Query 034896
Match_columns 80
No_of_seqs 107 out of 445
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 4.1E-35 8.8E-40 231.3 7.7 80 1-80 549-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 3.9E-32 8.4E-37 211.8 6.5 80 1-80 514-593 (593)
3 PF02990 EMP70: Endomembrane p 99.6 2.3E-16 5.1E-21 123.5 2.7 38 1-38 484-521 (521)
4 PF08055 Trp_leader1: Tryptoph 67.3 2.2 4.8E-05 19.5 0.3 7 3-9 7-13 (18)
5 PF03302 VSP: Giardia variant- 35.8 12 0.00027 28.9 0.0 19 53-72 376-394 (397)
6 PF01102 Glycophorin_A: Glycop 33.8 75 0.0016 21.1 3.5 21 49-69 66-86 (122)
7 PF05060 MGAT2: N-acetylglucos 29.9 12 0.00026 29.1 -0.9 6 3-8 147-152 (356)
8 COG2902 NAD-specific glutamate 29.2 15 0.00032 33.6 -0.6 15 4-18 917-931 (1592)
9 KOG2791 N-acetylglucosaminyltr 27.0 17 0.00038 28.8 -0.5 7 2-8 232-238 (455)
10 PF08038 Tom7: TOM7 family; I 25.9 36 0.00078 18.6 0.8 13 35-47 17-29 (42)
11 PF08172 CASP_C: CASP C termin 22.8 1.4E+02 0.003 21.9 3.6 33 30-62 209-241 (248)
12 TIGR01894 cas_TM1795_cmr1 CRIS 22.8 15 0.00033 25.1 -1.3 9 3-11 29-37 (153)
13 TIGR03546 conserved hypothetic 21.1 2.8E+02 0.0061 18.9 4.7 32 42-73 104-135 (154)
14 COG5102 SFT2 Membrane protein 20.4 2.8E+02 0.006 20.0 4.6 48 14-64 77-124 (201)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-35 Score=231.29 Aligned_cols=80 Identities=38% Similarity=0.855 Sum_probs=79.6
Q ss_pred CCcccceeeeccCchhHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q 034896 1 MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE 80 (80)
Q Consensus 1 eny~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~~~~lyfgY~~l~s~~~~l~~G~iGfl~s~~Fv~~IY~~iK~d 80 (80)
||||||||||++||++|+|+|+||++|+++|++++|+++++||+|||++++++++++||||||++|+|||||||+++|+|
T Consensus 549 Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 549 EDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID 628 (628)
T ss_pred cccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-32 Score=211.79 Aligned_cols=80 Identities=48% Similarity=0.981 Sum_probs=79.6
Q ss_pred CCcccceeeeccCchhHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q 034896 1 MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFRASLLFVRHIYKSIKCE 80 (80)
Q Consensus 1 eny~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~~~~lyfgY~~l~s~~~~l~~G~iGfl~s~~Fv~~IY~~iK~d 80 (80)
||||||||||+++||+|+|+++||+||++.|++|.|+.|+..|||||+++|.++++|||+||+.++..||||||+|+|+|
T Consensus 514 EDyrW~WtSfls~~ST~~yvy~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 514 EDYRWWWTSFLSAGSTALYVYLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred ccceeeeeeeeccccceeehhhhHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=99.61 E-value=2.3e-16 Score=123.47 Aligned_cols=38 Identities=42% Similarity=0.990 Sum_probs=37.0
Q ss_pred CCcccceeeeccCchhHHHHHHHHHHHhhhcccccCch
Q 034896 1 MNWFERMRSFLCGGSTGVFIYAYCLYYYYARSDMSGFM 38 (80)
Q Consensus 1 eny~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~ 38 (80)
||||||||||++|||+|+|+|+||++|+++|++|+|++
T Consensus 484 Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 484 EDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred cccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 89999999999999999999999999999999999984
No 4
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=67.29 E-value=2.2 Score=19.47 Aligned_cols=7 Identities=0% Similarity=-0.557 Sum_probs=5.3
Q ss_pred cccceee
Q 034896 3 WFERMRS 9 (80)
Q Consensus 3 y~WwWrS 9 (80)
-+|||..
T Consensus 7 ~nwwwta 13 (18)
T PF08055_consen 7 QNWWWTA 13 (18)
T ss_pred cceeeec
Confidence 3799975
No 5
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=35.78 E-value=12 Score=28.92 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.0
Q ss_pred HHHHhhchhHHHHHHHHHHH
Q 034896 53 GFFLMLGTVGFRASLLFVRH 72 (80)
Q Consensus 53 ~~~l~~G~iGfl~s~~Fv~~ 72 (80)
++-++-|.|||| +.|||.|
T Consensus 376 vvvvVgglvGfL-cWwf~cr 394 (397)
T PF03302_consen 376 VVVVVGGLVGFL-CWWFICR 394 (397)
T ss_pred hHHHHHHHHHHH-hhheeec
Confidence 355777899999 9999865
No 6
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.80 E-value=75 Score=21.07 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=15.5
Q ss_pred HHHHHHHHhhchhHHHHHHHH
Q 034896 49 CVCYGFFLMLGTVGFRASLLF 69 (80)
Q Consensus 49 l~s~~~~l~~G~iGfl~s~~F 69 (80)
++-.++++|+|-||-+.-..|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHH
Confidence 366678889999998775444
No 7
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=29.89 E-value=12 Score=29.10 Aligned_cols=6 Identities=0% Similarity=-0.279 Sum_probs=5.1
Q ss_pred ccccee
Q 034896 3 WFERMR 8 (80)
Q Consensus 3 y~WwWr 8 (80)
|||||+
T Consensus 147 HHWWWk 152 (356)
T PF05060_consen 147 HHWWWK 152 (356)
T ss_pred HHHHHH
Confidence 789997
No 8
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=29.16 E-value=15 Score=33.64 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.6
Q ss_pred ccceeeeccCchhHH
Q 034896 4 FERMRSFLCGGSTGV 18 (80)
Q Consensus 4 ~WwWrSF~~~gs~~~ 18 (80)
-|||.+|.+|||.|.
T Consensus 917 fwl~DAFaSGgS~Gy 931 (1592)
T COG2902 917 FWLGDAFASGGSAGY 931 (1592)
T ss_pred CChhhhhhcCCCCCC
Confidence 399999999999653
No 9
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=26.97 E-value=17 Score=28.82 Aligned_cols=7 Identities=0% Similarity=-0.201 Sum_probs=5.3
Q ss_pred Cccccee
Q 034896 2 NWFERMR 8 (80)
Q Consensus 2 ny~WwWr 8 (80)
.|||||+
T Consensus 232 KHHWWWk 238 (455)
T KOG2791|consen 232 KHHWWWK 238 (455)
T ss_pred hhhhhHh
Confidence 3788887
No 10
>PF08038 Tom7: TOM7 family; InterPro: IPR012621 This family consists of TOM7 family of mitochondrial import receptors. TOM7 forms part of the translocase of the outer mitochondrial membrane (TOM) complex and it appears to function as a modulator of the dynamics of the mitochondrial protein transport machinery by promoting the dissociation of subunits of the outer membrane translocase [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=25.94 E-value=36 Score=18.62 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=11.3
Q ss_pred cCchhhHHHHHHH
Q 034896 35 SGFMQTSFFFGYM 47 (80)
Q Consensus 35 ~g~~~~~lyfgY~ 47 (80)
-|+++.++|+|+.
T Consensus 17 yGfIP~IlylG~~ 29 (42)
T PF08038_consen 17 YGFIPLILYLGFR 29 (42)
T ss_pred eeehHHHHHHhhc
Confidence 5899999999985
No 11
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.83 E-value=1.4e+02 Score=21.95 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=23.5
Q ss_pred hcccccCchhhHHHHHHHHHHHHHHHHhhchhH
Q 034896 30 ARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVG 62 (80)
Q Consensus 30 ~~~~~~g~~~~~lyfgY~~l~s~~~~l~~G~iG 62 (80)
.++=+..-.+-.+++.|++.+.++++++.=-++
T Consensus 209 ~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~ 241 (248)
T PF08172_consen 209 TRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMS 241 (248)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555667899999999999998764433
No 12
>TIGR01894 cas_TM1795_cmr1 CRISPR-associated RAMP protein, Cmr1 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.
Probab=22.81 E-value=15 Score=25.10 Aligned_cols=9 Identities=11% Similarity=0.092 Sum_probs=6.8
Q ss_pred cccceeeec
Q 034896 3 WFERMRSFL 11 (80)
Q Consensus 3 y~WwWrSF~ 11 (80)
.|||||...
T Consensus 29 lR~W~Ra~~ 37 (153)
T TIGR01894 29 LRWWFRALI 37 (153)
T ss_pred HHHHHHHHh
Confidence 478888775
No 13
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=21.14 E-value=2.8e+02 Score=18.92 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q 034896 42 FFFGYMACVCYGFFLMLGTVGFRASLLFVRHI 73 (80)
Q Consensus 42 lyfgY~~l~s~~~~l~~G~iGfl~s~~Fv~~I 73 (80)
-+.-...+-++++++.+|.+.+..|...|++-
T Consensus 104 ~f~~tl~~Gg~l~Gli~~~~~Y~ls~~lI~~Y 135 (154)
T TIGR03546 104 RFNNTIVMGSFVVGLILLPPAFAISKVIIAKY 135 (154)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577899999999999999999998664
No 14
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=20.39 E-value=2.8e+02 Score=19.97 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHhhhcccccCchhhHHHHHHHHHHHHHHHHhhchhHHH
Q 034896 14 GSTGVFIYAYCLYYYYARSDMSGFMQTSFFFGYMACVCYGFFLMLGTVGFR 64 (80)
Q Consensus 14 gs~~~y~f~Ysi~y~~~~~~~~g~~~~~lyfgY~~l~s~~~~l~~G~iGfl 64 (80)
|+.+.+-++|..+=. -+++-+++. +++=.=++++.+++++..|...++
T Consensus 77 Ga~ac~a~~~fmfpV-l~lkPrkFi--LlwTmgslLfvl~Fg~l~Gf~ayl 124 (201)
T COG5102 77 GAGACSAFLYFMFPV-LRLKPRKFI--LLWTMGSLLFVLMFGFLLGFRAYL 124 (201)
T ss_pred hhHHHHHHHHHHHHH-HhcCcccee--eehhHHHHHHHHHHHHHHhHHHHH
Confidence 566777777766543 357778884 777777888999999999988775
Done!