Query 034893
Match_columns 80
No_of_seqs 100 out of 129
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 12:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034893.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034893hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 57.0 9.7 0.00071 24.1 4.9 42 36-77 25-67 (348)
2 d1ppjc1 f.32.1.1 (C:261-379) M 43.4 13 0.00092 22.7 3.6 28 4-38 25-52 (119)
3 d3cx5c1 f.32.1.1 (C:262-385) M 41.6 17 0.0012 22.1 4.0 28 4-38 25-52 (124)
4 d1q90d_ f.32.1.1 (D:) Subunit 37.4 31 0.0023 21.8 5.0 30 4-40 89-118 (156)
5 d2onkc1 f.58.1.1 (C:1-252) Mol 35.9 29 0.0021 21.7 4.6 64 13-76 12-80 (252)
6 d1q90m_ f.23.25.1 (M:) PetM su 34.6 23 0.0017 17.5 3.1 21 55-75 9-29 (34)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 26.1 46 0.0033 18.6 3.9 27 43-69 61-87 (103)
8 d1v54m_ f.23.7.1 (M:) Mitochon 17.5 58 0.0042 16.8 2.8 18 2-19 11-28 (43)
9 d1xrda1 f.3.1.1 (A:1-52) Light 15.2 58 0.0042 17.4 2.5 27 37-63 2-28 (52)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 13.5 1.1E+02 0.0078 17.0 3.6 17 63-79 42-58 (100)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=56.99 E-value=9.7 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCceeeccCChhHHHHHHHHHHHHHHHHHHHHHH-HHHHhccc
Q 034893 36 DHFIHQYFLPQEYAIIIPVFAGVVLLCFLCIFIG-FVILKSKK 77 (80)
Q Consensus 36 d~~i~~~F~pr~yAi~lP~~lll~~~~~vg~Fig-~vlik~~~ 77 (80)
|++-+.+=+|-+|++..-...++..++++|=.+- .+..+++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~ 67 (348)
T d1u19a_ 25 EAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKK 67 (348)
T ss_dssp TSCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCC
Confidence 4444445566678776666665666666665554 44445444
No 2
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=43.41 E-value=13 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHF 38 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~ 38 (80)
.||+-|.+.++.|.+++ .++|+.|....
T Consensus 25 pnK~gGvl~m~~si~il-------~~lP~l~~~~~ 52 (119)
T d1ppjc1 25 PNKLGGVLALAFSILIL-------ALIPLLHTSKQ 52 (119)
T ss_dssp SSHHHHHHHHHHHHHGG-------GTHHHHCCCSS
T ss_pred CchhHHHHHHHHHHHHH-------HHHHHHhcccC
Confidence 57888888887776553 38899987654
No 3
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.59 E-value=17 Score=22.08 Aligned_cols=28 Identities=25% Similarity=0.700 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHF 38 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~ 38 (80)
.||+.|.+.++.|..++ .++|+.|..+.
T Consensus 25 P~k~~Gvl~~~~si~il-------~~lP~l~~s~~ 52 (124)
T d3cx5c1 25 PDKLLGVITMFAAILVL-------LVLPFTDRSVV 52 (124)
T ss_dssp SSHHHHHHHHHHHHHGG-------GGHHHHCCCSS
T ss_pred CcchhhhHHHHHHHHHH-------HHHHHHhhhhh
Confidence 57888888887777543 48999997764
No 4
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=37.43 E-value=31 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcee
Q 034893 4 ADRVVGFLLSFISLSIFTYYTFWVIILPFVDTDHFIH 40 (80)
Q Consensus 4 ~D~~vG~~~L~~~~~~F~YYt~Wv~vlPFvd~d~~i~ 40 (80)
-||+.|..+.+.+... .+++||+|..+..+
T Consensus 89 P~kl~GVi~~~~~i~~-------L~~lP~l~~~~~~~ 118 (156)
T d1q90d_ 89 PNKLLGVLLMAAVPAG-------LITVPFIESINKFQ 118 (156)
T ss_dssp SCHHHHHHHHHHHHHH-------HTTTTTTTCSCCCC
T ss_pred ChHHHHHHHHHHHHHH-------HHHHHHHccccccc
Confidence 3677777666555443 35889999766544
No 5
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.95 E-value=29 Score=21.66 Aligned_cols=64 Identities=8% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHH-hcccccCCCceeeccCChhHHHHHHHHHH----HHHHHHHHHHHHHHHHhcc
Q 034893 13 SFISLSIFTYYTFWVI-ILPFVDTDHFIHQYFLPQEYAIIIPVFAG----VVLLCFLCIFIGFVILKSK 76 (80)
Q Consensus 13 L~~~~~~F~YYt~Wv~-vlPFvd~d~~i~~~F~pr~yAi~lP~~ll----l~~~~~vg~Fig~vlik~~ 76 (80)
+.....+|.++-++.. ...|++.||..+.+.-|+-|.-..=.+.. .+....+|..+++.+-+.+
T Consensus 12 ~~~~~~~f~~~p~~~~~~~s~~~~~n~~~~~~~~~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~~ 80 (252)
T d2onkc1 12 LSSIILLFVLLPVAATVTLQLFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKS 80 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677766554 44667777766656656655443333322 2233345666666665443
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=34.62 E-value=23 Score=17.49 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 034893 55 FAGVVLLCFLCIFIGFVILKS 75 (80)
Q Consensus 55 ~lll~~~~~vg~Fig~vlik~ 75 (80)
.+-.+|.+.+|--+|+++++-
T Consensus 9 a~tmig~tl~glaigfvllrv 29 (34)
T d1q90m_ 9 ALTMVGMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhheee
Confidence 456788999999999999874
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=26.10 E-value=46 Score=18.61 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=14.7
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHH
Q 034893 43 FLPQEYAIIIPVFAGVVLLCFLCIFIG 69 (80)
Q Consensus 43 F~pr~yAi~lP~~lll~~~~~vg~Fig 69 (80)
-|-...+=.+-.+..+.|+...+.+++
T Consensus 61 ~P~t~~gr~~~~~~~~~Gi~~~~~~~~ 87 (103)
T d1r3jc_ 61 YPVTLWGRCVAVVVMVAGITSFGLVTA 87 (103)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455545555566666666555554
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.46 E-value=58 Score=16.77 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=13.5
Q ss_pred chhHHHHHHHHHHHHHHH
Q 034893 2 ELADRVVGFLLSFISLSI 19 (80)
Q Consensus 2 ~~~D~~vG~~~L~~~~~~ 19 (80)
+..|+++|+.+.+++...
T Consensus 11 s~~E~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 11 SPKEQAIGLSVTFLSFLL 28 (43)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc
Confidence 467899999888766543
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=15.23 E-value=58 Score=17.42 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=18.7
Q ss_pred CceeeccCChhHHHHHHHHHHHHHHHH
Q 034893 37 HFIHQYFLPQEYAIIIPVFAGVVLLCF 63 (80)
Q Consensus 37 ~~i~~~F~pr~yAi~lP~~lll~~~~~ 63 (80)
+.+...|-||.--+-+-+++.++.+.+
T Consensus 2 ~kiW~~fDPRr~lva~~~fL~~LAl~I 28 (52)
T d1xrda1 2 WRIWQLFDPRQALVGLATFLFVLALLI 28 (52)
T ss_dssp GGGGGTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeEecHHHHHHHHHHHHHHHHHHH
Confidence 346678999998777776666555543
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.49 E-value=1.1e+02 Score=17.04 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhccccc
Q 034893 63 FLCIFIGFVILKSKKKK 79 (80)
Q Consensus 63 ~vg~Fig~vlik~~~k~ 79 (80)
+|...+.+.++|.++||
T Consensus 42 ~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 42 FVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHhhhhhccC
Confidence 34455556666665553
Done!