Query 034896
Match_columns 80
No_of_seqs 107 out of 445
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rh5_B Preprotein translocase 28.0 93 0.0032 18.0 4.0 22 48-69 38-59 (74)
2 2ww9_B Protein transport prote 27.5 1E+02 0.0034 18.3 4.0 23 48-70 51-73 (80)
3 3mp7_B Preprotein translocase 22.4 1.1E+02 0.0038 17.0 4.0 23 48-70 34-56 (61)
4 2wwb_B SEC61gamma, protein tra 14.2 1.2E+02 0.0041 17.3 2.2 22 48-69 37-58 (68)
5 3fqi_A Protein DOM3Z, DOM-3 ho 13.8 23 0.00078 26.8 -1.3 13 4-16 296-308 (417)
6 1afo_A Glycophorin A; integral 11.5 2E+02 0.0068 14.9 3.5 20 50-69 13-32 (40)
7 4ekf_A Adenain; alpha and beta 10.6 1.3E+02 0.0045 20.8 1.9 19 12-30 118-138 (204)
8 3fqg_A Protein DIN1; hydrolase 7.3 44 0.0015 24.6 -1.7 12 4-15 259-270 (360)
9 2f95_B Sensory rhodopsin II tr 6.6 2.9E+02 0.0099 16.0 2.1 16 62-77 72-87 (163)
10 3b9w_A Ammonium transporter fa 6.4 4.3E+02 0.015 19.7 3.3 31 50-80 261-291 (407)
No 1
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=27.98 E-value=93 Score=18.05 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhchhHHHHHHHH
Q 034896 48 ACVCYGFFLMLGTVGFRASLLF 69 (80)
Q Consensus 48 ~l~s~~~~l~~G~iGfl~s~~F 69 (80)
+-++.+-++..|.|||..-+.+
T Consensus 38 ak~~~iG~~imG~IGfiIkli~ 59 (74)
T 1rh5_B 38 AKVTALGISLLGIIGYIIHVPA 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666778899999877665
No 2
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=27.46 E-value=1e+02 Score=18.25 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhchhHHHHHHHHH
Q 034896 48 ACVCYGFFLMLGTVGFRASLLFV 70 (80)
Q Consensus 48 ~l~s~~~~l~~G~iGfl~s~~Fv 70 (80)
+.++.+-++..|.|||+.-+.++
T Consensus 51 ak~t~iG~~imG~IGfiIkLI~i 73 (80)
T 2ww9_B 51 VKAVGIGFIAVGIIGYAIKLIHI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667888999998766653
No 3
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=22.39 E-value=1.1e+02 Score=17.00 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhchhHHHHHHHHH
Q 034896 48 ACVCYGFFLMLGTVGFRASLLFV 70 (80)
Q Consensus 48 ~l~s~~~~l~~G~iGfl~s~~Fv 70 (80)
+-++.+-++..|.|||+--+.++
T Consensus 34 ak~~~iG~~i~G~iGf~Ikli~~ 56 (61)
T 3mp7_B 34 AKITGLGIILIGLIGMLIRIVGI 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667788999998766553
No 4
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=14.18 E-value=1.2e+02 Score=17.29 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhchhHHHHHHHH
Q 034896 48 ACVCYGFFLMLGTVGFRASLLF 69 (80)
Q Consensus 48 ~l~s~~~~l~~G~iGfl~s~~F 69 (80)
+.++.+-++..|.|||..-+.+
T Consensus 37 ak~~~iG~~i~G~IGf~IklI~ 58 (68)
T 2wwb_B 37 AMATAIGFAIMGFIGFFVKLIH 58 (68)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556678899999755544
No 5
>3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET: EPE; 2.01A {Mus musculus} PDB: 3fqj_A*
Probab=13.84 E-value=23 Score=26.79 Aligned_cols=13 Identities=31% Similarity=0.133 Sum_probs=10.1
Q ss_pred ccceeeeccCchh
Q 034896 4 FERMRSFLCGGST 16 (80)
Q Consensus 4 ~WwWrSF~~~gs~ 16 (80)
+|||.||+.|-..
T Consensus 296 k~W~QSFL~GVp~ 308 (417)
T 3fqi_A 296 KWWAQSFLPGVPH 308 (417)
T ss_dssp HHHHHHHTTTCCE
T ss_pred HHHHHHhhcCCCE
Confidence 6899999887643
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=11.48 E-value=2e+02 Score=14.90 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=14.1
Q ss_pred HHHHHHHhhchhHHHHHHHH
Q 034896 50 VCYGFFLMLGTVGFRASLLF 69 (80)
Q Consensus 50 ~s~~~~l~~G~iGfl~s~~F 69 (80)
+...+++|+|-||-+...-+
T Consensus 13 ~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55678889998887654443
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=10.57 E-value=1.3e+02 Score=20.82 Aligned_cols=19 Identities=11% Similarity=0.354 Sum_probs=15.2
Q ss_pred cCchhHHH--HHHHHHHHhhh
Q 034896 12 CGGSTGVF--IYAYCLYYYYA 30 (80)
Q Consensus 12 ~~gs~~~y--~f~Ysi~y~~~ 30 (80)
.+|++|+| +|+||...+=.
T Consensus 118 ~SaACGLFC~lFL~aF~~~p~ 138 (204)
T 4ekf_A 118 NSAAAGLFCCMFLHAFANWPQ 138 (204)
T ss_dssp TCCCHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHHhCCC
Confidence 47899998 89999887643
No 8
>3fqg_A Protein DIN1; hydrolase, mRNA processing, nucleus, phosphoprotein, rRNA processing, transcription, transcription regulation; 2.00A {Schizosaccharomyces pombe} PDB: 3fqd_B
Probab=7.31 E-value=44 Score=24.59 Aligned_cols=12 Identities=33% Similarity=0.207 Sum_probs=8.4
Q ss_pred ccceeeeccCch
Q 034896 4 FERMRSFLCGGS 15 (80)
Q Consensus 4 ~WwWrSF~~~gs 15 (80)
+||+.||+.|-.
T Consensus 259 k~W~QSFL~Gv~ 270 (360)
T 3fqg_A 259 KYWAQSFLLGIG 270 (360)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHhccCCC
Confidence 577888877654
No 9
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=6.60 E-value=2.9e+02 Score=16.02 Aligned_cols=16 Identities=6% Similarity=-0.272 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHhhcc
Q 034896 62 GFRASLLFVRHIYKSI 77 (80)
Q Consensus 62 Gfl~s~~Fv~~IY~~i 77 (80)
+.+.++++.|+|-+.+
T Consensus 72 ~~~~~~~~~~~i~~pl 87 (163)
T 2f95_B 72 LGLVAATLGGDTAASL 87 (163)
T ss_dssp HHHHC-----------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555666665544
No 10
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=6.40 E-value=4.3e+02 Score=19.74 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=16.4
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHhhcccCC
Q 034896 50 VCYGFFLMLGTVGFRASLLFVRHIYKSIKCE 80 (80)
Q Consensus 50 ~s~~~~l~~G~iGfl~s~~Fv~~IY~~iK~d 80 (80)
-++++++..|.+...+...+-+++=+..|+|
T Consensus 261 ~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iD 291 (407)
T 3b9w_A 261 GAFVIGLLGGAISVVGFVFIQPMLESKAKTI 291 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4555666666666554443333333446666
Done!