Query 034890
Match_columns 80
No_of_seqs 123 out of 1104
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_G Small nuclear ribonucle 99.9 9.9E-27 3.4E-31 136.7 8.4 75 1-76 1-76 (76)
2 3s6n_F Small nuclear ribonucle 99.9 6.9E-26 2.4E-30 136.0 8.7 77 1-77 1-79 (86)
3 1i8f_A Putative snRNP SM-like 99.9 9E-26 3.1E-30 133.9 8.8 74 1-74 1-80 (81)
4 1h64_1 SnRNP SM-like protein; 99.9 9.8E-26 3.4E-30 131.8 8.8 70 6-75 4-75 (75)
5 1i4k_A Putative snRNP SM-like 99.9 2.1E-25 7.2E-30 130.8 8.8 70 6-75 4-75 (77)
6 1th7_A SnRNP-2, small nuclear 99.9 4.1E-25 1.4E-29 131.0 8.9 75 1-75 3-80 (81)
7 1mgq_A SM-like protein; LSM, R 99.9 1.1E-24 3.7E-29 129.8 10.4 71 2-72 11-83 (83)
8 4emk_B U6 snRNA-associated SM- 99.9 2.2E-25 7.6E-30 130.5 6.4 73 1-75 1-75 (75)
9 1ljo_A Archaeal SM-like protei 99.9 8E-25 2.7E-29 128.5 8.6 70 6-75 5-77 (77)
10 1d3b_A Protein (small nuclear 99.9 1.8E-24 6.2E-29 126.8 9.2 70 5-74 4-75 (75)
11 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.1E-24 3.8E-29 133.0 8.6 72 6-77 10-90 (96)
12 4emk_A U6 snRNA-associated SM- 99.9 2E-24 6.7E-29 131.8 9.5 72 3-74 17-91 (94)
13 4emg_A Probable U6 snRNA-assoc 99.9 3.6E-24 1.2E-28 130.1 10.0 69 5-73 8-91 (93)
14 1d3b_B Protein (small nuclear 99.9 2.2E-24 7.6E-29 130.0 8.7 70 7-76 6-86 (91)
15 4emk_C U6 snRNA-associated SM- 99.9 9E-24 3.1E-28 132.5 10.1 72 6-77 24-103 (113)
16 4emh_A Probable U6 snRNA-assoc 99.9 6.8E-24 2.3E-28 131.6 9.4 73 6-78 16-91 (105)
17 1n9r_A SMF, small nuclear ribo 99.9 6.6E-24 2.3E-28 129.1 9.1 70 6-75 21-93 (93)
18 1b34_A Protein (small nuclear 99.9 5.2E-23 1.8E-27 129.8 8.6 70 7-76 3-74 (119)
19 2y9a_D Small nuclear ribonucle 99.9 8.8E-23 3E-27 130.1 9.7 75 5-79 4-80 (126)
20 3s6n_E Small nuclear ribonucle 99.9 2.2E-23 7.4E-28 126.7 6.0 70 6-75 16-92 (92)
21 2fwk_A U6 snRNA-associated SM- 99.9 2.5E-23 8.4E-28 131.6 5.2 71 6-76 28-115 (121)
22 3pgw_B SM B; protein-RNA compl 99.9 2.4E-22 8.4E-27 138.5 9.1 70 6-75 5-85 (231)
23 1b34_B Protein (small nuclear 99.9 4.2E-22 1.4E-26 125.4 8.6 73 5-77 26-116 (118)
24 1m5q_A SMAP3, small nuclear ri 99.8 9.6E-21 3.3E-25 121.2 9.0 65 9-76 4-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.3 2.8E-12 9.4E-17 76.8 6.5 66 5-75 7-73 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.5 0.0017 5.7E-08 38.7 9.0 66 11-76 9-85 (88)
27 2ylb_A Protein HFQ; RNA-bindin 97.3 0.00025 8.4E-09 41.0 3.6 55 10-76 14-70 (74)
28 2fb7_A SM-like protein, LSM-14 97.3 0.0016 5.5E-08 39.2 7.1 68 10-77 14-92 (95)
29 1kq1_A HFQ, HOST factor for Q 97.2 0.0003 1E-08 41.0 3.3 55 10-75 12-68 (77)
30 1u1s_A HFQ protein; SM-like ba 97.2 0.00036 1.2E-08 41.1 3.6 34 10-43 12-47 (82)
31 3ahu_A Protein HFQ; SM-like mo 97.1 0.0026 9E-08 37.0 6.7 51 15-76 23-73 (78)
32 2vc8_A Enhancer of mRNA-decapp 97.1 0.0012 4.3E-08 38.9 5.3 62 11-74 5-68 (84)
33 3sb2_A Protein HFQ; SM-like, R 97.0 0.00085 2.9E-08 39.2 4.2 55 10-76 13-69 (79)
34 4a53_A EDC3; RNA binding prote 96.9 0.0074 2.5E-07 37.9 7.8 60 8-77 5-66 (125)
35 2y90_A Protein HFQ; RNA-bindin 96.8 0.00076 2.6E-08 41.3 2.9 54 10-75 14-69 (104)
36 1ycy_A Conserved hypothetical 96.8 0.011 3.8E-07 33.3 7.1 60 10-73 11-70 (71)
37 1y96_B Gemin7, SIP3, GEM-assoc 96.7 0.01 3.6E-07 35.0 7.1 59 10-72 24-83 (85)
38 2qtx_A Uncharacterized protein 96.7 0.0061 2.1E-07 34.9 5.7 31 14-44 24-54 (71)
39 2rm4_A CG6311-PB, DM EDC3; enh 95.5 0.14 4.8E-06 30.9 7.9 64 11-77 8-74 (103)
40 3hfn_A ASL2047 protein; HFQ, S 95.4 0.11 3.7E-06 29.7 6.8 53 10-72 16-70 (72)
41 3hfo_A SSR3341 protein; HFQ, S 95.2 0.093 3.2E-06 29.8 6.2 53 10-72 14-68 (70)
42 3rux_A BIRA bifunctional prote 93.7 0.12 3.9E-06 35.7 5.0 34 13-46 222-255 (270)
43 1ib8_A Conserved protein SP14. 93.4 0.052 1.8E-06 35.1 2.7 33 10-43 99-135 (164)
44 2eay_A Biotin [acetyl-COA-carb 91.0 0.17 5.9E-06 33.9 3.1 46 14-64 187-232 (233)
45 1bia_A BIRA bifunctional prote 89.2 0.88 3E-05 31.7 5.6 48 13-64 271-318 (321)
46 2ej9_A Putative biotin ligase; 87.3 1 3.4E-05 30.2 4.7 32 13-45 190-221 (237)
47 2dxu_A Biotin--[acetyl-COA-car 84.5 0.91 3.1E-05 30.5 3.4 30 14-45 188-217 (235)
48 3rkx_A Biotin-[acetyl-COA-carb 82.1 1.8 6.3E-05 30.3 4.3 32 13-45 277-308 (323)
49 3bfm_A Biotin protein ligase-l 82.0 2.4 8.3E-05 28.1 4.7 29 13-46 192-220 (235)
50 2e12_A SM-like motif, hypothet 81.1 1.9 6.5E-05 25.6 3.5 18 15-32 28-45 (101)
51 2xk0_A Polycomb protein PCL; t 77.8 6.5 0.00022 22.1 4.8 35 14-48 18-53 (69)
52 4hcz_A PHD finger protein 1; p 72.4 6.4 0.00022 21.4 3.8 26 14-39 6-31 (58)
53 2eqj_A Metal-response element- 69.8 7.9 0.00027 21.5 3.9 25 14-38 16-40 (66)
54 4a8c_A Periplasmic PH-dependen 68.0 19 0.00064 25.9 6.6 32 16-47 88-119 (436)
55 2qqr_A JMJC domain-containing 59.4 13 0.00044 22.8 3.8 23 14-36 8-30 (118)
56 1ky9_A Protease DO, DEGP, HTRA 58.8 16 0.00055 26.5 4.8 32 16-47 111-142 (448)
57 1sg5_A ORF, hypothetical prote 55.6 3.5 0.00012 23.9 0.7 21 13-33 23-43 (86)
58 3stj_A Protease DEGQ; serine p 50.9 22 0.00077 24.7 4.4 31 16-46 88-118 (345)
59 2m0o_A PHD finger protein 1; t 49.3 8.6 0.00029 22.0 1.6 25 14-38 29-53 (79)
60 3sti_A Protease DEGQ; serine p 46.7 25 0.00086 23.3 3.9 31 16-46 88-118 (245)
61 3pv2_A DEGQ; trypsin fold, PDZ 46.3 22 0.00074 25.8 3.8 32 16-47 102-133 (451)
62 3lgi_A Protease DEGS; stress-s 45.1 37 0.0013 22.0 4.5 32 16-47 77-108 (237)
63 1x4r_A PARP14 protein; WWE dom 45.1 1.1 3.8E-05 26.9 -2.7 20 29-48 34-53 (99)
64 3fb9_A Uncharacterized protein 44.9 16 0.00056 21.4 2.4 27 9-35 19-49 (90)
65 3tjo_A Serine protease HTRA1; 44.2 40 0.0014 21.8 4.6 33 15-47 86-118 (231)
66 2e5p_A Protein PHF1, PHD finge 43.4 41 0.0014 18.6 3.8 25 14-38 12-36 (68)
67 1y8t_A Hypothetical protein RV 42.4 36 0.0012 23.1 4.3 32 16-47 64-95 (324)
68 1te0_A Protease DEGS; two doma 42.0 38 0.0013 22.9 4.4 32 16-47 66-97 (318)
69 1lcy_A HTRA2 serine protease; 42.0 40 0.0014 23.0 4.5 32 16-47 71-102 (325)
70 2p5z_X Type VI secretion syste 41.1 52 0.0018 23.7 5.1 30 8-37 56-96 (491)
71 2wr8_A Putative uncharacterize 39.8 28 0.00095 23.9 3.3 20 25-44 171-190 (259)
72 3tee_A Flagella basal BODY P-r 39.7 22 0.00075 23.5 2.7 22 13-34 169-190 (219)
73 3qx1_A FAS-associated factor 1 39.6 20 0.00069 19.7 2.3 21 16-36 8-28 (84)
74 2xdp_A Lysine-specific demethy 38.4 45 0.0015 20.4 3.8 22 14-35 67-88 (123)
75 2zbv_A Uncharacterized conserv 38.1 30 0.001 23.7 3.3 20 25-44 167-186 (263)
76 3kl9_A PEPA, glutamyl aminopep 37.3 27 0.00092 24.5 3.0 24 11-34 95-118 (355)
77 1o9y_A HRCQ2; secretory protei 35.0 59 0.002 18.1 3.8 37 9-45 43-79 (84)
78 2qs8_A XAA-Pro dipeptidase; am 34.8 71 0.0024 21.7 4.8 39 34-72 2-42 (418)
79 3num_A Serine protease HTRA1; 34.7 75 0.0026 21.6 4.9 32 16-47 70-101 (332)
80 2e5q_A PHD finger protein 19; 34.5 40 0.0014 18.4 2.8 25 14-38 10-34 (63)
81 3qo6_A Protease DO-like 1, chl 33.1 56 0.0019 22.5 4.1 32 16-47 77-108 (348)
82 3by7_A Uncharacterized protein 32.4 80 0.0027 18.7 5.8 55 19-75 7-77 (100)
83 1zbp_A Hypothetical protein VP 31.7 56 0.0019 22.6 3.8 30 6-35 180-209 (273)
84 3j21_c 50S ribosomal protein L 31.5 78 0.0027 18.3 4.1 34 10-43 35-68 (87)
85 4fln_A Protease DO-like 2, chl 31.0 51 0.0017 24.8 3.8 32 16-47 97-129 (539)
86 2w5e_A Putative serine proteas 29.7 1E+02 0.0035 19.0 5.3 29 16-46 43-71 (163)
87 3uep_A YSCQ-C, type III secret 29.1 79 0.0027 18.1 3.7 37 10-46 48-84 (96)
88 2dzk_A UBX domain-containing p 27.7 54 0.0018 19.1 2.8 22 15-36 13-34 (109)
89 3frn_A Flagellar protein FLGA; 27.5 49 0.0017 23.0 3.0 22 13-34 238-260 (278)
90 1sqr_A 50S ribosomal protein L 26.9 95 0.0032 18.2 3.7 35 10-44 35-69 (95)
91 1wj4_A KIAA0794 protein; UBX d 26.8 41 0.0014 20.2 2.3 21 16-36 44-64 (124)
92 2cr5_A Reproduction 8; UBX dom 26.2 52 0.0018 19.1 2.6 22 15-36 23-44 (109)
93 2cw5_A Bacterial fluorinating 25.8 41 0.0014 23.0 2.3 17 28-44 174-190 (255)
94 1nvp_D Transcription initiatio 25.3 1.1E+02 0.0039 18.1 5.3 28 23-50 52-82 (108)
95 4a4f_A SurviVal of motor neuro 24.8 83 0.0028 16.4 4.7 32 7-38 4-36 (64)
96 3uby_A DNA-3-methyladenine gly 24.2 85 0.0029 21.0 3.6 29 11-39 21-49 (219)
97 3i4o_A Translation initiation 24.1 33 0.0011 19.4 1.3 20 15-34 26-45 (79)
98 4g9s_B Inhibitor of G-type lys 23.3 36 0.0012 19.8 1.5 22 15-36 2-26 (111)
99 2keq_A DNA polymerase III alph 23.3 66 0.0022 19.4 2.7 16 16-31 56-71 (139)
100 3mkv_A Putative amidohydrolase 23.0 1.5E+02 0.0051 18.7 5.0 34 40-73 5-40 (426)
101 1s3s_G P47 protein; AAA ATPase 21.0 37 0.0013 20.4 1.2 22 15-36 52-73 (127)
102 1rqp_A 5'-fluoro-5'-deoxyadeno 20.8 65 0.0022 22.6 2.5 20 25-44 199-219 (299)
103 3p8d_A Medulloblastoma antigen 20.5 1.2E+02 0.004 16.5 4.1 25 14-38 9-33 (67)
104 1o6a_A Putative flagellar moto 20.5 1.2E+02 0.0039 17.2 3.3 36 10-45 48-83 (96)
105 3sz6_A Conserved domain protei 20.4 1.1E+02 0.0036 18.3 3.2 25 4-28 24-48 (121)
106 1l1j_A Heat shock protease HTR 20.4 40 0.0014 22.1 1.3 32 16-47 80-111 (239)
107 2dir_A Thump domain-containing 20.4 1.1E+02 0.0039 17.0 3.2 24 14-37 73-96 (98)
108 2equ_A PHD finger protein 20-l 20.4 1.2E+02 0.0041 16.6 4.1 25 14-38 12-36 (74)
109 2q6k_A Chlorinase; complex wit 20.3 53 0.0018 22.7 2.0 20 25-44 172-192 (283)
No 1
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.94 E-value=9.9e-27 Score=136.69 Aligned_cols=75 Identities=63% Similarity=1.036 Sum_probs=52.5
Q ss_pred CCCCCCCCchhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCCc
Q 034890 1 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 1 M~~~~~p~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
||++ .+++|.+++|++|+|+|+||++|+|+|.+||+|||++|+||.|+. +++.+.+|.++|||++|++|++.|.+
T Consensus 1 ms~~-~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (76)
T 3s6n_G 1 MSKA-HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76 (76)
T ss_dssp --------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC----
T ss_pred CCCc-chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccCC
Confidence 7777 567899999999999999999999999999999999999999985 45678899999999999999998863
No 2
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.93 E-value=6.9e-26 Score=136.02 Aligned_cols=77 Identities=30% Similarity=0.376 Sum_probs=67.6
Q ss_pred CCCCCCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCCcc
Q 034890 1 MSRSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEPVS 77 (80)
Q Consensus 1 M~~~~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~~~ 77 (80)
||....|.. |++++|++|+|+|++|++|+|+|.+||+|||++|+||.|.. +...+.+|.++|||++|++|.++|...
T Consensus 1 ms~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~~ 79 (86)
T 3s6n_F 1 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEE 79 (86)
T ss_dssp --CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC---
T ss_pred CCcCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCccc
Confidence 888888887 89999999999999999999999999999999999999875 446789999999999999999998754
No 3
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.93 E-value=9e-26 Score=133.89 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=64.5
Q ss_pred CCCC-----CCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecC
Q 034890 1 MSRS-----GQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALE 74 (80)
Q Consensus 1 M~~~-----~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d 74 (80)
||++ ..|.. |.++++++|+|+|+||++|+|+|.+||+|||++|+||+|+.+...+.+|.++|||++|++|.++|
T Consensus 1 m~~~~~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 1 MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp ---------CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEECGGGEEEEEECC
T ss_pred CCcccCccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEEcCCcccCCCEEEECCCEEEEEEeCC
Confidence 6665 34555 89999999999999999999999999999999999999986667889999999999999999886
No 4
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.93 E-value=9.8e-26 Score=131.79 Aligned_cols=70 Identities=27% Similarity=0.530 Sum_probs=63.6
Q ss_pred CCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCC
Q 034890 6 QPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
.|.. |.+++|++|+|+|+||+.|+|+|.+||+|||++|+||.|++ +...+.+|.++|||++|++|.++|+
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 4766 89999999999999999999999999999999999999985 5667899999999999999999874
No 5
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.93 E-value=2.1e-25 Score=130.85 Aligned_cols=70 Identities=36% Similarity=0.604 Sum_probs=64.4
Q ss_pred CCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCC
Q 034890 6 QPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
.|.. |.+++|++|+|+|+||+.|+|+|.+||+|||++|+||.|++ +...+++|.++|||++|++|.++|.
T Consensus 4 ~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 4 RPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp CHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC-
T ss_pred cHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCC
Confidence 4766 89999999999999999999999999999999999999986 5567889999999999999999885
No 6
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.92 E-value=4.1e-25 Score=130.96 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=65.0
Q ss_pred CCCCC-CCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCC
Q 034890 1 MSRSG-QPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 1 M~~~~-~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
|+.-. .|.. |.++++++|+|+|+||++|+|+|.+||+|||++|+||+|++ +...+.+|.++|||++|++|.++|+
T Consensus 3 m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 3 MNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred ccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 34433 4555 89999999999999999999999999999999999999986 5567899999999999999999874
No 7
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.92 E-value=1.1e-24 Score=129.81 Aligned_cols=71 Identities=32% Similarity=0.607 Sum_probs=64.4
Q ss_pred CCCCCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEe
Q 034890 2 SRSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEA 72 (80)
Q Consensus 2 ~~~~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~ 72 (80)
+....|.. |.++++++|+|+|+||++|+|+|.+||+|||++|+||+|++ ++..+.+|.++|||++|++|++
T Consensus 11 ~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 11 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp CCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred ccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 44557777 89999999999999999999999999999999999999985 5567899999999999999974
No 8
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.92 E-value=2.2e-25 Score=130.53 Aligned_cols=73 Identities=37% Similarity=0.555 Sum_probs=64.7
Q ss_pred CCCCCCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCC
Q 034890 1 MSRSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 1 M~~~~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
||. .|.. |.+++|++|+|+|+||++|+|+|.+||+|||++|+||.|+. +++.+.+|.++|||++|++|++.|.
T Consensus 1 m~~--~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 75 (75)
T 4emk_B 1 MDS--SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD 75 (75)
T ss_dssp CCS--HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC--
T ss_pred CCC--chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecCC
Confidence 553 4776 89999999999999999999999999999999999999975 5567899999999999999998763
No 9
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.92 E-value=8e-25 Score=128.54 Aligned_cols=70 Identities=30% Similarity=0.623 Sum_probs=63.2
Q ss_pred CCCc-hhhhcCCEEEEEEcCC-eEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCC
Q 034890 6 QPPD-LKKYMDKKLQIKLNAN-RMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l~~g-~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
.|.. |.++++++|+|+|++| ++|+|+|.+||+|||++|+||+|++ ++..+.+|.++|||++|++|.++|+
T Consensus 5 ~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 5 LPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 4555 8999999999999999 9999999999999999999999986 5567899999999999999999874
No 10
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.91 E-value=1.8e-24 Score=126.82 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecC
Q 034890 5 GQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALE 74 (80)
Q Consensus 5 ~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d 74 (80)
..|.. |++++|++|.|+|++|++|+|+|.+||+|||++|+||+|.. +++.+.+|.++|||++|++|..||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 46777 89999999999999999999999999999999999999985 456789999999999999999986
No 11
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-24 Score=133.00 Aligned_cols=72 Identities=35% Similarity=0.566 Sum_probs=63.2
Q ss_pred CCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec--------CceeeeecEEEEcCCcEEEEEecCCc
Q 034890 6 QPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN--------GNEKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~--------~~~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
.|.. |.++++++|+|+|++|++|+|+|.|||+|||++|+||.|++ +...+++|.++|||++|++|.+++..
T Consensus 10 ~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp CHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred hHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 5665 89999999999999999999999999999999999999985 23467899999999999999998875
Q ss_pred c
Q 034890 77 S 77 (80)
Q Consensus 77 ~ 77 (80)
.
T Consensus 90 ~ 90 (96)
T 3bw1_A 90 D 90 (96)
T ss_dssp -
T ss_pred c
Confidence 4
No 12
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.91 E-value=2e-24 Score=131.76 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=63.9
Q ss_pred CCCCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec--CceeeeecEEEEcCCcEEEEEecC
Q 034890 3 RSGQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALE 74 (80)
Q Consensus 3 ~~~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~--~~~~~~~g~v~IrG~~I~~I~~~d 74 (80)
....|++ |.++++++|+|+|++|++|+|+|.+||+|||++|+||+|+. +++.+.+|.++|||++|++|.+..
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC
T ss_pred ccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCC
Confidence 3456777 89999999999999999999999999999999999999986 556789999999999999999764
No 13
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.91 E-value=3.6e-24 Score=130.14 Aligned_cols=69 Identities=25% Similarity=0.534 Sum_probs=61.8
Q ss_pred CCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecC--------------ceeeeecEEEEcCCcEEE
Q 034890 5 GQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNG--------------NEKNDIGMVVIRGNSVVT 69 (80)
Q Consensus 5 ~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~--------------~~~~~~g~v~IrG~~I~~ 69 (80)
..|++ |..+++++|+|+|++|+.|+|+|.|||+|||++|+||+|++. ...+.+|.++|||++|++
T Consensus 8 ~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~ 87 (93)
T 4emg_A 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVIL 87 (93)
T ss_dssp -CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEE
T ss_pred CCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEE
Confidence 68898 567799999999999999999999999999999999999862 246889999999999999
Q ss_pred EEec
Q 034890 70 VEAL 73 (80)
Q Consensus 70 I~~~ 73 (80)
|+++
T Consensus 88 I~p~ 91 (93)
T 4emg_A 88 IAPP 91 (93)
T ss_dssp EECC
T ss_pred EEec
Confidence 9975
No 14
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.91 E-value=2.2e-24 Score=130.02 Aligned_cols=70 Identities=27% Similarity=0.568 Sum_probs=62.8
Q ss_pred CCchhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-----------CceeeeecEEEEcCCcEEEEEecCC
Q 034890 7 PPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-----------GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 7 p~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-----------~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
..+|.++++++|+|+|+||++|+|+|.|||+|||++|+||+|++ +...+.+|.++|||++|++|.++++
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 45699999999999999999999999999999999999999963 2346889999999999999999875
Q ss_pred c
Q 034890 76 V 76 (80)
Q Consensus 76 ~ 76 (80)
-
T Consensus 86 ~ 86 (91)
T 1d3b_B 86 P 86 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.91 E-value=9e-24 Score=132.46 Aligned_cols=72 Identities=35% Similarity=0.650 Sum_probs=57.3
Q ss_pred CCCchhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecC--------ceeeeecEEEEcCCcEEEEEecCCcc
Q 034890 6 QPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNG--------NEKNDIGMVVIRGNSVVTVEALEPVS 77 (80)
Q Consensus 6 ~p~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~--------~~~~~~g~v~IrG~~I~~I~~~d~~~ 77 (80)
.+++|.++++++|+|+|+|||+|+|+|.|||+||||+|+||+|++. ...+.+|.++|||++|++|+++|...
T Consensus 24 ~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~e 103 (113)
T 4emk_C 24 SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSE 103 (113)
T ss_dssp --------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC---
T ss_pred hHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCccc
Confidence 3466999999999999999999999999999999999999999863 35789999999999999999988643
No 16
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.91 E-value=6.8e-24 Score=131.59 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=55.0
Q ss_pred CCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec--CceeeeecEEEEcCCcEEEEEecCCccC
Q 034890 6 QPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALEPVSK 78 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~--~~~~~~~g~v~IrG~~I~~I~~~d~~~~ 78 (80)
.|.. |.+++|++|+|+|++|++|+|+|.+||+|||++|+||+|.. ++..+.+|.++|||++|++|..+|.++.
T Consensus 16 ~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d 91 (105)
T 4emh_A 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLS 91 (105)
T ss_dssp ----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC------
T ss_pred cHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhh
Confidence 4666 89999999999999999999999999999999999999874 4467899999999999999999998653
No 17
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.91 E-value=6.6e-24 Score=129.10 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=62.0
Q ss_pred CCCc-hhhhcCCEEEEEEcCC-eEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCC
Q 034890 6 QPPD-LKKYMDKKLQIKLNAN-RMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l~~g-~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
.|.. |.+++|++|+|+|++| ++|+|+|.+||+|||++|+||+|+. +++.+.+|.++|||++|++|.+++.
T Consensus 21 ~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~~ 93 (93)
T 1n9r_A 21 NPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELPN 93 (93)
T ss_dssp -----CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECCC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCCC
Confidence 4555 8999999999999999 9999999999999999999999985 5667899999999999999998874
No 18
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.89 E-value=5.2e-23 Score=129.82 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=64.2
Q ss_pred CCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCCc
Q 034890 7 PPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 7 p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
|+. |+++++++|.|+|++|++|+|+|.+||+|||++|+||+|+. +.+.+.++.+||||++|++|.++|.+
T Consensus 3 p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l 74 (119)
T 1b34_A 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSL 74 (119)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTC
T ss_pred hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEecccc
Confidence 444 89999999999999999999999999999999999999985 44567899999999999999999975
No 19
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.89 E-value=8.8e-23 Score=130.07 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=68.0
Q ss_pred CCCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-CceeeeecEEEEcCCcEEEEEecCCccCC
Q 034890 5 GQPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-GNEKNDIGMVVIRGNSVVTVEALEPVSKS 79 (80)
Q Consensus 5 ~~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-~~~~~~~g~v~IrG~~I~~I~~~d~~~~~ 79 (80)
..|.. |.++++++|.|+|++|++|+|+|.+||+|||++|+||+|+. +++...++.+||||++|+||.++|.++..
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~ 80 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNA 80 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSS
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccch
Confidence 46777 89999999999999999999999999999999999999985 44577899999999999999999987543
No 20
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.89 E-value=2.2e-23 Score=126.66 Aligned_cols=70 Identities=26% Similarity=0.666 Sum_probs=62.5
Q ss_pred CCCc-hhhhcCCEEEEEE----cCCeEEEEEEEEECCCCceEEcceEEec--CceeeeecEEEEcCCcEEEEEecCC
Q 034890 6 QPPD-LKKYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVIDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l----~~g~~~~G~L~~~D~~~NlvL~~~~e~~--~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
.|++ |.++++++++|++ ++|++|+|+|.|||+|||++|+||+|+. ++..+.+|.++|||++|++|++.++
T Consensus 16 ~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~~ 92 (92)
T 3s6n_E 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN 92 (92)
T ss_dssp CHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC--
T ss_pred CCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCCC
Confidence 4666 7899999999999 9999999999999999999999999986 4567889999999999999998763
No 21
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.88 E-value=2.5e-23 Score=131.59 Aligned_cols=71 Identities=23% Similarity=0.507 Sum_probs=62.2
Q ss_pred CCCc-hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-----------Cce-----eeeecEEEEcCCcEE
Q 034890 6 QPPD-LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-----------GNE-----KNDIGMVVIRGNSVV 68 (80)
Q Consensus 6 ~p~~-L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-----------~~~-----~~~~g~v~IrG~~I~ 68 (80)
.|+. |.++++++|+|+|++|+.|+|+|.|||+||||+|+||+|++ +.. .+.+|.++|||++|+
T Consensus 28 ~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv 107 (121)
T 2fwk_A 28 LPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVA 107 (121)
T ss_dssp CHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEE
T ss_pred CcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEE
Confidence 4555 78999999999999999999999999999999999999876 213 678999999999999
Q ss_pred EEEecCCc
Q 034890 69 TVEALEPV 76 (80)
Q Consensus 69 ~I~~~d~~ 76 (80)
+|...++-
T Consensus 108 ~I~~~~~~ 115 (121)
T 2fwk_A 108 MLVPGGDP 115 (121)
T ss_dssp EEESSSCC
T ss_pred EEEecCCC
Confidence 99987653
No 22
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.87 E-value=2.4e-22 Score=138.50 Aligned_cols=70 Identities=27% Similarity=0.584 Sum_probs=63.5
Q ss_pred CCCchhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEec-----------CceeeeecEEEEcCCcEEEEEecC
Q 034890 6 QPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVN-----------GNEKNDIGMVVIRGNSVVTVEALE 74 (80)
Q Consensus 6 ~p~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~-----------~~~~~~~g~v~IrG~~I~~I~~~d 74 (80)
...+|.++++++|+|+|+|||+|+|+|++||+||||+|+||+|++ +.+.+++|++||||+||++|+..+
T Consensus 5 k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~ 84 (231)
T 3pgw_B 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (231)
T ss_pred chHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecC
Confidence 446799999999999999999999999999999999999999975 235789999999999999999876
Q ss_pred C
Q 034890 75 P 75 (80)
Q Consensus 75 ~ 75 (80)
.
T Consensus 85 p 85 (231)
T 3pgw_B 85 P 85 (231)
T ss_pred C
Confidence 4
No 23
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.87 E-value=4.2e-22 Score=125.39 Aligned_cols=73 Identities=23% Similarity=0.439 Sum_probs=62.2
Q ss_pred CCCCc-hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCc---------------eeeeecEEEEcCCc
Q 034890 5 GQPPD-LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGN---------------EKNDIGMVVIRGNS 66 (80)
Q Consensus 5 ~~p~~-L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~---------------~~~~~g~v~IrG~~ 66 (80)
..|+. |.+++ +++|.|+|++|+.|+|+|.|||+|||++|+||+|++.. ..+.+|.+||||++
T Consensus 26 ~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~n 105 (118)
T 1b34_B 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 105 (118)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred cChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCE
Confidence 36776 78888 59999999999999999999999999999999998511 14579999999999
Q ss_pred EEEEEecCCcc
Q 034890 67 VVTVEALEPVS 77 (80)
Q Consensus 67 I~~I~~~d~~~ 77 (80)
|++|.+.+...
T Consensus 106 Vv~I~~~~~~~ 116 (118)
T 1b34_B 106 VIVVLRNPLIA 116 (118)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEeCchhh
Confidence 99999987643
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.84 E-value=9.6e-21 Score=121.18 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=60.7
Q ss_pred chhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecCCc
Q 034890 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 9 ~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
.|.+++|++|.|+|++|+.|+|+|.+||+|||++|+||.|..+ +.+|.++|||++|++|..+|..
T Consensus 4 ~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~~---~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 4 ELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAG---EKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTTC---CEEEEEEECGGGEEEEEECCCC
T ss_pred HHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEcC---CEeceEEEeCCeEEEEEcCCcc
Confidence 4889999999999999999999999999999999999999753 5799999999999999999875
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=76.82 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=57.9
Q ss_pred CCCCchhhhcCCEEEEEEcCCeEEEEEEEEEC-CCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecCC
Q 034890 5 GQPPDLKKYMDKKLQIKLNANRMIVGTLRGFD-QFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 5 ~~p~~L~~~~~k~V~V~l~~g~~~~G~L~~~D-~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
..|.+|.+++||+|.|.|.||+.|+|.|.+|| ..+|++|.|+.+ ++ .+..++|.|..|..|...+.
T Consensus 7 ~~p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~--~~---~~~~~iI~G~aI~eI~v~~~ 73 (86)
T 1y96_A 7 KGPLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE--DG---SMSVTGIMGHAVQTVETMNE 73 (86)
T ss_dssp SCHHHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT--TS---CEEEEEECGGGEEEEEEEEC
T ss_pred CCHHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc--CC---eEEEEEEecceEEEEEEecc
Confidence 36888999999999999999999999999999 999999999922 22 35799999999999987654
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.50 E-value=0.0017 Score=38.69 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=54.0
Q ss_pred hhhcCCEEEEEEcCCeEEEEEEEEEC-CCCceEEcceEEecCc----------eeeeecEEEEcCCcEEEEEecCCc
Q 034890 11 KKYMDKKLQIKLNANRMIVGTLRGFD-QFMNLVIDNTVEVNGN----------EKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 11 ~~~~~k~V~V~l~~g~~~~G~L~~~D-~~~NlvL~~~~e~~~~----------~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
..++|++|.+..+.+-.|+|+|..+| +..-+.|.|+..+..+ ...-+..+..||+.|.-+...+..
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~~ 85 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNNH 85 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCCC
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEeccC
Confidence 45899999999999999999999999 7788999999876411 112367899999999999877653
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.30 E-value=0.00025 Score=41.02 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=42.7
Q ss_pred hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecCCc
Q 034890 10 LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 10 L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
|+.+. ..+|.|.|.||..++|++.+||+|+=+.- + + ...+|--..|.+|.+..++
T Consensus 14 L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~-~-----~------~~~LIYKhAIsTI~p~~~v 70 (74)
T 2ylb_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK-N-----T------VSQMVYKHAISTVVPSRPV 70 (74)
T ss_dssp HHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE-S-----S------SEEEEEGGGEEEEEESSCC
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE-C-----C------ceEEEEeeeEEEEeEcccc
Confidence 55554 67999999999999999999999975443 2 1 2567778888888877654
No 28
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=97.27 E-value=0.0016 Score=39.22 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=53.8
Q ss_pred hhhhcCCEEEEEEcCCeEEEEEEEEEC-CCCceEEcceEEecCc----------eeeeecEEEEcCCcEEEEEecCCcc
Q 034890 10 LKKYMDKKLQIKLNANRMIVGTLRGFD-QFMNLVIDNTVEVNGN----------EKNDIGMVVIRGNSVVTVEALEPVS 77 (80)
Q Consensus 10 L~~~~~k~V~V~l~~g~~~~G~L~~~D-~~~NlvL~~~~e~~~~----------~~~~~g~v~IrG~~I~~I~~~d~~~ 77 (80)
-..++|++|.+..+.+-.|+|+|..+| +..-+.|+|+..+..+ ...-+..+..||+.|.-+...+.-+
T Consensus 14 ~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~p~ 92 (95)
T 2fb7_A 14 GTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPK 92 (95)
T ss_dssp --CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCCSC
T ss_pred cCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecCCC
Confidence 467899999999999999999999999 7888999998755311 1123578999999999998866543
No 29
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.21 E-value=0.0003 Score=40.96 Aligned_cols=55 Identities=11% Similarity=0.255 Sum_probs=37.6
Q ss_pred hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecCC
Q 034890 10 LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 10 L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
|+.+. ..+|.|.|.||..++|++.+||+|+=+.-.+ +. ..+|--..|.+|.+..+
T Consensus 12 Ln~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~-----g~------~qLIYKhAISTI~p~~~ 68 (77)
T 1kq1_A 12 LENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ-----GK------QHLIYKHAISTYTVETE 68 (77)
T ss_dssp HHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET-----TE------EEEEEGGGEEEEEC---
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC-----Ce------eEEEEeeeEEEEeECcc
Confidence 44554 7799999999999999999999997655433 21 34555566666665443
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.20 E-value=0.00036 Score=41.07 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=28.1
Q ss_pred hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEE
Q 034890 10 LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVI 43 (80)
Q Consensus 10 L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL 43 (80)
|..+. ..+|+|.|.||..++|.+.+||+|+=+.-
T Consensus 12 Ln~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 12 LNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 44443 67999999999999999999999985543
No 31
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.11 E-value=0.0026 Score=37.02 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecCCc
Q 034890 15 DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 15 ~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
..+|+|.|.||..++|.+.+||+|+=+.-.+ + ...+|--..|..|.+..++
T Consensus 23 ~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~-----g------~qqlIYKhAISTI~p~~~v 73 (78)
T 3ahu_A 23 NTYVTVFLLNGFQLRGQVKGFDNFTVLLESE-----G------KQQLIYKHAISTFAPQKNV 73 (78)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEEESS-----S------CEEEEEGGGEEEEEESSCC
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceEEEEEEC-----C------eeEEEEcceEEEEeecccc
Confidence 7799999999999999999999998655433 2 1345666667777665544
No 32
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=97.11 E-value=0.0012 Score=38.87 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=50.1
Q ss_pred hhhcCCEEEEEEcCCe-EEEEEEEEECC-CCceEEcceEEecCceeeeecEEEEcCCcEEEEEecC
Q 034890 11 KKYMDKKLQIKLNANR-MIVGTLRGFDQ-FMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALE 74 (80)
Q Consensus 11 ~~~~~k~V~V~l~~g~-~~~G~L~~~D~-~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d 74 (80)
++|+|+.|.+..+++- .|.|.|..+|. ..||.|.++.. ++-+.....+.+++.-|..+..++
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f~--NG~~~~s~eVtls~~DI~~L~ii~ 68 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFH--NGVKCLVPEVTFRAGDITELKILE 68 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEEE--TTEECSSSEEEEEGGGCSEEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhhh--CCCCCCCcEEEEEecChhheEEEe
Confidence 4799999999999998 99999999995 46899999953 333444567999999887776654
No 33
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.05 E-value=0.00085 Score=39.21 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=40.5
Q ss_pred hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecCCc
Q 034890 10 LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76 (80)
Q Consensus 10 L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~~ 76 (80)
|..+. ..+|.|.|.||..++|.+.+||+|+=++ ++ +. ..+|--..|.+|.+..++
T Consensus 13 Ln~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~~-----g~------~qLIYKhAISTI~P~~~v 69 (79)
T 3sb2_A 13 LNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-RN-----TV------TQMVYKHAISTVVPARAV 69 (79)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-ES-----SS------EEEEEGGGEEEEEESSCC
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-EC-----Cc------eEEEEeeeEEEEeecCce
Confidence 44443 5679999999999999999999998654 32 22 346777778888776554
No 34
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.90 E-value=0.0074 Score=37.91 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=47.0
Q ss_pred CchhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEE--cceEEecCceeeeecEEEEcCCcEEEEEecCCcc
Q 034890 8 PDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI--DNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVS 77 (80)
Q Consensus 8 ~~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL--~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~~~ 77 (80)
....+|+|..|.|+|+||..++|++..+|. -+|.| ++|.. +..-|+.+.|.-+...+..+
T Consensus 5 ~~~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~---------s~~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 5 MSVADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLAND---------STKSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp CCHHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTT---------EEEEEEGGGEEEEEECCSCC
T ss_pred ccHHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEecccccc---------ccceeecccccceeeeeccc
Confidence 457899999999999999999999999983 46666 88832 22278888888777766543
No 35
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.85 E-value=0.00076 Score=41.30 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=37.4
Q ss_pred hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEecCC
Q 034890 10 LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 10 L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~d~ 75 (80)
|+.+. ..+|.|.|.||..++|++.+||+|+=++- +. ...+|--..|.+|.+..+
T Consensus 14 Ln~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~-~~-----------kqqLIYKHAISTI~p~~~ 69 (104)
T 2y90_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK-NT-----------VSQMVYKHAISTVVPSRP 69 (104)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE-SS-----------SEEEEEGGGEEEEEESSC
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE-CC-----------ceEEEEeeeeEEEeeccc
Confidence 55554 45899999999999999999999985554 21 134455555555555443
No 36
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=96.77 E-value=0.011 Score=33.27 Aligned_cols=60 Identities=23% Similarity=0.438 Sum_probs=45.1
Q ss_pred hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEec
Q 034890 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEAL 73 (80)
Q Consensus 10 L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~~ 73 (80)
|.++-|++|-|.......|+|+|.-||... +.|+|+....|++- ..++++=+.|-.|-..
T Consensus 11 L~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GNk~---k~liv~idDinWimL~ 70 (71)
T 1ycy_A 11 LKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGNRG---KQMLIGLEDINWIMLL 70 (71)
T ss_dssp HHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEEEE---EEEEEEGGGEEEEEEC
T ss_pred HHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhcccc---ceeEEEeccceEEEee
Confidence 788999999999999999999999999874 78999998776542 3567777777766553
No 37
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.74 E-value=0.01 Score=34.99 Aligned_cols=59 Identities=10% Similarity=0.186 Sum_probs=48.1
Q ss_pred hhhhcCCEEEEEEcCCeEEEEEEEEEC-CCCceEEcceEEecCceeeeecEEEEcCCcEEEEEe
Q 034890 10 LKKYMDKKLQIKLNANRMIVGTLRGFD-QFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEA 72 (80)
Q Consensus 10 L~~~~~k~V~V~l~~g~~~~G~L~~~D-~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~ 72 (80)
|..+.|++|.+.+.++..+.|++.++| ...|+..++-.--.| -++...+|++.|.+++.
T Consensus 24 l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~TPiG----v~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 24 LLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTPIG----VQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECCTTC----CEEEEEEEGGGEEEEEE
T ss_pred HHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCCCcc----cchhhhhhcCCEEEEEe
Confidence 456679999999999999999999999 677777766533223 36789999999999875
No 38
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.68 E-value=0.0061 Score=34.86 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.8
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCCCceEEc
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVID 44 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~ 44 (80)
-+.+|+|.|.||..++|.+.+||+|+=+.-.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~ 54 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKV 54 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEe
Confidence 4678999999999999999999999865543
No 39
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=95.52 E-value=0.14 Score=30.89 Aligned_cols=64 Identities=11% Similarity=0.291 Sum_probs=51.7
Q ss_pred hhhcCCEEEEEEcCCe-EEEEEEEEECCCCceEEcceEEecCce--eeeecEEEEcCCcEEEEEecCCcc
Q 034890 11 KKYMDKKLQIKLNANR-MIVGTLRGFDQFMNLVIDNTVEVNGNE--KNDIGMVVIRGNSVVTVEALEPVS 77 (80)
Q Consensus 11 ~~~~~k~V~V~l~~g~-~~~G~L~~~D~~~NlvL~~~~e~~~~~--~~~~g~v~IrG~~I~~I~~~d~~~ 77 (80)
++|+|+-|.|...+.- .|.|.+..+|+ .++.|+++.. ++- +.....|.++...|..+..++..+
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr--NGiplk~~~~EVtLsa~DI~~L~IIe~~~ 74 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR--NGVPLRKQNAEVVLKCTDIRSIDLIEPAK 74 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE--TTEECSCSSSCEEEETTTEEEEEEEECCC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh--cCcCcCCCCceEEEEecchhheeeecccc
Confidence 5899999999999985 99999999995 4599999876 332 334678999999999888876543
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.40 E-value=0.11 Score=29.70 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=39.3
Q ss_pred hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEe
Q 034890 10 LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEA 72 (80)
Q Consensus 10 L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~ 72 (80)
|+.++ ..+|.|+|.+|..++|++.-+|++.=.+-.+ .+ ..++|.-..|++|.+
T Consensus 16 lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~-~~---------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 16 LQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADE-NS---------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp HHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC-------------CEEEEEGGGEEEEEE
T ss_pred HHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcC-CC---------CeEEEEeeeeEEEEe
Confidence 67776 4589999999999999999999987544433 21 146777777888765
No 41
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.25 E-value=0.093 Score=29.81 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=39.2
Q ss_pred hhhhc--CCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcCCcEEEEEe
Q 034890 10 LKKYM--DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRGNSVVTVEA 72 (80)
Q Consensus 10 L~~~~--~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG~~I~~I~~ 72 (80)
|+.++ ..+|.|.|.+|..++|++.-+|++.=++-.+. + -..+|.-..|++|.+
T Consensus 14 lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~~----~------~~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 14 VQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVDDS----E------RSTIVRLAAIAYITP 68 (70)
T ss_dssp HHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEECTT----C------CEEEEEGGGEEEEEE
T ss_pred HHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEcCC----C------CeEEEEeeeeEEEee
Confidence 67776 57899999999999999999999875554321 1 135666677777754
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=93.70 E-value=0.12 Score=35.67 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=30.7
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEECCCCceEEcce
Q 034890 13 YMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNT 46 (80)
Q Consensus 13 ~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~ 46 (80)
.+|++|+|...+|..++|+..++|....|+++..
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 3699999998889999999999999999999754
No 43
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=93.38 E-value=0.052 Score=35.08 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=26.9
Q ss_pred hhhhcCCEEEEEE----cCCeEEEEEEEEECCCCceEE
Q 034890 10 LKKYMDKKLQIKL----NANRMIVGTLRGFDQFMNLVI 43 (80)
Q Consensus 10 L~~~~~k~V~V~l----~~g~~~~G~L~~~D~~~NlvL 43 (80)
+.+++|+.|.|++ .+.+.++|+|.++|.. .+.|
T Consensus 99 f~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 99 VAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp HHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred HHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 6677999999999 4459999999999965 3444
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=91.01 E-value=0.17 Score=33.94 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=32.6
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRG 64 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG 64 (80)
+|++|++...++ ++|+..++|....|+++.... ...-..|.+.+|+
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G---~~~~~~Gev~~r~ 232 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEG---IKEILSGEFSLRR 232 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEETTE---EEEECSCCEEEC-
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEECCC---eEEEEEeEEEEec
Confidence 699999976654 999999999999999975321 1122345666664
No 45
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=89.16 E-value=0.88 Score=31.67 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=34.0
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEECCCCceEEcceEEecCceeeeecEEEEcC
Q 034890 13 YMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNGNEKNDIGMVVIRG 64 (80)
Q Consensus 13 ~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~~~~~~~g~v~IrG 64 (80)
++|++|+|... +..++|+..++|....|+++... +...-..|.+.+|+
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~~---g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQDG---IIKPWMGGEISLRS 318 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEETT---EEEEESSCEEEEC-
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEECC---CEEEEEeeeEEEec
Confidence 36999999876 45899999999999999997532 11122345666654
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=87.33 E-value=1 Score=30.22 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.5
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEECCCCceEEcc
Q 034890 13 YMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDN 45 (80)
Q Consensus 13 ~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~ 45 (80)
.+|++|++...++..++|+..++|....|+ +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 379999999988877999999999999998 64
No 47
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=84.51 E-value=0.91 Score=30.47 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=24.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCCCceEEcc
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVIDN 45 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~ 45 (80)
+|++|++...++ ++|+..++|....|+++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 699999988776 999999999999999975
No 48
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=82.14 E-value=1.8 Score=30.26 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=27.1
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEECCCCceEEcc
Q 034890 13 YMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDN 45 (80)
Q Consensus 13 ~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~ 45 (80)
++|++|+|... +..++|+..++|....|++++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 36899999865 567999999999999999974
No 49
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=82.01 E-value=2.4 Score=28.13 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=25.1
Q ss_pred hcCCEEEEEEcCCeEEEEEEEEECCCCceEEcce
Q 034890 13 YMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNT 46 (80)
Q Consensus 13 ~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~ 46 (80)
.+|++|+| +| ++|+..++|....|+++..
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 36899999 45 9999999999999999753
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=81.12 E-value=1.9 Score=25.61 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=16.4
Q ss_pred CCEEEEEEcCCeEEEEEE
Q 034890 15 DKKLQIKLNANRMIVGTL 32 (80)
Q Consensus 15 ~k~V~V~l~~g~~~~G~L 32 (80)
..+|+++|.||+.+.|++
T Consensus 28 q~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTV 45 (101)
T ss_dssp TCEEEEEETTSCEEEEEE
T ss_pred eeEEEEEEcCCCeEeeee
Confidence 358999999999999997
No 51
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=77.80 E-value=6.5 Score=22.05 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=25.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCCCceEE-cceEE
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQFMNLVI-DNTVE 48 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL-~~~~e 48 (80)
+|..|.++-+||+.|-|+++...+..=+|. +|-.+
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~ 53 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSE 53 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCE
T ss_pred cCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcc
Confidence 689999999999999999976664443332 44433
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=72.42 E-value=6.4 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCCC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQFM 39 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~~ 39 (80)
.|..|.+.-+||+.|-|++..+|..-
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAR 31 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCC
Confidence 47889999999999999999998653
No 53
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=69.84 E-value=7.9 Score=21.50 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=23.0
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQF 38 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~ 38 (80)
.|..|+..-.||+.|.|++..+++.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 6889999999999999999999974
No 54
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=68.03 E-value=19 Score=25.86 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=28.5
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++.++|...+|-|=...
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~ 119 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQIQ 119 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 57999999999999999999999998877664
No 55
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=59.43 E-value=13 Score=22.77 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=21.0
Q ss_pred cCCEEEEEEcCCeEEEEEEEEEC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFD 36 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D 36 (80)
+|.+|..+-+||+.|.|++.+..
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEe
Confidence 68999999999999999998865
No 56
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=58.82 E-value=16 Score=26.46 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=28.1
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.||+.+.+++.++|...+|-|-...
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 36899999999999999999999998876654
No 57
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=55.63 E-value=3.5 Score=23.88 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=17.6
Q ss_pred hcCCEEEEEEcCCeEEEEEEE
Q 034890 13 YMDKKLQIKLNANRMIVGTLR 33 (80)
Q Consensus 13 ~~~k~V~V~l~~g~~~~G~L~ 33 (80)
..+.++.|+++||..++|+..
T Consensus 23 ~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 23 QHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp TTTTCEEEECTTTCCEEESSC
T ss_pred HcCCeEEEEEeCCCEEEEEEE
Confidence 358899999999999888543
No 58
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=50.87 E-value=22 Score=24.70 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=27.3
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcce
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNT 46 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~ 46 (80)
..+.|.+.+|+.+.+++.++|....|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4688999999999999999999988877655
No 59
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=49.28 E-value=8.6 Score=22.04 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=22.9
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQF 38 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~ 38 (80)
.|.-|.++-+||+.|-|++..+|..
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEeccC
Confidence 6889999999999999999998864
No 60
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=46.68 E-value=25 Score=23.30 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.7
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcce
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNT 46 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~ 46 (80)
.++.|.+.+|+.+.+++.+.|....|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4689999999999999999999888877655
No 61
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=46.27 E-value=22 Score=25.77 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=28.0
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++.++|...+|-|-...
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~ 133 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKID 133 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEECC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEEc
Confidence 46899999999999999999999998776653
No 62
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=45.11 E-value=37 Score=21.97 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=27.4
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++..+|....|-|=...
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l~ 108 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKIN 108 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 57899999999999999999998888776543
No 63
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=45.06 E-value=1.1 Score=26.89 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.4
Q ss_pred EEEEEEECCCCceEEcceEE
Q 034890 29 VGTLRGFDQFMNLVIDNTVE 48 (80)
Q Consensus 29 ~G~L~~~D~~~NlvL~~~~e 48 (80)
-|++.+||+-.|+.|++|..
T Consensus 34 ~~~~~~FDk~TNl~LEeA~~ 53 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAWK 53 (99)
T ss_dssp SSCEEECCTTHHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHHH
Confidence 46799999999999999863
No 64
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=44.88 E-value=16 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.4
Q ss_pred chhhhcCCEEEEEEcCCe----EEEEEEEEE
Q 034890 9 DLKKYMDKKLQIKLNANR----MIVGTLRGF 35 (80)
Q Consensus 9 ~L~~~~~k~V~V~l~~g~----~~~G~L~~~ 35 (80)
.|..++|++|.++...|| +-+|+|...
T Consensus 19 ~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 19 EIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 378889999999999996 457998764
No 65
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=44.17 E-value=40 Score=21.79 Aligned_cols=33 Identities=6% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 15 DKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 15 ~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
...+.|.+.+|+.+.+++..+|....|-|-...
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 357999999999999999999998888776554
No 66
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.38 E-value=41 Score=18.63 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=22.6
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQF 38 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~ 38 (80)
.|..|...-+||..|-|++..+|..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5788999999999999999999954
No 67
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=42.36 E-value=36 Score=23.09 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=27.6
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++.++|...+|-|-...
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 95 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQ 95 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEEC
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEEC
Confidence 47999999999999999999998888776554
No 68
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=42.05 E-value=38 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.5
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++.++|...++-|-...
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~~ 97 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLIIK 97 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEEe
Confidence 46899999999999999999999898776554
No 69
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=41.98 E-value=40 Score=22.98 Aligned_cols=32 Identities=6% Similarity=0.198 Sum_probs=27.5
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++.++|....|-|=...
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl~ 102 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRIQ 102 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEEc
Confidence 47899999999999999999998888776554
No 70
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=41.11 E-value=52 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=24.3
Q ss_pred CchhhhcCCEEEEEEcC----------C-eEEEEEEEEECC
Q 034890 8 PDLKKYMDKKLQIKLNA----------N-RMIVGTLRGFDQ 37 (80)
Q Consensus 8 ~~L~~~~~k~V~V~l~~----------g-~~~~G~L~~~D~ 37 (80)
++|..++|+++.|.+.. . +.+.|.+..+..
T Consensus 56 l~l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~~ 96 (491)
T 2p5z_X 56 IAPESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKH 96 (491)
T ss_dssp CCGGGTTTCEEEEEECC----------CCEEEEEEEEEEEE
T ss_pred CCHHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEEE
Confidence 56888999999999942 2 889999988764
No 71
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=39.78 E-value=28 Score=23.86 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.3
Q ss_pred CeEEEEEEEEECCCCceEEc
Q 034890 25 NRMIVGTLRGFDQFMNLVID 44 (80)
Q Consensus 25 g~~~~G~L~~~D~~~NlvL~ 44 (80)
+..++|.+..+|.|.|++..
T Consensus 171 ~~~i~g~V~~iD~FGN~iTn 190 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILN 190 (259)
T ss_dssp TTEEEEEEEEECTTCCEEES
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45689999999999999864
No 72
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=39.71 E-value=22 Score=23.54 Aligned_cols=22 Identities=9% Similarity=0.447 Sum_probs=18.8
Q ss_pred hcCCEEEEEEcCCeEEEEEEEE
Q 034890 13 YMDKKLQIKLNANRMIVGTLRG 34 (80)
Q Consensus 13 ~~~k~V~V~l~~g~~~~G~L~~ 34 (80)
.+|..|+|.+..|+.++|+..+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 4688999999999999998765
No 73
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=39.64 E-value=20 Score=19.74 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.0
Q ss_pred CEEEEEEcCCeEEEEEEEEEC
Q 034890 16 KKLQIKLNANRMIVGTLRGFD 36 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D 36 (80)
.+|+|.+.||..+.+++..-|
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~ 28 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASN 28 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 478999999999999998755
No 74
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=38.39 E-value=45 Score=20.45 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=20.2
Q ss_pred cCCEEEEEEcCCeEEEEEEEEE
Q 034890 14 MDKKLQIKLNANRMIVGTLRGF 35 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~ 35 (80)
.|..|.|.-.||..|.|++.+.
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~ 88 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGS 88 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeee
Confidence 5789999999999999999986
No 75
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=38.11 E-value=30 Score=23.69 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.2
Q ss_pred CeEEEEEEEEECCCCceEEc
Q 034890 25 NRMIVGTLRGFDQFMNLVID 44 (80)
Q Consensus 25 g~~~~G~L~~~D~~~NlvL~ 44 (80)
+..++|.+..+|.|.|++..
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45689999999999999763
No 76
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=37.26 E-value=27 Score=24.53 Aligned_cols=24 Identities=4% Similarity=-0.044 Sum_probs=19.8
Q ss_pred hhhcCCEEEEEEcCCeEEEEEEEE
Q 034890 11 KKYMDKKLQIKLNANRMIVGTLRG 34 (80)
Q Consensus 11 ~~~~~k~V~V~l~~g~~~~G~L~~ 34 (80)
..+.+++|+|..++|..+.|++-.
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCCEEEEEEeC
Confidence 456789999999999999998854
No 77
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=34.98 E-value=59 Score=18.05 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=26.4
Q ss_pred chhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcc
Q 034890 9 DLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDN 45 (80)
Q Consensus 9 ~L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~ 45 (80)
.|.+..+.++.+...+-..++|.+..++..+=+-+.+
T Consensus 43 ~Ld~~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~ 79 (84)
T 1o9y_A 43 EVTGISPGHATLCHGEQVVAEGELVDVEGRLGLQITR 79 (84)
T ss_dssp EECSSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred EeCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEE
Confidence 3555567788888887788888888888766555543
No 78
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=34.78 E-value=71 Score=21.72 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=25.3
Q ss_pred EECCCCceEEcceEEecCce--eeeecEEEEcCCcEEEEEe
Q 034890 34 GFDQFMNLVIDNTVEVNGNE--KNDIGMVVIRGNSVVTVEA 72 (80)
Q Consensus 34 ~~D~~~NlvL~~~~e~~~~~--~~~~g~v~IrG~~I~~I~~ 72 (80)
++|..|.++++|+.-..+.. ...-+.+.|+|..|+.|..
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~ 42 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKK 42 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeC
Confidence 56777888898887665322 2344689999999999975
No 79
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=34.69 E-value=75 Score=21.59 Aligned_cols=32 Identities=6% Similarity=0.232 Sum_probs=27.6
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++..+|....|-|=...
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l~ 101 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKID 101 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEEC
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEEc
Confidence 57999999999999999999998888776544
No 80
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.53 E-value=40 Score=18.40 Aligned_cols=25 Identities=4% Similarity=0.097 Sum_probs=22.4
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQF 38 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~ 38 (80)
.|..|..+-+||+.|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5788999999999999999999955
No 81
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=33.08 E-value=56 Score=22.47 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=27.5
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++.++|....|-|=...
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl~ 108 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRID 108 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEECC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEEc
Confidence 57899999999999999999998888776543
No 82
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=32.40 E-value=80 Score=18.66 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=39.9
Q ss_pred EEEEcCCeEEEEEEEEECCCCceEEcceEEecC--c----------ee----eeecEEEEcCCcEEEEEecCC
Q 034890 19 QIKLNANRMIVGTLRGFDQFMNLVIDNTVEVNG--N----------EK----NDIGMVVIRGNSVVTVEALEP 75 (80)
Q Consensus 19 ~V~l~~g~~~~G~L~~~D~~~NlvL~~~~e~~~--~----------~~----~~~g~v~IrG~~I~~I~~~d~ 75 (80)
.++|++|.++.|.+.--|.. +.++|+.+.+. . .+ ..-..++||.+.|+++..+.+
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 47899999999999976653 88888876531 1 01 123688999999999987643
No 83
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=31.73 E-value=56 Score=22.61 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=25.9
Q ss_pred CCCchhhhcCCEEEEEEcCCeEEEEEEEEE
Q 034890 6 QPPDLKKYMDKKLQIKLNANRMIVGTLRGF 35 (80)
Q Consensus 6 ~p~~L~~~~~k~V~V~l~~g~~~~G~L~~~ 35 (80)
.|..|.+++=+++.|.++||.+..|.+=+-
T Consensus 180 ~P~~l~DlvWrpa~l~l~dG~~~~g~iPaR 209 (273)
T 1zbp_A 180 SATSLLESVWRPVEFDIDGLGEGEGHMPMT 209 (273)
T ss_dssp CCCSSGGGTEEEEEEEETTTEEEEEEEECB
T ss_pred CCCcHHHhhccccEEEEecCCeeEEEeecc
Confidence 466699999999999999999999988653
No 84
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=31.46 E-value=78 Score=18.27 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=28.3
Q ss_pred hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEE
Q 034890 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVI 43 (80)
Q Consensus 10 L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL 43 (80)
-+-|+||++.-..+.|+.+.|++..--....+|.
T Consensus 35 a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvVr 68 (87)
T 3j21_c 35 ASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVR 68 (87)
T ss_dssp HGGGTTCEEEECCSSSCCEEEEEEEECCSSSCEE
T ss_pred HHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeEE
Confidence 4567999999999999999999998777766664
No 85
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=31.04 E-value=51 Score=24.78 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=26.7
Q ss_pred CEEEEEEc-CCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLN-ANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~-~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..|.|.+. ||+.|.+++.++|....|-|=...
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLkv~ 129 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVE 129 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEEEC
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEEEe
Confidence 46888885 899999999999999988776543
No 86
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=29.68 E-value=1e+02 Score=19.05 Aligned_cols=29 Identities=7% Similarity=0.065 Sum_probs=23.3
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcce
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNT 46 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~ 46 (80)
..+.|.+ +|+.+.+++. +|....|-|=..
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv 71 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAFITC 71 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEEEEC
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEEEEe
Confidence 4678888 9999999999 898777766544
No 87
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=29.06 E-value=79 Score=18.12 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=26.3
Q ss_pred hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcce
Q 034890 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNT 46 (80)
Q Consensus 10 L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~ 46 (80)
|....+.+|.|...+-..++|.+..+|+.+=+-+.+.
T Consensus 48 Ld~~~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~i 84 (96)
T 3uep_A 48 LTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 84 (96)
T ss_dssp EEEESSCEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 4455567788877777788888888887666666553
No 88
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=27.66 E-value=54 Score=19.10 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=18.8
Q ss_pred CCEEEEEEcCCeEEEEEEEEEC
Q 034890 15 DKKLQIKLNANRMIVGTLRGFD 36 (80)
Q Consensus 15 ~k~V~V~l~~g~~~~G~L~~~D 36 (80)
..+|+|.|-||..+.+++..-|
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~ 34 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDA 34 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTS
T ss_pred cEEEEEECCCCCEEEEEeCCCC
Confidence 4689999999999999997643
No 89
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=27.53 E-value=49 Score=23.01 Aligned_cols=22 Identities=9% Similarity=0.463 Sum_probs=17.4
Q ss_pred hcCCEEEEE-EcCCeEEEEEEEE
Q 034890 13 YMDKKLQIK-LNANRMIVGTLRG 34 (80)
Q Consensus 13 ~~~k~V~V~-l~~g~~~~G~L~~ 34 (80)
..|..|+|. +..|+.++|+..+
T Consensus 238 a~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 238 YLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp CTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEEec
Confidence 478999999 9999999999864
No 90
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=26.90 E-value=95 Score=18.20 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=29.1
Q ss_pred hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEc
Q 034890 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVID 44 (80)
Q Consensus 10 L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~ 44 (80)
-+-|+||+|.-.-+.++.+.|++.---.....|-.
T Consensus 35 a~fYlGKrvayvyka~rviwGKVtR~HGnsGvVrA 69 (95)
T 1sqr_A 35 ASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRA 69 (95)
T ss_dssp HHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEEE
T ss_pred HHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEEEE
Confidence 45679999999999999999999988777666654
No 91
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=26.84 E-value=41 Score=20.18 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=18.5
Q ss_pred CEEEEEEcCCeEEEEEEEEEC
Q 034890 16 KKLQIKLNANRMIVGTLRGFD 36 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D 36 (80)
.+|+|.|-||..+.+++..-|
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~ 64 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQA 64 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 579999999999999998755
No 92
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=26.18 E-value=52 Score=19.10 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.9
Q ss_pred CCEEEEEEcCCeEEEEEEEEEC
Q 034890 15 DKKLQIKLNANRMIVGTLRGFD 36 (80)
Q Consensus 15 ~k~V~V~l~~g~~~~G~L~~~D 36 (80)
..+|.|.|-||..+..++..-|
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~ 44 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSW 44 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSS
T ss_pred cEEEEEECCCCCEEEEEeCCCC
Confidence 3589999999999999998765
No 93
>2cw5_A Bacterial fluorinating enzyme homolog; alpha and beta protein (A/B), beta barrel, structural genomics, NPPSFA; 1.94A {Thermus thermophilus}
Probab=25.83 E-value=41 Score=23.00 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.6
Q ss_pred EEEEEEEECCCCceEEc
Q 034890 28 IVGTLRGFDQFMNLVID 44 (80)
Q Consensus 28 ~~G~L~~~D~~~NlvL~ 44 (80)
++|.+..+|.|.|++..
T Consensus 174 i~g~V~~iD~FGN~iTn 190 (255)
T 2cw5_A 174 PEGEVLTFDRFGNAITT 190 (255)
T ss_dssp SEEEEEEECTTCCEEES
T ss_pred cEEEEEEEcccCCceec
Confidence 89999999999999864
No 94
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=25.29 E-value=1.1e+02 Score=18.13 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=21.4
Q ss_pred cCCeEEEEEE---EEECCCCceEEcceEEec
Q 034890 23 NANRMIVGTL---RGFDQFMNLVIDNTVEVN 50 (80)
Q Consensus 23 ~~g~~~~G~L---~~~D~~~NlvL~~~~e~~ 50 (80)
++...+.|.| .-+|+-+.++|+|+....
T Consensus 52 ksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 52 RNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 3456777866 456999999999998654
No 95
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=24.76 E-value=83 Score=16.41 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=25.1
Q ss_pred CCchhhhcCCEEEEEE-cCCeEEEEEEEEECCC
Q 034890 7 PPDLKKYMDKKLQIKL-NANRMIVGTLRGFDQF 38 (80)
Q Consensus 7 p~~L~~~~~k~V~V~l-~~g~~~~G~L~~~D~~ 38 (80)
|+...=-.|..+.... .||.-|++++.+++..
T Consensus 4 ~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~ 36 (64)
T 4a4f_A 4 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEE 36 (64)
T ss_dssp CCSSCCCTTCEEEEECTTTSSEEEEEEEEEETT
T ss_pred CcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCC
Confidence 4444445788888888 5999999999999864
No 96
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=24.15 E-value=85 Score=20.97 Aligned_cols=29 Identities=10% Similarity=0.338 Sum_probs=23.8
Q ss_pred hhhcCCEEEEEEcCCeEEEEEEEEECCCC
Q 034890 11 KKYMDKKLQIKLNANRMIVGTLRGFDQFM 39 (80)
Q Consensus 11 ~~~~~k~V~V~l~~g~~~~G~L~~~D~~~ 39 (80)
.+++|+.+.-.+.+|..+.|+++-...|+
T Consensus 21 ~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 21 RAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 36799999999999999999998766554
No 97
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=24.11 E-value=33 Score=19.36 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=12.0
Q ss_pred CCEEEEEEcCCeEEEEEEEE
Q 034890 15 DKKLQIKLNANRMIVGTLRG 34 (80)
Q Consensus 15 ~k~V~V~l~~g~~~~G~L~~ 34 (80)
+-..+|.+.||.++.+.+.|
T Consensus 26 n~~f~V~l~nG~~~~c~i~G 45 (79)
T 3i4o_A 26 NAMFRIELENGHKVLAHISG 45 (79)
T ss_dssp TTEEEEEETTSCEEEEEECH
T ss_pred CCEEEEEeCCCCEEEEEeCc
Confidence 55566666666666555544
No 98
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=23.33 E-value=36 Score=19.77 Aligned_cols=22 Identities=18% Similarity=0.581 Sum_probs=16.5
Q ss_pred CCEEEEEEcCC---eEEEEEEEEEC
Q 034890 15 DKKLQIKLNAN---RMIVGTLRGFD 36 (80)
Q Consensus 15 ~k~V~V~l~~g---~~~~G~L~~~D 36 (80)
++.|.|.+.-| ..++|+|.+.|
T Consensus 2 ~~~~~V~F~~G~~~a~v~G~I~g~~ 26 (111)
T 4g9s_B 2 GKNVNVEFRKGHSSAQYSGEIKGYD 26 (111)
T ss_dssp CCEEECCCCTTCSEEEEEEEEETTC
T ss_pred CcceEEEECCCCCCeEEEEEEeCCC
Confidence 46777777655 68889998876
No 99
>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102}
Probab=23.32 E-value=66 Score=19.37 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=13.5
Q ss_pred CEEEEEEcCCeEEEEE
Q 034890 16 KKLQIKLNANRMIVGT 31 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~ 31 (80)
.-++|++++|+++++|
T Consensus 56 ~v~ri~t~~G~~i~~T 71 (139)
T 2keq_A 56 EVFEYCLEDGSLIRAT 71 (139)
T ss_dssp EEEEEEETTCCEEEEE
T ss_pred eEEEEEECCCCEEEEe
Confidence 4588999999999877
No 100
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=23.01 E-value=1.5e+02 Score=18.66 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=23.7
Q ss_pred ceEEcceEEecC--ceeeeecEEEEcCCcEEEEEec
Q 034890 40 NLVIDNTVEVNG--NEKNDIGMVVIRGNSVVTVEAL 73 (80)
Q Consensus 40 NlvL~~~~e~~~--~~~~~~g~v~IrG~~I~~I~~~ 73 (80)
.++|+|+.-..+ .+...-+.+.|++..|+.|...
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~ 40 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDK 40 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESS
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCC
Confidence 467888876643 2334446799999999999753
No 101
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=21.01 E-value=37 Score=20.40 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=18.4
Q ss_pred CCEEEEEEcCCeEEEEEEEEEC
Q 034890 15 DKKLQIKLNANRMIVGTLRGFD 36 (80)
Q Consensus 15 ~k~V~V~l~~g~~~~G~L~~~D 36 (80)
..+|+|.|-||..+.+++..-|
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~ 73 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSH 73 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSC
T ss_pred cEEEEEECCCCCEEEEEeCCCC
Confidence 4689999999999999987543
No 102
>1rqp_A 5'-fluoro-5'-deoxyadenosine synthase; fluorinase, central 7 stranded beta sheets, anti-parallel BE sheets, transferase; HET: SAM; 1.80A {Streptomyces cattleya} SCOP: b.141.1.1 c.132.1.1 PDB: 1rqr_A* 2c2w_A* 2c4t_A* 2c4u_A 2c5b_A* 2c5h_A* 2cbx_A* 2cc2_A* 2v7v_A* 2v7x_A* 2v7w_A* 2v7t_A* 2v7u_A*
Probab=20.84 E-value=65 Score=22.61 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.2
Q ss_pred CeEEEEEEEEEC-CCCceEEc
Q 034890 25 NRMIVGTLRGFD-QFMNLVID 44 (80)
Q Consensus 25 g~~~~G~L~~~D-~~~NlvL~ 44 (80)
+..++|.+..+| .|.|++..
T Consensus 199 ~~~i~g~V~~iD~~FGNviTn 219 (299)
T 1rqp_A 199 GEALVGVVSAIDHPFGNVWTN 219 (299)
T ss_dssp TTEEEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEEECCCCCCeEec
Confidence 567899999999 99999763
No 103
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=20.53 E-value=1.2e+02 Score=16.52 Aligned_cols=25 Identities=4% Similarity=0.108 Sum_probs=21.7
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQF 38 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~ 38 (80)
+|.+|...-.|++.|.|++.+++..
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 5777877779999999999999975
No 104
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=20.51 E-value=1.2e+02 Score=17.23 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=23.8
Q ss_pred hhhhcCCEEEEEEcCCeEEEEEEEEECCCCceEEcc
Q 034890 10 LKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDN 45 (80)
Q Consensus 10 L~~~~~k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~ 45 (80)
|....+.+|.|...+-..++|.+...|..+=+-+.+
T Consensus 48 Ld~~~~~~v~v~v~g~~i~~G~~g~~~~~~aVrI~~ 83 (96)
T 1o6a_A 48 LDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITE 83 (96)
T ss_dssp EEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred eCCCCCCcEEEEECCEEEEEEEEEEECCEEEEEEEE
Confidence 444456677777766677777777777766555544
No 105
>3sz6_A Conserved domain protein; IG fold, hemophore, heme-binding protein; 1.80A {Bacillus anthracis} PDB: 3sik_A*
Probab=20.41 E-value=1.1e+02 Score=18.32 Aligned_cols=25 Identities=4% Similarity=0.344 Sum_probs=19.5
Q ss_pred CCCCCchhhhcCCEEEEEEcCCeEE
Q 034890 4 SGQPPDLKKYMDKKLQIKLNANRMI 28 (80)
Q Consensus 4 ~~~p~~L~~~~~k~V~V~l~~g~~~ 28 (80)
..+|.-...++.++-.|..+||..+
T Consensus 24 t~e~Sma~~Y~~~pa~v~vknGk~~ 48 (121)
T 3sz6_A 24 KDESSRMNRYFESPATLTVKNGKQY 48 (121)
T ss_dssp SSSBCGGGGGBCSSEEEEEETTEEE
T ss_pred CCccchhhhhccCCEEEEEECCEEE
Confidence 4456668899999999999998644
No 106
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=20.41 E-value=40 Score=22.11 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=26.5
Q ss_pred CEEEEEEcCCeEEEEEEEEECCCCceEEcceE
Q 034890 16 KKLQIKLNANRMIVGTLRGFDQFMNLVIDNTV 47 (80)
Q Consensus 16 k~V~V~l~~g~~~~G~L~~~D~~~NlvL~~~~ 47 (80)
..+.|.+.+|+.+.+++.++|....|-|-...
T Consensus 80 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 111 (239)
T 1l1j_A 80 DNITVTMLDGSKYDAEYIGGDEELDIAVIKIK 111 (239)
T ss_dssp SSCEEECTTSCEEEBCCCEEETTTTEEEEEBC
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEEc
Confidence 35788999999999999999988888765554
No 107
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=20.38 E-value=1.1e+02 Score=17.00 Aligned_cols=24 Identities=0% Similarity=-0.028 Sum_probs=20.5
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQ 37 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~ 37 (80)
.+..|.|++.++..+.|.+..|..
T Consensus 73 Pd~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 73 PQYTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp CSEEEEEEEETTEEEEEEEECCCT
T ss_pred CCEEEEEEEeCCEEEEEEcccccc
Confidence 366899999999999999988764
No 108
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.38 E-value=1.2e+02 Score=16.61 Aligned_cols=25 Identities=4% Similarity=0.118 Sum_probs=22.0
Q ss_pred cCCEEEEEEcCCeEEEEEEEEECCC
Q 034890 14 MDKKLQIKLNANRMIVGTLRGFDQF 38 (80)
Q Consensus 14 ~~k~V~V~l~~g~~~~G~L~~~D~~ 38 (80)
.|..+.-.-.||.-|.+++.+++..
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 5888888888999999999999864
No 109
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=20.33 E-value=53 Score=22.71 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=15.3
Q ss_pred CeEEEEEEEEEC-CCCceEEc
Q 034890 25 NRMIVGTLRGFD-QFMNLVID 44 (80)
Q Consensus 25 g~~~~G~L~~~D-~~~NlvL~ 44 (80)
+..++|.+..+| .|.|++..
T Consensus 172 ~~~i~g~V~~iD~~FGN~iTn 192 (283)
T 2q6k_A 172 EGGIRGEVVRIDRAFGNVWTN 192 (283)
T ss_dssp ---CEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEEECCCCCCEEec
Confidence 456899999999 99999763
Done!