BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034898
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1L8F|A Chain A, Structure Of 20k-Endoglucanase From Melanocarpus Albomyces
           At 1.8 A
          Length = 207

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 20  NADRKSFVWKKVKCPQQ 36
           NAD  SF +++V+CP++
Sbjct: 175 NADNPSFTFERVQCPEE 191


>pdb|1OA7|A Chain A, Structure Of Melanocarpus Albomyces Endoglucanase In
           Complex With Cellobiose
 pdb|1OA9|A Chain A, Structure Of Melanocarpus Albomyces Endoglucanase
          Length = 214

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 20  NADRKSFVWKKVKCPQQ 36
           NAD  SF +++V+CP++
Sbjct: 175 NADNPSFTFERVQCPEE 191


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.136    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,112,815
Number of Sequences: 62578
Number of extensions: 62227
Number of successful extensions: 157
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 3
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)