Query 034893
Match_columns 80
No_of_seqs 100 out of 129
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 76.5 7.6 0.00026 21.7 4.9 35 45-79 7-41 (44)
2 2ks1_B Epidermal growth factor 74.5 3.4 0.00012 23.1 3.1 36 45-80 8-43 (44)
3 2k9j_B Integrin beta-3; transm 55.3 24 0.00081 19.3 4.6 34 44-77 6-41 (43)
4 2jwa_A Receptor tyrosine-prote 48.2 34 0.0012 19.0 4.3 22 57-78 20-41 (44)
5 2knc_B Integrin beta-3; transm 41.9 37 0.0013 20.6 3.9 35 43-77 6-42 (79)
6 1v54_M VIIIB, IX, cytochrome C 33.6 42 0.0014 18.8 2.9 24 1-27 10-33 (46)
7 1u19_A Rhodopsin; G protein-co 27.3 1.2E+02 0.0042 20.1 4.9 23 56-78 46-69 (349)
8 2rdd_B UPF0092 membrane protei 25.7 26 0.0009 18.2 1.0 11 69-79 17-27 (37)
9 1s7q_A H-2KB, H-2 class I hist 25.0 15 0.00052 27.1 0.0 12 63-74 298-309 (348)
10 2qjy_A Cytochrome B; cytochrom 21.6 1.7E+02 0.0059 23.0 5.4 26 5-37 328-353 (445)
11 2y69_M Cytochrome C oxidase po 21.5 85 0.0029 19.0 2.9 24 1-27 34-57 (70)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=76.47 E-value=7.6 Score=21.73 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 034893 45 PQEYAIIIPVFAGVVLLCFLCIFIGFVILKSKKKK 79 (80)
Q Consensus 45 pr~yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~ 79 (80)
|+.-+|..=++-++.++..++..+.+.+.+.++|+
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45566666666667777666655555555544443
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=74.53 E-value=3.4 Score=23.12 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 034893 45 PQEYAIIIPVFAGVVLLCFLCIFIGFVILKSKKKKA 80 (80)
Q Consensus 45 pr~yAi~lP~~lll~~~~~vg~Fig~vlik~~~k~~ 80 (80)
|+.-+|..=++-++.++..++..+.+.+.+.++|||
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 555566666666677777776555555555555443
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=55.31 E-value=24 Score=19.26 Aligned_cols=34 Identities=18% Similarity=0.366 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHH--HHHHHHHHHHHHHHhccc
Q 034893 44 LPQEYAIIIPVFAGVV--LLCFLCIFIGFVILKSKK 77 (80)
Q Consensus 44 ~pr~yAi~lP~~lll~--~~~~vg~Fig~vlik~~~ 77 (80)
||.-+||.+-++.+++ |+..+..+=-.+.++++|
T Consensus 6 ~~n~~~Iv~gvi~~ivliGl~lLliwk~~~~i~Drr 41 (43)
T 2k9j_B 6 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRK 41 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEeehHHHHHHHHHHHHHHHHHHHHHHHheehhh
Confidence 5677888887776554 444444444556666655
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.19 E-value=34 Score=19.02 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 034893 57 GVVLLCFLCIFIGFVILKSKKK 78 (80)
Q Consensus 57 ll~~~~~vg~Fig~vlik~~~k 78 (80)
+++++..++.-++..+.+.++|
T Consensus 20 Gvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhheehhhhh
Confidence 4444444444444444444443
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.91 E-value=37 Score=20.58 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=20.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHH--HHHHHHHHhccc
Q 034893 43 FLPQEYAIIIPVFAGVVLLCFLC--IFIGFVILKSKK 77 (80)
Q Consensus 43 F~pr~yAi~lP~~lll~~~~~vg--~Fig~vlik~~~ 77 (80)
-+|.-++|.+.++.++++++++. .+--.++++++|
T Consensus 6 ~~~n~~~Iv~gvi~gilliGllllliwk~~~~i~Drr 42 (79)
T 2knc_B 6 KGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRK 42 (79)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887766555443 333344554443
No 6
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=33.57 E-value=42 Score=18.85 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 1 MELADRVVGFLLSFISLSIFTYYTFWV 27 (80)
Q Consensus 1 m~~~D~~vG~~~L~~~~~~F~YYt~Wv 27 (80)
++..|+++|..+.+++..+= ..|+
T Consensus 10 ~s~~E~aigl~v~f~~~L~P---agWV 33 (46)
T 1v54_M 10 TSPKEQAIGLSVTFLSFLLP---AGWV 33 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred CCHHHHHHHHHHHHHHHHhh---HHHH
Confidence 36789999998887665442 3555
No 7
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=27.28 E-value=1.2e+02 Score=20.05 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH-HHHHhcccc
Q 034893 56 AGVVLLCFLCIFIG-FVILKSKKK 78 (80)
Q Consensus 56 lll~~~~~vg~Fig-~vlik~~~k 78 (80)
..+..++.+|-.+- .+..+++++
T Consensus 46 ~~i~~~gi~gN~lvi~~i~~~~~~ 69 (349)
T 1u19_A 46 FLLIMLGFPINFLTLYVTVQHKKL 69 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhHHheEeehhhhhhh
Confidence 34444444554433 344454443
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=25.68 E-value=26 Score=18.23 Aligned_cols=11 Identities=36% Similarity=0.745 Sum_probs=7.3
Q ss_pred HHHHHhccccc
Q 034893 69 GFVILKSKKKK 79 (80)
Q Consensus 69 g~vlik~~~k~ 79 (80)
-..+++.+||+
T Consensus 17 YFl~iRPQ~Kr 27 (37)
T 2rdd_B 17 YFMILRPQQKR 27 (37)
T ss_dssp HHHTHHHHHHH
T ss_pred HHHHhhhHHHH
Confidence 35677877764
No 9
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=25.02 E-value=15 Score=27.08 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh
Q 034893 63 FLCIFIGFVILK 74 (80)
Q Consensus 63 ~vg~Fig~vlik 74 (80)
++|+.+|++++|
T Consensus 298 ~~~~~~~~~~~~ 309 (348)
T 1s7q_A 298 VTGAVVAFVMKM 309 (348)
T ss_dssp ------------
T ss_pred hheeEEEEEEEE
Confidence 456677888888
No 10
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=21.58 E-value=1.7e+02 Score=22.95 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 034893 5 DRVVGFLLSFISLSIFTYYTFWVIILPFVDTDH 37 (80)
Q Consensus 5 D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~ 37 (80)
||+-|.+.+..+..+ .+++||+|.+.
T Consensus 328 nKlgGVial~~sili-------L~~lP~ld~s~ 353 (445)
T 2qjy_A 328 AKFFGVLAMFGAILV-------MALVPWLDTSP 353 (445)
T ss_dssp HHHHHHHHHHHHHHH-------HHTHHHHCCCS
T ss_pred hhhHHHHHHHHHHHH-------HHHhhhhcccc
Confidence 888776655544443 23789998654
No 11
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.54 E-value=85 Score=19.04 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 034893 1 MELADRVVGFLLSFISLSIFTYYTFWV 27 (80)
Q Consensus 1 m~~~D~~vG~~~L~~~~~~F~YYt~Wv 27 (80)
++..|+++|..+.+++..+= ..||
T Consensus 34 ~s~~E~aigltv~f~~~L~P---agWV 57 (70)
T 2y69_M 34 TSPKEQAIGLSVTFLSFLLP---AGWV 57 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred cCHHHHHHHHHHHHHHHHhh---HHHH
Confidence 36789999998887665442 3555
Done!