:814913
EnsemblPlants:AT2G03870.1 EnsemblPlants:AT2G03870.2 GeneID:814913
KEGG:ath:AT2G03870 TAIR:At2g03870 InParanoid:Q9SI54
PhylomeDB:Q9SI54 ProtClustDB:CLSN2683856 ArrayExpress:Q9SI54
Genevestigator:Q9SI54 Uniprot:Q9SI54
Length = 99
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV---------NGNEKNDIGM 59
DL K++DK +Q+KL R + GTL+G+DQ +NLV+D VE ++ +G+
Sbjct: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGL 69
Query: 60 VVIRGNSVVTV 70
+V RG +V+ V
Sbjct: 70 IVCRGTAVMLV 80
>TAIR|locus:2087522 [details] [associations]
symbol:LSM1B "SM-like 1B" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223544 KO:K12620 eggNOG:COG1958
HSSP:Q8ZYG5 EMBL:AY084768 EMBL:BT002795 EMBL:BT004340
IPI:IPI00537844 RefSeq:NP_566476.1 RefSeq:NP_850580.1
UniGene:At.39294 ProteinModelPortal:Q8LFL8 SMR:Q8LFL8 IntAct:Q8LFL8
STRING:Q8LFL8 PaxDb:Q8LFL8 PRIDE:Q8LFL8 EnsemblPlants:AT3G14080.1
EnsemblPlants:AT3G14080.2 GeneID:820624 KEGG:ath:AT3G14080
TAIR:At3g14080 InParanoid:Q8LFL8 OMA:TEREELP PhylomeDB:Q8LFL8
ProtClustDB:CLSN2687863 ArrayExpress:Q8LFL8 Genevestigator:Q8LFL8
Uniprot:Q8LFL8
Length = 128
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDI--GMVVIRGN 65
L Y+D+KL + L R ++GTLR FDQF N V++ E + G + DI G+ VIRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGE 74
Query: 66 SVVTVEALE 74
+VV + L+
Sbjct: 75 NVVLIGELD 83
>FB|FBgn0261067 [details] [associations]
symbol:LSm1 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0005681 GO:GO:0000398 GO:GO:0033962 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620
OMA:IERIHVG HSSP:Q8ZYG5 EMBL:BT022249 RefSeq:NP_611559.1
UniGene:Dm.26990 SMR:Q9W2K2 IntAct:Q9W2K2 MINT:MINT-289058
STRING:Q9W2K2 EnsemblMetazoa:FBtr0071628 GeneID:37413
KEGG:dme:Dmel_CG4279 UCSC:CG4279-RA FlyBase:FBgn0261067
InParanoid:Q9W2K2 OrthoDB:EOG4GTHWB GenomeRNAi:37413 NextBio:803505
Uniprot:Q9W2K2
Length = 137
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGN 65
L + +DKKL + L R ++G LR DQF NLV+ T+E ++ GNE DI G+ +IRG
Sbjct: 13 LLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFIIRGE 72
Query: 66 SVVTVEALE 74
+VV + ++
Sbjct: 73 NVVLLGEID 81
>GENEDB_PFALCIPARUM|PFL0460w [details] [associations]
symbol:PFL0460w "u6 snRNA-associated Sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005634
"nucleus" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681
EMBL:AE014188 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 RefSeq:XP_001350501.1 HSSP:O29885
ProteinModelPortal:Q8I5V6 PRIDE:Q8I5V6
EnsemblProtists:PFL0460w:mRNA GeneID:811145 KEGG:pfa:PFL0460w
EuPathDB:PlasmoDB:PF3D7_1209200 ProtClustDB:CLSZ2431821
Uniprot:Q8I5V6
Length = 108
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---------VNGNEKNDIGM 59
D+KK+M++K+++K + R +VGTL G D NLV+D T E V ++ IG+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGL 79
Query: 60 VVIRGNSVVTVEALE 74
+V RG SV + +E
Sbjct: 80 IVARGTSVALITPVE 94
>UNIPROTKB|Q8I5V6 [details] [associations]
symbol:PFL0460w "Lsm7 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0005681 EMBL:AE014188 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
RefSeq:XP_001350501.1 HSSP:O29885 ProteinModelPortal:Q8I5V6
PRIDE:Q8I5V6 EnsemblProtists:PFL0460w:mRNA GeneID:811145
KEGG:pfa:PFL0460w EuPathDB:PlasmoDB:PF3D7_1209200
ProtClustDB:CLSZ2431821 Uniprot:Q8I5V6
Length = 108
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---------VNGNEKNDIGM 59
D+KK+M++K+++K + R +VGTL G D NLV+D T E V ++ IG+
Sbjct: 20 DIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKTRSIGL 79
Query: 60 VVIRGNSVVTVEALE 74
+V RG SV + +E
Sbjct: 80 IVARGTSVALITPVE 94
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKND--------IGMV 60
DL +Y D+++Q R I G L+GFDQ MNLV+D+ E N ++ +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 61 VIRGNSVVTVEALE 74
V+RG ++V + ++
Sbjct: 87 VVRGTTLVLIAPMD 100
>DICTYBASE|DDB_G0289499 [details] [associations]
symbol:lsm7 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0289499
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000141 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_636181.1 HSSP:O29386 ProteinModelPortal:Q54HF6
STRING:Q54HF6 EnsemblProtists:DDB0233196 GeneID:8627168
KEGG:ddi:DDB_G0289499 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 Uniprot:Q54HF6
Length = 97
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---------VNGNEKNDIGM 59
DL+K++ K++ +K R + G L+G+DQ +N+ +D T E + +EK +G+
Sbjct: 14 DLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGL 73
Query: 60 VVIRGNSVVTV---EALEPV 76
VV RG+SV+ V E EP+
Sbjct: 74 VVCRGSSVMMVCPTEGCEPI 93
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---------VNGNEKNDIGM 59
DL +++DK++++K R G LRGFDQ +N+V+D+ E V G+E +G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 60 VVIRGNSVVTV---EALEPVS 77
+V RG ++ V + LE ++
Sbjct: 75 IVARGTAITVVSPADGLEQIA 95
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---------VNGNEKNDIGM 59
DL +++DK++++K R G LRGFDQ +N+V+D+ E V G+E +G+
Sbjct: 15 DLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGL 74
Query: 60 VVIRGNSVVTV---EALEPVS 77
+V RG ++ V + LE ++
Sbjct: 75 IVARGTAITVVSPADGLEQIA 95
>ZFIN|ZDB-GENE-030131-8284 [details] [associations]
symbol:lsm7 "LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-030131-8284 EMBL:BX908398 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 HOVERGEN:HBG000513 OrthoDB:EOG4GB77F
GeneTree:ENSGT00510000047872 EMBL:BC133957 IPI:IPI00610946
RefSeq:NP_001041471.1 UniGene:Dr.10033 STRING:A4FVI7
Ensembl:ENSDART00000081188 GeneID:573047 KEGG:dre:573047
InParanoid:A4FVI7 NextBio:20891033 Uniprot:A4FVI7
Length = 103
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGN---------EKNDIGM 59
DL KY+DK +++K R G L+GFD +NLV+D T+E + + +G+
Sbjct: 14 DLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 60 VVIRGNSVVTV 70
VV RG SVV +
Sbjct: 74 VVCRGTSVVLI 84
>UNIPROTKB|Q9UK45 [details] [associations]
symbol:LSM7 "U6 snRNA-associated Sm-like protein LSm7"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182293 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0030529 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 EMBL:AC005258 EMBL:BC018621
IPI:IPI00007163 RefSeq:NP_057283.1 UniGene:Hs.512610
ProteinModelPortal:Q9UK45 SMR:Q9UK45 DIP:DIP-31129N IntAct:Q9UK45
MINT:MINT-1036641 STRING:Q9UK45 PhosphoSite:Q9UK45 DMDM:10720075
PaxDb:Q9UK45 PRIDE:Q9UK45 DNASU:51690 Ensembl:ENST00000252622
GeneID:51690 KEGG:hsa:51690 UCSC:uc002lvp.4 CTD:51690
GeneCards:GC19M002321 HGNC:HGNC:20470 HPA:HPA041850 MIM:607287
neXtProt:NX_Q9UK45 PharmGKB:PA134888612 HOGENOM:HOG000223548
HOVERGEN:HBG000513 OrthoDB:EOG4GB77F GenomeRNAi:51690 NextBio:55694
Bgee:Q9UK45 CleanEx:HS_LSM7 Genevestigator:Q9UK45
GermOnline:ENSG00000130332 Uniprot:Q9UK45
Length = 103
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGN---------EKNDIGM 59
DL KY+DK +++K R G L+GFD +NLV+D T+E + + +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 60 VVIRGNSVVTV 70
VV RG SVV +
Sbjct: 74 VVCRGTSVVLI 84
>TAIR|locus:2011246 [details] [associations]
symbol:LSM1A "SM-like 1A" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12620 HSSP:Q8ZYG5 UniGene:At.15081
UniGene:At.22114 ProtClustDB:CLSN2687863 EMBL:AF411792
EMBL:AY094024 IPI:IPI00538869 RefSeq:NP_564072.1
ProteinModelPortal:Q945P8 SMR:Q945P8 STRING:Q945P8 PRIDE:Q945P8
EnsemblPlants:AT1G19120.1 GeneID:838495 KEGG:ath:AT1G19120
TAIR:At1g19120 InParanoid:Q945P8 OMA:AYERVIV PhylomeDB:Q945P8
Genevestigator:Q945P8 Uniprot:Q945P8
Length = 128
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDI--GMVVIRGN 65
L Y+DKKL + L R ++G LR FDQF N V++ E + G+ DI G+ +IRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGE 74
Query: 66 SVVTVEALEPVSKSQ 80
+VV + L+ V K +
Sbjct: 75 NVVLIGELD-VEKEE 88
>FB|FBgn0261068 [details] [associations]
symbol:LSm7 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0022008 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 GeneTree:ENSGT00510000047872 HSSP:O29885 EMBL:AY113637
RefSeq:NP_001246045.1 RefSeq:NP_609807.1 UniGene:Dm.19844
SMR:Q9VJI7 IntAct:Q9VJI7 MINT:MINT-827616 STRING:Q9VJI7
EnsemblMetazoa:FBtr0080934 EnsemblMetazoa:FBtr0308804 GeneID:35003
KEGG:dme:Dmel_CG13277 UCSC:CG13277-RA FlyBase:FBgn0261068
InParanoid:Q9VJI7 OrthoDB:EOG41G1MQ GenomeRNAi:35003 NextBio:791341
Uniprot:Q9VJI7
Length = 110
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE----------VNGNEKNDIG 58
DL KY++K++++K R G L+G+D +NLV+DNTVE + + +G
Sbjct: 23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLG 82
Query: 59 MVVIRGNSVVTV 70
+VV RG ++V +
Sbjct: 83 LVVCRGTALVLI 94
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y+++ + + + RMIVGTL+GFDQ +NL++D + E G E+ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSVVTVEALEPVSKS 79
++V + ++ + S
Sbjct: 65 DNVAVIGEIDEETDS 79
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y+++ + + + RMIVGTL+GFDQ +NL++D + E G E+ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSVVTVEALEPVSKS 79
++V + ++ + S
Sbjct: 65 DNVAVIGEIDEETDS 79
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y+++ + + + RMIVGTL+GFDQ +NL++D + E G E+ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSVVTVEALEPVSKS 79
++V + ++ + S
Sbjct: 65 DNVAVIGEIDEETDS 79
>POMBASE|SPBC11G11.06c [details] [associations]
symbol:sme1 "Sm snRNP core protein Sme1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR027078 PomBase:SPBC11G11.06c
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 GO:GO:0000395 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE PIR:T39333
RefSeq:NP_595724.1 ProteinModelPortal:Q9USZ3 IntAct:Q9USZ3
STRING:Q9USZ3 EnsemblFungi:SPBC11G11.06c.1 GeneID:2539607
KEGG:spo:SPBC11G11.06c OrthoDB:EOG49GPSD NextBio:20800764
Uniprot:Q9USZ3
Length = 84
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 17/45 (37%), Positives = 36/45 (80%)
Query: 30 GTLRGFDQFMNLVIDNTVEVNG-NEKNDIGMVVIRGNSVVTVEAL 73
G +RGFD+FMN+V+D+ V+V+ N K ++G ++++G+++ ++A+
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>UNIPROTKB|G4N0M9 [details] [associations]
symbol:MGG_16920 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
INTERPRO:IPR001163 EMBL:CM001233 GO:GO:0043581 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_003712967.1 ProteinModelPortal:G4N0M9 SMR:G4N0M9
EnsemblFungi:MGG_16920T0 GeneID:12985877 KEGG:mgr:MGG_16920
Uniprot:G4N0M9
Length = 205
Score = 83 (34.3 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE 48
M+ S + + Y++ ++++ LN R +VG + FD+ MNLV+ +T E
Sbjct: 1 MAASNKQGKMAGYINYRMRVTLNDGRQMVGQMMAFDKHMNLVLADTEE 48
Score = 51 (23.0 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 49 VNGNEKNDIGMVVIRGNSVVTVEALEP 75
V EK +G+ ++RG +V++ P
Sbjct: 72 VESEEKRTLGLTIVRGAQIVSLSVESP 98
>DICTYBASE|DDB_G0279837 [details] [associations]
symbol:lsm1 "LSM (like-Sm) domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0279837 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0000932
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AAFI02000033
Pfam:PF01423 GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
KO:K12620 OMA:IERIHVG RefSeq:XP_641509.1 HSSP:O26745
ProteinModelPortal:Q54W83 STRING:Q54W83 EnsemblProtists:DDB0233402
GeneID:8622249 KEGG:ddi:DDB_G0279837 eggNOG:COG1958
ProtClustDB:CLSZ2430662 Uniprot:Q54W83
Length = 129
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---VNG--NEKNDIGMVVIRGNSVV 68
+DKKL + L R +G +R FDQF N+V+ +T+E V ++KN +G+ IRG++VV
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKN-LGLFFIRGDNVV 67
Query: 69 TVEALEPVSKSQ 80
+ ++P + Q
Sbjct: 68 ILGEIDPDKEVQ 79
>POMBASE|SPAC2F3.17c [details] [associations]
symbol:lsm6 "U6 snRNP-associated protein Lsm6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] PomBase:SPAC2F3.17c
INTERPRO:IPR001163 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0045292 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 PDB:3SWN PDB:4EMK PDBsum:3SWN
PDBsum:4EMK KO:K12625 OMA:YISTSTK OrthoDB:EOG4CC7B6 PIR:T38534
RefSeq:NP_594380.1 ProteinModelPortal:Q9UUI1 STRING:Q9UUI1
EnsemblFungi:SPAC2F3.17c.1 GeneID:2541997 KEGG:spo:SPAC2F3.17c
HOGENOM:HOG000223542 EvolutionaryTrace:Q9UUI1 NextBio:20803078
Uniprot:Q9UUI1
Length = 75
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVV 68
L K + KK+ I+L++ G L D +MNL ++ T E VNG + N G IRGN+V+
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVL 68
Query: 69 TVEALE 74
V AL+
Sbjct: 69 YVSALD 74
>UNIPROTKB|Q5E9Z8 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9913 "Bos taurus" [GO:0071044 "histone mRNA catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
EMBL:BT020738 EMBL:BT020771 EMBL:BT020779 IPI:IPI00696891
RefSeq:NP_001017952.1 UniGene:Bt.2005 ProteinModelPortal:Q5E9Z8
STRING:Q5E9Z8 Ensembl:ENSBTAT00000002113 GeneID:535447
KEGG:bta:535447 CTD:27257 eggNOG:NOG236501
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 InParanoid:Q5E9Z8 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 NextBio:20876751 ArrayExpress:Q5E9Z8
Uniprot:Q5E9Z8
Length = 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGNSVVT 69
+DKK + L R ++G LR DQF NLV+ TVE ++ G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 70 VEALE 74
+ ++
Sbjct: 74 LGEID 78
>UNIPROTKB|E2R7S6 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
EMBL:AAEX03010393 RefSeq:XP_532806.3 ProteinModelPortal:E2R7S6
SMR:E2R7S6 PRIDE:E2R7S6 Ensembl:ENSCAFT00000009901 GeneID:475587
KEGG:cfa:475587 NextBio:20851398 Uniprot:E2R7S6
Length = 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGNSVVT 69
+DKK + L R ++G LR DQF NLV+ TVE ++ G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 70 VEALE 74
+ ++
Sbjct: 74 LGEID 78
>UNIPROTKB|O15116 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=TAS]
[GO:0071044 "histone mRNA catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 EMBL:AF000177 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 EMBL:CH471080 GO:GO:0006397 GO:GO:0003723
GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0000375 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 eggNOG:NOG236501 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:AJ238094 EMBL:AK312159 EMBL:BC001767 IPI:IPI00004436
RefSeq:NP_055277.1 UniGene:Hs.425311 ProteinModelPortal:O15116
SMR:O15116 DIP:DIP-31130N IntAct:O15116 MINT:MINT-1036791
STRING:O15116 PhosphoSite:O15116 PaxDb:O15116 PeptideAtlas:O15116
PRIDE:O15116 DNASU:27257 Ensembl:ENST00000311351 GeneID:27257
KEGG:hsa:27257 UCSC:uc003xkw.3 GeneCards:GC08M038020
HGNC:HGNC:20472 HPA:HPA024601 MIM:607281 neXtProt:NX_O15116
PharmGKB:PA134864226 InParanoid:O15116 PhylomeDB:O15116
GenomeRNAi:27257 NextBio:50202 ArrayExpress:O15116 Bgee:O15116
CleanEx:HS_LSM1 Genevestigator:O15116 GermOnline:ENSG00000175324
Uniprot:O15116
Length = 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGNSVVT 69
+DKK + L R ++G LR DQF NLV+ TVE ++ G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 70 VEALE 74
+ ++
Sbjct: 74 LGEID 78
>UNIPROTKB|I3LCU8 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 GeneTree:ENSGT00570000079167
OMA:IERIHVG EMBL:FP565893 Ensembl:ENSSSCT00000027118 Uniprot:I3LCU8
Length = 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGNSVVT 69
+DKK + L R ++G LR DQF NLV+ TVE ++ G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 70 VEALE 74
+ ++
Sbjct: 74 LGEID 78
>MGI|MGI:1914457 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=ISO] MGI:MGI:1914457 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 EMBL:BC021460 IPI:IPI00121579 RefSeq:NP_080308.1
UniGene:Mm.30198 ProteinModelPortal:Q8VC85 SMR:Q8VC85 STRING:Q8VC85
PhosphoSite:Q8VC85 REPRODUCTION-2DPAGE:Q8VC85 PaxDb:Q8VC85
PRIDE:Q8VC85 DNASU:67207 Ensembl:ENSMUST00000038421 GeneID:67207
KEGG:mmu:67207 InParanoid:Q8VC85 NextBio:323882 Bgee:Q8VC85
Genevestigator:Q8VC85 GermOnline:ENSMUSG00000037296 Uniprot:Q8VC85
Length = 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGNSVVT 69
+DKK + L R ++G LR DQF NLV+ TVE ++ G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 70 VEALE 74
+ ++
Sbjct: 74 LGEID 78
>RGD|1304967 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] RGD:1304967 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 EMBL:CH473970 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 IPI:IPI00359977 RefSeq:NP_001102346.1
UniGene:Rn.128606 Ensembl:ENSRNOT00000020721 GeneID:364624
KEGG:rno:364624 UCSC:RGD:1304967 NextBio:685701 Uniprot:D3ZWB1
Length = 133
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGNSVVT 69
+DKK + L R ++G LR DQF NLV+ TVE ++ G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGRKYGDIPRGIFVVRGENVVL 73
Query: 70 VEALE 74
+ ++
Sbjct: 74 LGEID 78
>GENEDB_PFALCIPARUM|MAL8P1.9 [details] [associations]
symbol:MAL8P1.9 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070
GO:GO:0005732 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---VNGNEKNDIGMVVIRGN 65
+++ Y++ ++ + N +R+ G L+GFDQ N+++ N E EK +G+ +IRG+
Sbjct: 5 NIESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIYKESMEKISLGVYIIRGD 64
Query: 66 SVVTV-EALEPVSKS 79
+V + E E V K+
Sbjct: 65 TVTLIGEIDEDVDKN 79
>UNIPROTKB|C0H4Y9 [details] [associations]
symbol:MAL8P1.9 "U6 snRNA-associated Sm-like protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0017070 "U6
snRNA binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070 GO:GO:0005732
EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---VNGNEKNDIGMVVIRGN 65
+++ Y++ ++ + N +R+ G L+GFDQ N+++ N E EK +G+ +IRG+
Sbjct: 5 NIESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIYKESMEKISLGVYIIRGD 64
Query: 66 SVVTV-EALEPVSKS 79
+V + E E V K+
Sbjct: 65 TVTLIGEIDEDVDKN 79
>POMBASE|SPBC3D6.08c [details] [associations]
symbol:lsm1 "mRNA decapping complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000339 "RNA cap binding" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005845 "mRNA
cap binding complex" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] PomBase:SPBC3D6.08c INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 GO:GO:0008380 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0006396 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223544
KO:K12620 eggNOG:COG1958 PIR:T40368 RefSeq:NP_595520.1
ProteinModelPortal:P87173 STRING:P87173 EnsemblFungi:SPBC3D6.08c.1
GeneID:2540520 KEGG:spo:SPBC3D6.08c OMA:YTIERIY OrthoDB:EOG4GQTF9
NextBio:20801647 Uniprot:P87173
Length = 140
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEK-NDI--GMVVIRGN 65
L Y+D+K+ + L + ++G LR FDQF NL++ T+E + ++ DI G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 66 SVVTVEALE 74
+VV + L+
Sbjct: 76 NVVLLGELD 84
>ZFIN|ZDB-GENE-040801-68 [details] [associations]
symbol:lsm1 "LSM1 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040801-68 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
eggNOG:NOG236501 GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:CR931937 EMBL:BC078334 IPI:IPI00505530 RefSeq:NP_001003551.1
UniGene:Dr.76743 STRING:Q6DBW5 Ensembl:ENSDART00000063392
GeneID:445157 KEGG:dre:445157 InParanoid:Q6DBW5 NextBio:20831919
Uniprot:Q6DBW5
Length = 133
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VN-GNEKNDI--GMVVIRGNSVV 68
+DKK + L R ++G LR DQF NLV+ TVE ++ G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVVRGENVV 72
>UNIPROTKB|P62312 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238098 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:CH471056 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0030532
GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 EMBL:AF182292 EMBL:AK312126 EMBL:AC097372
EMBL:BC016026 IPI:IPI00001146 RefSeq:NP_009011.1 UniGene:Hs.190520
ProteinModelPortal:P62312 SMR:P62312 DIP:DIP-31128N IntAct:P62312
STRING:P62312 PhosphoSite:P62312 DMDM:61227727 PaxDb:P62312
PeptideAtlas:P62312 PRIDE:P62312 DNASU:11157
Ensembl:ENST00000296581 Ensembl:ENST00000502781
Ensembl:ENST00000504181 Ensembl:ENST00000515311 GeneID:11157
KEGG:hsa:11157 UCSC:uc003ikq.4 CTD:11157 GeneCards:GC04P147097
HGNC:HGNC:17017 HPA:HPA045079 MIM:607286 neXtProt:NX_P62312
PharmGKB:PA128394584 HOVERGEN:HBG052369 InParanoid:P62312
OMA:YISTSTK OrthoDB:EOG4Q2DH6 PhylomeDB:P62312 GenomeRNAi:11157
NextBio:42433 ArrayExpress:P62312 Bgee:P62312 CleanEx:HS_LSM6
Genevestigator:P62312 GermOnline:ENSG00000164167 Uniprot:P62312
Length = 80
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 3 RSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMV 60
R P D LK+ + + + +KLN+ G L D +MN+ ++ T E VNG KN G
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 61 VIRGNSVVTV 70
IRGN+V+ +
Sbjct: 64 FIRGNNVLYI 73
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 22/54 (40%), Positives = 37/54 (68%)
Query: 28 IVGTLRGFDQFMNLVIDNTVEV------NGNEKN-DIGMVVIRGNSVVTVEALE 74
I G +RGFD+FMNLVID+ +EV N EK +G ++++G++V +++L+
Sbjct: 42 IEGKIRGFDEFMNLVIDDAIEVKQITKDNTEEKRRPLGQILLKGDNVSLIQSLQ 95
>MGI|MGI:1925901 [details] [associations]
symbol:Lsm6 "LSM6 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
MGI:MGI:1925901 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
GO:GO:0008033 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 EMBL:AK019126 EMBL:BC030427 IPI:IPI00129873
RefSeq:NP_001177933.1 RefSeq:NP_084421.1 UniGene:Mm.28694
ProteinModelPortal:P62313 SMR:P62313 STRING:P62313
PhosphoSite:P62313 PaxDb:P62313 PRIDE:P62313
Ensembl:ENSMUST00000051867 Ensembl:ENSMUST00000130325 GeneID:78651
KEGG:mmu:78651 InParanoid:P62313 NextBio:349274 Bgee:P62313
Genevestigator:P62313 GermOnline:ENSMUSG00000031683 Uniprot:P62313
Length = 80
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 3 RSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMV 60
R P D LK+ + + + +KLN+ G L D +MN+ ++ T E VNG KN G
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
Query: 61 VIRGNSVVTV 70
IRGN+V+ +
Sbjct: 64 FIRGNNVLYI 73
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 7 PPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRG 64
P D LK + + +KLN+ GTL D +MN+ ++ T E VNG KN G IRG
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 65 NSVVTVEAL 73
N+V+ + +
Sbjct: 75 NNVLYISTV 83
>WB|WBGene00003080 [details] [associations]
symbol:lsm-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0040002 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 OMA:YISTSTK HOGENOM:HOG000223542
EMBL:FO080942 GeneTree:ENSGT00700000104493 HSSP:Q8ZYG5
RefSeq:NP_490883.1 ProteinModelPortal:Q95XN6 SMR:Q95XN6
STRING:Q95XN6 PaxDb:Q95XN6 EnsemblMetazoa:Y71G12B.14 GeneID:190601
KEGG:cel:CELE_Y71G12B.14 UCSC:Y71G12B.14 CTD:190601
WormBase:Y71G12B.14 InParanoid:Q95XN6 NextBio:946330 Uniprot:Q95XN6
Length = 77
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 MSRSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIG 58
MS+ P + LKK + K + +KLN+ G L D +MN+ ++ T E NG +N G
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60
Query: 59 MVVIRGNSVVTV 70
IRGN+V+ +
Sbjct: 61 DAFIRGNNVLYI 72
>ZFIN|ZDB-GENE-040625-50 [details] [associations]
symbol:lsm6 "LSM6 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040625-50 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493
EMBL:BX324156 EMBL:BC072549 IPI:IPI00851796 RefSeq:NP_001002077.1
UniGene:Dr.81719 STRING:Q6IMW9 Ensembl:ENSDART00000053773
Ensembl:ENSDART00000147458 GeneID:415167 KEGG:dre:415167
InParanoid:Q6IMW9 NextBio:20818839 Uniprot:Q6IMW9
Length = 80
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 3 RSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMV 60
R P D LK+ + + + +KLN+ G L D +MN+ ++ T E VNG KN G
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYGDA 63
Query: 61 VIRGNSVVTV 70
+RGN+V+ +
Sbjct: 64 FLRGNNVLYI 73
>ASPGD|ASPL0000007577 [details] [associations]
symbol:AN6735 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE EnsemblFungi:CADANIAT00007528
Uniprot:C8V1X5
Length = 94
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/53 (39%), Positives = 37/53 (69%)
Query: 28 IVGTLRGFDQFMNLVIDNTVEVNGNEKND------IGMVVIRGNSVVTVEALE 74
I G +RGFD+FMNLVID+ VEV K++ +G ++++G++V ++A++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVRLATKSEEEKRRPLGQILLKGDNVSLIQAVQ 94
>SGD|S000003660 [details] [associations]
symbol:LSM1 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000339 "RNA cap binding"
evidence=IGI;IMP;IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI;IMP]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IGI;IMP;IPI] [GO:0005845 "mRNA
cap binding complex" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000003660 INTERPRO:IPR001163 GO:GO:0005634
EMBL:BK006943 GO:GO:0006397 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544 KO:K12620
eggNOG:COG1958 OrthoDB:EOG4GQTF9 EMBL:Z49399 EMBL:AY558307
PIR:S56905 RefSeq:NP_012411.1 ProteinModelPortal:P47017 SMR:P47017
DIP:DIP-1330N IntAct:P47017 MINT:MINT-390497 STRING:P47017
PaxDb:P47017 PeptideAtlas:P47017 EnsemblFungi:YJL124C GeneID:853318
KEGG:sce:YJL124C CYGD:YJL124c OMA:FMVRGEN NextBio:973666
Genevestigator:P47017 GermOnline:YJL124C Uniprot:P47017
Length = 172
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/61 (39%), Positives = 39/61 (63%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKN-----DIGMVVIRGNSV 67
+D+K+ + L RM+ G LR FDQ+ NL++ + VE + +E+N D G+ +IRG +V
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
Query: 68 V 68
V
Sbjct: 110 V 110
>WB|WBGene00004919 [details] [associations]
symbol:snr-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0032940
"secretion by cell" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006997 "nucleus organization" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0040011
GO:GO:0003723 GO:GO:0007281 EMBL:Z98866 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006997 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PANTHER:PTHR11193 PIR:T27041 RefSeq:NP_499620.1
UniGene:Cel.9740 ProteinModelPortal:Q9XTU6 SMR:Q9XTU6
DIP:DIP-24866N IntAct:Q9XTU6 MINT:MINT-1060547 STRING:Q9XTU6
PaxDb:Q9XTU6 EnsemblMetazoa:Y49E10.15 GeneID:176668
KEGG:cel:CELE_Y49E10.15 UCSC:Y49E10.15 CTD:176668
WormBase:Y49E10.15 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 InParanoid:Q9XTU6 OMA:VQIWLYE NextBio:893536
Uniprot:Q9XTU6
Length = 90
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/76 (28%), Positives = 44/76 (57%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEK--NDIG 58
QP +L +Y+ + ++++ + + G + GFD+FMN+V D EVN K N IG
Sbjct: 12 QPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGRNKIG 71
Query: 59 MVVIRGNSVVTVEALE 74
++++G+++ + A +
Sbjct: 72 RILLKGDNITLIHAAQ 87
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 7 PPDLKKY-MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE----VNGNEKND----I 57
P DL K +D+++ IKL R +VGTL+ FD N+V+ + VE +N E ++
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 58 GMVVIRGNSVVTV 70
MV IRG++V +
Sbjct: 64 EMVFIRGDTVTLI 76
>TAIR|locus:2043969 [details] [associations]
symbol:LSM6B "AT2G43810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC002333 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 EMBL:BT008305 EMBL:AK227857
EMBL:AK317095 IPI:IPI00538248 PIR:G84870 RefSeq:NP_001078052.1
RefSeq:NP_181909.1 UniGene:At.36842 ProteinModelPortal:O22823
SMR:O22823 STRING:O22823 PRIDE:O22823 EnsemblPlants:AT2G43810.1
EnsemblPlants:AT2G43810.2 GeneID:818985 KEGG:ath:AT2G43810
TAIR:At2g43810 InParanoid:O22823 OMA:YISTTKG PhylomeDB:O22823
ProtClustDB:CLSN2683093 ArrayExpress:O22823 Genevestigator:O22823
Uniprot:O22823
Length = 91
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 7 PPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRG 64
P D LK K + +KLN+ G L D +MN+ ++ T E VNG KN G +RG
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74
Query: 65 NSVVTV 70
N+V+ +
Sbjct: 75 NNVLYI 80
>WB|WBGene00003076 [details] [associations]
symbol:lsm-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 KO:K12620 EMBL:Z69302 PIR:T22035
RefSeq:NP_496385.1 HSSP:Q8ZYG5 ProteinModelPortal:Q20229 SMR:Q20229
STRING:Q20229 PaxDb:Q20229 EnsemblMetazoa:F40F8.9 GeneID:174700
KEGG:cel:CELE_F40F8.9 UCSC:F40F8.9 CTD:174700 WormBase:F40F8.9
InParanoid:Q20229 OMA:YYSEISH NextBio:885130 Uniprot:Q20229
Length = 125
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEK----NDIGMVVIRGN 65
L + +DKKL + L R ++G LR DQF NL++++ VE EK G ++IRG
Sbjct: 14 LFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGE 73
Query: 66 SV 67
+V
Sbjct: 74 NV 75
>FB|FBgn0035271 [details] [associations]
symbol:CG2021 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0071011 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
HSSP:P14678 EMBL:BT023632 RefSeq:NP_647660.1 UniGene:Dm.31160
SMR:Q9W087 IntAct:Q9W087 MINT:MINT-302001 STRING:Q9W087
EnsemblMetazoa:FBtr0072791 GeneID:38229 KEGG:dme:Dmel_CG2021
UCSC:CG2021-RA FlyBase:FBgn0035271 InParanoid:Q9W087
OrthoDB:EOG4MCVH1 GenomeRNAi:38229 NextBio:807639 Uniprot:Q9W087
Length = 95
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y++ + I R +GTL+GFDQ +N++ID E +G E+ +G+ +IRG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRG 63
Query: 65 NSVVTVEALEPVSKSQ 80
+++ + ++ S+
Sbjct: 64 DNIAVIGLIDETIDSR 79
>FB|FBgn0261790 [details] [associations]
symbol:SmE "Small ribonucleoprotein particle protein SmE"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:BT003597
RefSeq:NP_609162.1 UniGene:Dm.33848 ProteinModelPortal:Q9VLV5
SMR:Q9VLV5 DIP:DIP-18284N IntAct:Q9VLV5 MINT:MINT-342402
STRING:Q9VLV5 PaxDb:Q9VLV5 PRIDE:Q9VLV5 EnsemblMetazoa:FBtr0079560
GeneID:34080 KEGG:dme:Dmel_CG18591 UCSC:CG18591-RA CTD:34080
FlyBase:FBgn0261790 InParanoid:Q9VLV5 OrthoDB:EOG4R7STC
PhylomeDB:Q9VLV5 GenomeRNAi:34080 NextBio:786757 Bgee:Q9VLV5
GermOnline:CG18591 Uniprot:Q9VLV5
Length = 94
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 20/77 (25%), Positives = 48/77 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIG 58
QP +L +Y+ + ++++ N + I G + GFD++MNLV+D+ EV ++ ++G
Sbjct: 15 QPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRNLG 74
Query: 59 MVVIRGNSVVTVEALEP 75
++++G+++ ++ + P
Sbjct: 75 RIMLKGDNITLIQNVSP 91
>RGD|2318883 [details] [associations]
symbol:LOC100362099 "small nuclear ribonucleoprotein polypeptide
E-like" species:10116 "Rattus norvegicus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR027078 RGD:2318883
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:PPINCIY
IPI:IPI00368169 RefSeq:XP_002728814.1 RefSeq:XP_003753347.1
Ensembl:ENSRNOT00000040164 GeneID:100362099 KEGG:rno:100362099
UCSC:RGD:2318883 Uniprot:D4A8M5
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>ZFIN|ZDB-GENE-040426-1112 [details] [associations]
symbol:snrpe "small nuclear ribonucleoprotein
polypeptide E" species:7955 "Danio rerio" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040426-1112 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 CTD:6635 HOVERGEN:HBG003229
OrthoDB:EOG4DBTGC PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:BC049062 IPI:IPI00507764
RefSeq:NP_957298.1 UniGene:Dr.117027 ProteinModelPortal:Q7ZUG0
STRING:Q7ZUG0 PRIDE:Q7ZUG0 Ensembl:ENSDART00000050296 GeneID:393979
KEGG:dre:393979 InParanoid:Q7ZUG0 NextBio:20814949 Bgee:Q7ZUG0
Uniprot:Q7ZUG0
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I + N I G + GFD++MNLV+D+ EV+ KN +G
Sbjct: 16 QPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>UNIPROTKB|P62303 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9031 "Gallus gallus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65702 EMBL:L19064 IPI:IPI00587414 RefSeq:NP_990581.1
UniGene:Gga.23395 ProteinModelPortal:P62303 SMR:P62303
MINT:MINT-124835 STRING:P62303 PRIDE:P62303
Ensembl:ENSGALT00000000190 GeneID:396180 KEGG:gga:396180
InParanoid:P62303 NextBio:20816234 Uniprot:P62303
Length = 92
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>UNIPROTKB|A4FUI2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 EMBL:BC114915
IPI:IPI00845188 RefSeq:NP_001076928.1 UniGene:Bt.36560
ProteinModelPortal:A4FUI2 SMR:A4FUI2 STRING:A4FUI2 PRIDE:A4FUI2
GeneID:531493 KEGG:bta:531493 CTD:6635 HOVERGEN:HBG003229
InParanoid:A4FUI2 OrthoDB:EOG4DBTGC NextBio:20875471
PANTHER:PTHR11193 Uniprot:A4FUI2
Length = 92
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>UNIPROTKB|P62304 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471067 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 OMA:VQIWLYE EMBL:M37716 EMBL:M15919 EMBL:X12466
EMBL:AK312130 EMBL:BC002639 EMBL:BC090951 EMBL:M21258 EMBL:M21253
IPI:IPI00029266 PIR:A32127 RefSeq:NP_003085.1 UniGene:Hs.334612
UniGene:Hs.654418 ProteinModelPortal:P62304 SMR:P62304
DIP:DIP-31220N IntAct:P62304 MINT:MINT-225773 STRING:P62304
PhosphoSite:P62304 DMDM:61237380 PaxDb:P62304 PRIDE:P62304
DNASU:6635 Ensembl:ENST00000414487 GeneID:6635 KEGG:hsa:6635
UCSC:uc001hai.3 GeneCards:GC01P203834 HGNC:HGNC:11161 MIM:128260
neXtProt:NX_P62304 PharmGKB:PA36002 InParanoid:P62304 ChiTaRS:SNRPE
EvolutionaryTrace:P62304 GenomeRNAi:6635 NextBio:25849
ArrayExpress:P62304 Bgee:P62304 CleanEx:HS_SNRPE
Genevestigator:P62304 GermOnline:ENSG00000182004 Uniprot:P62304
Length = 92
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>UNIPROTKB|A1XQR9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 HOVERGEN:HBG003229 PANTHER:PTHR11193
EMBL:DQ629140 EMBL:DQ629141 RefSeq:NP_001090934.1 UniGene:Ssc.1070
UniGene:Ssc.75275 ProteinModelPortal:A1XQR9 GeneID:100038330
KEGG:ssc:100038330 Uniprot:A1XQR9
Length = 92
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>UNIPROTKB|I3LDW9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:FP312914
EMBL:FP565233 ProteinModelPortal:I3LDW9 SMR:I3LDW9 PRIDE:I3LDW9
Ensembl:ENSSSCT00000023057 Uniprot:I3LDW9
Length = 92
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>MGI|MGI:98346 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein E" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027078
MGI:MGI:98346 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 CTD:6635 HOVERGEN:HBG003229
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65703 EMBL:X65704 EMBL:AK019462 EMBL:BC008262 EMBL:BC051207
EMBL:BC055765 IPI:IPI00133955 PIR:I48778 RefSeq:NP_033253.1
UniGene:Mm.249110 ProteinModelPortal:P62305 SMR:P62305
PhosphoSite:P62305 PRIDE:P62305 Ensembl:ENSMUST00000166915
GeneID:20643 KEGG:mmu:20643 UCSC:uc007cql.2 NextBio:299051
Bgee:P62305 CleanEx:MM_SNRPE Genevestigator:P62305 Uniprot:P62305
Length = 92
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>RGD|2321675 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein polypeptide E"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA;ISO]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
InterPro:IPR027078 RGD:2321675 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11097 OrthoDB:EOG4DBTGC PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE IPI:IPI00198418
RefSeq:XP_001064438.1 RefSeq:XP_002727191.1
Ensembl:ENSRNOT00000042614 GeneID:685587 KEGG:rno:685587 CTD:685587
NextBio:730016 Uniprot:D3ZSP1
Length = 92
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>DICTYBASE|DDB_G0272320 [details] [associations]
symbol:snrpb "putative small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] dictyBase:DDB_G0272320 INTERPRO:IPR001163
GO:GO:0005634 GenomeReviews:CM000151_GR GO:GO:0003723
EMBL:AAFI02000008 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P14678 KO:K11086 InterPro:IPR017131 PIRSF:PIRSF037187
RefSeq:XP_645139.1 ProteinModelPortal:Q55A45 SMR:Q55A45
STRING:Q55A45 EnsemblProtists:DDB0233178 GeneID:8618309
KEGG:ddi:DDB_G0272320 OMA:NMPPQGF Uniprot:Q55A45
Length = 274
Score = 102 (41.0 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 4 SGQPPDLK--KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-----GNE--- 53
SG P K +Y++ ++++ + R+IVG FD+ MN+VI + E G E
Sbjct: 2 SGMPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDRE 61
Query: 54 -KNDIGMVVIRGNSVVT--VEALEP 75
K +GM++IRG +VV+ VEA P
Sbjct: 62 EKRTLGMILIRGETVVSMSVEAPPP 86
>RGD|2319339 [details] [associations]
symbol:LOC100361838 "small nuclear ribonucleoprotein E-like"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 RGD:2319339 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 OrthoDB:EOG4DBTGC PANTHER:PTHR11193 OMA:INIIFRY
IPI:IPI00363837 RefSeq:XP_001065908.1 Ensembl:ENSRNOT00000043934
GeneID:360844 KEGG:rno:360844 CTD:360844 NextBio:674328
Uniprot:D4AAS3
Length = 92
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 20/75 (26%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>GENEDB_PFALCIPARUM|MAL13P1.253 [details] [associations]
symbol:MAL13P1.253 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE
RefSeq:XP_001350215.1 ProteinModelPortal:Q8IDJ7
EnsemblProtists:MAL13P1.253:mRNA GeneID:813814 KEGG:pfa:MAL13P1.253
EuPathDB:PlasmoDB:PF3D7_1350200 ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 28 IVGTLRGFDQFMNLVIDNTVEVN--GNEKNDIGMVVIRGNSVVTV 70
I G + GFD++MN+V+D T E++ N K ++G ++++G+++ +
Sbjct: 41 IEGIILGFDEYMNMVLDQTKEISVKKNTKKELGKILLKGDTITLI 85
>UNIPROTKB|Q8IDJ7 [details] [associations]
symbol:MAL13P1.253 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11097 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE RefSeq:XP_001350215.1
ProteinModelPortal:Q8IDJ7 EnsemblProtists:MAL13P1.253:mRNA
GeneID:813814 KEGG:pfa:MAL13P1.253 EuPathDB:PlasmoDB:PF3D7_1350200
ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 28 IVGTLRGFDQFMNLVIDNTVEVN--GNEKNDIGMVVIRGNSVVTV 70
I G + GFD++MN+V+D T E++ N K ++G ++++G+++ +
Sbjct: 41 IEGIILGFDEYMNMVLDQTKEISVKKNTKKELGKILLKGDTITLI 85
>ASPGD|ASPL0000075585 [details] [associations]
symbol:AN10561 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
GO:GO:0003676 GO:GO:0030529 EMBL:BN001303 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
OMA:PIIRPPG EnsemblFungi:CADANIAT00005970 Uniprot:C8V8F9
Length = 196
Score = 64 (27.6 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 18 LQIKLNANRMIVGTLRGFDQFMNLVIDNTVE 48
+++ LN R + G + FD+ MNLV+ +T E
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEE 31
Score = 50 (22.7 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 45 NTVEVNGNEKNDIGMVVIRGNSVVT--VEALEPVSKS 79
N V EK +G+ ++RG VV+ V+ P S
Sbjct: 45 NAPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPADPS 81
>SGD|S000000831 [details] [associations]
symbol:SMB1 "Core Sm protein Sm B" species:4932
"Saccharomyces cerevisiae" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] SGD:S000000831
INTERPRO:IPR001163 GO:GO:0005682 GO:GO:0003723 EMBL:BK006939
EMBL:U18778 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0071004 RefSeq:NP_010949.4 GeneID:856754
KEGG:sce:YER032W Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GO:GO:0005685 RefSeq:NP_010946.3 GeneID:856751
KEGG:sce:YER029C KO:K11086 HOGENOM:HOG000188899
GeneTree:ENSGT00670000098029 OrthoDB:EOG4JMC0B EMBL:AY558450
PIR:S50487 ProteinModelPortal:P40018 SMR:P40018 DIP:DIP-843N
IntAct:P40018 MINT:MINT-515980 STRING:P40018 PaxDb:P40018
PeptideAtlas:P40018 EnsemblFungi:YER029C CYGD:YER029c OMA:RGEQILS
NextBio:982902 Genevestigator:P40018 GermOnline:YER029C
Uniprot:P40018
Length = 196
Score = 72 (30.4 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE 48
L +D KL++ R+ +G L FD+ MNLV++ +E
Sbjct: 12 LANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIE 50
Score = 41 (19.5 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 53 EKNDIGMVVIRGNSVV-TVEALEPV-SKSQ 80
EK +G+ ++RG ++ TV +P+ SK +
Sbjct: 78 EKRVLGLTILRGEQILSTVVEDKPLLSKKE 107
>DICTYBASE|DDB_G0302414 [details] [associations]
symbol:snrpE "small nuclear ribonucleoprotein E"
species:44689 "Dictyostelium discoideum" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR027078
dictyBase:DDB_G0302414 INTERPRO:IPR001163 GenomeReviews:CM000154_GR
GO:GO:0003676 EMBL:AAFI02000109 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GO:GO:0005685 KO:K11097 PANTHER:PTHR11193 OMA:VQIWLYE
RefSeq:XP_002649120.1 EnsemblProtists:DDB0302415 GeneID:8626537
KEGG:ddi:DDB_G0302414 Uniprot:C7G054
Length = 92
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 21/73 (28%), Positives = 42/73 (57%)
Query: 12 KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGN 65
K++ +K ++++ N + I G + G D++MNLV+DN E + K +G ++++G+
Sbjct: 19 KFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASELSIKKKTKKPLGQILLKGD 78
Query: 66 --SVVTVEALEPV 76
S+V A P+
Sbjct: 79 NISLVLEAATRPI 91
>UNIPROTKB|F1ME11 [details] [associations]
symbol:LOC100296197 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:DAAA02072295
IPI:IPI00905250 Ensembl:ENSBTAT00000057036 Uniprot:F1ME11
Length = 91
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 19/75 (25%), Positives = 45/75 (60%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + I++ N I G + GFD++ NLV+D+ E++ K+ +G
Sbjct: 15 QPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKTKSRKQLG 74
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 75 RIMLKGDNITLIQSV 89
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/66 (27%), Positives = 43/66 (65%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKND---IGMVVIRG 64
L +M++++Q+ N R+++G+L+GFD NL++ ++ E ++ ++ + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 65 NSVVTV 70
+V V
Sbjct: 63 ENVAMV 68
>UNIPROTKB|J9P098 [details] [associations]
symbol:LOC100855941 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
OMA:VQIWLYE EMBL:AAEX03000616 Ensembl:ENSCAFT00000003298
Uniprot:J9P098
Length = 92
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 19/75 (25%), Positives = 47/75 (62%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N I G + GFD++M+LV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMSLVLDDAKEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>UNIPROTKB|J9PAB3 [details] [associations]
symbol:J9PAB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:AAEX03005679
Ensembl:ENSCAFT00000021768 OMA:INIIFRY Uniprot:J9PAB3
Length = 91
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/60 (30%), Positives = 38/60 (63%)
Query: 12 KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIGMVVIRGN 65
+Y+ + +I++ N I G + GFD++MNLV+D+ VE++ K+ +G ++++G+
Sbjct: 23 RYLQNRSRIQVWLYEPVNMRIEGCIIGFDEYMNLVLDDAVEIHSKTKSRKQLGWIMLKGD 82
>UNIPROTKB|E1BHK8 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 EMBL:DAAA02049203 IPI:IPI00690390
Ensembl:ENSBTAT00000022848 OMA:PPINCIY NextBio:20929647
Uniprot:E1BHK8
Length = 92
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/75 (25%), Positives = 46/75 (61%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +Y+ + +I++ N G++ GFD+ MNLV+D+ E++ K+ +G
Sbjct: 16 QPINLIFRYLQNRSRIRVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKTKSRKQLG 75
Query: 59 MVVIRGNSVVTVEAL 73
++++G+++ ++++
Sbjct: 76 RIMLKGDNITLLQSV 90
>UNIPROTKB|Q2HJH0 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:BC105404 IPI:IPI00700036 RefSeq:NP_001040018.1
UniGene:Bt.43458 ProteinModelPortal:Q2HJH0 SMR:Q2HJH0 STRING:Q2HJH0
Ensembl:ENSBTAT00000003010 GeneID:615136 KEGG:bta:615136 CTD:23658
GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310 InParanoid:Q2HJH0
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX NextBio:20899463
Uniprot:Q2HJH0
Length = 91
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN----GNEKNDIGMVVIRGNSV 67
K + ++ I + +++ IVGTL GFD F+N+V+++ E G + +++ GN++
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
>UNIPROTKB|Q9Y4Y9 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238097 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043928 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:23658
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX
EMBL:AF182291 EMBL:AC018641 EMBL:BC005938 EMBL:BF701546
IPI:IPI00220493 IPI:IPI00908769 RefSeq:NP_001124182.1
RefSeq:NP_001132971.1 RefSeq:NP_036454.1 UniGene:Hs.424908
ProteinModelPortal:Q9Y4Y9 SMR:Q9Y4Y9 DIP:DIP-31162N IntAct:Q9Y4Y9
STRING:Q9Y4Y9 PhosphoSite:Q9Y4Y9 DMDM:10720081 PaxDb:Q9Y4Y9
PRIDE:Q9Y4Y9 DNASU:23658 Ensembl:ENST00000409292
Ensembl:ENST00000409782 Ensembl:ENST00000409909
Ensembl:ENST00000409952 Ensembl:ENST00000410044
Ensembl:ENST00000450169 GeneID:23658 KEGG:hsa:23658 UCSC:uc003tct.2
GeneCards:GC07M032524 HGNC:HGNC:17162 HPA:HPA019054 MIM:607285
neXtProt:NX_Q9Y4Y9 PharmGKB:PA134881171 InParanoid:Q9Y4Y9
PhylomeDB:Q9Y4Y9 GenomeRNAi:23658 NextBio:46501 ArrayExpress:Q9Y4Y9
Bgee:Q9Y4Y9 CleanEx:HS_LSM5 Genevestigator:Q9Y4Y9
GermOnline:ENSG00000106355 Uniprot:Q9Y4Y9
Length = 91
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN----GNEKNDIGMVVIRGNSV 67
K + ++ I + +++ IVGTL GFD F+N+V+++ E G + +++ GN++
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
>MGI|MGI:1913623 [details] [associations]
symbol:Lsm5 "LSM5 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] MGI:MGI:1913623 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:23658 GeneTree:ENSGT00390000001455
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW EMBL:AK009617
EMBL:AK011218 EMBL:BC048459 EMBL:BC061085 EMBL:BC132626
EMBL:BC132628 IPI:IPI00119813 RefSeq:NP_079796.1
RefSeq:XP_003946397.1 UniGene:Mm.25642 ProteinModelPortal:P62322
SMR:P62322 IntAct:P62322 PhosphoSite:P62322 PRIDE:P62322
Ensembl:ENSMUST00000170382 GeneID:100044729 GeneID:66373
KEGG:mmu:100044729 KEGG:mmu:66373 UCSC:uc009cbj.2 NextBio:458218
Bgee:P62322 Genevestigator:P62322 GermOnline:ENSMUSG00000054264
Uniprot:P62322
Length = 91
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN----GNEKNDIGMVVIRGNSV 67
K + ++ I + +++ IVGTL GFD F+N+V+++ E G + +++ GN++
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
>POMBASE|SPBC3E7.14 [details] [associations]
symbol:smf1 "Sm snRNP core protein Smf1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609
PomBase:SPBC3E7.14 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GO:GO:0000395 KO:K11098
PIR:T40388 RefSeq:NP_596101.1 ProteinModelPortal:O59734 SMR:O59734
IntAct:O59734 STRING:O59734 PRIDE:O59734 EnsemblFungi:SPBC3E7.14.1
GeneID:2540330 KEGG:spo:SPBC3E7.14 OMA:EMLLRNN OrthoDB:EOG4GJ2ZZ
NextBio:20801459 Uniprot:O59734
Length = 78
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 8 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNS 66
P L+ + K + ++L + GTL+ D +MNL + N E V+G + D+G ++IR N+
Sbjct: 10 PFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNN 69
Query: 67 VVTV 70
V+ V
Sbjct: 70 VLWV 73
>SGD|S000000614 [details] [associations]
symbol:MAK31 "Non-catalytic subunit of N-terminal
acetyltransferase of the NatC type" species:4932 "Saccharomyces
cerevisiae" [GO:0004596 "peptide alpha-N-acetyltransferase
activity" evidence=IMP] [GO:0031417 "NatC complex" evidence=IDA]
[GO:0006474 "N-terminal protein amino acid acetylation"
evidence=IMP] SGD:S000000614 INTERPRO:IPR001163 EMBL:X59720
EMBL:BK006937 GO:GO:0006474 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0031417 EMBL:AY558148 PIR:S07694 RefSeq:NP_009948.1
ProteinModelPortal:P23059 SMR:P23059 DIP:DIP-1429N IntAct:P23059
MINT:MINT-383676 STRING:P23059 EnsemblFungi:YCR020C-A GeneID:850383
KEGG:sce:YCR020C-A CYGD:YCR020c-a HOGENOM:HOG000000898 OMA:QMNLLLD
OrthoDB:EOG4R274S NextBio:965891 Genevestigator:P23059
GermOnline:YCR020C-A Uniprot:P23059
Length = 88
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVT 69
L ++ L + L +R++VG+L D MNL++D+ E G+ +G+V + SV T
Sbjct: 6 LSDFIGNTLIVSLTEDRILVGSLVAVDAQMNLLLDHVEERMGSSSRMMGLVSVPRRSVKT 65
Query: 70 VEALEPV 76
+ +PV
Sbjct: 66 IMIDKPV 72
>WB|WBGene00003079 [details] [associations]
symbol:lsm-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] INTERPRO:IPR001163 GO:GO:0009792
GO:GO:0006915 GO:GO:0000003 GO:GO:0042127 GO:GO:0040020
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z81071 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE----VNGNEKNDIGMVVIRGN 65
+ K + K+ + + ++ IVGTL GFD ++N+V+++ VE +G + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 66 SV 67
+
Sbjct: 78 HI 79
>UNIPROTKB|O18694 [details] [associations]
symbol:lsm-5 "Protein LSM-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006915 GO:GO:0000003
GO:GO:0042127 GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z81071 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE----VNGNEKNDIGMVVIRGN 65
+ K + K+ + + ++ IVGTL GFD ++N+V+++ VE +G + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 66 SV 67
+
Sbjct: 78 HI 79
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV----NGNEKNDIGMVVIRGN 65
L+ Y+ K++ + R I+GTLRG DQ +N+V++ E G E +G+ +I+G+
Sbjct: 4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKGD 63
Query: 66 SVVTV 70
V +
Sbjct: 64 DVAVI 68
>UNIPROTKB|A6NHK2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AC114402
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 HGNC:HGNC:11161 ChiTaRS:SNRPE
EMBL:AC118554 IPI:IPI00647942 ProteinModelPortal:A6NHK2 SMR:A6NHK2
STRING:A6NHK2 PRIDE:A6NHK2 Ensembl:ENST00000367208
HOGENOM:HOG000293268 ArrayExpress:A6NHK2 Bgee:A6NHK2 Uniprot:A6NHK2
Length = 52
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 14/48 (29%), Positives = 34/48 (70%)
Query: 28 IVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIGMVVIRGNSVVTVEAL 73
I G + GFD++MNLV+D+ E++ K+ +G ++++G+++ ++++
Sbjct: 3 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 50
>UNIPROTKB|A4RQ29 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003723
GO:GO:0008033 GO:GO:0000932 EMBL:CM001231 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12625 RefSeq:XP_003710600.1
ProteinModelPortal:A4RQ29 STRING:A4RQ29 EnsemblFungi:MGG_05701T0
GeneID:2676106 KEGG:mgr:MGG_05701 OrthoDB:EOG4CC7B6 Uniprot:A4RQ29
Length = 83
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 5 GQPPD--LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVV 61
G+ P L + + + +KLN+ + G L+ D +MN+ ++ E V G +K G
Sbjct: 11 GKDPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAF 70
Query: 62 IRGNSVVTVEA 72
+RGN+V+ + A
Sbjct: 71 VRGNNVMYIAA 81
>TAIR|locus:2053989 [details] [associations]
symbol:AT2G18740 "AT2G18740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0030529
EMBL:AC005724 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:PPINCIY
ProtClustDB:CLSN2683057 EMBL:AY086369 EMBL:BT005662 EMBL:AK118809
IPI:IPI00523358 PIR:A84568 RefSeq:NP_179464.1 UniGene:At.39949
ProteinModelPortal:Q9ZV45 SMR:Q9ZV45 IntAct:Q9ZV45 STRING:Q9ZV45
PRIDE:Q9ZV45 EnsemblPlants:AT2G18740.1 GeneID:816389
KEGG:ath:AT2G18740 TAIR:At2g18740 InParanoid:Q9ZV45
PhylomeDB:Q9ZV45 ArrayExpress:Q9ZV45 Genevestigator:Q9ZV45
Uniprot:Q9ZV45
Length = 88
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVN--GNEKNDIG 58
QP +L +++ K +I++ + I G + GFD++MNLV+D EV+ N + +G
Sbjct: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLG 71
Query: 59 MVVIRGNSV 67
++++G+++
Sbjct: 72 RILLKGDNI 80
>FB|FBgn0034564 [details] [associations]
symbol:CG9344 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005688 "U6 snRNP"
evidence=NAS] INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0005681
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P54999 KO:K12625 OMA:YISTSTK GeneTree:ENSGT00700000104493
EMBL:AY113474 RefSeq:NP_611528.1 UniGene:Dm.18844 SMR:Q9W2P5
IntAct:Q9W2P5 MINT:MINT-967510 STRING:Q9W2P5
EnsemblMetazoa:FBtr0071520 GeneID:37372 KEGG:dme:Dmel_CG9344
UCSC:CG9344-RA FlyBase:FBgn0034564 InParanoid:Q9W2P5
OrthoDB:EOG45DV65 GenomeRNAi:37372 NextBio:803315 Uniprot:Q9W2P5
Length = 79
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVVTV 70
+ + +KLN G L D +MN+ ++ T E VNG KN G IRGN+V+ +
Sbjct: 17 RPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGDAFIRGNNVLYI 72
>UNIPROTKB|G4MST0 [details] [associations]
symbol:MGG_04539 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12627 RefSeq:XP_003713591.1 ProteinModelPortal:G4MST0
EnsemblFungi:MGG_04539T0 GeneID:2678209 KEGG:mgr:MGG_04539
Uniprot:G4MST0
Length = 101
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKN----DIGMV 60
L Y+DK++ I RM++GTL D N+++ N E +G+E + +G
Sbjct: 5 LNSYVDKRVVIMTTDGRMLIGTLINSDNQANIILYNVTERHIAPADGDEDSVDRPSVGTE 64
Query: 61 VIRGNSVVTV 70
+IRG++++ V
Sbjct: 65 IIRGSTILVV 74
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-------VNGNEK--NDIGMV 60
+ K +++K+ I L +NR GTL GFD F+N+++++ VE + NEK G +
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRM 71
Query: 61 VIRGNSV 67
++ GN++
Sbjct: 72 LLSGNNI 78
>ZFIN|ZDB-GENE-070822-23 [details] [associations]
symbol:zgc:171959 "zgc:171959" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-070822-23 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX HOGENOM:HOG000223547
EMBL:BX571950 EMBL:BC150414 IPI:IPI00609349 RefSeq:NP_001093908.1
UniGene:Dr.117231 STRING:A7E2L8 Ensembl:ENSDART00000105903
GeneID:563948 KEGG:dre:563948 NextBio:20885150 Uniprot:A7E2L8
Length = 91
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN----GNEKNDIGMVVIRGNSV 67
K + ++ I + ++ IVGTL GFD F+N+V+++ E G + +++ GN++
Sbjct: 20 KCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
>UNIPROTKB|J3QLE5 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9606 "Homo sapiens" [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HGNC:HGNC:11164 ChiTaRS:SNRPN EMBL:AC124312
EMBL:AC090602 EMBL:AC090983 Ensembl:ENST00000579070 Uniprot:J3QLE5
Length = 169
Score = 88 (36.0 bits), Expect = 0.00051, P = 0.00051
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>UNIPROTKB|E2R1C4 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11086 CTD:6628 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 OMA:KNNKMIQ
EMBL:AAEX03013840 RefSeq:XP_542930.2 ProteinModelPortal:E2R1C4
Ensembl:ENSCAFT00000030343 GeneID:485806 KEGG:cfa:485806
Uniprot:E2R1C4
Length = 231
Score = 91 (37.1 bits), Expect = 0.00054, P = 0.00054
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>MGI|MGI:98342 [details] [associations]
symbol:Snrpb "small nuclear ribonucleoprotein B" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IDA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IDA] MGI:MGI:98342 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 GO:GO:0071204 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11086 CTD:6628 HOGENOM:HOG000188899
HOVERGEN:HBG001019 OrthoDB:EOG44MXTD InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 OMA:KNNKMIQ
ChiTaRS:SNRPB EMBL:M58761 EMBL:AK146319 IPI:IPI00114052 PIR:I53659
RefSeq:NP_033251.1 UniGene:Mm.88216 ProteinModelPortal:P27048
SMR:P27048 IntAct:P27048 STRING:P27048 PhosphoSite:P27048
PaxDb:P27048 PRIDE:P27048 DNASU:20638 Ensembl:ENSMUST00000103199
GeneID:20638 KEGG:mmu:20638 InParanoid:P27048 NextBio:299039
PMAP-CutDB:P27048 Bgee:P27048 CleanEx:MM_SNRPB
Genevestigator:P27048 GermOnline:ENSMUSG00000027404 Uniprot:P27048
Length = 231
Score = 91 (37.1 bits), Expect = 0.00054, P = 0.00054
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>FB|FBgn0000426 [details] [associations]
symbol:SmF "Small ribonucleoprotein particle protein SmF"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0007052 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GeneTree:ENSGT00700000104493 KO:K11098
OMA:KWGHEYK EMBL:L33341 EMBL:AY118862 RefSeq:NP_523708.2
UniGene:Dm.14460 ProteinModelPortal:Q24297 SMR:Q24297
DIP:DIP-20723N IntAct:Q24297 MINT:MINT-768802 STRING:Q24297
PaxDb:Q24297 EnsemblMetazoa:FBtr0088010 GeneID:36314
KEGG:dme:Dmel_CG16792 CTD:36314 FlyBase:FBgn0000426
InParanoid:Q24297 OrthoDB:EOG4DBRXC PhylomeDB:Q24297
GenomeRNAi:36314 NextBio:797873 Bgee:Q24297 GermOnline:CG16792
Uniprot:Q24297
Length = 88
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 4 SGQPPDLKKYMD----KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIG 58
+G P + K +++ K + +KL + G L D +MN+ + NT EV G+ ++G
Sbjct: 3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLG 62
Query: 59 MVVIRGNSVVTVEALE 74
V+IR N+V+ ++ +E
Sbjct: 63 EVLIRCNNVLYIKGME 78
>UNIPROTKB|F1S891 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
EMBL:CU633588 Ensembl:ENSSSCT00000007852 OMA:PGHAPPR Uniprot:F1S891
Length = 238
Score = 91 (37.1 bits), Expect = 0.00057, P = 0.00057
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>UNIPROTKB|G1K134 [details] [associations]
symbol:Bt.57435 "Small nuclear ribonucleoprotein-associated
protein" species:9913 "Bos taurus" [GO:0071208 "histone pre-mRNA
DCP binding" evidence=IEA] [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 GO:GO:0071204 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 EMBL:DAAA02036194
Ensembl:ENSBTAT00000001379 OMA:PGIAFFD Uniprot:G1K134
Length = 239
Score = 91 (37.1 bits), Expect = 0.00058, P = 0.00058
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>UNIPROTKB|Q58DW4 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9913 "Bos taurus" [GO:0042802 "identical
protein binding" evidence=ISS] [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0042802 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:P14678 KO:K11086 EMBL:BT021483 IPI:IPI00702381
RefSeq:NP_001029903.1 UniGene:Bt.57435 ProteinModelPortal:Q58DW4
SMR:Q58DW4 STRING:Q58DW4 PRIDE:Q58DW4 GeneID:613304 KEGG:bta:613304
CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019 InParanoid:Q58DW4
OrthoDB:EOG44MXTD NextBio:20898510 InterPro:IPR017131
PIRSF:PIRSF037187 Uniprot:Q58DW4
Length = 240
Score = 91 (37.1 bits), Expect = 0.00058, P = 0.00058
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>UNIPROTKB|P14678 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
proteins B and B'" species:9606 "Homo sapiens" [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] [GO:0071208
"histone pre-mRNA DCP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005681
"spliceosomal complex" evidence=TAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=TAS] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0034660 "ncRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471133 GO:GO:0000387 GO:GO:0034660 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788
GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689 GO:GO:0071204
Pfam:PF01423 GO:GO:0008334 GO:GO:0005683 GO:GO:0071208
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11086 CTD:6628
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 EMBL:X17567 EMBL:X17568
EMBL:X15893 EMBL:AF134825 EMBL:AF134822 EMBL:AF134823 EMBL:AF134824
EMBL:AL049650 EMBL:CR456969 EMBL:M34081 EMBL:M34082 EMBL:X52979
IPI:IPI00027285 IPI:IPI00329512 IPI:IPI00395674 PIR:S09377
RefSeq:NP_003082.1 RefSeq:NP_937859.1 UniGene:Hs.83753 PDB:1D3B
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:1D3B
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW ProteinModelPortal:P14678 SMR:P14678 DIP:DIP-31239N
IntAct:P14678 MINT:MINT-124876 STRING:P14678 PhosphoSite:P14678
DMDM:134037 PaxDb:P14678 PRIDE:P14678 DNASU:6628
Ensembl:ENST00000381342 Ensembl:ENST00000438552 GeneID:6628
KEGG:hsa:6628 UCSC:uc002wfz.1 GeneCards:GC20M002442 HGNC:HGNC:11153
HPA:CAB009610 HPA:HPA003482 MIM:182282 neXtProt:NX_P14678
PharmGKB:PA35995 ChiTaRS:SNRPB EvolutionaryTrace:P14678
GenomeRNAi:6628 NextBio:25817 ArrayExpress:P14678 Bgee:P14678
CleanEx:HS_SNRPB Genevestigator:P14678 GermOnline:ENSG00000125835
Uniprot:P14678
Length = 240
Score = 91 (37.1 bits), Expect = 0.00058, P = 0.00058
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>UNIPROTKB|Q9N1Q0 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9315 "Macropus eugenii" [GO:0005683 "U7 snRNP"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
HSSP:P14678 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 EMBL:AF176323
ProteinModelPortal:Q9N1Q0 SMR:Q9N1Q0 PRIDE:Q9N1Q0
Ensembl:ENSMEUT00000015669 Uniprot:Q9N1Q0
Length = 240
Score = 91 (37.1 bits), Expect = 0.00058, P = 0.00058
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>UNIPROTKB|Q9TU67 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9365 "Erinaceus europaeus" [GO:0005683 "U7
snRNP" evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 EMBL:AF134826 EMBL:AF134829
ProteinModelPortal:Q9TU67 SMR:Q9TU67 PRIDE:Q9TU67 Uniprot:Q9TU67
Length = 240
Score = 91 (37.1 bits), Expect = 0.00058, P = 0.00058
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>FB|FBgn0035675 [details] [associations]
symbol:CG6610 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=NAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0005681 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW EMBL:AY113521 RefSeq:NP_648022.1 UniGene:Dm.14483
SMR:Q9VRT7 IntAct:Q9VRT7 MINT:MINT-768745 STRING:Q9VRT7
EnsemblMetazoa:FBtr0077048 EnsemblMetazoa:FBtr0332059
EnsemblMetazoa:FBtr0332060 GeneID:38693 KEGG:dme:Dmel_CG6610
UCSC:CG6610-RA FlyBase:FBgn0035675 InParanoid:Q9VRT7
OrthoDB:EOG43TXC6 GenomeRNAi:38693 NextBio:809911 Uniprot:Q9VRT7
Length = 91
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV----NGNEKNDIGMVVIRGNSV 67
K + ++ I + ++ +VGTL GFD F+N+++D+ E +G + +++ GN++
Sbjct: 21 KCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNI 80
>GENEDB_PFALCIPARUM|PF14_0411 [details] [associations]
symbol:PF14_0411 "small nuclear ribonuclear
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0003676 EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12624 OMA:CIGSRIW ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547
HSSP:Q8ZYG5 RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38
SMR:Q8IL38 EnsemblProtists:PF14_0411:mRNA GeneID:811993
KEGG:pfa:PF14_0411 EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---VNGNEK-NDIGMVVIRG- 64
+ K + K+ I + ++ IVG L GFD+++N+V+++ E N +K N I +++ G
Sbjct: 16 MDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGL 75
Query: 65 NSVVTVEALEPVS 77
N + V PV+
Sbjct: 76 NITIMVPGGTPVN 88
>UNIPROTKB|Q8IL38 [details] [associations]
symbol:PF14_0411 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547 HSSP:Q8ZYG5
RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38 SMR:Q8IL38
EnsemblProtists:PF14_0411:mRNA GeneID:811993 KEGG:pfa:PF14_0411
EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---VNGNEK-NDIGMVVIRG- 64
+ K + K+ I + ++ IVG L GFD+++N+V+++ E N +K N I +++ G
Sbjct: 16 MDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGL 75
Query: 65 NSVVTVEALEPVS 77
N + V PV+
Sbjct: 76 NITIMVPGGTPVN 88
>TAIR|locus:2118781 [details] [associations]
symbol:AT4G30330 "AT4G30330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] [GO:0016925 "protein sumoylation" evidence=RCA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O26745 eggNOG:COG1958 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:AY087756
EMBL:BT024534 EMBL:AK175112 EMBL:AK175313 EMBL:AK176788
IPI:IPI00542865 RefSeq:NP_567844.1 UniGene:At.31841
ProteinModelPortal:Q8LAK5 SMR:Q8LAK5 IntAct:Q8LAK5 STRING:Q8LAK5
PaxDb:Q8LAK5 PRIDE:Q8LAK5 EnsemblPlants:AT4G30330.1 GeneID:829156
KEGG:ath:AT4G30330 TAIR:At4g30330 InParanoid:Q8LAK5
PhylomeDB:Q8LAK5 ProtClustDB:CLSN2683057 Genevestigator:Q8LAK5
Uniprot:Q8LAK5
Length = 88
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 6 QPPDLK-KYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--DIG 58
QP +L +++ K +I++ + I G + GFD++MNLV+D EV+ +K +G
Sbjct: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLG 71
Query: 59 MVVIRGNSV 67
++++G+++
Sbjct: 72 RILLKGDNI 80
>UNIPROTKB|Q9TU66 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:13616 "Monodelphis domestica" [GO:0005683 "U7
snRNP" evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
EMBL:AF134827 RefSeq:NP_001029144.1 UniGene:Mdm.222
ProteinModelPortal:Q9TU66 SMR:Q9TU66 STRING:Q9TU66 PRIDE:Q9TU66
GeneID:554245 KEGG:mdo:554245 InParanoid:Q9TU66 Uniprot:Q9TU66
Length = 240
Score = 90 (36.7 bits), Expect = 0.00076, P = 0.00076
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>ZFIN|ZDB-GENE-040426-1819 [details] [associations]
symbol:snrpb "small nuclear ribonucleoprotein
polypeptides B and B1" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1819 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HSSP:P14678 KO:K11086 CTD:6628
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
EMBL:CU929339 EMBL:AF259079 EMBL:BC065601 IPI:IPI00498167
RefSeq:NP_991230.1 UniGene:Dr.30320 SMR:Q9I9E5 STRING:Q9I9E5
Ensembl:ENSDART00000011663 GeneID:402966 KEGG:dre:402966
InParanoid:Q9I9E5 NextBio:20816775 Uniprot:Q9I9E5
Length = 239
Score = 89 (36.4 bits), Expect = 0.00097, P = 0.00097
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
>UNIPROTKB|Q9PV94 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11086 CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 EMBL:AF134830 IPI:IPI00603436
RefSeq:NP_989930.1 UniGene:Gga.3086 ProteinModelPortal:Q9PV94
SMR:Q9PV94 STRING:Q9PV94 PRIDE:Q9PV94 Ensembl:ENSGALT00000011732
GeneID:395298 KEGG:gga:395298 InParanoid:Q9PV94 OMA:KNNKMIQ
NextBio:20815383 ArrayExpress:Q9PV94 Uniprot:Q9PV94
Length = 240
Score = 89 (36.4 bits), Expect = 0.00098, P = 0.00098
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-D----------NTVEVNGNE 53
G+ + +++D +++ L R+ +GT + FD+ MNL++ D N+ + E
Sbjct: 4 GKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREE 63
Query: 54 KNDIGMVVIRGNSVV--TVEALEP 75
K +G+V++RG ++V TVE P
Sbjct: 64 KRVLGLVLLRGENLVSMTVEGPPP 87
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 80 80 0.00091 102 3 11 23 0.43 29
29 0.41 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 116
No. of states in DFA: 412 (44 KB)
Total size of DFA: 73 KB (2063 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.64u 0.17s 8.81t Elapsed: 00:00:00
Total cpu time: 8.65u 0.17s 8.82t Elapsed: 00:00:00
Start: Fri May 10 03:08:20 2013 End: Fri May 10 03:08:20 2013
WARNINGS ISSUED: 1