Query 034898
Match_columns 79
No_of_seqs 29 out of 31
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1euv_A ULP1 protease; SUMO hyd 98.7 4.5E-08 1.5E-12 68.4 6.4 51 6-56 143-194 (221)
2 2bkr_A Sentrin-specific protea 98.6 8.2E-08 2.8E-12 66.2 5.3 47 7-57 132-178 (212)
3 2oix_A Xanthomonas outer prote 98.2 1.1E-06 3.6E-11 60.6 4.2 29 27-55 121-149 (186)
4 1th0_A SMT3-, sentrin-specific 98.2 2.5E-06 8.7E-11 59.5 5.7 26 31-56 174-199 (226)
5 3eay_A Sentrin-specific protea 98.1 1.5E-06 5.2E-11 66.4 2.9 52 6-57 221-280 (323)
6 2xph_A Sentrin-specific protea 98.1 6.6E-06 2.2E-10 58.0 5.6 28 30-57 185-212 (238)
7 1ffk_Y Ribosomal protein L39E; 45.2 13 0.00043 22.0 2.0 24 10-33 6-29 (49)
8 2jtt_C Calcyclin-binding prote 36.6 23 0.0008 19.4 2.1 20 46-65 8-27 (35)
9 3u5e_l L46, YL40, 60S ribosoma 25.8 10 0.00036 22.5 -0.6 23 10-32 8-30 (51)
10 4a18_B RPL39, ribosomal protei 24.4 11 0.00036 22.6 -0.8 23 10-32 8-30 (52)
11 3iz5_o 60S ribosomal protein L 20.4 11 0.00036 22.5 -1.4 23 10-32 8-30 (51)
No 1
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=98.67 E-value=4.5e-08 Score=68.41 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=40.6
Q ss_pred HHHHHhhHHHhhcCCCC-CCCceeEEecCCCCCCcccchhHHHHHHHHHHhc
Q 034898 6 YILSAFKIFVAKMGNAD-RKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIES 56 (79)
Q Consensus 6 ~i~salKi~v~~~~~~~-k~~~~Wi~~kCprQ~gg~ECGYYVMr~M~~II~~ 56 (79)
.++.+++-|..+....+ +..++.+.++||+|.||++||.||+.||..+..+
T Consensus 143 ~i~~~l~~~l~~e~~~~~~~~~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~ 194 (221)
T 1euv_A 143 AILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSAD 194 (221)
T ss_dssp HHHHHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEeecCCCCCCCCcCHHHHHHHHHHHHhCC
Confidence 46777888876655433 4567788999999999999999999999887655
No 2
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=98.56 E-value=8.2e-08 Score=66.19 Aligned_cols=47 Identities=21% Similarity=0.524 Sum_probs=35.9
Q ss_pred HHHHhhHHHhhcCCCCCCCceeEEecCCCCCCcccchhHHHHHHHHHHhcC
Q 034898 7 ILSAFKIFVAKMGNADRKSFVWKKVKCPQQTTNVECGYYVIRFMKEIIESQ 57 (79)
Q Consensus 7 i~salKi~v~~~~~~~k~~~~Wi~~kCprQ~gg~ECGYYVMr~M~~II~~~ 57 (79)
+...|+-+...... ...|..++||+|.||+|||.|||.||..+..+-
T Consensus 132 l~~~l~~~l~~~~~----~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~ 178 (212)
T 2bkr_A 132 VAEKLEAFLGRKGD----KLAFVEEKAPAQQNSYDCGMYVICNTEALCQNF 178 (212)
T ss_dssp HHHHHHHHHSCTTC----CCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccc----cceEeECCCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 44555555443322 356899999999999999999999999988764
No 3
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=98.22 E-value=1.1e-06 Score=60.64 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=24.3
Q ss_pred eeEEecCCCCCCcccchhHHHHHHHHHHh
Q 034898 27 VWKKVKCPQQTTNVECGYYVIRFMKEIIE 55 (79)
Q Consensus 27 ~Wi~~kCprQ~gg~ECGYYVMr~M~~II~ 55 (79)
++...+||+|.||+|||.||+.|+..+..
T Consensus 121 ~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~ 149 (186)
T 2oix_A 121 QTHEMPIAIQSDGYSAGDHVLTGIEVLAH 149 (186)
T ss_dssp GCEEECBCCCC--CCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 47789999999999999999999998864
No 4
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=98.19 E-value=2.5e-06 Score=59.53 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=23.8
Q ss_pred ecCCCCCCcccchhHHHHHHHHHHhc
Q 034898 31 VKCPQQTTNVECGYYVIRFMKEIIES 56 (79)
Q Consensus 31 ~kCprQ~gg~ECGYYVMr~M~~II~~ 56 (79)
+.||+|.||++||.||+.||..+..+
T Consensus 174 ~~~PqQ~Ng~DCGvfvl~~~~~~~~~ 199 (226)
T 1th0_A 174 HEIPQQLNGSDCGMFTCKYADYISRD 199 (226)
T ss_dssp TTSCCCCSSSCHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCC
Confidence 58999999999999999999988765
No 5
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=98.08 E-value=1.5e-06 Score=66.43 Aligned_cols=52 Identities=12% Similarity=0.309 Sum_probs=37.7
Q ss_pred HHHHHhhHHHhhcCCCC------CCCcee--EEecCCCCCCcccchhHHHHHHHHHHhcC
Q 034898 6 YILSAFKIFVAKMGNAD------RKSFVW--KKVKCPQQTTNVECGYYVIRFMKEIIESQ 57 (79)
Q Consensus 6 ~i~salKi~v~~~~~~~------k~~~~W--i~~kCprQ~gg~ECGYYVMr~M~~II~~~ 57 (79)
.+...|+-|...+-..+ ...-.| ..++||+|.||+|||.|||+||..+..+.
T Consensus 221 ~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~ 280 (323)
T 3eay_A 221 NTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDP 280 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcHHHHHHHHHHHHHhCC
Confidence 45666777666553322 112234 56899999999999999999999998776
No 6
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=98.05 E-value=6.6e-06 Score=57.98 Aligned_cols=28 Identities=21% Similarity=0.559 Sum_probs=24.8
Q ss_pred EecCCCCCCcccchhHHHHHHHHHHhcC
Q 034898 30 KVKCPQQTTNVECGYYVIRFMKEIIESQ 57 (79)
Q Consensus 30 ~~kCprQ~gg~ECGYYVMr~M~~II~~~ 57 (79)
.++||+|.||++||.||+.||..+..+.
T Consensus 185 ~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~ 212 (238)
T 2xph_A 185 SQEIPQQMNGSDCGMFACKYADCITKDR 212 (238)
T ss_dssp SSSSCCCSBGGGHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 4689999999999999999998887654
No 7
>1ffk_Y Ribosomal protein L39E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: a.137.1.1
Probab=45.21 E-value=13 Score=22.02 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.5
Q ss_pred HhhHHHhhcCCCCCCCceeEEecC
Q 034898 10 AFKIFVAKMGNADRKSFVWKKVKC 33 (79)
Q Consensus 10 alKi~v~~~~~~~k~~~~Wi~~kC 33 (79)
+.|.+.+....+++..|+||..+-
T Consensus 6 ~~K~rLaK~~kQNrpiP~Wv~~KT 29 (49)
T 1ffk_Y 6 ATKKRKAKLDNQNSRVPAYVMLKT 29 (49)
T ss_pred HHHHHHHHHHhccCCCCcEEEEec
Confidence 567888889999999999998764
No 8
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=36.63 E-value=23 Score=19.36 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCccchhhhh
Q 034898 46 VIRFMKEIIESQDDSIKKCV 65 (79)
Q Consensus 46 VMr~M~~II~~~~~~i~~~~ 65 (79)
+|.+|+.|+.++++.-.+.+
T Consensus 8 l~~~fk~iY~~gddd~kram 27 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTI 27 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 79999999999999866543
No 9
>3u5e_l L46, YL40, 60S ribosomal protein L39; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_O 2ww9_O 3izc_o 3izs_o 2wwb_O 3o5h_e 3o58_e 3u5i_l 4b6a_l 3jyw_1
Probab=25.77 E-value=10 Score=22.46 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.4
Q ss_pred HhhHHHhhcCCCCCCCceeEEec
Q 034898 10 AFKIFVAKMGNADRKSFVWKKVK 32 (79)
Q Consensus 10 alKi~v~~~~~~~k~~~~Wi~~k 32 (79)
+.|...+....+++..|+||..+
T Consensus 8 ~~K~rLaK~~kqNr~iP~Wv~~K 30 (51)
T 3u5e_l 8 RIKQKMAKAKKQNRPLPQWIRLR 30 (51)
T ss_dssp HHHHHHHHHHHTCSCCCGGGGGS
T ss_pred HHHHHHHHHHhccCCCCceEEEe
Confidence 46777888888999999999776
No 10
>4a18_B RPL39, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_B 4a1b_B 4a1d_B
Probab=24.43 E-value=11 Score=22.56 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.5
Q ss_pred HhhHHHhhcCCCCCCCceeEEec
Q 034898 10 AFKIFVAKMGNADRKSFVWKKVK 32 (79)
Q Consensus 10 alKi~v~~~~~~~k~~~~Wi~~k 32 (79)
+.|.+.+....+++..|+||..+
T Consensus 8 ~~K~rLaK~~kqNr~iP~Wv~~K 30 (52)
T 4a18_B 8 NMKKRFGRKIKQNRPLPNWYRYK 30 (52)
T ss_dssp HHHHHHHHHHHTTSCCCTTGGGC
T ss_pred HHHHHHHHHHhccCCCCceEEEe
Confidence 56777888889999999999776
No 11
>3iz5_o 60S ribosomal protein L39 (L39E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_o 2zkr_3
Probab=20.35 E-value=11 Score=22.47 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.5
Q ss_pred HhhHHHhhcCCCCCCCceeEEec
Q 034898 10 AFKIFVAKMGNADRKSFVWKKVK 32 (79)
Q Consensus 10 alKi~v~~~~~~~k~~~~Wi~~k 32 (79)
+.|.+.+....+++..|+||..+
T Consensus 8 ~~K~rLaK~~kqNr~iP~Wv~~K 30 (51)
T 3iz5_o 8 RIKQKLAKKQRQNRPIPYWIRMR 30 (51)
T ss_dssp HHHHHHHHHHHHSSCCCGGGGTS
T ss_pred HHHHHHHHHHhccCCCCceEEEe
Confidence 56778888888999999999776
Done!