BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034900
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NQE9|HINT3_HUMAN Histidine triad nucleotide-binding protein 3 OS=Homo sapiens
GN=HINT3 PE=1 SV=1
Length = 182
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLA----LPFIPR--WKHVKYL 53
M+ VG+ +L+++ R GFH PP S++HLHLH LA L F+ + ++ Y
Sbjct: 110 MVTVGKTILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYW 169
Query: 54 SLGPLGGFIEAEKLLEKIK 72
FI A+ L+EK++
Sbjct: 170 -------FITADHLIEKLR 181
>sp|Q5R9L4|HINT3_PONAB Histidine triad nucleotide-binding protein 3 OS=Pongo abelii
GN=HINT3 PE=2 SV=1
Length = 182
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLA----LPFIPR--WKHVKYL 53
M+ VG+ +L+++ R GFH PP S++HLHLH LA L F+ + ++ Y
Sbjct: 110 MVTVGKTILERNNFTDFTNVRMGFHMPPFCSISHLHLHVLAPVDQLGFLSKLVYRVNSYW 169
Query: 54 SLGPLGGFIEAEKLLEKIK 72
FI A+ L+EK++
Sbjct: 170 -------FITADHLIEKLR 181
>sp|Q28BZ2|HINT3_XENTR Histidine triad nucleotide-binding protein 3 OS=Xenopus tropicalis
GN=hint3 PE=2 SV=1
Length = 153
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLA----LPFIPR--WKHVKYL 53
M+ VG+ LQ++ R GFH PP S++HLHLH LA L F+ R ++ Y
Sbjct: 80 MMEVGKSTLQKNNVTDLEDIRLGFHYPPFCSISHLHLHVLAPASQLGFLSRMIYRVNSYW 139
Query: 54 SLGPLGGFIEAEKLLEKIKP 73
FI A++L+++++
Sbjct: 140 -------FITADELIDQLQA 152
>sp|Q8K3P7|HINT3_RAT Histidine triad nucleotide-binding protein 3 OS=Rattus norvegicus
GN=Hint3 PE=2 SV=2
Length = 175
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLA----LPFIPR--WKHVKYL 53
M+ VG+ +L+++ R GFH PP SV+HLHLH +A F+ R ++ Y
Sbjct: 103 MVTVGKTILERNNFTDFTDVRMGFHVPPFCSVSHLHLHVIAPAKEFGFLSRVVYRRDSYW 162
Query: 54 SLGPLGGFIEAEKLLEKIK 72
FI + LLEK++
Sbjct: 163 -------FITGDYLLEKLR 174
>sp|Q2YDJ4|HINT3_BOVIN Histidine triad nucleotide-binding protein 3 OS=Bos taurus GN=HINT3
PE=2 SV=1
Length = 182
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLA----LPFIPR--WKHVKYL 53
M+ VG+ +L+++ R GFH P S+ HLHLH LA L F+ R ++ Y
Sbjct: 110 MVTVGKAILERNNFTDFENTRMGFHVSPFCSIAHLHLHVLAPADQLSFMSRLVYRVNSYW 169
Query: 54 SLGPLGGFIEAEKLLEKIK 72
FI A+ L+EK++
Sbjct: 170 -------FITADYLIEKLR 181
>sp|Q9CPS6|HINT3_MOUSE Histidine triad nucleotide-binding protein 3 OS=Mus musculus
GN=Hint3 PE=2 SV=1
Length = 165
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 1 MLNVGQELLQQDA-PQSNQYRFGFHQPPLNSVNHLHLHCLA 40
M+ G+ +L+++ R GFH PP S++HLHLH +A
Sbjct: 93 MVAAGKTMLERNNFTDFTDVRMGFHVPPFCSISHLHLHVIA 133
>sp|P61798|APTX_CHICK Aprataxin (Fragment) OS=Gallus gallus GN=APTX PE=2 SV=1
Length = 316
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 1 MLNVGQELLQQ-DAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFI-PRWKHVKYLSLGPL 58
M VGQ+++QQ A +S ++R G+H P S++ LHLH ++ F P K K+ +
Sbjct: 201 MHAVGQKMIQQCPAKESLEFRLGYHAIP--SMSQLHLHVISQDFDSPALKTKKHWNSFTT 258
Query: 59 GGFIEAEKLLEKIK 72
F+ +E+++E ++
Sbjct: 259 EYFLNSEEVIEMVR 272
>sp|Q7T287|APTX_XENLA Aprataxin OS=Xenopus laevis GN=aptx PE=2 SV=1
Length = 347
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 19 YRFGFHQPPLNSVNHLHLHCLALPFI-PRWKHVKYLSLGPLGGFIEAEKLLEKIK 72
+RFG+H P S++H+HLH ++ F P K+ K+ + F+E++ ++E +K
Sbjct: 251 FRFGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFLESQAVIEMLK 303
>sp|Q5PNN8|HINT3_DANRE Histidine triad nucleotide-binding protein 3 OS=Danio rerio
GN=hint3 PE=2 SV=1
Length = 160
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 1 MLNVGQELLQ-QDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPF--IPRWKHVKYLSLGP 57
M +G+ +L+ + GFH PP +V HLHLH LA P+ + +W K+ +
Sbjct: 84 MAEMGRNVLKANNVTDLKDISLGFHVPPYITVPHLHLHVLA-PYSQLYKWAINKFRT--- 139
Query: 58 LGGFIEAEKLLE 69
+I EK +E
Sbjct: 140 -NWYINEEKTVE 150
>sp|P61800|APTX_TAKRU Aprataxin OS=Takifugu rubripes GN=aptx PE=2 SV=1
Length = 356
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 1 MLNVGQELLQQDAPQSN-QYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPL 58
M V +++++Q S ++R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 241 MQQVAEQMIRQCPDASTPRFRSGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFTT 298
Query: 59 GGFIEAEKLLEKIKPLSSTS 78
FIE++ +++ ++ S S
Sbjct: 299 DYFIESQAVIQMLETDGSIS 318
>sp|P61797|APTX_CANFA Aprataxin OS=Canis familiaris GN=APTX PE=2 SV=1
Length = 342
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MLNVGQELLQQDAPQSN-QYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPL 58
M VG++++ A S ++R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 227 MHTVGEKMIADFAGSSKLRFRLGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFNT 284
Query: 59 GGFIEAEKLLEKIK 72
F+E++ ++E ++
Sbjct: 285 EYFLESQAVIEMVQ 298
>sp|Q7YRZ1|APTX_PIG Aprataxin OS=Sus scrofa GN=APTX PE=2 SV=1
Length = 356
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MLNVGQELLQQDAPQSN-QYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPL 58
M VG++++ A S ++R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 241 MHTVGEKVIADFAGSSKLRFRLGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFNT 298
Query: 59 GGFIEAEKLLEKIK 72
F+E++ ++E ++
Sbjct: 299 EYFLESQAVIEMVQ 312
>sp|Q7Z2E3|APTX_HUMAN Aprataxin OS=Homo sapiens GN=APTX PE=1 SV=2
Length = 356
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MLNVGQELLQQDAPQSN-QYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPL 58
M VG++++ A S ++R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 241 MHTVGEKVIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFNT 298
Query: 59 GGFIEAEKLLEKIK 72
F+E++ ++E ++
Sbjct: 299 EYFLESQAVIEMVQ 312
>sp|Q7YRZ2|APTX_BOVIN Aprataxin OS=Bos taurus GN=APTX PE=2 SV=1
Length = 356
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MLNVGQELLQQDAPQSN-QYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPL 58
M VG++++ A S ++R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 241 MHAVGEKVIADFAGSSKFRFRLGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFNT 298
Query: 59 GGFIEAEKLLEKIK 72
F+E++ ++E ++
Sbjct: 299 EYFLESQAVIEMVQ 312
>sp|Q9BGQ0|APTX_MACFA Aprataxin OS=Macaca fascicularis GN=APTX PE=2 SV=1
Length = 356
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MLNVGQELLQQDAPQSN-QYRFGFHQPPLNSVNHLHLHCLALPFI-PRWKHVKYLSLGPL 58
M VG++++ A S ++R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 241 MHTVGEKVIVDFAGSSKLRFRLGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFNT 298
Query: 59 GGFIEAEKLLEKIK 72
F+E++ ++E ++
Sbjct: 299 EYFLESQAVIEMVQ 312
>sp|P61799|APTX_DANRE Aprataxin OS=Danio rerio GN=aptx PE=2 SV=1
Length = 324
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 1 MLNVGQELLQQDAPQSNQ--YRFGFHQPPLNSVNHLHLHCLALPFI-PRWKHVKYLSLGP 57
M V ++++Q P +++ +R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 209 MQRVADQMVEQ-CPDAHKLSFRLGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFT 265
Query: 58 LGGFIEAEKLL 68
F+E++ ++
Sbjct: 266 TDYFVESQDVI 276
>sp|Q55503|HIS1_SYNY3 ATP phosphoribosyltransferase OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=hisG PE=3 SV=1
Length = 210
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 2 LNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHC-------LALP--FIPRWKHVKY 52
LN G L PQ++ YR PP V +HC L LP IP + V+
Sbjct: 88 LNFGGCRLSVAVPQASPYRRSVDLPPHGRVASKFVHCALEHFRRLDLPVEIIPLYGSVE- 146
Query: 53 LSLGPLGGFIEA 64
LGP+ G EA
Sbjct: 147 --LGPITGMSEA 156
>sp|Q6XHA6|ROC10_DICDI Probable inactive serine/threonine-protein kinase roco10
OS=Dictyostelium discoideum GN=roco10 PE=3 SV=1
Length = 2646
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 19 YRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYL---SLGPLGGFIEAEKLLEKI 71
+RF F P N + + C +P +P H L SL +GG+ +LL +I
Sbjct: 2523 HRFKFTVPTTNKNGWVEIECKGIPPLPMVGHSSILWNNSLIVIGGWFNKARLLNQI 2578
>sp|P61802|APTX_CIOIN Aprataxin OS=Ciona intestinalis GN=APTX PE=2 SV=1
Length = 380
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 1 MLNVGQELLQQ--DAPQSNQYRFGFHQPPLNSVNHLHLHCLALPF 43
+L VGQEL + D ++RFG+H + S++ +H+H ++ F
Sbjct: 265 ILKVGQELAAEVKDKQPDVEFRFGYH--AVASMSQMHMHVISQDF 307
>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1
Length = 477
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 6 QELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVK 51
QEL QQ A ++ + G + P + + HLH +C+ + W+ ++
Sbjct: 386 QELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLE 431
>sp|Q7TQC5|APTX_MOUSE Aprataxin OS=Mus musculus GN=Aptx PE=2 SV=2
Length = 342
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 1 MLNVGQELLQQDAPQSN-QYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPL 58
M VG++++ A S ++R G+H P S++H+HLH ++ F P K+ K+ +
Sbjct: 227 MHAVGEKVIADFAGSSKLRFRLGYHAIP--SMSHVHLHVISQDFDSPCLKNKKHWNSFNT 284
Query: 59 GGFIEAEKLLEKIK 72
F+E++ +++ ++
Sbjct: 285 EYFLESQAVIKMVQ 298
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,577,485
Number of Sequences: 539616
Number of extensions: 1062876
Number of successful extensions: 1708
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 25
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)