Query 034894
Match_columns 80
No_of_seqs 110 out of 132
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hp8_A HU-P8; leukemia, cystei 73.0 1.8 6.2E-05 26.6 1.8 42 3-62 5-46 (68)
2 1ei0_A P8MTCP1; helix-turn-hel 56.5 14 0.00047 19.8 3.2 27 29-56 10-36 (38)
3 2lql_A Coiled-coil-helix-coile 35.1 6.8 0.00023 25.5 -0.4 54 2-56 12-73 (113)
4 1x6i_A Hypothetical protein YG 15.5 59 0.002 20.1 1.2 15 47-61 9-23 (91)
5 1puz_A Conserved hypothetical 15.0 54 0.0018 19.9 0.9 13 48-61 11-23 (82)
6 2jm6_A NOXA; apoptosis, BCL-2, 13.5 66 0.0022 16.4 0.8 12 38-49 2-13 (27)
7 2jr5_A UPF0350 protein VC_2471 13.0 57 0.0019 20.3 0.6 13 48-61 9-21 (94)
8 2lqt_A Coiled-coil-helix-coile 12.1 68 0.0023 20.3 0.8 26 31-57 25-50 (85)
9 2pa8_L DNA-directed RNA polyme 9.9 32 0.0011 21.3 -1.4 28 26-53 62-89 (92)
10 1u96_A Cytochrome C oxidase co 9.2 1.3E+02 0.0046 18.3 1.3 18 43-60 46-63 (69)
No 1
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=72.99 E-value=1.8 Score=26.57 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHhcCccccccCCChhHHhCCCCCCCchhhHHHHhHHHhcccCcccCc
Q 034894 3 KSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQACSL 62 (80)
Q Consensus 3 ~SCk~lr~~L~~CL~~SdCv~~~~~tpkeCL~~~~~~lP~eC~~Lr~affeCKRgmlDmr 62 (80)
.+|+....++-.||.+ + ..-++.|+.+..++.+|++..++.|
T Consensus 5 dPC~~~AcaiQ~CL~~-----------------N-~yd~skCq~~id~L~eCc~~~~~~~ 46 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQA-----------------N-SYMESKCQAVIQELRKCCAQYPKGR 46 (68)
T ss_dssp CTTHHHHHHHHHHHHH-----------------T-TTCHHHHHHHHHHHHHHHTTSCGGG
T ss_pred CchHHHHHHHHHHHHH-----------------c-CCcHHHHHHHHHHHHHHHHHHccCC
Confidence 3666666666666543 2 2457899999999999999887543
No 2
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=56.50 E-value=14 Score=19.83 Aligned_cols=27 Identities=15% Similarity=0.481 Sum_probs=18.8
Q ss_pred hhHHhCCCCCCCchhhHHHHhHHHhccc
Q 034894 29 FRECAGEKSPCIPSECVGLRETYFNCKR 56 (80)
Q Consensus 29 pkeCL~~~~~~lP~eC~~Lr~affeCKR 56 (80)
+++||... ..-++.|+.+..++.+|+.
T Consensus 10 ~q~CL~~n-~~d~skCq~~id~l~~Cc~ 36 (38)
T 1ei0_A 10 IQKCLQAN-SYLESKCQAVIQELKKCAA 36 (38)
T ss_dssp HHHHHHHT-TTCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCcHHHHHHHHHHHHHHHh
Confidence 34455433 2457799999999999973
No 3
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=35.09 E-value=6.8 Score=25.53 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHHHhcC------ccccccCCChhHHhCCC--CCCCchhhHHHHhHHHhccc
Q 034894 2 SKSCKGLAMELVKCLSES------DCVKVEKRSFRECAGEK--SPCIPSECVGLRETYFNCKR 56 (80)
Q Consensus 2 ~~SCk~lr~~L~~CL~~S------dCv~~~~~tpkeCL~~~--~~~lP~eC~~Lr~affeCKR 56 (80)
++-|...-++...|..+. +|... |+....|..+. ..+|-..|..-..+|.+|-+
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~e-g~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~ 73 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYL-KMSIAQCTSSHPIIRQIRQACAQPFEAFEECLR 73 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHH-HHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 456888888888887532 46544 56777777652 45677788888888888854
No 4
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=15.47 E-value=59 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.3
Q ss_pred HHhHHHhcccCcccC
Q 034894 47 LRETYFNCKRGQACS 61 (80)
Q Consensus 47 Lr~affeCKRgmlDm 61 (80)
.++-.+.|+|||+-+
T Consensus 9 ~~RL~~rsrRGmlEl 23 (91)
T 1x6i_A 9 KARIHWACRRGMREL 23 (91)
T ss_dssp HHHHHHHTCCSSHHH
T ss_pred HHHHHHHHHcchHHH
Confidence 455667999999865
No 5
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1
Probab=15.00 E-value=54 Score=19.89 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=9.7
Q ss_pred HhHHHhcccCcccC
Q 034894 48 RETYFNCKRGQACS 61 (80)
Q Consensus 48 r~affeCKRgmlDm 61 (80)
|--| .|||||+-+
T Consensus 11 RL~~-~~rRGmlEl 23 (82)
T 1puz_A 11 KIRF-QTRRGLLEL 23 (82)
T ss_dssp HHHH-HSCCSCHHH
T ss_pred HHHH-HhhcchHHH
Confidence 4445 999999865
No 6
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=13.49 E-value=66 Score=16.40 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=8.7
Q ss_pred CCCchhhHHHHh
Q 034894 38 PCIPSECVGLRE 49 (80)
Q Consensus 38 ~~lP~eC~~Lr~ 49 (80)
.++-.||.++|+
T Consensus 2 ~~l~vecaqlr~ 13 (27)
T 2jm6_A 2 ADLKDECAQLRR 13 (27)
T ss_dssp TTHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 356678998875
No 7
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}
Probab=13.05 E-value=57 Score=20.35 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.4
Q ss_pred HhHHHhcccCcccC
Q 034894 48 RETYFNCKRGQACS 61 (80)
Q Consensus 48 r~affeCKRgmlDm 61 (80)
|--| .|+|||+-+
T Consensus 9 RL~~-~~rRGmlEl 21 (94)
T 2jr5_A 9 RIKW-ACRRGMLEL 21 (94)
T ss_dssp HHHH-HHCCSSHHH
T ss_pred HHHH-HhhcccHHH
Confidence 3445 999999764
No 8
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=12.11 E-value=68 Score=20.28 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=18.5
Q ss_pred HHhCCCCCCCchhhHHHHhHHHhcccC
Q 034894 31 ECAGEKSPCIPSECVGLRETYFNCKRG 57 (80)
Q Consensus 31 eCL~~~~~~lP~eC~~Lr~affeCKRg 57 (80)
.||..+..+ -+.|+....+|=+||..
T Consensus 25 kCL~~n~yD-r~~C~~yF~~Yk~CKk~ 50 (85)
T 2lqt_A 25 RCLDENNYD-RERCSTYFLRYKNCRRF 50 (85)
T ss_dssp HHHHHTTTC-TTTTHHHHHHHHHHHHH
T ss_pred HHHHHcCcc-HHHHHHHHHHHHHHHHH
Confidence 355554222 45899999999999864
No 9
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=9.89 E-value=32 Score=21.29 Aligned_cols=28 Identities=4% Similarity=-0.145 Sum_probs=23.0
Q ss_pred CCChhHHhCCCCCCCchhhHHHHhHHHh
Q 034894 26 KRSFRECAGEKSPCIPSECVGLRETYFN 53 (80)
Q Consensus 26 ~~tpkeCL~~~~~~lP~eC~~Lr~affe 53 (80)
+.||.+.|++...++-..|..+...|-+
T Consensus 62 ~~~p~~al~~a~~~l~~~~~~~~~~f~~ 89 (92)
T 2pa8_L 62 SITPKDALLKAIENIRGMTSHYIDEIKG 89 (92)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998777888899999888743
No 10
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=9.19 E-value=1.3e+02 Score=18.28 Aligned_cols=18 Identities=28% Similarity=0.672 Sum_probs=15.9
Q ss_pred hhHHHHhHHHhcccCccc
Q 034894 43 ECVGLRETYFNCKRGQAC 60 (80)
Q Consensus 43 eC~~Lr~affeCKRgmlD 60 (80)
+|..+-.+|-+|-|+.-.
T Consensus 46 ~C~~lIeahk~CMr~~GF 63 (69)
T 1u96_A 46 KCKEFIEKYKECMKGYGF 63 (69)
T ss_dssp GGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999988643
Done!