BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034893
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2KIN1|DPM2_BOVIN Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos
          taurus GN=DPM2 PE=3 SV=3
          Length = 84

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query: 5  DRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFL 64
          D+VVG  L  +SL IFTYYT WVI+LPF+D+ H IH+YFLP+ YAI IP+ AG +LL F+
Sbjct: 6  DQVVGLGLVALSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAIAIPLAAGHLLLLFV 65

Query: 65 CIFIGFVILKSKK 77
           IFI +V+LK++ 
Sbjct: 66 GIFITYVMLKNQN 78


>sp|Q9Z1P1|DPM2_CRIGR Dolichol phosphate-mannose biosynthesis regulatory protein
          OS=Cricetulus griseus GN=DPM2 PE=3 SV=3
          Length = 84

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 63/79 (79%), Gaps = 2/79 (2%)

Query: 4  ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCF 63
           D+VVGF L  +SL IFTYYT WVI+LPF+D+ H IH+YFLP+ YA++IP+  G++LL F
Sbjct: 5  TDQVVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLIPLATGLLLLLF 64

Query: 64 LCIFIGFVILKSKK--KKA 80
          + +FI +V+LKS++  KKA
Sbjct: 65 VGLFITYVMLKSRRLTKKA 83


>sp|Q556K9|DPM2_DICDI Dolichol phosphate-mannose biosynthesis regulatory protein
          OS=Dictyostelium discoideum GN=dpm2-1 PE=3 SV=1
          Length = 79

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 55/79 (69%)

Query: 1  MELADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVL 60
          M  +D+ +GF++    + +F YYT WVII PF+ +DH+I QYFLP+EY IIIP+   VV 
Sbjct: 1  MGASDKFIGFVMVLFRIFVFGYYTTWVIITPFIVSDHWIQQYFLPREYGIIIPLVLLVVG 60

Query: 61 LCFLCIFIGFVILKSKKKK 79
          +  +  F+G V++KSKK K
Sbjct: 61 ITAIGTFLGLVMIKSKKNK 79


>sp|O94777|DPM2_HUMAN Dolichol phosphate-mannose biosynthesis regulatory protein
          OS=Homo sapiens GN=DPM2 PE=1 SV=3
          Length = 84

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 62/78 (79%), Gaps = 2/78 (2%)

Query: 5  DRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFL 64
          D+VVG  L  +SL IFTYYT WVI+LPF+D+ H IH+YFLP+ YA+ IP+ AG++LL F+
Sbjct: 6  DQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFV 65

Query: 65 CIFIGFVILKSKK--KKA 80
           +FI +V+LK+K+  KKA
Sbjct: 66 GLFISYVMLKTKRVTKKA 83


>sp|Q9Z324|DPM2_MOUSE Dolichol phosphate-mannose biosynthesis regulatory protein OS=Mus
          musculus GN=Dpm2 PE=2 SV=3
          Length = 84

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 63/78 (80%), Gaps = 2/78 (2%)

Query: 5  DRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFL 64
          D+ VGF L  +SL IFTYYT WVI+LPF+D+ H IH+YFLP+ YA+++P+ AG++LL F+
Sbjct: 6  DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFV 65

Query: 65 CIFIGFVILKSKK--KKA 80
           +FI +V+LKS+K  KKA
Sbjct: 66 GLFITYVMLKSQKITKKA 83


>sp|Q9Z325|DPM2_RAT Dolichol phosphate-mannose biosynthesis regulatory protein
          OS=Rattus norvegicus GN=Dpm2 PE=3 SV=3
          Length = 84

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 63/78 (80%), Gaps = 2/78 (2%)

Query: 5  DRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFL 64
          D+ VGF L  +SL IFTYYT WVI+LPF+D+ H IH+YFLP+ YA+++P+ AG++LL F+
Sbjct: 6  DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFV 65

Query: 65 CIFIGFVILKSKK--KKA 80
           +FI +V+LKS+K  KKA
Sbjct: 66 GLFITYVLLKSQKVTKKA 83


>sp|Q9USW6|DPM2_SCHPO Dolichol phosphate-mannose biosynthesis regulatory protein
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=dpm2 PE=3 SV=1
          Length = 72

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 46/70 (65%)

Query: 11 LLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGF 70
          ++ +IS + F YYT WV+I+PFVD  +   + FL +E+AI IPV   +  +C +  F+  
Sbjct: 1  MIVYISTAAFLYYTIWVLIMPFVDNMNISQKLFLDREWAITIPVAVMLFGICLIGTFVSL 60

Query: 71 VILKSKKKKA 80
          +++KS KKK+
Sbjct: 61 LMIKSSKKKS 70


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.340    0.154    0.489 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,426,040
Number of Sequences: 539616
Number of extensions: 935059
Number of successful extensions: 3397
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3389
Number of HSP's gapped (non-prelim): 14
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 55 (25.8 bits)