Query 034900
Match_columns 79
No_of_seqs 103 out of 178
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4359 Protein kinase C inhib 99.8 4.6E-21 9.9E-26 134.7 5.0 70 1-73 95-166 (166)
2 KOG0562 Predicted hydrolase (H 99.7 3E-17 6.5E-22 117.6 2.7 61 16-78 82-143 (184)
3 PF11969 DcpS_C: Scavenger mRN 99.5 1.8E-14 4E-19 95.1 3.6 50 1-52 63-115 (116)
4 cd01278 aprataxin_related apra 98.7 1.2E-08 2.6E-13 64.7 3.8 37 4-40 67-104 (104)
5 cd01276 PKCI_related Protein K 98.1 6E-06 1.3E-10 52.0 4.2 39 2-40 63-103 (104)
6 PRK10687 purine nucleoside pho 97.6 8.9E-05 1.9E-09 49.3 4.0 41 2-42 66-108 (119)
7 cd00468 HIT_like HIT family: H 96.9 0.001 2.2E-08 39.9 3.2 23 17-39 61-85 (86)
8 KOG2720 Predicted hydrolase (H 96.1 0.0026 5.6E-08 50.8 1.4 34 14-47 211-245 (431)
9 KOG3969 Uncharacterized conser 96.0 0.017 3.7E-07 44.8 5.4 61 3-73 219-281 (310)
10 cd01277 HINT_subgroup HINT (hi 95.9 0.015 3.2E-07 36.1 3.8 25 15-39 75-101 (103)
11 cd01275 FHIT FHIT (fragile his 94.9 0.044 9.6E-07 35.7 3.7 25 16-40 76-102 (126)
12 PLN03103 GDP-L-galactose-hexos 94.2 0.057 1.2E-06 43.2 3.6 37 3-41 205-242 (403)
13 PF01230 HIT: HIT domain; Int 94.1 0.1 2.2E-06 32.4 4.0 24 17-40 69-94 (98)
14 PRK13878 conjugal transfer rel 93.9 0.071 1.5E-06 45.5 3.8 66 1-74 86-151 (746)
15 cd00608 GalT Galactose-1-phosp 93.8 0.17 3.8E-06 38.4 5.5 54 17-73 264-328 (329)
16 PRK11720 galactose-1-phosphate 93.4 0.18 3.9E-06 39.1 5.0 57 17-74 274-338 (346)
17 TIGR00209 galT_1 galactose-1-p 90.1 0.83 1.8E-05 35.4 5.3 57 17-74 274-338 (347)
18 PLN02643 ADP-glucose phosphory 88.4 1.9 4.1E-05 33.2 6.2 54 17-74 272-332 (336)
19 PF03432 Relaxase: Relaxase/Mo 87.8 0.86 1.9E-05 31.9 3.7 38 1-42 74-111 (242)
20 KOG3275 Zinc-binding protein o 86.5 0.3 6.6E-06 33.7 0.8 38 4-44 81-122 (127)
21 COG5075 Uncharacterized conser 85.0 1.7 3.6E-05 33.7 4.2 50 13-73 225-276 (305)
22 COG0537 Hit Diadenosine tetrap 84.5 0.48 1.1E-05 32.0 1.0 12 29-40 92-103 (138)
23 PF08869 XisI: XisI protein; 65.1 3 6.5E-05 28.0 0.8 23 3-26 78-100 (111)
24 PF00799 Gemini_AL1: Geminivir 60.7 5.6 0.00012 26.6 1.5 43 33-77 49-104 (114)
25 COG1085 GalT Galactose-1-phosp 59.1 42 0.00091 26.5 6.2 72 3-75 248-330 (338)
26 PF02744 GalP_UDP_tr_C: Galact 50.5 19 0.0004 25.1 2.8 56 16-72 92-154 (166)
27 KOG3379 Diadenosine polyphosph 42.6 13 0.00029 26.4 1.0 11 30-40 95-105 (150)
28 PF06528 Phage_P2_GpE: Phage P 37.5 11 0.00024 21.1 -0.0 10 18-27 3-12 (39)
29 PF07103 DUF1365: Protein of u 33.7 20 0.00044 26.6 0.9 11 22-32 157-167 (254)
30 TIGR01252 acetolac_decarb alph 29.1 50 0.0011 24.5 2.3 28 15-42 149-179 (232)
31 PRK13863 type IV secretion sys 21.7 1.4E+02 0.0031 24.6 3.8 36 2-41 99-139 (446)
32 KOG0604 MAP kinase-activated p 21.0 40 0.00086 27.3 0.5 43 25-71 260-305 (400)
33 PF12689 Acid_PPase: Acid Phos 20.4 84 0.0018 22.1 2.0 18 59-76 45-62 (169)
No 1
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.83 E-value=4.6e-21 Score=134.70 Aligned_cols=70 Identities=33% Similarity=0.563 Sum_probs=59.9
Q ss_pred CHHHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCc-ccccceeeeccCCCccceecHHHHHHHhcc
Q 034900 1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPF-IPRWKHVKYLSLGPLGGFIEAEKLLEKIKP 73 (79)
Q Consensus 1 M~~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~-~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~ 73 (79)
|.++|+.++++. ..+..+.|+|||.|||.||+|||||+|+++- ++-..++.|++ | .||++++++|++|++
T Consensus 95 m~~~G~~~l~r~~~td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMgf~sKl~FrP-s--~wFK~a~~lI~~L~~ 166 (166)
T KOG4359|consen 95 MVTVGKTILERNNFTDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMGFLSKLVFRP-S--YWFKTADHLIEKLRT 166 (166)
T ss_pred HHHHHHHHHHHhccCCchheeEeccCCCcceeeeeeEeeecchHHhchhheeEeec-c--eEeeeHHHHHHHhhC
Confidence 678899998886 5778899999999999999999999999663 34445789998 4 489999999999984
No 2
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=99.66 E-value=3e-17 Score=117.56 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=57.6
Q ss_pred CCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCc-cceecHHHHHHHhccCCCCC
Q 034900 16 SNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPL-GGFIEAEKLLEKIKPLSSTS 78 (79)
Q Consensus 16 ~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~-~~F~~~d~vi~~L~~~g~~~ 78 (79)
...+|+|||+.| ||.+||||||++||.|++++.|.+||||. ++|++.+++++++++.|+-+
T Consensus 82 ~~~f~vG~HavP--SM~~LHLHVISkDf~S~sLKNKKHwnSFnT~fFv~~~~~~~~~~~~G~~t 143 (184)
T KOG0562|consen 82 CNYFRVGFHAVP--SMNNLHLHVISKDFVSPSLKNKKHWNSFNTEFFVKSDDVTENVPTRGTAT 143 (184)
T ss_pred hhheeeeeccCc--chhheeEEEeecccCCchhccchhhcccCccceeeccchhhhhhccccch
Confidence 457999999999 99999999999999999999999999998 89999999999999999754
No 3
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.49 E-value=1.8e-14 Score=95.12 Aligned_cols=50 Identities=42% Similarity=0.646 Sum_probs=37.8
Q ss_pred CHHHHHHHHHhhC---CCCCcceeeeecCCCCCCcceeeeeeecCcccccceeee
Q 034900 1 MLNVGQELLQQDA---PQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKY 52 (79)
Q Consensus 1 M~~vg~~~l~~~~---~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky 52 (79)
|.++|++++++.+ ....++++|||+|| ||.|||||||+.|+.|.+++.|.
T Consensus 63 m~~~~~~~~~~~~~~~~~~~~~~~gfH~~P--S~~HLHlHvi~~~~~s~~lk~k~ 115 (116)
T PF11969_consen 63 MREVARELLKEEYPGDLDSDDIRLGFHYPP--SVYHLHLHVISPDFDSPCLKNKK 115 (116)
T ss_dssp HHHHHHHHHHHHH-TT-EGGGEEEEEESS---SSSS-EEEEEETTS--TTSB---
T ss_pred HHHHHHHHHHHhcccccchhhhcccccCCC--CcceEEEEEccCCCcCcccccCC
Confidence 6788999999875 34678999999999 99999999999999998887664
No 4
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=98.74 E-value=1.2e-08 Score=64.68 Aligned_cols=37 Identities=51% Similarity=1.014 Sum_probs=28.2
Q ss_pred HHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeee
Q 034900 4 VGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 4 vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
.+.+.+.+. +.+...+++|+|..|+.||.|||+|+|+
T Consensus 67 ~~~~~l~~~~~~~~~~~n~g~h~~p~~~v~H~H~Hvi~ 104 (104)
T cd01278 67 VGREKLLRSDNTDPSEFRFGFHAPPFTSVSHLHLHVIA 104 (104)
T ss_pred HHHHHHHHHcCCCccCeEEEeCCCCCcCeeeEEEEeeC
Confidence 344434433 3444579999999999999999999996
No 5
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=98.07 E-value=6e-06 Score=51.99 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeee
Q 034900 2 LNVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLA 40 (79)
Q Consensus 2 ~~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~ 40 (79)
.+.++++++..+.+...+.++||.+|+ .+|.|||+|+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~ 103 (104)
T cd01276 63 LSAAAKVAKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLG 103 (104)
T ss_pred HHHHHHHHHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeC
Confidence 345566666665434679999999997 689999999996
No 6
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=97.61 E-value=8.9e-05 Score=49.34 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCCcceeeeecC--CCCCCcceeeeeeecC
Q 034900 2 LNVGQELLQQDAPQSNQYRFGFHQP--PLNSVNHLHLHCLALP 42 (79)
Q Consensus 2 ~~vg~~~l~~~~~~~~~~r~GfH~p--Pf~Sv~HLHlHvi~~~ 42 (79)
.+++++++++.+.+...++++++.. +..+|.|||+|+|...
T Consensus 66 ~~~~~~~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~ 108 (119)
T PRK10687 66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGR 108 (119)
T ss_pred HHHHHHHHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCc
Confidence 3556666665655556899999976 5789999999999843
No 7
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=96.95 E-value=0.001 Score=39.89 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=17.0
Q ss_pred Ccceeee--ecCCCCCCcceeeeee
Q 034900 17 NQYRFGF--HQPPLNSVNHLHLHCL 39 (79)
Q Consensus 17 ~~~r~Gf--H~pPf~Sv~HLHlHvi 39 (79)
..+++.+ +.++..|+.|+|+|+|
T Consensus 61 ~~~~~~~n~g~~~g~~v~H~H~hii 85 (86)
T cd00468 61 PSLTVFVNDGAAAGQSVPHVHLHVL 85 (86)
T ss_pred CceEEEEcCCccCCCcCCEEEEEeC
Confidence 3455555 4566789999999997
No 8
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=96.12 E-value=0.0026 Score=50.79 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=28.0
Q ss_pred CCCCcceeeeecC-CCCCCcceeeeeeecCccccc
Q 034900 14 PQSNQYRFGFHQP-PLNSVNHLHLHCLALPFIPRW 47 (79)
Q Consensus 14 ~~~~~~r~GfH~p-Pf~Sv~HLHlHvi~~~~~s~~ 47 (79)
.|.+.+|+||-.+ .|.||+|||+|++.+|+.++.
T Consensus 211 ~dd~~frlgyNSlga~AsVNHLHfha~y~p~d~~i 245 (431)
T KOG2720|consen 211 ADDPYFRLGYNSLGAFASVNHLHFHAYYLPMDFPI 245 (431)
T ss_pred cCCchhheecccchhhhhhhhhhhhhhhccccCcc
Confidence 3446899999965 688999999999998876654
No 9
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.017 Score=44.76 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=43.5
Q ss_pred HHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCcc-cccceeeeccCCCccceecHHHHHHHhcc
Q 034900 3 NVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFI-PRWKHVKYLSLGPLGGFIEAEKLLEKIKP 73 (79)
Q Consensus 3 ~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~-s~~~~~ky~~~s~~~~F~~~d~vi~~L~~ 73 (79)
+-+++++.++ |.+.+..|+=||.-| |--|||+|++...+. .. ++.-+-=+.-||||+.|+-
T Consensus 219 ~k~~~~i~~~y~v~~dqlrmf~HYqP--SyYHlHVHi~nik~~~~~--------~~~~~rAilLddVI~nL~~ 281 (310)
T KOG3969|consen 219 NKSREAIPQRYGVDPDQLRMFFHYQP--SYYHLHVHIVNIKHDHAP--------GSGCGRAILLDDVIENLEL 281 (310)
T ss_pred HHHHHHHHHHhCCCchhEEEEEEecC--ceEEEEEEEEeccCCCCC--------CccccceeeHHHHHHHhcc
Confidence 3455556555 788889999999999 999999999985443 11 1111223678999999985
No 10
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=95.86 E-value=0.015 Score=36.05 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.3
Q ss_pred CCCcceeeeecCCC--CCCcceeeeee
Q 034900 15 QSNQYRFGFHQPPL--NSVNHLHLHCL 39 (79)
Q Consensus 15 ~~~~~r~GfH~pPf--~Sv~HLHlHvi 39 (79)
+...+.+++|..|. .++.|+|+|++
T Consensus 75 ~~~~~n~~~~~~~~~g~~~~H~HiHii 101 (103)
T cd01277 75 KADGLNILQNNGRAAGQVVFHVHVHVI 101 (103)
T ss_pred CCCceEEEEeCCcccCcccCEEEEEEc
Confidence 34579999998764 67999999997
No 11
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=94.88 E-value=0.044 Score=35.69 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=21.1
Q ss_pred CCcceeeeecCCC--CCCcceeeeeee
Q 034900 16 SNQYRFGFHQPPL--NSVNHLHLHCLA 40 (79)
Q Consensus 16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~ 40 (79)
...+.+++|..|- .++.|+|+|+|-
T Consensus 76 ~~~~n~~~~~g~~~gq~v~H~HiHiiP 102 (126)
T cd01275 76 PDGFNIGINDGKAGGGIVPHVHIHIVP 102 (126)
T ss_pred CCceEEEEeCCcccCCCcCEEEEEEeC
Confidence 4579999999883 478999999996
No 12
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=94.22 E-value=0.057 Score=43.24 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=26.1
Q ss_pred HHHHHHHHhhCCCCCcceeeeecCC-CCCCcceeeeeeec
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQPP-LNSVNHLHLHCLAL 41 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~pP-f~Sv~HLHlHvi~~ 41 (79)
+++.+++.+-+. ..+|+||--+- |.||+|||+|+..+
T Consensus 205 ~la~~~a~~~~~--p~frvgYNSlGA~ASvNHLHFQa~yl 242 (403)
T PLN03103 205 LLALYMAAEANN--PYFRVGYNSLGAFATINHLHFQAYYL 242 (403)
T ss_pred HHHHHHHHhcCC--CcEEEEecCCccccCcceeeeeeccc
Confidence 344444443332 46999999764 45999999999995
No 13
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=94.11 E-value=0.1 Score=32.42 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=16.6
Q ss_pred CcceeeeecCC--CCCCcceeeeeee
Q 034900 17 NQYRFGFHQPP--LNSVNHLHLHCLA 40 (79)
Q Consensus 17 ~~~r~GfH~pP--f~Sv~HLHlHvi~ 40 (79)
..++++...-+ -++|.|||+|+|.
T Consensus 69 ~~~~~~~~~g~~~gq~v~HlH~HviP 94 (98)
T PF01230_consen 69 DGYNVIINNGPAAGQSVPHLHFHVIP 94 (98)
T ss_dssp SEEEEEEEESGGGTSSSSS-EEEEEE
T ss_pred ceeeccccchhhhcCccCEEEEEEec
Confidence 35777776433 3589999999996
No 14
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=93.91 E-value=0.071 Score=45.52 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCccceecHHHHHHHhccC
Q 034900 1 MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPL 74 (79)
Q Consensus 1 M~~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~ 74 (79)
|.+++++++++.|....++.+.-|. ..+|+|+|++.--.. + ...+|.. ++..|.+..++..+|+.+
T Consensus 86 ~~~I~~~~~~~LG~~~hQ~Vva~H~----DTdh~HiHIviNrV~-p-~g~Ki~d--~~~~yr~L~kicreLE~e 151 (746)
T PRK13878 86 LRAIEERICAGLGYGEHQRVSAVHH----DTDNLHIHIAINKIH-P-TRHTIHE--PYYAYRTLAELCTKLERD 151 (746)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEEC----CCCCceeEEEEeeec-C-CCCeecC--chHHHHHHHHHHHHHHHH
Confidence 4678899998888766789999997 689999999983322 2 2334543 223566788888888754
No 15
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=93.85 E-value=0.17 Score=38.39 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=32.6
Q ss_pred CcceeeeecCCCC------CCcceeeeeeecCcccccceeeeccCCCc--cc---eecHHHHHHHhcc
Q 034900 17 NQYRFGFHQPPLN------SVNHLHLHCLALPFIPRWKHVKYLSLGPL--GG---FIEAEKLLEKIKP 73 (79)
Q Consensus 17 ~~~r~GfH~pPf~------Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~--~~---F~~~d~vi~~L~~ 73 (79)
..+.+|+|..|.+ ++.|+|+|++- ..+. .+++|....-+ +. -.+.|++.++|++
T Consensus 264 ~pyn~~~h~~P~~~~~~~~~~~H~Hihi~P--r~~~-~~~~~~aGfE~~~g~~in~~~PE~aA~~LR~ 328 (329)
T cd00608 264 FPYSMGWHQAPTGGKELENWYYHWHFEIPP--RRSA-TVLKFMAGFELGAGEFINDVTPEQAAARLRE 328 (329)
T ss_pred CCeEEEEeccCCCCCcCCcceEEEEEEeCC--CcCC-CceeeeEEeeccCCCccCCCCHHHHHHHHhc
Confidence 4799999999976 55677777764 2221 12344321000 11 3678888888875
No 16
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=93.43 E-value=0.18 Score=39.09 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=35.8
Q ss_pred CcceeeeecCCCC----CCcceeeeeeecCcccccceeeeccCCCc-cce---ecHHHHHHHhccC
Q 034900 17 NQYRFGFHQPPLN----SVNHLHLHCLALPFIPRWKHVKYLSLGPL-GGF---IEAEKLLEKIKPL 74 (79)
Q Consensus 17 ~~~r~GfH~pPf~----Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~-~~F---~~~d~vi~~L~~~ 74 (79)
..+.+|+|..|.+ ++.|+|+|++-.=.++. .+.||....-+ +.| .+.|++-++|++-
T Consensus 274 ~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~-~~~k~~aGfE~~g~~in~~~PE~aA~~LR~~ 338 (346)
T PRK11720 274 FPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSA-TVRKFMVGYEMLAETQRDLTAEQAAERLRAV 338 (346)
T ss_pred CCCceeEEecccCCCCCeeEEEEEEEeCCccCcc-ccccceeeeecccCccCCCCHHHHHHHHhhc
Confidence 3599999999964 46889999875212222 13444331111 223 6889999999874
No 17
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=90.09 E-value=0.83 Score=35.44 Aligned_cols=57 Identities=26% Similarity=0.448 Sum_probs=33.7
Q ss_pred CcceeeeecCCCCC--Ccc--eeeeeeecCcccccceeeeccCCCc-cce---ecHHHHHHHhccC
Q 034900 17 NQYRFGFHQPPLNS--VNH--LHLHCLALPFIPRWKHVKYLSLGPL-GGF---IEAEKLLEKIKPL 74 (79)
Q Consensus 17 ~~~r~GfH~pPf~S--v~H--LHlHvi~~~~~s~~~~~ky~~~s~~-~~F---~~~d~vi~~L~~~ 74 (79)
..+.+|+|..|.+. .+| +|+|++-.-.++. .+.||....-+ +.| ++.|++-++|++-
T Consensus 274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~-~~~k~~aGfE~~g~~in~~~PE~aA~~LR~~ 338 (347)
T TIGR00209 274 FPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSA-TVRKFMVGYEMLGETQRDLTAEQAAERLRAL 338 (347)
T ss_pred CCcceeEEecccCCCCCcEEEEEEEEeCCccccc-ccccceeehhhhcCccCCCCHHHHHHHHHhc
Confidence 36999999999764 355 6666654212222 13444332111 334 6788888888865
No 18
>PLN02643 ADP-glucose phosphorylase
Probab=88.37 E-value=1.9 Score=33.23 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=33.0
Q ss_pred CcceeeeecCCCC----CCcceeeeeeecCcccccceeeeccCCCccce---ecHHHHHHHhccC
Q 034900 17 NQYRFGFHQPPLN----SVNHLHLHCLALPFIPRWKHVKYLSLGPLGGF---IEAEKLLEKIKPL 74 (79)
Q Consensus 17 ~~~r~GfH~pPf~----Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F---~~~d~vi~~L~~~ 74 (79)
..+.+|+|..|.. .+.|.|+|+--.|-......+--.+ +.| ++.|++-++|++-
T Consensus 272 ~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~~aGfElg~----g~~in~~~PE~aA~~LR~~ 332 (336)
T PLN02643 272 PPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSGVGGFELGT----GCYINPVFPEDAAKVLREV 332 (336)
T ss_pred CCceeeeecCCCccccCcccceEEEEEEecCcCCccceeccC----CCeeCCCCHHHHHHHHHhC
Confidence 4799999999973 3567776554444332222222222 223 6889999999874
No 19
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=87.84 E-value=0.86 Score=31.88 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeeecC
Q 034900 1 MLNVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLALP 42 (79)
Q Consensus 1 M~~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~ 42 (79)
|.+++++++++.+.+..++.++-|.- -+|+|+|++.-.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~~H~D----~~h~H~Hivin~ 111 (242)
T PF03432_consen 74 AHEIAREFAEEMGPGNHQYVVVVHTD----TDHPHVHIVINR 111 (242)
T ss_pred HHHHHHHHHHHcCCCCcceEEEECCC----cCeeeeeEEEee
Confidence 46788999998887667899999985 799999999943
No 20
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=86.47 E-value=0.3 Score=33.74 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred HHHHHHHhhCCCCCccee----eeecCCCCCCcceeeeeeecCcc
Q 034900 4 VGQELLQQDAPQSNQYRF----GFHQPPLNSVNHLHLHCLALPFI 44 (79)
Q Consensus 4 vg~~~l~~~~~~~~~~r~----GfH~pPf~Sv~HLHlHvi~~~~~ 44 (79)
+++++.++.|.+. .||+ |=.. --||.|+|+|||.--.+
T Consensus 81 ~~k~vak~~Gl~~-gYrvv~NnG~~g--~QsV~HvH~HvlgGrqm 122 (127)
T KOG3275|consen 81 VAKKVAKALGLED-GYRVVQNNGKDG--HQSVYHVHLHVLGGRQM 122 (127)
T ss_pred HHHHHHHHhCccc-ceeEEEcCCccc--ceEEEEEEEEEeCCccc
Confidence 4566666555432 1333 2211 33999999999983333
No 21
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=85.03 E-value=1.7 Score=33.70 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=36.2
Q ss_pred CCCCCcceeeeecCCCCCCcceeeeeee--cCcccccceeeeccCCCccceecHHHHHHHhcc
Q 034900 13 APQSNQYRFGFHQPPLNSVNHLHLHCLA--LPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKP 73 (79)
Q Consensus 13 ~~~~~~~r~GfH~pPf~Sv~HLHlHvi~--~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~ 73 (79)
+.+.++.|+=+|.-| |--|||+|+.- .|--.. .--+-=+.-+|||+.|+-
T Consensus 225 ~vd~n~l~mfvHY~P--sYyhlHvHI~nIkh~~g~~---------~a~graIlL~DVI~~Lr~ 276 (305)
T COG5075 225 GVDPNELRMFVHYQP--SYYHLHVHIVNIKHPHGGN---------VACGRAILLEDVIENLRI 276 (305)
T ss_pred CcChhHeEEEEEecc--ceEEEEEEEEeecccCCCC---------cccceeeEHHHHHHHhcc
Confidence 466788999999999 99999999987 332110 000234788999999986
No 22
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=84.48 E-value=0.48 Score=32.03 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=10.8
Q ss_pred CCCcceeeeeee
Q 034900 29 NSVNHLHLHCLA 40 (79)
Q Consensus 29 ~Sv~HLHlHvi~ 40 (79)
-.|.|||+|+|.
T Consensus 92 q~V~HlH~HvIP 103 (138)
T COG0537 92 QEVFHLHIHIIP 103 (138)
T ss_pred cCcceEEEEEcC
Confidence 379999999998
No 23
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=65.15 E-value=3 Score=28.04 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=15.4
Q ss_pred HHHHHHHHhhCCCCCcceeeeecC
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQP 26 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~p 26 (79)
.+|.+|++ .|...++..+|||.|
T Consensus 78 gIa~eLve-~GVpk~dIVLgF~~P 100 (111)
T PF08869_consen 78 GIAEELVE-AGVPKEDIVLGFHPP 100 (111)
T ss_dssp HHHHHHHH-TT--GGGEEETTS-G
T ss_pred HHHHHHHH-cCCCHHHEEEccCCc
Confidence 46777665 677778999999976
No 24
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=60.73 E-value=5.6 Score=26.63 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=23.5
Q ss_pred ceeeeeeec-------------CcccccceeeeccCCCccceecHHHHHHHhccCCCC
Q 034900 33 HLHLHCLAL-------------PFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSST 77 (79)
Q Consensus 33 HLHlHvi~~-------------~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~g~~ 77 (79)
-.|+||+.+ |..++-+...|++|-- -=+++.+|..++++.|.+
T Consensus 49 ~~HlH~liqf~~k~~~~n~r~FDi~~p~~s~~fHPNIq--~aKs~s~vk~YI~KDgd~ 104 (114)
T PF00799_consen 49 SPHLHVLIQFEGKFQCTNPRFFDIVSPSRSAHFHPNIQ--GAKSSSDVKSYIEKDGDY 104 (114)
T ss_dssp -EEEEEEEEEEEEEE---TTSS-EE-SSSS-EE--EEE--EESSSTHHHHHHH--SSE
T ss_pred CeeeeEEEecCCceeEeCCCeeeccCCccccccccccc--cccCHHHHHHHhhcCCCE
Confidence 579999871 1123333445776532 237889999999999864
No 25
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=59.08 E-value=42 Score=26.52 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=38.7
Q ss_pred HHHHHHHHhhC---CCCCcceeeeecCCCCC---CcceeeeeeecCcccccceeeeccCCCc-----cceecHHHHHHHh
Q 034900 3 NVGQELLQQDA---PQSNQYRFGFHQPPLNS---VNHLHLHCLALPFIPRWKHVKYLSLGPL-----GGFIEAEKLLEKI 71 (79)
Q Consensus 3 ~vg~~~l~~~~---~~~~~~r~GfH~pPf~S---v~HLHlHvi~~~~~s~~~~~ky~~~s~~-----~~F~~~d~vi~~L 71 (79)
++.+.++..-+ .+.-.+.+|||.-|+++ =.|+|+|......++ ..+.||...-.+ -...+.|++-++|
T Consensus 248 ~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~-~t~~k~~~g~e~~~~e~~~~~~pEeaA~~L 326 (338)
T COG1085 248 EILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRS-ATKLKFLAGYEMGAGEFIRDVTPEEAAERL 326 (338)
T ss_pred HHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEccccccc-ccccceeeeeecccceeeccCCHHHHHHHH
Confidence 44455555432 22336999999999983 344555544422221 122333321111 1246888888888
Q ss_pred ccCC
Q 034900 72 KPLS 75 (79)
Q Consensus 72 ~~~g 75 (79)
++..
T Consensus 327 R~~~ 330 (338)
T COG1085 327 RERS 330 (338)
T ss_pred HHhh
Confidence 8654
No 26
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=50.47 E-value=19 Score=25.13 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=22.3
Q ss_pred CCcceeeeecCCCCCCcc---eeeeeeecCcccccceeeeccCCCc-cce---ecHHHHHHHhc
Q 034900 16 SNQYRFGFHQPPLNSVNH---LHLHCLALPFIPRWKHVKYLSLGPL-GGF---IEAEKLLEKIK 72 (79)
Q Consensus 16 ~~~~r~GfH~pPf~Sv~H---LHlHvi~~~~~s~~~~~ky~~~s~~-~~F---~~~d~vi~~L~ 72 (79)
..++-+|.|..|++.-+. +|+|.-- |.+-.-..-||-.+.-. +.+ .+.|+.-+.|+
T Consensus 92 ~~pY~m~ihqaP~~~~~~~~~fH~H~e~-~~ir~~~i~k~~vG~e~l~~~~~d~~pE~~a~~Lr 154 (166)
T PF02744_consen 92 SFPYNMGIHQAPVNGEDPEHWFHPHFEP-PHIRSENIGKFEVGLEILPGRLRDETPEQAAALLR 154 (166)
T ss_dssp ---EEEEEE---SSSS--TT--EEEEE---BESSTTEB----THHHHT-EEESS-HHHHHHHHH
T ss_pred CCCCchhhhcCCCCcccchhhhhccccc-ccccccccceeeeeHhhhhhhhcccCHHHHHHHHh
Confidence 357999999999998754 8888765 43322223355542111 112 34555555565
No 27
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=42.61 E-value=13 Score=26.38 Aligned_cols=11 Identities=45% Similarity=0.872 Sum_probs=9.8
Q ss_pred CCcceeeeeee
Q 034900 30 SVNHLHLHCLA 40 (79)
Q Consensus 30 Sv~HLHlHvi~ 40 (79)
+|.|+|.|++-
T Consensus 95 TVpHvHvHIlP 105 (150)
T KOG3379|consen 95 TVPHVHVHILP 105 (150)
T ss_pred ccceeEEEEcc
Confidence 89999999985
No 28
>PF06528 Phage_P2_GpE: Phage P2 GpE; InterPro: IPR009493 This entry is represented by Burkholderia phage phiE202, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.
Probab=37.53 E-value=11 Score=21.09 Aligned_cols=10 Identities=40% Similarity=0.846 Sum_probs=7.1
Q ss_pred cceeeeecCC
Q 034900 18 QYRFGFHQPP 27 (79)
Q Consensus 18 ~~r~GfH~pP 27 (79)
+.-.=|||||
T Consensus 3 DiA~~FhW~P 12 (39)
T PF06528_consen 3 DIAWVFHWPP 12 (39)
T ss_pred ceeeecCCCH
Confidence 3455689998
No 29
>PF07103 DUF1365: Protein of unknown function (DUF1365); InterPro: IPR010775 This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.68 E-value=20 Score=26.63 Aligned_cols=11 Identities=36% Similarity=0.909 Sum_probs=10.1
Q ss_pred eeecCCCCCCc
Q 034900 22 GFHQPPLNSVN 32 (79)
Q Consensus 22 GfH~pPf~Sv~ 32 (79)
-||+.||++|+
T Consensus 157 ~FHVSPF~~~~ 167 (254)
T PF07103_consen 157 AFHVSPFNPMD 167 (254)
T ss_pred eeeECCCCCCC
Confidence 69999999997
No 30
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=29.11 E-value=50 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=23.4
Q ss_pred CCCcceeeeecCCC---CCCcceeeeeeecC
Q 034900 15 QSNQYRFGFHQPPL---NSVNHLHLHCLALP 42 (79)
Q Consensus 15 ~~~~~r~GfH~pPf---~Sv~HLHlHvi~~~ 42 (79)
+.+..-+||-.|.| .+|.=.|||-|+.+
T Consensus 149 nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD 179 (232)
T TIGR01252 149 NVTGTIVGFWTPAYAKGINVAGYHLHFISED 179 (232)
T ss_pred ccEEEEEEEecchhccccCCceEEEEEecCC
Confidence 34567899999999 56999999999955
No 31
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=21.69 E-value=1.4e+02 Score=24.59 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhCC-----CCCcceeeeecCCCCCCcceeeeeeec
Q 034900 2 LNVGQELLQQDAP-----QSNQYRFGFHQPPLNSVNHLHLHCLAL 41 (79)
Q Consensus 2 ~~vg~~~l~~~~~-----~~~~~r~GfH~pPf~Sv~HLHlHvi~~ 41 (79)
.+.+++.+++... +.-+|.+.||. .-+|=|+|+++.
T Consensus 99 rdAARefA~E~FgsG~~G~~~dYV~AlH~----D~dHPHVHLvVn 139 (446)
T PRK13863 99 YAASREWAAEMFGSGAGGGRYNYLTAFHI----DRDHPHLHVVVN 139 (446)
T ss_pred HHHHHHHHHHHhCCCCCCCceeEEEEEec----CCCCCeEEEEEE
Confidence 3456666766532 22378999997 558999999984
No 32
>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]
Probab=20.95 E-value=40 Score=27.27 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=26.2
Q ss_pred cCCCCCCcceeeeeeecCcccccceeeeccCCCccce---ecHHHHHHHh
Q 034900 25 QPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGF---IEAEKLLEKI 71 (79)
Q Consensus 25 ~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F---~~~d~vi~~L 71 (79)
.|||.|.+++ +|++++.++++.=.|.--.. +|= ..+.|+|+.|
T Consensus 260 yPPFYS~hg~---aispgMk~rI~~gqy~FP~p-EWs~VSe~aKdlIR~L 305 (400)
T KOG0604|consen 260 YPPFYSNHGL---AISPGMKRRIRTGQYEFPEP-EWSCVSEAAKDLIRKL 305 (400)
T ss_pred CCcccccCCc---cCChhHHhHhhccCccCCCh-hHhHHHHHHHHHHHHH
Confidence 5999999984 78888877665444422111 232 3455666655
No 33
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=20.44 E-value=84 Score=22.09 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=13.0
Q ss_pred cceecHHHHHHHhccCCC
Q 034900 59 GGFIEAEKLLEKIKPLSS 76 (79)
Q Consensus 59 ~~F~~~d~vi~~L~~~g~ 76 (79)
..|-.+.++|++|+++|.
T Consensus 45 ~lypdv~~iL~~L~~~gv 62 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGV 62 (169)
T ss_dssp ---TTHHHHHHHHHHCT-
T ss_pred EeCcCHHHHHHHHHHCCC
Confidence 468999999999999774
Done!