BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034894
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O42921|PT191_SCHPO Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC16A3.16 PE=3 SV=1
Length = 85
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQAC 60
M +SCK + +L CL SDC+ V+K+S REC K +P EC L E Y CKR Q
Sbjct: 1 MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKNKDE-LPEECKNLIEAYGECKR-QML 58
Query: 61 SLFSSFHI 68
+ + I
Sbjct: 59 DMTKRYRI 66
>sp|Q5RFJ0|COA5_PONAB Cytochrome c oxidase assembly factor 5 OS=Pongo abelii GN=Coa5
PE=3 SV=1
Length = 74
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
+C GL +L CL ESDCV E +S R+C E C L+ +F CKR
Sbjct: 13 ACGGLKEDLGACLLESDCVVQEGKSPRQCLKE------GYCNSLKYAFFECKR 59
>sp|Q02772|PT191_YEAST Mitochondrial protein PET191 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PET191 PE=1 SV=1
Length = 108
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAG--EKSPCIPSECVGLRETYFNCKRG 57
M SCK + CL S CV +E+ + +EC E + +P C+ + + +CKRG
Sbjct: 1 MVASCKDQKKAVAICLQRSPCVMIERHNPQECLDNPELNKDLPELCIAQMKAFLDCKRG 59
>sp|A1L3N6|COA5_XENLA Cytochrome c oxidase assembly factor 5 OS=Xenopus laevis GN=coa5
PE=3 SV=1
Length = 75
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 5 CKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
C G+ +L CL +SDCV E +S +EC E C L+ T+F CKR
Sbjct: 15 CGGVKEDLKNCLLQSDCVLQEGKSPKECLKE------GYCKALQVTFFECKR 60
>sp|Q86WW8|COA5_HUMAN Cytochrome c oxidase assembly factor 5 OS=Homo sapiens GN=COA5
PE=1 SV=1
Length = 74
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
+C GL +L CL +SDCV E +S R+C E C L+ +F CKR
Sbjct: 13 ACAGLKEDLGACLLQSDCVVQEGKSPRQCLKE------GYCNSLKYAFFECKR 59
>sp|Q3ZCK8|COA5_BOVIN Cytochrome c oxidase assembly factor 5 OS=Bos taurus GN=COA5 PE=3
SV=1
Length = 74
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
+C G+ +L CL +SDCV E +S R+C E C L+ ++F CKR
Sbjct: 13 ACAGVKEDLGLCLLQSDCVLKEGKSPRQCLKE------GNCKALKYSFFECKR 59
>sp|Q28CA1|COA5_XENTR Cytochrome c oxidase assembly factor 5 OS=Xenopus tropicalis
GN=coa5 PE=3 SV=1
Length = 75
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 5 CKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
C G+ +L CL ++DCV E +S +EC E C L+ T+F CKR
Sbjct: 15 CAGVKEDLKSCLLQTDCVLQEGKSPKECLKE------GYCKALQVTFFECKR 60
>sp|Q99M07|COA5_MOUSE Cytochrome c oxidase assembly factor 5 OS=Mus musculus GN=Coa5
PE=2 SV=1
Length = 74
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKR 56
+C G+ +L CL +S CV E +S R+C E C L+ ++F CKR
Sbjct: 13 ACAGVKEDLGACLLQSACVLQEGKSPRQCLKE------GNCRALQYSFFECKR 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,597,556
Number of Sequences: 539616
Number of extensions: 814241
Number of successful extensions: 1892
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1881
Number of HSP's gapped (non-prelim): 11
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)