BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034898
         (79 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana
           GN=ULP1D PE=1 SV=1
          Length = 584

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 31  VKCPQQTTNVECGYYVIRFMKEIIESQDDSIKK 63
           V+ PQQ  + +CG +V+ F+K  IE     +K+
Sbjct: 514 VQVPQQKNDFDCGPFVLFFIKRFIEEAPQRLKR 546


>sp|Q53932|IPNS_STRCT Isopenicillin N synthase OS=Streptomyces cattleya GN=pcbC PE=3 SV=1
          Length = 321

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 22  DRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIES 56
           D++S  W+  +  +  ++V  GYY+ R  +E +ES
Sbjct: 68  DQRSTTWRSTRYNENNSHVRNGYYMARPGRETVES 102


>sp|Q54XR2|SENP8_DICDI Probable sentrin-specific protease 8 OS=Dictyostelium discoideum
           GN=senp8 PE=3 SV=1
          Length = 243

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 6   YILSAFKIFVAKMG-NADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIE 55
           +I+S FK  ++      + K F+  + K PQQ    +CG YV+  ++E+++
Sbjct: 138 FIISKFKFLLSSPPPKTNLKEFLINQ-KTPQQQNGYDCGLYVLSIIEELLK 187


>sp|O04539|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis
           thaliana GN=SNL4 PE=3 SV=3
          Length = 1326

 Score = 29.3 bits (64), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 7   ILSAFKIFVAKMGNAD-------RKSFVWKKVKCPQQTTNVE 41
           ++ AFK+F+A+    D        K  +W + KCPQ T +++
Sbjct: 356 LMDAFKVFLAQCDKNDGLLSGIVSKKSLWSEGKCPQPTKSLD 397


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.136    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,219,498
Number of Sequences: 539616
Number of extensions: 779959
Number of successful extensions: 2410
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2408
Number of HSP's gapped (non-prelim): 4
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)