BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034890
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/79 (89%), Positives = 76/79 (96%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMV 60
MSRSGQPPDLKKYMDKKLQIKLNANRM+ GTLRGFDQFMNLV+DNTVEVNGN+K DIGMV
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 60
Query: 61 VIRGNSVVTVEALEPVSKS 79
VIRGNS+VTVEALEPV +S
Sbjct: 61 VIRGNSIVTVEALEPVGRS 79
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/76 (92%), Positives = 72/76 (94%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMV 60
MS SGQPP LKKYMDK+LQI L ANRMIVGTLRGFDQFMNLV+DNTVEVNGNEKNDIGMV
Sbjct: 1 MSTSGQPPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 60
Query: 61 VIRGNSVVTVEALEPV 76
VIRGNSVVTVEALEPV
Sbjct: 61 VIRGNSVVTVEALEPV 76
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGM 59
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGM
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGM 59
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGM
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGM 59
MS++ PP+LKK+MDKKL +KLN R + G LRGFD FMNLVID VE+ ++N+IGM
Sbjct: 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS++ +EALE V
Sbjct: 60 VVIRGNSIIMLEALERV 76
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 61/77 (79%), Gaps = 2/77 (2%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV-EVNGNEKNDIGM 59
MS++ PP++KKYMDK++ +KLN R + G LRGFD FMN+V+D+TV E N KN+IGM
Sbjct: 1 MSKA-HPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGM 59
Query: 60 VVIRGNSVVTVEALEPV 76
VVIRGNS+V VEAL+ V
Sbjct: 60 VVIRGNSIVMVEALDRV 76
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 4/78 (5%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV--NGNEKNDIG 58
MS++ PP+LKK+ DKK +KLN R + G LRGFD FMNLVID VE+ +G +KN IG
Sbjct: 1 MSKA-HPPELKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IG 58
Query: 59 MVVIRGNSVVTVEALEPV 76
MV IRGNS++ +EALE V
Sbjct: 59 MVEIRGNSIIMLEALERV 76
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 8 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNS 66
PDL K +DKKL IKLN NR + G LRGFD FMN+ + +TVE V+ EK +IGMV+IRGNS
Sbjct: 9 PDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNS 68
Query: 67 VVTVEALEPVS 77
++ +E LE ++
Sbjct: 69 ILLMEPLESMA 79
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 57/78 (73%), Gaps = 2/78 (2%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN-DIGM 59
MS++ PP+LKKYMDK++ +KLN NR + G LRGFD FMN+VID VE + + ++GM
Sbjct: 1 MSKT-HPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGM 59
Query: 60 VVIRGNSVVTVEALEPVS 77
VIRGNSVV +E E +S
Sbjct: 60 TVIRGNSVVIMEPKERIS 77
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 61/79 (77%), Gaps = 4/79 (5%)
Query: 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIG 58
MS++G PDLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E V+G EK IG
Sbjct: 1 MSKAG-APDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIG 58
Query: 59 MVVIRGNSVVTVEALEPVS 77
V IRGNSV+ +E L+ ++
Sbjct: 59 SVAIRGNSVIMIETLDKMT 77
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 56/73 (76%), Gaps = 4/73 (5%)
Query: 8 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNE---KNDIGM-VVIR 63
P+LKKYMDKK+ + +N +R + G LRG+D F+N+V+D+ +E+NG + + +G+ VIR
Sbjct: 5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTVIR 64
Query: 64 GNSVVTVEALEPV 76
GNS++++EAL+ +
Sbjct: 65 GNSIISLEALDAI 77
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 12/78 (15%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKND------------ 56
DL KY D K+++KL ++++G L+G+DQ MNLV+D+TVE N ++
Sbjct: 29 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 88
Query: 57 IGMVVIRGNSVVTVEALE 74
+G+ VIRG +V++ + E
Sbjct: 89 LGLTVIRGTILVSLSSAE 106
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN--------DIGMV 60
DL +Y D+++Q R I G L+GFDQ MNLV+D+ E N ++ +G+V
Sbjct: 27 DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86
Query: 61 VIRGNSVVTVEALE 74
V+RG ++V + ++
Sbjct: 87 VVRGTTLVLIAPMD 100
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7
OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 12/80 (15%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE---------VNGNEKNDIGM 59
DL+K++ K++ +K R + G L+G+DQ +N+ +D T E + +EK +G+
Sbjct: 14 DLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGL 73
Query: 60 VVIRGNSVVTV---EALEPV 76
VV RG+SV+ V E EP+
Sbjct: 74 VVCRGSSVMMVCPTEGCEPI 93
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGN---------EKNDIGM 59
DL KY+DK +++K R G L+GFD +NLV+D T+E + + +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 60 VVIRGNSVVTV 70
VV RG SVV +
Sbjct: 74 VVCRGTSVVLI 84
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGN---------EKNDIGM 59
DL KY+DK +++K R G L+GFD +NLV+D T+E + + +G+
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGL 73
Query: 60 VVIRGNSVVTV 70
VV RG SVV +
Sbjct: 74 VVCRGTSVVLI 84
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2
Length = 85
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 2 SRSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGM 59
+++G P D LK + K + ++LN+ G L D +MN+ ++ TVE V+G +KN G
Sbjct: 10 AKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGD 69
Query: 60 VVIRGNSVVTVEALE 74
IRGN+V+ + ALE
Sbjct: 70 AFIRGNNVMYITALE 84
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y+++ + + + RMIVGTL+GFDQ +NL++D + E G E+ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSVVTVEALEPVSKS 79
++V + ++ + S
Sbjct: 65 DNVAVIGEIDEETDS 79
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y+++ + + + RMIVGTL+GFDQ +NL++D + E G E+ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSVVTVEALEPVSKS 79
++V + ++ + S
Sbjct: 65 DNVAVIGEIDEETDS 79
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y+++ + + + RMIVGTL+GFDQ +NL++D + E G E+ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSVVTVEALEPVSKS 79
++V + ++ + S
Sbjct: 65 DNVAVIGEIDEETDS 79
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-----VNGNEKNDIGMVVIRG 64
L+ Y+++ + + + RMIVGTL+GFDQ +NL++D + E G E+ +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 65 NSVVTVEALEPVSKS 79
++V + ++ + S
Sbjct: 65 DNVAVIGEIDEETDS 79
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKND--IGMVVIRGNSVVT 69
+DKKL + L R +G +R FDQF N+V+ +T+E G+ +D +G+ IRG++VV
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 70 VEALEPVSKSQ 80
+ ++P + Q
Sbjct: 69 LGEIDPDKEVQ 79
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 4 SGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKN-DIGMVV 61
S +P D L + ++ + ++L R G L+G+D MNLV+DN E+ NE + +G ++
Sbjct: 2 SQRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTII 61
Query: 62 IRGNSVVTV 70
+RG++VV V
Sbjct: 62 VRGDTVVYV 70
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 2 SRSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGM 59
+ +G P D LK + K++ ++L + G L D +MN+ ++ T E VNG N G
Sbjct: 23 THTGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGD 82
Query: 60 VVIRGNSVVTVEALEPV 76
IRGN+V+ + A EP+
Sbjct: 83 AFIRGNNVLYISAAEPI 99
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 30 GTLRGFDQFMNLVIDNTVEVNG-NEKNDIGMVVIRGNSVVTVEAL 73
G +RGFD+FMN+V+D+ V+V+ N K ++G ++++G+++ ++A+
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 13/85 (15%)
Query: 4 SGQPPDLK--KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV---------NGN 52
SG P K +Y++ ++++ + R+IVG FD+ MN+VI + E +
Sbjct: 2 SGMPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDRE 61
Query: 53 EKNDIGMVVIRGNSVV--TVEALEP 75
EK +GM++IRG +VV +VEA P
Sbjct: 62 EKRTLGMILIRGETVVSMSVEAPPP 86
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 7 PPDLKKY-MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE----VNGNEKND----I 57
P DL K +D+++ IKL R +VGTL+ FD N+V+ + VE +N E ++
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 58 GMVVIRGNSVVTV 70
MV IRG++V +
Sbjct: 64 EMVFIRGDTVTLI 76
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 6/63 (9%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKN-----DIGMVVIRGNSV 67
+D+K+ + L RM+ G LR FDQ+ NL++ + VE + +E+N D G+ +IRG +V
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
Query: 68 VTV 70
V +
Sbjct: 110 VML 112
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1
PE=2 SV=1
Length = 133
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDI--GMVVIRGNSVV 68
+DKK + L R ++G LR DQF NLV+ TVE G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVV 72
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm6 PE=1 SV=1
Length = 75
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVV 68
L K + KK+ I+L++ G L D +MNL ++ T E VNG + N G IRGN+V+
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVL 68
Query: 69 TVEALE 74
V AL+
Sbjct: 69 YVSALD 74
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 4 SGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVV 61
+ +P D L +D + ++L R G L+G+D MNLV+DN E+ G + G VV
Sbjct: 2 ANRPLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVV 61
Query: 62 IRGNSVVTV 70
IRG++VV V
Sbjct: 62 IRGDNVVYV 70
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDI--GMVVIRGNSVV 68
+DKK + L R ++G LR DQF NLV+ TVE G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVV 72
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDI--GMVVIRGNSVV 68
+DKK + L R ++G LR DQF NLV+ TVE G + DI G+ V+RG +VV
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVV 72
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N+ + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B'
OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N+ + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N+ + EK +G+V
Sbjct: 11 QHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos
taurus GN=SNRPB PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N+ + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N+ + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 13 YMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTV 70
Y+D + +KL + I G L+ +DQ +N+++ + E+ +G+ ++RG+SVV +
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIRRLGLTLVRGDSVVVI 73
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N+ + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N+ + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE-VNGNEKNDIGMVVIRGNSVV 68
LK + + + I + NR G L G+D +MN+V+ N E +NG K V++RG++V+
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVI 73
Query: 69 TV 70
V
Sbjct: 74 FV 75
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEV-NGNEKNDIGMVVIRGNSVV 68
L + + + ++L R GTL G+D MNLV+ + E+ NG +G VVIRG++VV
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVV 68
Query: 69 TV 70
V
Sbjct: 69 FV 70
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 12 KYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI-----------DNTVEVNGNEKNDIGMV 60
+++D +++ L R+ +GT + FD+ MNL++ N + EK +G+V
Sbjct: 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLV 70
Query: 61 VIRGNSVV--TVEALEP 75
++RG ++V TVE P
Sbjct: 71 LLRGENLVSMTVEGPPP 87
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDI--GMVVIRGN 65
L Y+D+K+ + L + ++G LR FDQF NL++ T+E + DI G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 66 SVVTVEALE 74
+VV + L+
Sbjct: 76 NVVLLGELD 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,816,067
Number of Sequences: 539616
Number of extensions: 935195
Number of successful extensions: 1902
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1757
Number of HSP's gapped (non-prelim): 134
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)