Query 034893
Match_columns 80
No_of_seqs 100 out of 129
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07297 DPM2: Dolichol phosph 100.0 8.5E-43 1.8E-47 224.6 8.9 78 3-80 1-78 (78)
2 KOG3488 Dolichol phosphate-man 100.0 1.1E-36 2.3E-41 196.0 7.2 80 1-80 1-80 (81)
3 PF08510 PIG-P: PIG-P; InterP 97.7 0.00019 4.1E-09 48.7 6.3 63 9-72 7-69 (126)
4 KOG2257 N-acetylglucosaminyltr 97.2 0.0011 2.4E-08 46.8 5.7 68 8-77 10-78 (135)
5 PF10510 PIG-S: Phosphatidylin 92.4 0.063 1.4E-06 43.5 1.3 48 32-79 469-517 (517)
6 PF15102 TMEM154: TMEM154 prot 81.3 0.79 1.7E-05 32.8 1.1 17 48-64 59-75 (146)
7 PF00032 Cytochrom_B_C: Cytoch 78.2 9 0.00019 24.6 5.3 31 4-41 28-58 (102)
8 PF01102 Glycophorin_A: Glycop 74.6 6.8 0.00015 27.0 4.2 38 39-79 58-95 (122)
9 PF15330 SIT: SHP2-interacting 73.2 5.5 0.00012 26.7 3.4 28 51-78 2-30 (107)
10 KOG2459 GPI transamidase compl 70.6 1.2 2.6E-05 37.6 -0.4 32 32-63 487-519 (536)
11 PF03379 CcmB: CcmB protein; 69.9 39 0.00085 24.4 7.8 32 48-79 125-156 (215)
12 PF12273 RCR: Chitin synthesis 69.1 4.4 9.5E-05 27.1 2.2 12 67-78 16-27 (130)
13 PF11821 DUF3341: Protein of u 63.4 44 0.00095 24.1 6.6 57 12-74 62-118 (173)
14 cd00290 cytochrome_b_C Cytochr 62.5 22 0.00049 24.4 4.8 28 4-38 79-106 (147)
15 PF11118 DUF2627: Protein of u 62.4 40 0.00087 21.9 5.8 67 5-79 2-69 (77)
16 PF07787 DUF1625: Protein of u 59.8 64 0.0014 23.6 7.0 31 5-35 186-217 (248)
17 PF06305 DUF1049: Protein of u 58.5 18 0.00038 21.1 3.2 21 52-72 18-38 (68)
18 PF08183 SpoV: Stage V sporula 54.5 7.7 0.00017 20.5 1.0 22 46-67 2-23 (26)
19 PF07811 TadE: TadE-like prote 53.3 34 0.00073 18.2 4.1 17 47-63 6-22 (43)
20 PF01578 Cytochrom_C_asm: Cyto 52.1 80 0.0017 22.1 6.4 44 30-73 54-97 (214)
21 CHL00058 petD cytochrome b6/f 51.5 36 0.00077 24.6 4.4 32 4-42 92-123 (160)
22 COG0628 yhhT Predicted permeas 49.6 60 0.0013 24.6 5.6 58 15-72 23-90 (355)
23 cd02432 Nodulin-21_like_1 Nodu 49.2 39 0.00084 24.9 4.4 49 15-72 139-189 (218)
24 PF13314 DUF4083: Domain of un 48.3 59 0.0013 20.1 4.4 17 63-79 22-38 (58)
25 PRK13476 cytochrome b6-f compl 47.5 50 0.0011 23.8 4.7 31 5-42 93-123 (160)
26 PF01299 Lamp: Lysosome-associ 45.3 24 0.00052 26.7 2.9 29 49-77 270-299 (306)
27 COG0711 AtpF F0F1-type ATP syn 44.6 37 0.0008 23.6 3.5 27 1-27 2-29 (161)
28 PLN02838 3-hydroxyacyl-CoA deh 44.0 27 0.0006 26.1 3.0 51 29-79 161-214 (221)
29 TIGR01156 cytb6/f_IV cytochrom 43.2 58 0.0012 23.5 4.4 31 4-41 92-122 (159)
30 PF14610 DUF4448: Protein of u 42.6 6.3 0.00014 27.8 -0.6 22 47-68 159-180 (189)
31 PF06699 PIG-F: GPI biosynthes 42.4 1.1E+02 0.0023 22.4 5.8 46 16-69 141-187 (190)
32 PRK01844 hypothetical protein; 42.2 45 0.00097 21.3 3.3 26 48-74 5-30 (72)
33 PF05568 ASFV_J13L: African sw 41.5 50 0.0011 24.3 3.9 16 64-79 43-58 (189)
34 cd02435 CCC1 CCC1. CCC1: This 41.1 1.2E+02 0.0027 22.6 6.1 51 14-72 155-207 (241)
35 PF06800 Sugar_transport: Suga 40.3 1.3E+02 0.0028 23.2 6.2 53 4-69 134-186 (269)
36 PF12072 DUF3552: Domain of un 40.2 22 0.00047 25.5 1.9 21 55-75 3-23 (201)
37 PF06686 SpoIIIAC: Stage III s 39.4 41 0.00089 19.5 2.7 22 57-78 4-25 (58)
38 COG3296 Uncharacterized protei 39.3 67 0.0014 23.0 4.2 33 45-77 16-49 (143)
39 PF02285 COX8: Cytochrome oxid 39.2 43 0.00093 19.5 2.7 25 1-28 10-34 (44)
40 PF15361 RIC3: Resistance to i 39.1 41 0.00089 23.7 3.1 27 48-79 82-108 (152)
41 PLN00082 photosystem II reacti 37.3 32 0.00068 21.8 2.1 36 2-37 28-63 (67)
42 PF10211 Ax_dynein_light: Axon 37.2 10 0.00022 27.3 -0.2 14 36-49 2-15 (189)
43 TIGR02205 septum_zipA cell div 36.6 25 0.00054 27.3 1.8 26 54-79 4-29 (284)
44 PRK08376 putative monovalent c 36.5 1.9E+02 0.0042 23.4 6.9 55 14-69 438-493 (521)
45 PRK04335 cell division protein 36.5 30 0.00064 27.4 2.2 25 54-78 6-30 (313)
46 PF05545 FixQ: Cbb3-type cytoc 36.4 81 0.0018 17.7 4.4 16 59-74 14-29 (49)
47 PRK01741 cell division protein 36.3 30 0.00065 27.7 2.2 26 54-79 5-30 (332)
48 cd02431 Ferritin_CCC1_C CCC1-r 36.2 98 0.0021 21.5 4.6 49 15-71 69-119 (149)
49 PF11874 DUF3394: Domain of un 36.1 21 0.00045 26.2 1.3 18 44-62 156-173 (183)
50 KOG3653 Transforming growth fa 35.6 67 0.0015 27.4 4.3 33 46-78 154-186 (534)
51 PRK12287 tqsA pheromone autoin 34.6 1.1E+02 0.0025 23.2 5.1 43 14-56 19-71 (344)
52 PRK15071 lipopolysaccharide AB 34.4 1.6E+02 0.0035 22.1 5.8 45 8-58 301-345 (356)
53 PRK07691 putative monovalent c 33.7 2.5E+02 0.0055 22.6 7.3 55 14-68 415-469 (496)
54 MTH00151 ND5 NADH dehydrogenas 33.6 2.8E+02 0.0061 23.1 8.0 61 9-70 374-436 (565)
55 COG0795 Predicted permeases [G 33.1 1.8E+02 0.0038 22.0 5.9 43 9-57 308-350 (364)
56 cd02433 Nodulin-21_like_2 Nodu 33.0 1E+02 0.0022 23.0 4.5 49 15-71 153-203 (234)
57 PF02405 Permease: Permease; 32.8 45 0.00098 24.3 2.6 37 37-73 97-133 (215)
58 PRK14741 spoVM stage V sporula 32.7 17 0.00037 19.2 0.2 22 46-67 2-23 (26)
59 PRK05886 yajC preprotein trans 31.8 35 0.00076 23.1 1.7 11 69-79 18-28 (109)
60 PF14150 YesK: YesK-like prote 31.7 1.5E+02 0.0032 19.2 4.6 23 39-61 19-41 (81)
61 PRK10862 SoxR reducing system 31.3 83 0.0018 21.9 3.6 14 62-75 110-123 (154)
62 COG5605 Predicted small integr 30.9 65 0.0014 22.1 2.9 43 23-65 47-97 (115)
63 PRK12644 putative monovalent c 29.9 3.5E+02 0.0076 24.4 7.9 55 14-69 412-471 (965)
64 PRK12663 putative monovalent c 28.6 3.1E+02 0.0068 22.0 7.5 57 12-68 410-466 (497)
65 COG3263 NhaP-type Na+/H+ and K 28.1 65 0.0014 27.6 3.0 38 43-80 290-331 (574)
66 MTH00207 ND5 NADH dehydrogenas 27.9 3.6E+02 0.0078 22.5 8.0 58 11-69 379-438 (572)
67 PF11857 DUF3377: Domain of un 27.9 35 0.00077 21.9 1.2 21 48-68 32-52 (74)
68 PF14965 BRI3BP: Negative regu 27.8 2.5E+02 0.0055 20.7 6.0 37 13-50 37-75 (177)
69 PRK05585 yajC preprotein trans 27.3 43 0.00092 22.3 1.5 12 68-79 31-42 (106)
70 PRK00523 hypothetical protein; 27.1 1.1E+02 0.0024 19.5 3.4 26 48-74 6-31 (72)
71 PRK06525 hydrogenase 4 subunit 26.9 3.1E+02 0.0067 22.1 6.6 49 17-65 423-471 (479)
72 PF09716 ETRAMP: Malarial earl 26.9 1.4E+02 0.0029 18.9 3.8 30 49-79 55-84 (84)
73 KOG3144 Ethanolamine-P-transfe 26.7 1.5E+02 0.0033 22.3 4.4 45 17-69 145-190 (196)
74 PRK11633 cell division protein 26.4 18 0.00039 27.1 -0.4 21 4-33 6-26 (226)
75 TIGR01960 ndhF3_CO2 NAD(P)H de 26.1 3.6E+02 0.0078 22.8 7.0 55 11-65 417-471 (606)
76 TIGR00739 yajC preprotein tran 25.9 38 0.00082 21.5 1.1 14 66-79 14-27 (84)
77 TIGR02872 spore_ytvI sporulati 25.3 2.2E+02 0.0047 20.7 5.1 33 38-70 42-75 (341)
78 PRK06473 NAD(P)H-quinone oxido 24.7 3.8E+02 0.0082 21.7 7.4 58 12-69 411-468 (500)
79 PF06210 DUF1003: Protein of u 24.6 85 0.0018 21.0 2.6 26 53-78 34-59 (108)
80 COG4961 TadG Flp pilus assembl 24.5 86 0.0019 22.0 2.7 17 47-63 26-42 (185)
81 PF07123 PsbW: Photosystem II 24.5 89 0.0019 22.3 2.8 30 2-31 100-129 (138)
82 cd01324 cbb3_Oxidase_CcoQ Cyto 24.2 1.3E+02 0.0028 17.3 3.0 14 62-75 18-31 (48)
83 PF06295 DUF1043: Protein of u 23.7 73 0.0016 21.5 2.2 17 61-77 9-25 (128)
84 TIGR03794 NHPM_micro_HlyD NHPM 23.5 90 0.0019 24.3 2.9 27 35-62 8-34 (421)
85 PRK13279 arnT 4-amino-4-deoxy- 23.2 1.8E+02 0.0038 24.5 4.7 38 39-76 73-110 (552)
86 PRK11677 hypothetical protein; 22.9 75 0.0016 22.1 2.1 18 56-73 8-25 (134)
87 PLN00077 photosystem II reacti 22.8 79 0.0017 22.3 2.2 29 2-30 89-117 (128)
88 TIGR02595 PEP_exosort PEP-CTER 22.7 1.2E+02 0.0026 15.3 2.5 10 69-78 15-24 (26)
89 PF14752 RBP_receptor: Retinol 22.4 4.9E+02 0.011 22.4 7.2 59 7-69 388-446 (617)
90 TIGR02484 CitB CitB domain pro 21.8 3.5E+02 0.0077 22.0 6.0 16 8-23 223-238 (372)
91 PRK06531 yajC preprotein trans 21.8 49 0.0011 22.5 1.0 9 71-79 18-26 (113)
92 TIGR00889 2A0110 nucleoside tr 21.7 1.4E+02 0.003 22.8 3.6 40 16-55 8-47 (418)
93 PF04901 RAMP: Receptor activi 21.7 31 0.00066 23.5 0.0 29 49-79 83-111 (113)
94 PF04277 OAD_gamma: Oxaloaceta 21.7 1.9E+02 0.0041 17.2 3.6 14 58-71 19-32 (79)
95 PTZ00046 rifin; Provisional 21.6 1.5E+02 0.0032 24.1 3.8 31 48-80 315-345 (358)
96 PF15159 PIG-Y: Phosphatidylin 21.5 2.2E+02 0.0048 17.9 5.1 67 8-74 2-70 (72)
97 MTH00224 CYTB cytochrome b; Pr 21.3 2.6E+02 0.0056 22.4 5.1 27 4-37 286-312 (379)
98 MTH00145 CYTB cytochrome b; Pr 21.1 2.6E+02 0.0056 22.4 5.1 28 4-38 286-313 (379)
99 PRK01658 holin-like protein; V 21.1 2.6E+02 0.0055 18.9 4.4 12 6-17 34-45 (122)
100 PF13273 DUF4064: Protein of u 21.0 1.8E+02 0.0038 18.2 3.5 21 58-78 64-84 (100)
101 PF09604 Potass_KdpF: F subuni 20.8 1.4E+02 0.0031 15.3 3.1 21 57-77 4-24 (25)
102 cd00930 Cyt_c_Oxidase_VIII Cyt 20.6 1.4E+02 0.0031 17.2 2.6 24 1-27 10-33 (43)
103 PRK09731 putative general secr 20.6 1.7E+02 0.0036 21.3 3.6 15 13-27 44-58 (178)
104 PF10883 DUF2681: Protein of u 20.5 94 0.002 20.3 2.1 22 57-78 7-28 (87)
105 PF02060 ISK_Channel: Slow vol 20.5 1.7E+02 0.0037 20.6 3.5 30 50-79 45-74 (129)
106 PF04387 PTPLA: Protein tyrosi 20.4 2.1E+02 0.0045 20.1 4.0 62 17-79 79-159 (164)
107 PRK12646 putative monovalent c 20.1 4.3E+02 0.0094 23.2 6.6 54 15-68 438-493 (800)
No 1
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=100.00 E-value=8.5e-43 Score=224.56 Aligned_cols=78 Identities=55% Similarity=1.034 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 034893 3 LADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVILKSKKKKA 80 (80)
Q Consensus 3 ~~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~~ 80 (80)
|+||++|.+|+++++++|+|||+|++++||+|+||++|+|||||||||++|+++++++++++|+|+|++|+||+||||
T Consensus 1 ~~Dr~vG~~~l~~a~~vF~YYt~WvlllPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~vg~f~g~vmik~~~kk~ 78 (78)
T PF07297_consen 1 MSDRLVGLLMLAVALSVFTYYTIWVLLLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGVGTFLGYVMIKSKKKKA 78 (78)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=195.95 Aligned_cols=80 Identities=66% Similarity=1.146 Sum_probs=78.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 034893 1 MELADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVILKSKKKKA 80 (80)
Q Consensus 1 m~~~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~~ 80 (80)
|+..||.+|+.+..+|+++|+|||+|++++||+|++|.+|+||+||||||.+|+.+++.+++++|+|+|++|+|++|||+
T Consensus 1 ~~~~d~~vgl~lv~iSl~iFtYYT~WViilPFvDs~hiihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vMlKskkKKa 80 (81)
T KOG3488|consen 1 ATGTDQVVGLMLVYISLAIFTYYTIWVIILPFVDSMHIIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVMLKSKKKKA 80 (81)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHhhhcccccC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999885
No 3
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=97.66 E-value=0.00019 Score=48.66 Aligned_cols=63 Identities=22% Similarity=0.429 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 9 GFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVI 72 (80)
Q Consensus 9 G~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vl 72 (80)
|+..-..+.++|+=|.+|. .+|===.++--..|+|.|.||+.+|..+++..+...-+..++-+
T Consensus 7 GFv~~i~s~~~~~lyl~Wa-~lP~~~L~~lgity~P~kyWAlaiP~~~l~~~l~~~~~y~~~N~ 69 (126)
T PF08510_consen 7 GFVLYILSTVAFVLYLLWA-FLPDEWLHSLGITYYPDKYWALAIPSWLLMAMLFTYVGYPAYNL 69 (126)
T ss_pred ehHHHHHHHHHHHHHHHHH-hcCHHHHHhcCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999 44421111223479999999999999988865555555555444
No 4
>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown]
Probab=97.21 E-value=0.0011 Score=46.84 Aligned_cols=68 Identities=26% Similarity=0.562 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-ccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 034893 8 VGFLLSFISLSIFTYYTFWVIILPF-VDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVILKSKK 77 (80)
Q Consensus 8 vG~~~L~~~~~~F~YYt~Wv~vlPF-vd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vlik~~~ 77 (80)
=|+.+-.++.+.|+=|.+|. ++|- +-+.-.+ .|+|.|-||+.+|..+++..++..-..+|+=..+..|
T Consensus 10 YgF~~yiv~~~~~ViylIWa-i~P~~~l~~~gi-~y~Psk~WalAip~~l~v~~l~~~v~ll~~N~e~tt~ 78 (135)
T KOG2257|consen 10 YGFVLYIVSWTLFVIYLIWA-ITPVPILESLGI-TYYPSKYWALAIPTYLLVAVLLAYVFLLGYNFESTTK 78 (135)
T ss_pred hhhHHHHHHHHHHHHHHHhh-cccHHHHhhcCc-eeehHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Confidence 48888899999999999999 5553 2222224 5999999999999999988888777777665555544
No 5
>PF10510 PIG-S: Phosphatidylinositol-glycan biosynthesis class S protein; InterPro: IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S) is one of several key, core components of the glycosylphosphatidylinositol (GPI) trans-amidase complex that mediates GPI anchoring in the endoplasmic reticulum. Anchoring occurs when a protein's C-terminal GPI attachment signal peptide is replaced with a pre-assembled GPI []. Mammalian GPI transamidase consists of at least five components: Gaa1, Gpi8, PIG-S, PIG-T, and PIG-U, all five of which are required for its function. It is possible that Gaa1, Gpi8, PIG-S, and PIG-T form a tightly associated core that is only weakly associated with PIG-U. The exact function of PIG-S is unclear [].
Probab=92.44 E-value=0.063 Score=43.53 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=33.8
Q ss_pred cccCCCceeeccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 32 FVDTDHFIHQYFLP-QEYAIIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 32 Fvd~d~~i~~~F~p-r~yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
|+|.+=--+.|||+ .+|||++|.++=+..-.++|.+=-.--+|++|||
T Consensus 469 Ffd~sml~~lyFP~EhK~AVY~PLf~Pi~~pl~~~~~~~~k~~~~~rk~ 517 (517)
T PF10510_consen 469 FFDPSMLQQLYFPDEHKYAVYLPLFGPISVPLLLGLLKELKEWRKRRKE 517 (517)
T ss_pred hCCHhhhhhccCChhheeEeeehhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 67777667788886 6899999999777666666655555455555554
No 6
>PF15102 TMEM154: TMEM154 protein family
Probab=81.26 E-value=0.79 Score=32.77 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034893 48 YAIIIPVFAGVVLLCFL 64 (80)
Q Consensus 48 yAi~lP~~lll~~~~~v 64 (80)
.=|.||.+++++++..+
T Consensus 59 LmIlIP~VLLvlLLl~v 75 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSV 75 (146)
T ss_pred EEEeHHHHHHHHHHHHH
Confidence 45789987776666655
No 7
>PF00032 Cytochrom_B_C: Cytochrome b(C-terminal)/b6/petD; InterPro: IPR005798 In the mitochondrion of eukaryotes and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III (1.10.2.2 from EC) - also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is a analogous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (1.10.99.1 from EC), also known as the b6f complex. Cytochrome b/b6 [, ] is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. In plants and cyanobacteria, cytochrome b6 consists of two subunits encoded by the petB and petD genes. The sequence of petB is colinear with the N-terminal part of mitochondrial cytochrome b, while petD corresponds to the C-terminal part. Cytochrome b/b6 non-covalently binds two haem groups, known as b562 and b566. Four conserved histidine residues are postulated to be the ligands of the iron atoms of these two haem groups. Apart from regions around some of the histidine haem ligands, there are a few conserved regions in the sequence of b/b6. The best conserved of these regions includes an invariant P-E-W triplet which lies in the loop that separates the fifth and sixth transmembrane segments. It seems to be important for electron transfer at the ubiquinone redox site - called Qz or Qo (where o stands for outside) - located on the outer side of the membrane. This entry is the C terminus of these proteins.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016020 membrane; PDB: 2E76_B 2D2C_B 1VF5_B 2E74_B 2E75_B 2ZT9_B 2YIU_D 1Q90_D 1ZRT_C 1PPJ_P ....
Probab=78.20 E-value=9 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceee
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQ 41 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~ 41 (80)
.|+..|.++...+.++ + +.+|++|.+..-+.
T Consensus 28 p~k~~Gv~~~~~~~~~------l-~~lP~ld~~~~~~~ 58 (102)
T PF00032_consen 28 PNKLGGVIAMGLSILI------L-FLLPFLDRSPVRSP 58 (102)
T ss_dssp SSHHHHHHHHHHHHHH------H-HTHHHHTSCSSSSC
T ss_pred ccccceeeecchhhhh------H-HHHHhhcchhhhhh
Confidence 4677787776555443 2 38899997665333
No 8
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=74.65 E-value=6.8 Score=26.99 Aligned_cols=38 Identities=32% Similarity=0.577 Sum_probs=21.8
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 39 IHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 39 i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
.|.|-=|---.|++=++++++|.. .++.+.+.|.+||+
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvIg~I---lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVIGII---LLISYCIRRLRKKS 95 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHHHHH---HHHHHHHHHHS---
T ss_pred ccCccccceeehhHHHHHHHHHHH---HHHHHHHHHHhccC
Confidence 566655655556666666665543 47788888877775
No 9
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=73.22 E-value=5.5 Score=26.73 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcccc
Q 034893 51 IIPVFAGVVLLCFLC-IFIGFVILKSKKK 78 (80)
Q Consensus 51 ~lP~~lll~~~~~vg-~Fig~vlik~~~k 78 (80)
.||+++.++++..++ ..+-..|.|+++|
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 467776666555544 4455555555555
No 10
>KOG2459 consensus GPI transamidase complex, GPI17/PIG-S component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=70.61 E-value=1.2 Score=37.59 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=22.5
Q ss_pred cccCCCceeeccCC-hhHHHHHHHHHHHHHHHH
Q 034893 32 FVDTDHFIHQYFLP-QEYAIIIPVFAGVVLLCF 63 (80)
Q Consensus 32 Fvd~d~~i~~~F~p-r~yAi~lP~~lll~~~~~ 63 (80)
|+|.+=--+.|||. ++|||++|.++=++.-.+
T Consensus 487 fFdpSll~~lYFPdEqk~AVYiPLf~PI~vpil 519 (536)
T KOG2459|consen 487 FFDPSLLAQLYFPDEQKYAVYIPLFLPIVVPIL 519 (536)
T ss_pred cCCHHHHHHhhCCchheeEEeehhhhhHHHHHH
Confidence 55555556788885 789999999865544333
No 11
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=69.86 E-value=39 Score=24.41 Aligned_cols=32 Identities=6% Similarity=0.229 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 48 YAIIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 48 yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
....+-..++..+++.+||+.+....+.|+|+
T Consensus 125 ~~~~~~l~lgt~gl~~igtl~aal~~~~r~~~ 156 (215)
T PF03379_consen 125 PLLLLSLLLGTLGLAAIGTLLAALAAGARGRE 156 (215)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccccC
Confidence 34455567788999999999999999888774
No 12
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=69.13 E-value=4.4 Score=27.09 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=4.6
Q ss_pred HHHHHHHhcccc
Q 034893 67 FIGFVILKSKKK 78 (80)
Q Consensus 67 Fig~vlik~~~k 78 (80)
|++...++++|+
T Consensus 16 ~~~~~~~~rRR~ 27 (130)
T PF12273_consen 16 LFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHh
Confidence 333333444333
No 13
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=63.38 E-value=44 Score=24.11 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034893 12 LSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVILK 74 (80)
Q Consensus 12 ~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vlik 74 (80)
.=+++.....|||.++ =-|..-.+.|.++++ |.+.+.+=+.++++.+++++|+....
T Consensus 62 ~G~~~~~~l~~~t~~~-dyP~~iGGKP~~S~P-----afipi~FEltVL~aa~~~~~g~l~~~ 118 (173)
T PF11821_consen 62 TGFATAFLLQWYTNAV-DYPLNIGGKPLFSWP-----AFIPITFELTVLFAALGTVLGMLILN 118 (173)
T ss_pred HHHHHHHHHHHHHHhc-ccceecCCCCCCCCc-----ccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345556677888887 679988999988873 23444455777888899999987543
No 14
>cd00290 cytochrome_b_C Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Probab=62.50 E-value=22 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHF 38 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~ 38 (80)
.||..|.+++..+..+ .+++||+|..+.
T Consensus 79 p~k~~Gv~~~~~~i~~-------l~~lP~~~~~~~ 106 (147)
T cd00290 79 PNKLLGVLAMAASILS-------LFLVPFLENSNK 106 (147)
T ss_pred ccchHHHHHHHHHHHH-------HHHHHHHhcCCc
Confidence 4677786666444332 347899997753
No 15
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=62.41 E-value=40 Score=21.86 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccc
Q 034893 5 DRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCF-LCIFIGFVILKSKKKK 79 (80)
Q Consensus 5 D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~-vg~Fig~vlik~~~k~ 79 (80)
.|.+..++|++-.++-.|=.-|. .|.....+.+|- -..-++.+++++.+.+ ++.+-|.++-+++|+.
T Consensus 2 ~R~iAlliLvIPg~~a~yGiklM-------RD~~F~~~~~p~-~~lwlqfl~G~~lf~~G~~Fi~GfI~~RDRKrn 69 (77)
T PF11118_consen 2 QRFIALLILVIPGILAAYGIKLM-------RDTVFGILFSPF-PSLWLQFLAGLLLFAIGVGFIAGFILHRDRKRN 69 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHhHhheeecccc
Confidence 47788888888777777776666 344434444443 2446777766655443 4555556666666653
No 16
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=59.81 E-value=64 Score=23.65 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccC
Q 034893 5 DRVVGFLLSFISLSIFTYYTFWVI-ILPFVDT 35 (80)
Q Consensus 5 D~~vG~~~L~~~~~~F~YYt~Wv~-vlPFvd~ 35 (80)
-|++|.+++.+++.+..-..-++. ..|++.+
T Consensus 186 lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg~ 217 (248)
T PF07787_consen 186 LRFIGWLLMFIGFFLLFSPLYTLVDWIPLLGN 217 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhceeec
Confidence 488999999988777665554443 6777654
No 17
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=58.53 E-value=18 Score=21.08 Aligned_cols=21 Identities=14% Similarity=0.475 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034893 52 IPVFAGVVLLCFLCIFIGFVI 72 (80)
Q Consensus 52 lP~~lll~~~~~vg~Fig~vl 72 (80)
+|..+.+++..++|..+|..+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLL 38 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 899888888888888888654
No 18
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=54.50 E-value=7.7 Score=20.52 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 034893 46 QEYAIIIPVFAGVVLLCFLCIF 67 (80)
Q Consensus 46 r~yAi~lP~~lll~~~~~vg~F 67 (80)
+.|+|.+|=+++-+.-.++++|
T Consensus 2 KfYtIKLpkf~Gg~v~~~L~sf 23 (26)
T PF08183_consen 2 KFYTIKLPKFLGGVVRALLFSF 23 (26)
T ss_pred CceeeechHHHhHHHHHHHHHH
Confidence 4689999988765544444443
No 19
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=53.34 E-value=34 Score=18.19 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 034893 47 EYAIIIPVFAGVVLLCF 63 (80)
Q Consensus 47 ~yAi~lP~~lll~~~~~ 63 (80)
|.++..|++++++....
T Consensus 6 Efalv~Pvl~~~~~~~~ 22 (43)
T PF07811_consen 6 EFALVLPVLLLLLFGIV 22 (43)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999987666544
No 20
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=52.06 E-value=80 Score=22.08 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=27.8
Q ss_pred cccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 30 LPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 73 (80)
Q Consensus 30 lPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vli 73 (80)
.+..++.++.+...-.+-..+=+|...+--+...++...+...+
T Consensus 54 ~~~~~~~~~~~~~l~~~~l~iHv~~~~~~ya~~~ia~~~al~~l 97 (214)
T PF01578_consen 54 LPFFPPPAPLNPALQSPWLYIHVPLALLGYAAFAIAALAALLYL 97 (214)
T ss_pred hhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445455555555667778888777777777777775554
No 21
>CHL00058 petD cytochrome b6/f complex subunit IV
Probab=51.49 E-value=36 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceeec
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQY 42 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~ 42 (80)
.+|+.|.+.++.+. +..+++||+|.-++.|+-
T Consensus 92 P~Kl~Gv~~m~~~~-------~~L~~lP~l~~~~~~~~~ 123 (160)
T CHL00058 92 PNKLLGVLLMASVP-------AGLLTVPFLENVNKFQNP 123 (160)
T ss_pred ccchhHHHHHHHHH-------HHHHHHHHHhcccccccc
Confidence 46777766654443 245589999985655543
No 22
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=49.58 E-value=60 Score=24.57 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcccc----------cCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 15 ISLSIFTYYTFWVIILPFV----------DTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVI 72 (80)
Q Consensus 15 ~~~~~F~YYt~Wv~vlPFv----------d~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vl 72 (80)
........|.++-+++||+ +-=+.+++...||..|+.+-..+.+..+..++..++-..
T Consensus 23 ~~~~~~~~~~~~~~~~p~~~A~vla~l~~p~~~~L~k~~~~r~~a~~~~~ll~~~ii~~~~~~~~p~~ 90 (355)
T COG0628 23 LLLLLAILYFFQPILLPLLLALVLAYLLNPLVRRLEKRGIPRLLAVLLVLLLILLLIVLLGLLVIPSL 90 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566666777775 122335555589999999988888777777776665433
No 23
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=49.18 E-value=39 Score=24.88 Aligned_cols=49 Identities=10% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHH--hcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 15 ISLSIFTYYTFWVI--ILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVI 72 (80)
Q Consensus 15 ~~~~~F~YYt~Wv~--vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vl 72 (80)
.+...|..|.+=.+ ++||+ |-|..+++..-+++-.+.+..+|.+.+.+-
T Consensus 139 aal~s~~sf~lg~liPllpy~---------~~~~~~~~~~s~~~~~~aL~~~G~~~a~~~ 189 (218)
T cd02432 139 AALASAISFSVGALLPLLAIL---------LAPAAWKVPVTIIATLLALALTGYVSARLG 189 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HhcchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45666777777664 44654 234567777767777788888888888763
No 24
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=48.34 E-value=59 Score=20.06 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhccccc
Q 034893 63 FLCIFIGFVILKSKKKK 79 (80)
Q Consensus 63 ~vg~Fig~vlik~~~k~ 79 (80)
..+.|+=.++.+|+.||
T Consensus 22 ~Ftl~IRri~~~s~~kk 38 (58)
T PF13314_consen 22 SFTLFIRRILINSNAKK 38 (58)
T ss_pred HHHHHHHHHHHhccccc
Confidence 34457888888887765
No 25
>PRK13476 cytochrome b6-f complex subunit IV; Provisional
Probab=47.53 E-value=50 Score=23.78 Aligned_cols=31 Identities=13% Similarity=0.412 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceeec
Q 034893 5 DRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQY 42 (80)
Q Consensus 5 D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~ 42 (80)
+++.|.+.++.+. ...+++||+|..++.++.
T Consensus 93 ~kl~Gvl~~~~~~-------~~L~~lPfld~~~~~~~~ 123 (160)
T PRK13476 93 NKLLGIALQTLIP-------LGLMLVPFIENVNKFQNP 123 (160)
T ss_pred chHHHHHHHHHHH-------HHHHHHHHhcccccccCc
Confidence 5666655443322 234579999976655543
No 26
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=45.29 E-value=24 Score=26.66 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhccc
Q 034893 49 AIIIPVFAGVVLLCFLCIF-IGFVILKSKK 77 (80)
Q Consensus 49 Ai~lP~~lll~~~~~vg~F-ig~vlik~~~ 77 (80)
-.++|++.|+.+.+++-.. ++|+..|+|+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence 6899998887766554444 4555444443
No 27
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=44.60 E-value=37 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=20.8
Q ss_pred CchhHH-HHHHHHHHHHHHHHHHHHHHH
Q 034893 1 MELADR-VVGFLLSFISLSIFTYYTFWV 27 (80)
Q Consensus 1 m~~~D~-~vG~~~L~~~~~~F~YYt~Wv 27 (80)
|..++. .++.++-++.+..++||.+|=
T Consensus 2 ~~~~~~~~~~~~i~F~ill~ll~~~~~~ 29 (161)
T COG0711 2 MNFNDTNILWQLIAFVILLWLLKKFVWK 29 (161)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhHH
Confidence 445566 777888888888889999985
No 28
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=43.97 E-value=27 Score=26.08 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=26.7
Q ss_pred hcccccCCCceeeccC-ChhHHHHHHHHHHHHHHHH--HHHHHHHHHHhccccc
Q 034893 29 ILPFVDTDHFIHQYFL-PQEYAIIIPVFAGVVLLCF--LCIFIGFVILKSKKKK 79 (80)
Q Consensus 29 vlPFvd~d~~i~~~F~-pr~yAi~lP~~lll~~~~~--vg~Fig~vlik~~~k~ 79 (80)
-+|++++++....-.| +-++++-.+-++.++.+.- ..-+.-.+|+|+|||+
T Consensus 161 al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~ 214 (221)
T PLN02838 161 ALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKA 214 (221)
T ss_pred hchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3566776664322222 2355555555543333333 2334557899888873
No 29
>TIGR01156 cytb6/f_IV cytochrome b6/f complex subunit IV. This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene.
Probab=43.23 E-value=58 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceee
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQ 41 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~ 41 (80)
.+++.|..++..+. .-.+++||+|..++.++
T Consensus 92 P~kl~Gvl~m~~~i-------~~L~llPfld~~~~~~~ 122 (159)
T TIGR01156 92 PNKLLGVLLMAAVP-------AGLLTVPFIENVNKFQN 122 (159)
T ss_pred cchHHHHHHHHHHH-------HHHHHHHHHhccccccC
Confidence 35666655554322 23558999998765554
No 30
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=42.62 E-value=6.3 Score=27.84 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 034893 47 EYAIIIPVFAGVVLLCFLCIFI 68 (80)
Q Consensus 47 ~yAi~lP~~lll~~~~~vg~Fi 68 (80)
.-||.+|++++++++.+.+.+.
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhhe
Confidence 6789999998887776666554
No 31
>PF06699 PIG-F: GPI biosynthesis protein family Pig-F; InterPro: IPR009580 Glycosylphosphatidylinositol anchor biosynthesis protein Pig-F is involved in glycosylphosphatidylinositol (GPI) anchor biosynthesis [, , ]. ; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=42.39 E-value=1.1e+02 Score=22.35 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhccc-ccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 16 SLSIFTYYTFWVIILPF-VDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 16 ~~~~F~YYt~Wv~vlPF-vd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
..++..=--.|+...|. .|.|.|-|+++. |.+.+..+-..+|..+|
T Consensus 141 ~~~~g~~~GaWlGa~pIPLDWDRpWQ~WPi--------~~~~Ga~~G~~~G~~~~ 187 (190)
T PF06699_consen 141 YPAIGAVLGAWLGAVPIPLDWDRPWQAWPI--------TCVVGAYLGYFVGSLIG 187 (190)
T ss_pred HHHHHHHHHHHHcceeccCCCCCccccCCh--------HHHHHHHHHHHHHHHhh
Confidence 44455556789998888 899999999984 55556555555565554
No 32
>PRK01844 hypothetical protein; Provisional
Probab=42.19 E-value=45 Score=21.35 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034893 48 YAIIIPVFAGVVLLCFLCIFIGFVILK 74 (80)
Q Consensus 48 yAi~lP~~lll~~~~~vg~Fig~vlik 74 (80)
.+|.++++++++|+ ..|.|++--..+
T Consensus 5 ~~I~l~I~~li~G~-~~Gff~ark~~~ 30 (72)
T PRK01844 5 LGILVGVVALVAGV-ALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 35677776555554 455665543333
No 33
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=41.51 E-value=50 Score=24.35 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhccccc
Q 034893 64 LCIFIGFVILKSKKKK 79 (80)
Q Consensus 64 vg~Fig~vlik~~~k~ 79 (80)
+...+-..+-.++|||
T Consensus 43 iiiivli~lcssRKkK 58 (189)
T PF05568_consen 43 IIIIVLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHHHHHhhhhHH
Confidence 3333444455555555
No 34
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=41.10 E-value=1.2e+02 Score=22.61 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHH--hcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 14 FISLSIFTYYTFWVI--ILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVI 72 (80)
Q Consensus 14 ~~~~~~F~YYt~Wv~--vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vl 72 (80)
-.+++.|+-|.+=.+ ++||+ +.+|..+|+..-+++.++.+.++|.+.+..-
T Consensus 155 ~aAl~s~lsf~lG~liPLlPy~--------~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s 207 (241)
T cd02435 155 ISALTIGLSYFIGGLIPLLPYF--------FVSTVGEALLLSVIVTLVALFVFGYVKTWFT 207 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HccchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666777777652 55664 3355568888888888888888999988753
No 35
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=40.33 E-value=1.3e+02 Score=23.21 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
.|.--|...|.+++.-|.-|++.. +++--.-|++.+|-.++++..+.+-.+..
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~-------------~~~~~~~~~~~lPqaiGm~i~a~i~~~~~ 186 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIP-------------KAFHVSGWSAFLPQAIGMLIGAFIFNLFS 186 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH-------------HhcCCChhHhHHHHHHHHHHHHHHHhhcc
Confidence 355668888888988888888765 33445668888888777766555544433
No 36
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=40.23 E-value=22 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 034893 55 FAGVVLLCFLCIFIGFVILKS 75 (80)
Q Consensus 55 ~lll~~~~~vg~Fig~vlik~ 75 (80)
++.+++..++|.++|+++.+.
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~ 23 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKK 23 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556667888888877654
No 37
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=39.42 E-value=41 Score=19.54 Aligned_cols=22 Identities=14% Similarity=0.362 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 034893 57 GVVLLCFLCIFIGFVILKSKKK 78 (80)
Q Consensus 57 ll~~~~~vg~Fig~vlik~~~k 78 (80)
=+.|++.+++++..++-+++|+
T Consensus 4 ki~gigii~~~l~~vlk~~~~~ 25 (58)
T PF06686_consen 4 KIVGIGIIAAFLALVLKQAGEP 25 (58)
T ss_pred HHHHHHHHHHHHHHHHHHcCCh
Confidence 3678899999999887776654
No 38
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.35 E-value=67 Score=23.03 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=22.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH-HHHHhccc
Q 034893 45 PQEYAIIIPVFAGVVLLCFLCIFIG-FVILKSKK 77 (80)
Q Consensus 45 pr~yAi~lP~~lll~~~~~vg~Fig-~vlik~~~ 77 (80)
.|+||...=...++..+.-.|.++| ...|+.+|
T Consensus 16 ~r~waml~hls~llglllpfg~llGPlivW~~kK 49 (143)
T COG3296 16 SRDWAMLAHLSALLGLLLPFGSLLGPLIVWLLKK 49 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889998777666666555888888 44444444
No 39
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=39.21 E-value=43 Score=19.47 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 1 MELADRVVGFLLSFISLSIFTYYTFWVI 28 (80)
Q Consensus 1 m~~~D~~vG~~~L~~~~~~F~YYt~Wv~ 28 (80)
++..|+++|+.+.+++ |.-..-|++
T Consensus 10 ~s~~e~aigltv~f~~---~L~PagWVL 34 (44)
T PF02285_consen 10 LSPAEQAIGLTVCFVT---FLGPAGWVL 34 (44)
T ss_dssp --HHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH---HHhhHHHHH
Confidence 4678999998887655 344567774
No 40
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=39.09 E-value=41 Score=23.66 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 48 YAIIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 48 yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
.+.++|+- ..+|..|+.|.+.|..+||
T Consensus 82 ~~~imPlY-----tiGI~~f~lY~l~Ki~~~k 108 (152)
T PF15361_consen 82 MGQIMPLY-----TIGIVLFILYTLFKIKKKK 108 (152)
T ss_pred hhhHhHHH-----HHHHHHHHHHHHHHHHhcC
Confidence 56788875 3467789999999966554
No 41
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=37.33 E-value=32 Score=21.83 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 034893 2 ELADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDH 37 (80)
Q Consensus 2 ~~~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~ 37 (80)
+.+|-.+|..++.+-..++.-|++-.--++=-|+|+
T Consensus 28 Gls~~~LgwIL~gvf~liw~ly~~~~~~l~~~deDs 63 (67)
T PLN00082 28 GVSNGKLTWILVGVTALIWALYFSYSSTLPEGDDDS 63 (67)
T ss_pred cccCchhhhHHHHHHHHHHHHHhheecccCCCCccc
Confidence 578999999999988888888877554555444454
No 42
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.23 E-value=10 Score=27.31 Aligned_cols=14 Identities=14% Similarity=0.574 Sum_probs=11.1
Q ss_pred CCceeeccCChhHH
Q 034893 36 DHFIHQYFLPQEYA 49 (80)
Q Consensus 36 d~~i~~~F~pr~yA 49 (80)
++.+.+.||||+|.
T Consensus 2 ~~il~~i~ppr~~~ 15 (189)
T PF10211_consen 2 EDILNSILPPREWE 15 (189)
T ss_pred hhhHHhhCCchhhh
Confidence 34678899999985
No 43
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=36.58 E-value=25 Score=27.29 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 54 VFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 54 ~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
.+|.++|...+...+-.-+|+|+|.|
T Consensus 4 ~iLIIvGaiaI~aLl~hGlwt~Rke~ 29 (284)
T TIGR02205 4 IILIIVGILAIAALLFHGLWTSRKEK 29 (284)
T ss_pred ehHHHHHHHHHHHHHHcccccccccc
Confidence 35778888888888877799987743
No 44
>PRK08376 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=36.51 E-value=1.9e+02 Score=23.38 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCc-eeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 14 FISLSIFTYYTFWVIILPFVDTDHF-IHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 14 ~~~~~~F~YYt~Wv~vlPFvd~d~~-i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
.++.++-.||..|+.-.=|.++++. .++ ..++++.-.+|...+.++....|.+-.
T Consensus 438 ~l~s~ls~~yylr~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~Gl~p~ 493 (521)
T PRK08376 438 MIGSVLTLASFVKVFHTAFFGPPSEKVMN-VKEPPKPMLVPMLILAIAIIGMGLFPW 493 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhhcc-cccCChhHHHHHHHHHHHHHHHHHhhH
Confidence 3455555666677765545554321 111 112223334565555555444555433
No 45
>PRK04335 cell division protein ZipA; Provisional
Probab=36.50 E-value=30 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 034893 54 VFAGVVLLCFLCIFIGFVILKSKKK 78 (80)
Q Consensus 54 ~~lll~~~~~vg~Fig~vlik~~~k 78 (80)
.+|.++|...|...+-.-+|.|+|.
T Consensus 6 lvLiivGAlAI~ALL~HGlWtsrKe 30 (313)
T PRK04335 6 FVLIVVGALAIAALLFHGLWTSKKE 30 (313)
T ss_pred ehHHHHHHHHHHHHHHhcccccccc
Confidence 4678889999999999999999884
No 46
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=36.44 E-value=81 Score=17.68 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 034893 59 VLLCFLCIFIGFVILK 74 (80)
Q Consensus 59 ~~~~~vg~Fig~vlik 74 (80)
..+.+...|+|.+.+.
T Consensus 14 ~~v~~~~~F~gi~~w~ 29 (49)
T PF05545_consen 14 GTVLFFVFFIGIVIWA 29 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555443
No 47
>PRK01741 cell division protein ZipA; Provisional
Probab=36.27 E-value=30 Score=27.75 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 54 VFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 54 ~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
+++.++|...+-..+|+-+|.|||.|
T Consensus 5 ~iliILg~lal~~Lv~hgiWsnRrEK 30 (332)
T PRK01741 5 TILIILGILALVALVAHGIWSNRREK 30 (332)
T ss_pred ehHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 35677777778888999999998876
No 48
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=36.18 E-value=98 Score=21.54 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHH--hcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 15 ISLSIFTYYTFWVI--ILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFV 71 (80)
Q Consensus 15 ~~~~~F~YYt~Wv~--vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~v 71 (80)
.++.-|.-|.+=.+ ++||+ +.++..+++..-.++.++.+...|.+.+..
T Consensus 69 ~al~s~~sf~~g~~iPllp~~--------~~~~~~~a~~~s~~~~~~~L~~~G~~~~~~ 119 (149)
T cd02431 69 SALYTGIAYIIGVVIPILPYL--------LLSSVYLALALSVTLAVLAILIFNFYISVA 119 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566665553 55664 223436788888888888888899988865
No 49
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=36.07 E-value=21 Score=26.21 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=13.2
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 034893 44 LPQEYAIIIPVFAGVVLLC 62 (80)
Q Consensus 44 ~pr~yAi~lP~~lll~~~~ 62 (80)
||.|| +++|+++++.++.
T Consensus 156 p~ke~-~yiPAlLLL~lv~ 173 (183)
T PF11874_consen 156 PPKEW-VYIPALLLLGLVA 173 (183)
T ss_pred CCcce-EeHHHHHHHHHHH
Confidence 56667 9999998776543
No 50
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=35.58 E-value=67 Score=27.40 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034893 46 QEYAIIIPVFAGVVLLCFLCIFIGFVILKSKKK 78 (80)
Q Consensus 46 r~yAi~lP~~lll~~~~~vg~Fig~vlik~~~k 78 (80)
--||+..+..++++.+..++.|.++-..|+.|+
T Consensus 154 ~~~al~~~~~v~~l~~lvi~~~~~~r~~k~~~~ 186 (534)
T KOG3653|consen 154 LIYALIPLLLVSLLAALVILAFLGYRQRKNARE 186 (534)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 458888888888999999999999999998876
No 51
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=34.57 E-value=1.1e+02 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhcccc----------cCCCceeeccCChhHHHHHHHHH
Q 034893 14 FISLSIFTYYTFWVIILPFV----------DTDHFIHQYFLPQEYAIIIPVFA 56 (80)
Q Consensus 14 ~~~~~~F~YYt~Wv~vlPFv----------d~d~~i~~~F~pr~yAi~lP~~l 56 (80)
++....+..|..+-++.||+ +--+.+++.=.||..|+.+=.++
T Consensus 19 ~~~~~~~~l~~~~~il~P~~~A~~ia~ll~P~v~~L~r~~~~r~la~~lv~l~ 71 (344)
T PRK12287 19 MLVIILCGIRFAADIIVPFILALFIAVVLNPLVQHMVRWRVPRVLAVSLLMTI 71 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 34455556666666688885 23444555568999999864443
No 52
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=34.36 E-value=1.6e+02 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHH
Q 034893 8 VGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGV 58 (80)
Q Consensus 8 vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll 58 (80)
.|..+.....+.|.||+++-+...+=..++ .|...|.-+|.++..
T Consensus 301 ~~~~i~~~i~~~~~y~~~~~~~~~lg~~g~------l~P~laaw~P~iif~ 345 (356)
T PRK15071 301 MGARVVTGISFGFVFYVSNEIFGPLSLVYG------IPPIIGALLPSLLFL 345 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcC------ccHHHHHHHHHHHHH
Confidence 345555556678999999996665544333 455889999988553
No 53
>PRK07691 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=33.71 E-value=2.5e+02 Score=22.59 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHH
Q 034893 14 FISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFI 68 (80)
Q Consensus 14 ~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fi 68 (80)
.++.++-.||..|++..-|.++++.-..--.+....-.+|...+.+.....|.+-
T Consensus 415 ~l~s~l~~~y~lr~~~~~f~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~p 469 (496)
T PRK07691 415 LLSSLLVLYSVIKIFLKGFWGEPKGYDLNNKVPVKKLLLPAVVLVAITILYGLGA 469 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccccCcchhHHHHHHHHHHHHHHHHHhh
Confidence 3455666677788766666653321110010111223456665555555555543
No 54
>MTH00151 ND5 NADH dehydrogenase subunit 5; Provisional
Probab=33.58 E-value=2.8e+02 Score=23.06 Aligned_cols=61 Identities=8% Similarity=0.081 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCc--eeeccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 9 GFLLSFISLSIFTYYTFWVIILPFVDTDHF--IHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGF 70 (80)
Q Consensus 9 G~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~--i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~ 70 (80)
...+..++..+-.+|..++...-|.++.+. .++ ..+..+...+|...+.++....|.+...
T Consensus 374 ~~~l~~l~s~lt~~Y~lr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~~i~~G~~~~~ 436 (565)
T MTH00151 374 MVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSS-KSDEDFYVSLPMLLLSLGALIGGKLLQS 436 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccc-CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677788888876666654321 111 1122355678888777776666766543
No 55
>COG0795 Predicted permeases [General function prediction only]
Probab=33.14 E-value=1.8e+02 Score=22.04 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHH
Q 034893 9 GFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAG 57 (80)
Q Consensus 9 G~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~ll 57 (80)
|..++...+..|.||.++.+....-. ...+|-..|..+|.++.
T Consensus 308 ~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~l~p~~a~~~p~~i~ 350 (364)
T COG0795 308 GLRLLGGILLGLLFYVLLFLLGALAL------AGKLPPFLAAWLPNLVF 350 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------cCCcCHHHHHHHHHHHH
Confidence 44455556666999999998777765 34567778888887643
No 56
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=33.01 E-value=1e+02 Score=22.99 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHH--hcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 15 ISLSIFTYYTFWVI--ILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFV 71 (80)
Q Consensus 15 ~~~~~F~YYt~Wv~--vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~v 71 (80)
.++..|+-|.+=.+ ++||+ +.++..+++..-+++.++.+.++|.+.+..
T Consensus 153 aAl~sflsF~ig~liPLLPf~--------~~~~~~~~~~~s~~~~~~~L~~lG~~~a~~ 203 (234)
T cd02433 153 AAVSSFLLFALGALIPVLPFL--------FGMSGLAALVLSVLLVGLALLATGAVTGLL 203 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666553 55664 123334677776777777788888888764
No 57
>PF02405 Permease: Permease; InterPro: IPR003453 This domain has no known function nor do any of the proteins that possess it. The aligned region is approximately 150 amino acids long.
Probab=32.85 E-value=45 Score=24.32 Aligned_cols=37 Identities=14% Similarity=0.324 Sum_probs=31.2
Q ss_pred CceeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 37 HFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVIL 73 (80)
Q Consensus 37 ~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vli 73 (80)
+|++.+.-||-.|..+-..++.+....++.+-|+...
T Consensus 97 ~p~~yLv~PR~~A~~v~~p~L~~~~~~~~~~gg~~~~ 133 (215)
T PF02405_consen 97 DPIRYLVVPRLLAMVVAMPILTVIFDVIALLGGYLVA 133 (215)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999888888888888888777654
No 58
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=32.65 E-value=17 Score=19.15 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 034893 46 QEYAIIIPVFAGVVLLCFLCIF 67 (80)
Q Consensus 46 r~yAi~lP~~lll~~~~~vg~F 67 (80)
+-|.|.+|=+++-+.=.++++|
T Consensus 2 kfytiklpkflgg~vra~l~~f 23 (26)
T PRK14741 2 KFYTIKLPKFLGGIVRAMLGSF 23 (26)
T ss_pred ceEEEeccHHHHHHHHHHHHHh
Confidence 3578889988877766666665
No 59
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=31.81 E-value=35 Score=23.08 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=6.7
Q ss_pred HHHHHhccccc
Q 034893 69 GFVILKSKKKK 79 (80)
Q Consensus 69 g~vlik~~~k~ 79 (80)
-+.|++.+||+
T Consensus 18 yF~~iRPQkKr 28 (109)
T PRK05886 18 MYFASRRQRKA 28 (109)
T ss_pred HHHHccHHHHH
Confidence 35567776664
No 60
>PF14150 YesK: YesK-like protein
Probab=31.66 E-value=1.5e+02 Score=19.21 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=17.9
Q ss_pred eeeccCChhHHHHHHHHHHHHHH
Q 034893 39 IHQYFLPQEYAIIIPVFAGVVLL 61 (80)
Q Consensus 39 i~~~F~pr~yAi~lP~~lll~~~ 61 (80)
+++-+|+|.+...+|..+.++.+
T Consensus 19 lr~r~p~k~~~~il~~ililis~ 41 (81)
T PF14150_consen 19 LRKRFPKKQPEIILPLILILISL 41 (81)
T ss_pred HHHhCCCcchhHHHHHHHHHHHH
Confidence 47889999999999966555544
No 61
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=31.30 E-value=83 Score=21.90 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhc
Q 034893 62 CFLCIFIGFVILKS 75 (80)
Q Consensus 62 ~~vg~Fig~vlik~ 75 (80)
+++|..+|+.++|.
T Consensus 110 ~~~g~~~g~~~~r~ 123 (154)
T PRK10862 110 ALLGGVGGFLLARG 123 (154)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566667666663
No 62
>COG5605 Predicted small integral membrane protein [Function unknown]
Probab=30.87 E-value=65 Score=22.10 Aligned_cols=43 Identities=33% Similarity=0.592 Sum_probs=26.9
Q ss_pred HHHHHHhcccc-cCCCceeecc-------CChhHHHHHHHHHHHHHHHHHH
Q 034893 23 YTFWVIILPFV-DTDHFIHQYF-------LPQEYAIIIPVFAGVVLLCFLC 65 (80)
Q Consensus 23 Yt~Wv~vlPFv-d~d~~i~~~F-------~pr~yAi~lP~~lll~~~~~vg 65 (80)
|.=|.+++-|. -...-+-.-| +.-.|||++|-++.++......
T Consensus 47 ylrwslilifmilkaglivavfmhmawerlal~yaiilppllvlvfv~lmv 97 (115)
T COG5605 47 YLRWSLILIFMILKAGLIVAVFMHMAWERLALVYAIILPPLLVLVFVVLMV 97 (115)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45688777664 2233333333 3457999999998887766543
No 63
>PRK12644 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=29.93 E-value=3.5e+02 Score=24.40 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhcccccCCC-----ceeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 14 FISLSIFTYYTFWVIILPFVDTDH-----FIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 14 ~~~~~~F~YYt~Wv~vlPFvd~d~-----~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
.++.++-.+|..|.+...|.++.+ ...+ .-++++...+|...+.++...+|.+-+
T Consensus 412 ~l~svlt~~Y~lr~~~~~f~g~~~~~~~~~~~~-~~~~~~~~~~p~~iLa~~~l~lGl~p~ 471 (965)
T PRK12644 412 VLGSILTVAYSLRFLWGAFARKPGAFPSVAVTE-MHRPSPLFLAPPAVLAVLGLVLGLLPA 471 (965)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccccc-CCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556667777777876432 1111 123455667787777666666666544
No 64
>PRK12663 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=28.57 E-value=3.1e+02 Score=22.04 Aligned_cols=57 Identities=19% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHH
Q 034893 12 LSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFI 68 (80)
Q Consensus 12 ~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fi 68 (80)
++.++..+-.+|..|++..=|.++.+.-+.-..|..+....|...+.+.....|.+-
T Consensus 410 i~ll~s~ls~~y~lr~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~p 466 (497)
T PRK12663 410 LMLITSLITMYSLFRIFFLAYWGDKDGEEVNFKPIPLYRKLPLSILAVVVIAMGIAA 466 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhH
Confidence 334455555666667754445543221111111222233556665555555555543
No 65
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=28.15 E-value=65 Score=27.60 Aligned_cols=38 Identities=18% Similarity=0.426 Sum_probs=28.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcccccC
Q 034893 43 FLPQEYAIIIPVFAGVVLLCFL----CIFIGFVILKSKKKKA 80 (80)
Q Consensus 43 F~pr~yAi~lP~~lll~~~~~v----g~Fig~vlik~~~k~~ 80 (80)
.|.+-++|.+|++++-+...++ ..|++..=.|..+++|
T Consensus 290 tPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek 331 (574)
T COG3263 290 TPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREK 331 (574)
T ss_pred CHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhcccccCccch
Confidence 5788889999999998888875 5666665556555543
No 66
>MTH00207 ND5 NADH dehydrogenase subunit 5; Provisional
Probab=27.94 E-value=3.6e+02 Score=22.52 Aligned_cols=58 Identities=9% Similarity=0.124 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCC--ceeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 11 LLSFISLSIFTYYTFWVIILPFVDTDH--FIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 11 ~~L~~~~~~F~YYt~Wv~vlPFvd~d~--~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
.+..+++++-.+|..++...-|..+.+ +.+. ..+..+...+|...+.++....|.+..
T Consensus 379 ~i~ll~s~lt~~Y~lRl~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~L~~~~i~~G~~~~ 438 (572)
T MTH00207 379 LMIFLATALTAAYSTRFTLAVLWSPNSSSPYHH-LEDEDKSLTTPMLLLTLGAITSGSALN 438 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-cccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777776544543321 1111 222234456677666555555555443
No 67
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=27.89 E-value=35 Score=21.93 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034893 48 YAIIIPVFAGVVLLCFLCIFI 68 (80)
Q Consensus 48 yAi~lP~~lll~~~~~vg~Fi 68 (80)
-||.+|.++++..+..+.+.+
T Consensus 32 vaVviPl~L~LCiLvl~yai~ 52 (74)
T PF11857_consen 32 VAVVIPLVLLLCILVLIYAIF 52 (74)
T ss_pred EEEeHHHHHHHHHHHHHHHhh
Confidence 368899998887776665543
No 68
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=27.83 E-value=2.5e+02 Score=20.73 Aligned_cols=37 Identities=30% Similarity=0.526 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhccc--ccCCCceeeccCChhHHH
Q 034893 13 SFISLSIFTYYTFWVIILPF--VDTDHFIHQYFLPQEYAI 50 (80)
Q Consensus 13 L~~~~~~F~YYt~Wv~vlPF--vd~d~~i~~~F~pr~yAi 50 (80)
-.++..+++-+-+|.=++-- +|.||..| +|-|.+-+-
T Consensus 37 ~gis~~l~~l~~i~~dlL~~~Gid~~~lt~-~~SP~~V~~ 75 (177)
T PF14965_consen 37 SGISSALNTLWRIWTDLLDVLGIDGSNLTH-YFSPGGVQT 75 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccccc-ccCHHHHHH
Confidence 45677777777777765555 68999999 777766554
No 69
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=27.28 E-value=43 Score=22.26 Aligned_cols=12 Identities=25% Similarity=0.683 Sum_probs=7.1
Q ss_pred HHHHHHhccccc
Q 034893 68 IGFVILKSKKKK 79 (80)
Q Consensus 68 ig~vlik~~~k~ 79 (80)
.-..+++++|||
T Consensus 31 ~yf~~~RpqkK~ 42 (106)
T PRK05585 31 FYFLIIRPQQKR 42 (106)
T ss_pred HHHHhccHHHHH
Confidence 345567776664
No 70
>PRK00523 hypothetical protein; Provisional
Probab=27.10 E-value=1.1e+02 Score=19.50 Aligned_cols=26 Identities=15% Similarity=0.099 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034893 48 YAIIIPVFAGVVLLCFLCIFIGFVILK 74 (80)
Q Consensus 48 yAi~lP~~lll~~~~~vg~Fig~vlik 74 (80)
.+|.+.++++++|+ ..|.|++--..+
T Consensus 6 l~I~l~i~~li~G~-~~Gffiark~~~ 31 (72)
T PRK00523 6 LALGLGIPLLIVGG-IIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 35555555544333 445555543333
No 71
>PRK06525 hydrogenase 4 subunit D; Validated
Probab=26.93 E-value=3.1e+02 Score=22.05 Aligned_cols=49 Identities=4% Similarity=-0.199 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHH
Q 034893 17 LSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLC 65 (80)
Q Consensus 17 ~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg 65 (80)
..+-.+|.++++..-|.++.+.-..-..+..+.-.+|.+.+.++...+|
T Consensus 423 s~ls~~y~lr~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~ 471 (479)
T PRK06525 423 SVASFAWFLRWFGRVVFGEPSEAVADAAPLPGSMKLVLIVLIVMSLVSP 471 (479)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccccCCCCchHHHHHHHHHHHHHHHH
Confidence 3444445566655555554322111112223445678776555444444
No 72
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=26.91 E-value=1.4e+02 Score=18.94 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 49 AIIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 49 Ai~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
.+++-.+...+.+ .+|+-+|+-+-+++|+|
T Consensus 55 ~iiiS~i~s~lal-li~~~~G~g~y~~~k~k 84 (84)
T PF09716_consen 55 KIIISTIASGLAL-LIATALGYGYYKKKKKK 84 (84)
T ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHhhccCC
Confidence 3445554433333 67777798888777765
No 73
>KOG3144 consensus Ethanolamine-P-transferase GPI11/PIG-F, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=26.65 E-value=1.5e+02 Score=22.27 Aligned_cols=45 Identities=24% Similarity=0.390 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhccc-ccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 17 LSIFTYYTFWVIILPF-VDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 17 ~~~F~YYt~Wv~vlPF-vd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
-++|..--.|..-.|. .|.|.+-|.|+.| .+++-.+-..+|.-+|
T Consensus 145 ~si~~~vGAW~ga~viPLDWdR~WQ~wPIp--------~vvGa~lGa~~g~ii~ 190 (196)
T KOG3144|consen 145 NSIFIFVGAWAGAVVIPLDWDRDWQAWPIP--------IVVGAFLGAAVGYIIG 190 (196)
T ss_pred HHHHHHHHHHHhcccccCCCCCchhhCCch--------HHHHHHHHHHHHHHHh
Confidence 4566777889987777 8999999999865 4444444444444444
No 74
>PRK11633 cell division protein DedD; Provisional
Probab=26.38 E-value=18 Score=27.13 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFV 33 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFv 33 (80)
=+|+||.++|++..+| +||-+
T Consensus 6 qnRLVGtiVLVALgVI---------fLP~l 26 (226)
T PRK11633 6 QNRLVGTIVLVALGVI---------VLPGL 26 (226)
T ss_pred hhhhhhhhhhheehhe---------ecccc
Confidence 4899999998876654 67875
No 75
>TIGR01960 ndhF3_CO2 NAD(P)H dehydrogenase, subunit NdhF3 family. This family represents a subfamily of NAD(P)H dehydrogenase subunit 5, or ndhF. It is restricted to two paralogs in each completed cyanobacterial genome, in which several subtypes of ndhF are found. Included in this family is NdhF3, shown to play a role in high-affinity CO2 uptake in Synechococcus sp. PCC7002. In all cases, neighboring genes include a paralog of ndhD but do include other NAD(P)H dehydrogenase subunits. Instead, genes related to C02 uptake tend to be found nearby.
Probab=26.11 E-value=3.6e+02 Score=22.77 Aligned_cols=55 Identities=11% Similarity=0.052 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHH
Q 034893 11 LLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLC 65 (80)
Q Consensus 11 ~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg 65 (80)
.++.++..+-.+|..+.+..=|..+.+.-++-..+..+...+|.+.+.++....|
T Consensus 417 ~i~ll~s~lt~~y~~r~~~~~f~g~~~~~~~~~~e~~~~m~~pl~~L~~~~v~~G 471 (606)
T TIGR01960 417 GVLLVVNLLTAFNLTRVFRLVFGGEAKPMTRRSPEVFWPMALPMVVLIGLVLHLP 471 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 3444566666667777766666654332111112223455677766555544444
No 76
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.93 E-value=38 Score=21.52 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=8.2
Q ss_pred HHHHHHHHhccccc
Q 034893 66 IFIGFVILKSKKKK 79 (80)
Q Consensus 66 ~Fig~vlik~~~k~ 79 (80)
.+..+.+++++||+
T Consensus 14 ~i~yf~~~rpqkK~ 27 (84)
T TIGR00739 14 LIFYFLIIRPQRKR 27 (84)
T ss_pred HHHHHheechHHHH
Confidence 33455677776664
No 77
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=25.32 E-value=2.2e+02 Score=20.75 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=20.4
Q ss_pred ceee-ccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 38 FIHQ-YFLPQEYAIIIPVFAGVVLLCFLCIFIGF 70 (80)
Q Consensus 38 ~i~~-~F~pr~yAi~lP~~lll~~~~~vg~Fig~ 70 (80)
.+++ .-.||-.|+.+=.++.+..+.....+++.
T Consensus 42 ~L~~~~~~~r~la~~l~~l~~~~~l~~~i~~l~~ 75 (341)
T TIGR02872 42 FLEKKLKLPRALAVFIVLLIFLGIIGGLLYILVT 75 (341)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 34789888877666655555555555544
No 78
>PRK06473 NAD(P)H-quinone oxidoreductase subunit D4; Validated
Probab=24.71 E-value=3.8e+02 Score=21.72 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 12 LSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 12 ~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
++.+++.+-.+|..|.+-.=|.++.+.-..-.++-.+.-..|...+.+.....|.+-+
T Consensus 411 ~~~~~s~ls~~y~l~~~~~~f~g~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~Gi~p~ 468 (500)
T PRK06473 411 LCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERLPALVLAVLIVVLGIQPS 468 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 4445555666777777655555432111111122123345566665555555565544
No 79
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.62 E-value=85 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Q 034893 53 PVFAGVVLLCFLCIFIGFVILKSKKK 78 (80)
Q Consensus 53 P~~lll~~~~~vg~Fig~vlik~~~k 78 (80)
|.+++-+.+++..++.+-+.+-|+++
T Consensus 34 PFilLnl~lS~~Aa~~ap~IlmsQNR 59 (108)
T PF06210_consen 34 PFILLNLVLSLEAAYQAPLILMSQNR 59 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46778888999999998666555443
No 80
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion]
Probab=24.48 E-value=86 Score=22.00 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 034893 47 EYAIIIPVFAGVVLLCF 63 (80)
Q Consensus 47 ~yAi~lP~~lll~~~~~ 63 (80)
|+|+..|.++++++.++
T Consensus 26 eFAlvap~ll~l~~g~v 42 (185)
T COG4961 26 EFALVAPPLLLLVFGIV 42 (185)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899998877766554
No 81
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.47 E-value=89 Score=22.26 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034893 2 ELADRVVGFLLSFISLSIFTYYTFWVIILP 31 (80)
Q Consensus 2 ~~~D~~vG~~~L~~~~~~F~YYt~Wv~vlP 31 (80)
|.+|-++|..|+.+-..++.-|++-.-=+.
T Consensus 100 Glsn~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 100 GLSNNLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred cccCchhHHHHHHHHHHHHHHHHhhccccC
Confidence 678999999999998888888887765444
No 82
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=24.19 E-value=1.3e+02 Score=17.32 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhc
Q 034893 62 CFLCIFIGFVILKS 75 (80)
Q Consensus 62 ~~vg~Fig~vlik~ 75 (80)
..++.|+|.+.|-=
T Consensus 18 ~~~~~Figiv~wa~ 31 (48)
T cd01324 18 YLALFFLGVVVWAF 31 (48)
T ss_pred HHHHHHHHHHHHHh
Confidence 45677777776643
No 83
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.71 E-value=73 Score=21.48 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhccc
Q 034893 61 LCFLCIFIGFVILKSKK 77 (80)
Q Consensus 61 ~~~vg~Fig~vlik~~~ 77 (80)
..+||.+++...-++.+
T Consensus 9 G~iiG~~~~r~~~~~~~ 25 (128)
T PF06295_consen 9 GLIIGFLIGRLTSSNQQ 25 (128)
T ss_pred HHHHHHHHHHHhccchh
Confidence 33566666655555543
No 84
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=23.48 E-value=90 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=17.2
Q ss_pred CCCceeeccCChhHHHHHHHHHHHHHHH
Q 034893 35 TDHFIHQYFLPQEYAIIIPVFAGVVLLC 62 (80)
Q Consensus 35 ~d~~i~~~F~pr~yAi~lP~~lll~~~~ 62 (80)
-||++. ..+||.|.+.+-++++++++.
T Consensus 8 ~~~~~~-~~~p~~~~~~~~~~~~~~~~l 34 (421)
T TIGR03794 8 LDQLVQ-VVSPRSWLALAALGVIVVAAL 34 (421)
T ss_pred Hhhhhe-eccHHHHHHHHHHHHHHHHHH
Confidence 466654 678899998877744333333
No 85
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=23.17 E-value=1.8e+02 Score=24.46 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=25.6
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 034893 39 IHQYFLPQEYAIIIPVFAGVVLLCFLCIFIGFVILKSK 76 (80)
Q Consensus 39 i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig~vlik~~ 76 (80)
.+..|-+.+++.++|..+...+.......++.-+.+++
T Consensus 73 s~~LFG~~~~a~RLpsaL~~~lt~llvy~larrl~~~r 110 (552)
T PRK13279 73 GQWLFGDNNFGVRFGSVFSTLLSALLVYWLALRLWRDR 110 (552)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 45678899999999998666555544444555554443
No 86
>PRK11677 hypothetical protein; Provisional
Probab=22.88 E-value=75 Score=22.14 Aligned_cols=18 Identities=11% Similarity=-0.117 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034893 56 AGVVLLCFLCIFIGFVIL 73 (80)
Q Consensus 56 lll~~~~~vg~Fig~vli 73 (80)
++++...++|.+++...-
T Consensus 8 i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 344444455666665433
No 87
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=22.82 E-value=79 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034893 2 ELADRVVGFLLSFISLSIFTYYTFWVIIL 30 (80)
Q Consensus 2 ~~~D~~vG~~~L~~~~~~F~YYt~Wv~vl 30 (80)
|.+|-++|..++.+-..++.-|++-.--+
T Consensus 89 Glsn~~LgwIL~gVf~liw~ly~~~~~~l 117 (128)
T PLN00077 89 GLSNNLLGWILLGVFGLIWSLYTTYTSDL 117 (128)
T ss_pred cccCchhhHHHHhHHHHHHHHHhheeccc
Confidence 57899999999998888888887765443
No 88
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=22.69 E-value=1.2e+02 Score=15.26 Aligned_cols=10 Identities=40% Similarity=1.109 Sum_probs=4.1
Q ss_pred HHHHHhcccc
Q 034893 69 GFVILKSKKK 78 (80)
Q Consensus 69 g~vlik~~~k 78 (80)
+....+.+|+
T Consensus 15 ~~~~~rrrk~ 24 (26)
T TIGR02595 15 GFLLLRRRRK 24 (26)
T ss_pred HHHHHhhccc
Confidence 3334444443
No 89
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=22.43 E-value=4.9e+02 Score=22.43 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 7 VVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 7 ~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
+.|.++..+...+..--....+++|.++.-+. ..-+-.....|.++.+++...+--.+.
T Consensus 388 ~~G~li~~vv~fl~~~~i~~~vvlPi~~~~~~----~~~~~l~~~~p~~~~~~~~~ilQ~~~a 446 (617)
T PF14752_consen 388 LWGFLIQQVVFFLCFLFIAFLVVLPILHGRNL----LLFWILGSIWPFWLVLVLAVILQNILA 446 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655555555555555568999976442 222677778899988888777666555
No 90
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=21.84 E-value=3.5e+02 Score=21.97 Aligned_cols=16 Identities=38% Similarity=0.469 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 034893 8 VGFLLSFISLSIFTYY 23 (80)
Q Consensus 8 vG~~~L~~~~~~F~YY 23 (80)
-|+++++++|++.+-|
T Consensus 223 yGF~l~f~aT~va~~y 238 (372)
T TIGR02484 223 GGFGLTFLSTVAAFVY 238 (372)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788888888775544
No 91
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.82 E-value=49 Score=22.48 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=6.1
Q ss_pred HHHhccccc
Q 034893 71 VILKSKKKK 79 (80)
Q Consensus 71 vlik~~~k~ 79 (80)
.|++.+||+
T Consensus 18 f~iRPQkKr 26 (113)
T PRK06531 18 FMQRQQKKQ 26 (113)
T ss_pred heechHHHH
Confidence 368777764
No 92
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=21.74 E-value=1.4e+02 Score=22.78 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhcccccCCCceeeccCChhHHHHHHHH
Q 034893 16 SLSIFTYYTFWVIILPFVDTDHFIHQYFLPQEYAIIIPVF 55 (80)
Q Consensus 16 ~~~~F~YYt~Wv~vlPFvd~d~~i~~~F~pr~yAi~lP~~ 55 (80)
+...|.||..|....|+....-.-+.=+-+.+..+..-+.
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~ 47 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSST 47 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5567899999998888864322111114455555554444
No 93
>PF04901 RAMP: Receptor activity modifying family ; InterPro: IPR006985 The calcitonin-receptor-like receptor can function as either a calcitonin-gene-related peptide or an adrenomedullin receptor. The receptors function is modified by receptor activity modifying protein or RAMP. RAMPs are single-transmembrane-domain proteins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0008277 regulation of G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2YX8_A 3N7R_C 3N7P_D 3N7S_C 2XVT_A 3AQF_A 3AQE_B.
Probab=21.71 E-value=31 Score=23.51 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 49 AIIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 49 Ai~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
.|.+|.++.=+.++.+. ++.|.|||++.+
T Consensus 83 ~iL~~~I~~Pi~lt~~m--~~LVVw~sK~~e 111 (113)
T PF04901_consen 83 SILCPLIIVPILLTLLM--TALVVWRSKRSE 111 (113)
T ss_dssp -------------------------------
T ss_pred ceeeHHHHHHHHHHHHH--HHheeeeccCcC
Confidence 46677766666666665 678899998764
No 94
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.70 E-value=1.9e+02 Score=17.21 Aligned_cols=14 Identities=14% Similarity=0.384 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 034893 58 VVLLCFLCIFIGFV 71 (80)
Q Consensus 58 l~~~~~vg~Fig~v 71 (80)
++.+.++-..++.+
T Consensus 19 L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 19 LILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 95
>PTZ00046 rifin; Provisional
Probab=21.60 E-value=1.5e+02 Score=24.08 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 034893 48 YAIIIPVFAGVVLLCFLCIFIGFVILKSKKKKA 80 (80)
Q Consensus 48 yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~~ 80 (80)
-||...+++.++.+. |.. |=|+.+|-|||||
T Consensus 315 taIiaSiiAIvVIVL-IMv-IIYLILRYRRKKK 345 (358)
T PTZ00046 315 TAIIASIVAIVVIVL-IMV-IIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHH-HHH-HHHHHHHhhhcch
Confidence 356666665555544 333 3455556555553
No 96
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=21.49 E-value=2.2e+02 Score=17.86 Aligned_cols=67 Identities=13% Similarity=0.349 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccC-CCceeecc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034893 8 VGFLLSFISLSIFTYYTFWVIILPFVDT-DHFIHQYF-LPQEYAIIIPVFAGVVLLCFLCIFIGFVILK 74 (80)
Q Consensus 8 vG~~~L~~~~~~F~YYt~Wv~vlPFvd~-d~~i~~~F-~pr~yAi~lP~~lll~~~~~vg~Fig~vlik 74 (80)
.|.+.++++.+.|+=.+-++.+-...++ ++++-+.- -++-|...+|+.+=+.........+|.=+-|
T Consensus 2 ~G~~~il~~~v~fv~~~y~~v~s~~~p~~~~~~~~~~~~D~yY~lLvPl~iPv~~~~vy~nWls~k~Fr 70 (72)
T PF15159_consen 2 LGWLLILFTLVFFVGFFYAAVFSKLLPPTGNSILDAIQNDWYYCLLVPLTIPVTIVFVYFNWLSWKFFR 70 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCCCCChhHHHHhcCcceeeehhhhhhHHHHHHHHHHHhHHHhc
Confidence 4777778888888777777766666643 44433333 5778999999988888777777777754443
No 97
>MTH00224 CYTB cytochrome b; Provisional
Probab=21.25 E-value=2.6e+02 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDH 37 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~ 37 (80)
.+|+-|.+.+..+..+ .+++|+.|.++
T Consensus 286 P~Kl~Gvl~l~~sili-------L~~lP~~~~~~ 312 (379)
T MTH00224 286 PNKLGGVVALFAAILI-------LFILPLTSVMN 312 (379)
T ss_pred chhhHHHHHHHHHHHH-------HHHHHHhcccc
Confidence 4788888887765554 34789998664
No 98
>MTH00145 CYTB cytochrome b; Provisional
Probab=21.12 E-value=2.6e+02 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.572 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHF 38 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~ 38 (80)
.||+.|.+.++.+..++ +++||+|..+.
T Consensus 286 P~KlgGvlal~lsi~iL-------flLP~i~~~~~ 313 (379)
T MTH00145 286 PNKLGGVIALVMSIVIL-------FFLPLLHVGKF 313 (379)
T ss_pred CchhHHHHHHHHHHHHH-------HHHHHHhhccc
Confidence 47788877775443332 25899986543
No 99
>PRK01658 holin-like protein; Validated
Probab=21.05 E-value=2.6e+02 Score=18.92 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 034893 6 RVVGFLLSFISL 17 (80)
Q Consensus 6 ~~vG~~~L~~~~ 17 (80)
-.+|+.+|.+++
T Consensus 34 sViGmlLL~~~L 45 (122)
T PRK01658 34 SIIGIFLLLLLL 45 (122)
T ss_pred HHHHHHHHHHHH
Confidence 355666554443
No 100
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=21.03 E-value=1.8e+02 Score=18.17 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 034893 58 VVLLCFLCIFIGFVILKSKKK 78 (80)
Q Consensus 58 l~~~~~vg~Fig~vlik~~~k 78 (80)
....+.+-.+++..++|+++|
T Consensus 64 ~~ii~~il~iia~i~ikk~~k 84 (100)
T PF13273_consen 64 IAIISSILGIIASILIKKNPK 84 (100)
T ss_pred HHHHHHHHHHHHHHHHcCCch
Confidence 334555666788888888555
No 101
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=20.79 E-value=1.4e+02 Score=15.30 Aligned_cols=21 Identities=14% Similarity=0.520 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 034893 57 GVVLLCFLCIFIGFVILKSKK 77 (80)
Q Consensus 57 ll~~~~~vg~Fig~vlik~~~ 77 (80)
+.+...++..++.+.+++..|
T Consensus 4 ~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 4 GGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 444555566788888887654
No 102
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=20.59 E-value=1.4e+02 Score=17.20 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=15.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 1 MELADRVVGFLLSFISLSIFTYYTFWV 27 (80)
Q Consensus 1 m~~~D~~vG~~~L~~~~~~F~YYt~Wv 27 (80)
++..|+++|....+++... =..|+
T Consensus 10 ~s~~E~aigl~~~f~~~L~---p~gWV 33 (43)
T cd00930 10 LSAAESAIGLSVFFTTFLL---PAGWV 33 (43)
T ss_pred CCHHHHHHHHHHHHHHHHh---hHHHH
Confidence 4678999998887655433 34555
No 103
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=20.58 E-value=1.7e+02 Score=21.33 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034893 13 SFISLSIFTYYTFWV 27 (80)
Q Consensus 13 L~~~~~~F~YYt~Wv 27 (80)
-++.++.++||.+|-
T Consensus 44 g~vL~l~i~Y~~iWq 58 (178)
T PRK09731 44 VVFLFSVGYYVLIWQ 58 (178)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334555667999997
No 104
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.46 E-value=94 Score=20.31 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 034893 57 GVVLLCFLCIFIGFVILKSKKK 78 (80)
Q Consensus 57 ll~~~~~vg~Fig~vlik~~~k 78 (80)
.+.+.+++...+|++.+|.+|-
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777788888887653
No 105
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=20.46 E-value=1.7e+02 Score=20.63 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 50 IIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 50 i~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
++|=++.+..++..+|..+|++--|.++++
T Consensus 45 lYIL~vmgfFgff~~gImlsyvRSKK~E~s 74 (129)
T PF02060_consen 45 LYILVVMGFFGFFTVGIMLSYVRSKKREHS 74 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 667777788888888999998765555443
No 106
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=20.38 E-value=2.1e+02 Score=20.15 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcc---------------cccCCCceeeccCChh--HHHHHHHHHHHHHHH--HHHHHHHHHHHhccc
Q 034893 17 LSIFTYYTFWVIILP---------------FVDTDHFIHQYFLPQE--YAIIIPVFAGVVLLC--FLCIFIGFVILKSKK 77 (80)
Q Consensus 17 ~~~F~YYt~Wv~vlP---------------Fvd~d~~i~~~F~pr~--yAi~lP~~lll~~~~--~vg~Fig~vlik~~~ 77 (80)
.....-||.|..+-| .+++.. ....-.|.+ ++...+.++....+. -..-++-.+|+|+||
T Consensus 79 ~L~WLRYs~FivLYPlG~~~E~~~~~~al~~~~~~~-~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRr 157 (164)
T PF04387_consen 79 WLTWLRYSAFIVLYPLGILSELLLIYRALPYIKETK-RYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRR 157 (164)
T ss_pred HHHHHHHhhHhhccchHHHHHHHHHHHhCcccccCC-eeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777776655 444432 233334433 333444443333322 234556678999888
Q ss_pred cc
Q 034893 78 KK 79 (80)
Q Consensus 78 k~ 79 (80)
|+
T Consensus 158 K~ 159 (164)
T PF04387_consen 158 KK 159 (164)
T ss_pred HH
Confidence 74
No 107
>PRK12646 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=20.11 E-value=4.3e+02 Score=23.18 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcccccCCCc--eeeccCChhHHHHHHHHHHHHHHHHHHHHH
Q 034893 15 ISLSIFTYYTFWVIILPFVDTDHF--IHQYFLPQEYAIIIPVFAGVVLLCFLCIFI 68 (80)
Q Consensus 15 ~~~~~F~YYt~Wv~vlPFvd~d~~--i~~~F~pr~yAi~lP~~lll~~~~~vg~Fi 68 (80)
++.++-.+|..+.+...|+++.++ ..+--....+...+|..++.++...+|.+-
T Consensus 438 l~svls~~Y~lr~~~~~f~g~~~~~~~~~~~~~~~~~m~~p~~iLa~~~~~~G~~p 493 (800)
T PRK12646 438 IASIFTFTYALYMVKEVFWGKYDSKVFTKKNIHEPWLFSLPSLILMVLVPVIFFVP 493 (800)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHHhh
Confidence 455556667777767777754221 001100112566778887777666666553
Done!