Query 034896
Match_columns 80
No_of_seqs 107 out of 445
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 12:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034896.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034896hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eysh2 f.23.10.1 (H:7-43) Pho 21.6 31 0.0023 16.5 2.1 20 17-36 12-31 (37)
2 d2erla_ a.10.1.1 (A:) ER-1 {Eu 17.4 30 0.0022 16.5 1.4 9 16-24 26-34 (40)
3 d1rh5b_ f.23.28.1 (B:) Preprot 16.7 73 0.0053 16.4 4.0 22 48-69 27-48 (56)
4 d1nlna_ d.3.1.7 (A:) Human ade 11.1 58 0.0042 21.0 1.9 19 12-30 117-137 (203)
5 d1h5oa_ g.9.1.2 (A:) Crotamine 8.6 60 0.0044 15.6 0.9 10 1-10 28-37 (42)
6 d1ugva_ b.34.2.1 (A:) Olygophr 6.3 78 0.0057 16.1 0.8 9 2-10 42-50 (72)
7 d1ujra_ d.289.1.1 (A:) RING fi 6.0 41 0.003 18.9 -0.6 8 2-9 29-36 (110)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 5.9 1.4E+02 0.01 13.9 1.5 10 61-70 6-15 (36)
9 d1opka1 b.34.2.1 (A:83-139) Ab 5.9 85 0.0062 15.2 0.7 9 3-11 33-41 (57)
10 d1v54b1 b.6.1.2 (B:91-227) Cyt 5.2 78 0.0057 18.5 0.3 6 3-8 12-17 (137)
No 1
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=21.56 E-value=31 Score=16.51 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhcccccC
Q 034896 17 GVFIYAYCLYYYYARSDMSG 36 (80)
Q Consensus 17 ~~y~f~Ysi~y~~~~~~~~g 36 (80)
++++|.-.+.+++++-+++.
T Consensus 12 ~Fw~FFagLi~YL~rE~~RE 31 (37)
T d1eysh2 12 AFWLFFFGLIIYLRREDKRE 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 45678888888888888764
No 2
>d2erla_ a.10.1.1 (A:) ER-1 {Euplotes raikovi [TaxId: 5938]}
Probab=17.37 E-value=30 Score=16.48 Aligned_cols=9 Identities=44% Similarity=1.169 Sum_probs=7.3
Q ss_pred hHHHHHHHH
Q 034896 16 TGVFIYAYC 24 (80)
Q Consensus 16 ~~~y~f~Ys 24 (80)
+|.||.+||
T Consensus 26 tgcymyiys 34 (40)
T d2erla_ 26 TGCYMYIYS 34 (40)
T ss_dssp HHHHHHHHH
T ss_pred cceEEEeec
Confidence 678888887
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=16.72 E-value=73 Score=16.35 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhchhHHHHHHHH
Q 034896 48 ACVCYGFFLMLGTVGFRASLLF 69 (80)
Q Consensus 48 ~l~s~~~~l~~G~iGfl~s~~F 69 (80)
..++.+=++..|.|||+.-..+
T Consensus 27 a~v~~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566688899999876554
No 4
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=11.09 E-value=58 Score=20.95 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=15.2
Q ss_pred cCchhHHH--HHHHHHHHhhh
Q 034896 12 CGGSTGVF--IYAYCLYYYYA 30 (80)
Q Consensus 12 ~~gs~~~y--~f~Ysi~y~~~ 30 (80)
.+|++|+| +|+||...+=.
T Consensus 117 ~SaaCGLFC~lFL~aF~~~p~ 137 (203)
T d1nlna_ 117 NSAACGLFCCMFLHAFANWPQ 137 (203)
T ss_dssp TCCCHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHHhCCC
Confidence 47899998 89999887653
No 5
>d1h5oa_ g.9.1.2 (A:) Crotamine {South american rattlesnake (Crotalus durissus terrificus) [TaxId: 8732]}
Probab=8.58 E-value=60 Score=15.57 Aligned_cols=10 Identities=20% Similarity=0.126 Sum_probs=7.4
Q ss_pred CCcccceeee
Q 034896 1 MNWFERMRSF 10 (80)
Q Consensus 1 eny~WwWrSF 10 (80)
+|-+|.|+.=
T Consensus 28 mdc~wk~kcc 37 (42)
T d1h5oa_ 28 MDCRWRWKCC 37 (42)
T ss_dssp SSSCTTEEEE
T ss_pred ccChHHHhhh
Confidence 4678999863
No 6
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.27 E-value=78 Score=16.11 Aligned_cols=9 Identities=0% Similarity=-0.307 Sum_probs=6.0
Q ss_pred Ccccceeee
Q 034896 2 NWFERMRSF 10 (80)
Q Consensus 2 ny~WwWrSF 10 (80)
|-+|||+.=
T Consensus 42 ~~~~W~~g~ 50 (72)
T d1ugva_ 42 QEPGWLEGT 50 (72)
T ss_dssp SSTTEEEEE
T ss_pred CCCCEEEEE
Confidence 346889864
No 7
>d1ujra_ d.289.1.1 (A:) RING finger protein 146 (Dactylidin) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.00 E-value=41 Score=18.92 Aligned_cols=8 Identities=0% Similarity=-0.114 Sum_probs=4.5
Q ss_pred Ccccceee
Q 034896 2 NWFERMRS 9 (80)
Q Consensus 2 ny~WwWrS 9 (80)
+|.|+|++
T Consensus 29 ~~~W~~~~ 36 (110)
T d1ujra_ 29 EYAWYYEG 36 (110)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEeC
Confidence 35666654
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.94 E-value=1.4e+02 Score=13.87 Aligned_cols=10 Identities=50% Similarity=0.836 Sum_probs=6.2
Q ss_pred hHHHHHHHHH
Q 034896 61 VGFRASLLFV 70 (80)
Q Consensus 61 iGfl~s~~Fv 70 (80)
.||+++..|+
T Consensus 6 Lg~iAt~LFi 15 (36)
T d2axtm1 6 LGLIATALFV 15 (36)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666664
No 9
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.93 E-value=85 Score=15.23 Aligned_cols=9 Identities=11% Similarity=-0.370 Sum_probs=5.9
Q ss_pred cccceeeec
Q 034896 3 WFERMRSFL 11 (80)
Q Consensus 3 y~WwWrSF~ 11 (80)
-+|||+.=.
T Consensus 33 ~~~W~~~~~ 41 (57)
T d1opka1 33 NGEWCEAQT 41 (57)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEEE
Confidence 368887643
No 10
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.24 E-value=78 Score=18.48 Aligned_cols=6 Identities=0% Similarity=-0.589 Sum_probs=0.0
Q ss_pred ccccee
Q 034896 3 WFERMR 8 (80)
Q Consensus 3 y~WwWr 8 (80)
++|+|+
T Consensus 12 ~QW~W~ 17 (137)
T d1v54b1 12 HQWYWS 17 (137)
T ss_dssp ETTEEE
T ss_pred EEccEE
Done!