Query 034900
Match_columns 79
No_of_seqs 103 out of 178
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 12:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sp4_A Aprataxin-like protein; 99.5 3.9E-16 1.3E-20 112.3 0.1 46 18-65 104-150 (204)
2 3bl9_A Scavenger mRNA-decappin 99.5 2.5E-14 8.6E-19 107.9 5.1 66 1-76 208-274 (301)
3 1vlr_A MRNA decapping enzyme; 99.4 5.5E-14 1.9E-18 108.0 5.1 66 1-76 255-321 (350)
4 4egu_A Histidine triad (HIT) p 98.0 2.5E-06 8.7E-11 54.3 2.4 46 3-48 68-115 (119)
5 3n1s_A HIT-like protein HINT; 97.8 1.7E-05 5.7E-10 50.9 3.6 43 2-44 66-110 (119)
6 1xqu_A HIT family hydrolase; p 97.8 2.8E-05 9.5E-10 52.1 4.8 40 2-41 98-139 (147)
7 3o1c_A Histidine triad nucleot 97.6 3.3E-05 1.1E-09 49.9 2.7 40 2-42 78-119 (126)
8 3r6f_A HIT family protein; str 97.5 0.00013 4.3E-09 47.6 4.9 36 3-40 65-100 (135)
9 3oj7_A Putative histidine tria 97.5 8.7E-05 3E-09 47.0 4.0 40 3-44 71-112 (117)
10 1fit_A FragIle histidine prote 97.2 0.00021 7.1E-09 46.9 3.2 25 16-40 75-101 (147)
11 3o0m_A HIT family protein; ssg 97.0 0.0011 3.6E-08 43.8 5.2 27 14-40 80-108 (149)
12 3ksv_A Uncharacterized protein 97.0 0.001 3.6E-08 44.2 5.2 38 3-40 72-113 (149)
13 1gup_A Galactose-1-phosphate u 97.0 0.0019 6.4E-08 48.2 6.6 57 18-75 275-339 (348)
14 2eo4_A 150AA long hypothetical 96.9 0.00051 1.7E-08 45.1 2.8 25 16-40 75-101 (149)
15 3ano_A AP-4-A phosphorylase; d 96.9 0.0012 4E-08 47.1 4.5 35 5-40 136-173 (218)
16 1y23_A HIT, histidine triad pr 96.6 0.0011 3.7E-08 43.0 2.4 24 17-40 82-107 (145)
17 3l7x_A SMU.412C, putative HIT- 96.4 0.0037 1.3E-07 42.7 4.5 25 16-40 112-138 (173)
18 3lb5_A HIT-like protein involv 96.4 0.0016 5.6E-08 43.8 2.6 25 16-40 104-130 (161)
19 1ems_A Nitfhit, NIT-fragIle hi 96.4 0.002 6.7E-08 48.3 3.0 25 16-40 371-397 (440)
20 1z84_A Galactose-1-phosphate u 96.3 0.0037 1.3E-07 46.8 4.3 54 17-76 288-350 (351)
21 3imi_A HIT family protein; str 95.9 0.0059 2E-07 40.0 3.4 25 16-40 85-111 (147)
22 3p0t_A Uncharacterized protein 95.7 0.0044 1.5E-07 40.0 1.8 20 20-40 83-102 (138)
23 2oik_A Histidine triad (HIT) p 94.4 0.033 1.1E-06 36.5 3.3 20 18-40 84-103 (154)
24 3ohe_A Histidine triad (HIT) p 93.6 0.053 1.8E-06 35.5 3.0 32 4-40 65-96 (137)
25 3nrd_A Histidine triad (HIT) p 93.2 0.068 2.3E-06 34.8 3.1 32 4-40 67-98 (135)
26 3i24_A HIT family hydrolase; s 91.7 0.14 4.7E-06 34.2 3.1 33 3-40 64-96 (149)
27 3i4s_A Histidine triad protein 89.3 0.29 1E-05 32.6 3.1 20 18-40 82-101 (149)
28 2nlv_A XISI protein-like; XISI 68.8 1.8 6.1E-05 28.3 1.2 23 3-26 79-101 (112)
29 2nwv_A XISI protein-like; YP_3 67.9 1.9 6.5E-05 28.2 1.2 23 3-26 81-103 (114)
30 3d7q_A XISI protein-like; stru 64.8 1.8 6.1E-05 28.3 0.6 22 4-26 80-101 (112)
31 2nvm_A FDXN element excision c 61.7 3 0.0001 27.8 1.3 23 3-26 93-115 (126)
32 1l2m_A REP protein; A+B fold, 51.2 10 0.00035 24.7 2.5 45 31-77 50-107 (118)
33 1z84_A Galactose-1-phosphate u 42.9 11 0.00037 27.9 1.8 17 30-46 181-197 (351)
34 1xv2_A ALDC, hypothetical prot 25.4 37 0.0013 24.2 2.1 27 17-43 155-184 (237)
35 3t3p_B Integrin beta-3; integr 20.5 65 0.0022 25.3 2.7 30 2-31 132-167 (472)
No 1
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.55 E-value=3.9e-16 Score=112.28 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=44.4
Q ss_pred cceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCc-cceecHH
Q 034900 18 QYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPL-GGFIEAE 65 (79)
Q Consensus 18 ~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~-~~F~~~d 65 (79)
.+++|||++| ||.|||||||++||.|.++|.|.++|||. ++|++.+
T Consensus 104 ~i~~GfHa~P--Sm~HLHLHVIS~Df~s~~lK~kkH~NSF~T~fFv~~~ 150 (204)
T 3sp4_A 104 YIKVGFHAGP--SMNNLHLHIMTLDHVSPSLKNSAHYISFTSPFFVKID 150 (204)
T ss_dssp TEEEEEESSC--SSSSCCEEEEESCCCCTTCCSHHHHHHHHSTTEEETT
T ss_pred eEeccCCCCC--cccceeEEEeccCCCChhhCccchhcccChhhhccch
Confidence 7899999999 99999999999999999999999999998 8999998
No 2
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=99.48 E-value=2.5e-14 Score=107.91 Aligned_cols=66 Identities=27% Similarity=0.379 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCccceecHHHHHHHhccCCC
Q 034900 1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSS 76 (79)
Q Consensus 1 M~~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~g~ 76 (79)
|.++|++++++. +.+..++|+|||+|| |+.|||||+++.+|.+.+.+.+. +.|. |+||++|+..|+
T Consensus 208 M~~~~~~~i~~~y~~~~~~~rlgfHy~P--S~yHLHlHvis~~~~s~~~~~~k------A~lL--ddVI~~Le~~g~ 274 (301)
T 3bl9_A 208 ILHQGQEAILQRYRMKGDHLRVYLHYLP--SYYHLHVHFTALGFEAPGSGVER------AHLL--AEVIENLECDPR 274 (301)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEESSC--SSSSCEEEEEETTSCCTTCBTTT------EEEH--HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCChHHeEEEecCCC--CcceEEEEEEecCCCCCccccce------eeeH--HHHHHHHHhCCc
Confidence 678999999987 777789999999999 99999999999999887765433 3455 999999998775
No 3
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=99.45 E-value=5.5e-14 Score=107.95 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhh-CCCCCcceeeeecCCCCCCcceeeeeeecCcccccceeeeccCCCccceecHHHHHHHhccCCC
Q 034900 1 MLNVGQELLQQD-APQSNQYRFGFHQPPLNSVNHLHLHCLALPFIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSS 76 (79)
Q Consensus 1 M~~vg~~~l~~~-~~~~~~~r~GfH~pPf~Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~g~ 76 (79)
|.++|++++++. +.+..++|+|||+|| |+.|||||+|+.+|.+.+.+.+. ++|. |+||++|+..|+
T Consensus 255 M~~~~~~ii~~~yg~~~~~lRlgfHy~P--S~yHLHlHvis~~~~s~~l~~~K------A~lL--ddVI~nLe~~g~ 321 (350)
T 1vlr_A 255 ILREGQEAILKRYQVTGDRLRVYLHYLP--SYYHLHVHFTALGFEAPGSGVER------AHLL--AQVIENLECDPK 321 (350)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEESSC--SSSSCEEEEEETTSCCTTCBTTT------EEEH--HHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCChHHeEEEecCCC--CcceEEEEEEeccCCCCccccCe------eeeH--HHHHHHHHhCCC
Confidence 678999999987 777789999999999 99999999999999887765433 3455 999999998774
No 4
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=98.00 E-value=2.5e-06 Score=54.27 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCCCCcceeeeecCC--CCCCcceeeeeeecCcccccc
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQPP--LNSVNHLHLHCLALPFIPRWK 48 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~pP--f~Sv~HLHlHvi~~~~~s~~~ 48 (79)
+++++++++.+.+...+++|+|..| -.||.|||+|+|....++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~~~~~ 115 (119)
T 4egu_A 68 VVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYE 115 (119)
T ss_dssp HHHHHHHHHHTHHHHCEEEEEEETTTTTCCSCSCCEEEEESSCCCCGG
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCCCCCCCCcCEEEEEEeCCcccCccC
Confidence 4566766665433346999999887 468999999999976665543
No 5
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=97.80 E-value=1.7e-05 Score=50.94 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhCCCCCcceeeeecCC--CCCCcceeeeeeecCcc
Q 034900 2 LNVGQELLQQDAPQSNQYRFGFHQPP--LNSVNHLHLHCLALPFI 44 (79)
Q Consensus 2 ~~vg~~~l~~~~~~~~~~r~GfH~pP--f~Sv~HLHlHvi~~~~~ 44 (79)
.+++++++++.+.+.+.+++|++..| -.+|.|||+|+|....+
T Consensus 66 ~~~~~~v~~~~~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~ 110 (119)
T 3n1s_A 66 ITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_dssp HHHHHHHHHHTTCTTTCEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred HHHHHHHHHHhCCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence 35677888776666678999999865 67999999999974433
No 6
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=97.79 E-value=2.8e-05 Score=52.13 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeeec
Q 034900 2 LNVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLAL 41 (79)
Q Consensus 2 ~~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~~ 41 (79)
.+++++++++.+.+...+++|+|..|+ .+|.|||+|+|..
T Consensus 98 ~~~~~~v~~~~~~~~~gyni~~n~g~~aGq~v~HlHlHiiP~ 139 (147)
T 1xqu_A 98 HKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGG 139 (147)
T ss_dssp HHHHHHHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEES
T ss_pred HHHHHHHHHHhCCCCCCEEEEEecCcccCCCccEEEEEEeCC
Confidence 356777777766444579999999998 7899999999963
No 7
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=97.60 E-value=3.3e-05 Score=49.87 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeeecC
Q 034900 2 LNVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLALP 42 (79)
Q Consensus 2 ~~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~~~ 42 (79)
.+++++++++.+. ...+++|++..|. .+|.|||+|+|...
T Consensus 78 ~~~~~~~~~~~~~-~~g~ni~~n~g~~agq~v~HlH~Hiipr~ 119 (126)
T 3o1c_A 78 MIVGKKCAADLGL-KKGYRMVVNEGSDGGQSVYHVHLHVLGGR 119 (126)
T ss_dssp HHHHHHHHHHTTC-TTCEEEECCCHHHHTCCSSSCCEEEEESS
T ss_pred HHHHHHHHHHhCC-CCCeEEEEecCCccCCccCEeEEEEeCCc
Confidence 3567777776653 2479999998885 79999999999743
No 8
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=97.54 E-value=0.00013 Score=47.60 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
++++++.+..+. ..+++|+|..|.++|.|||+|+|-
T Consensus 65 ~~~~~v~~~~~~--~~~ni~~n~g~gq~v~HlH~HiiP 100 (135)
T 3r6f_A 65 DTIRHLVQKFGF--ERYNILQNNGNHQEVFHVHFHVIP 100 (135)
T ss_dssp HHHHHHHHHHTC--CSEEEECCSSSSCSSSSCCEEEEE
T ss_pred HHHHHHHHHhCC--CCeEEEEEcCCCCCccEEEEEEec
Confidence 455666555544 359999998889999999999996
No 9
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=97.53 E-value=8.7e-05 Score=47.00 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCCCcceeeeecCCC--CCCcceeeeeeecCcc
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQPPL--NSVNHLHLHCLALPFI 44 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~pPf--~Sv~HLHlHvi~~~~~ 44 (79)
+++++++++ +.+ +.+++|+|..|. .||.|||+|+|....+
T Consensus 71 ~~~~~~~~~-~~~-~g~ni~~n~g~~agq~v~H~H~Hiipr~~~ 112 (117)
T 3oj7_A 71 YKVSLIGKK-ECP-EGYRVVNNIGEDAGQTVKHIHFHILGGKKL 112 (117)
T ss_dssp HHHHHHHHH-HCT-TCEEEECCCSTTTTCCSSSCCEEEEESSCC
T ss_pred HHHHHHHHh-cCC-CCeEEEEcCCCCCCeeeeEEEEEEeCCCCC
Confidence 456666665 333 379999998774 7899999999984433
No 10
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=97.24 E-value=0.00021 Score=46.87 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=22.1
Q ss_pred CCcceeeeecCC--CCCCcceeeeeee
Q 034900 16 SNQYRFGFHQPP--LNSVNHLHLHCLA 40 (79)
Q Consensus 16 ~~~~r~GfH~pP--f~Sv~HLHlHvi~ 40 (79)
...+++|+|..| .++|.|||+|+|.
T Consensus 75 ~~~~ni~~n~g~~agq~v~HlH~HiiP 101 (147)
T 1fit_A 75 GTSLTFSMQDGPEAGQTVKHVHVHVLP 101 (147)
T ss_dssp CSEEEEEECCSGGGTCCSSSCCEEEEE
T ss_pred CCCEEEEEecCCccCCCccEEEEEEEC
Confidence 347999999987 5799999999998
No 11
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=97.05 E-value=0.0011 Score=43.79 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCCCcceeeeecCC--CCCCcceeeeeee
Q 034900 14 PQSNQYRFGFHQPP--LNSVNHLHLHCLA 40 (79)
Q Consensus 14 ~~~~~~r~GfH~pP--f~Sv~HLHlHvi~ 40 (79)
.+...+++|+|..| -++|.|||+|+|.
T Consensus 80 ~~~~~~ni~~n~g~~aGq~v~HlHiHiiP 108 (149)
T 3o0m_A 80 LHADGNNIAINDGKAAFQTVFHIHLHVVP 108 (149)
T ss_dssp TCCSEEEEECCCSGGGTCCSSSCCEEEEE
T ss_pred CCCCceEEEEecCCCCCCccceEEEEEEC
Confidence 44567999999876 4789999999998
No 12
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=97.04 E-value=0.001 Score=44.23 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHHHHHhh--CCCCCcceeeeecCC--CCCCcceeeeeee
Q 034900 3 NVGQELLQQD--APQSNQYRFGFHQPP--LNSVNHLHLHCLA 40 (79)
Q Consensus 3 ~vg~~~l~~~--~~~~~~~r~GfH~pP--f~Sv~HLHlHvi~ 40 (79)
++++++.+.. ..+...+++|++..| -.+|.|||+|+|-
T Consensus 72 ~~~~~v~~~l~~~~~~~g~ni~~n~g~~aGq~v~HlHiHiiP 113 (149)
T 3ksv_A 72 VLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIP 113 (149)
T ss_dssp HHHHHHHHHHHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEecCcccCCCCCEEEEEEEe
Confidence 3445544443 233457999999888 4789999999996
No 13
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=96.97 E-value=0.0019 Score=48.18 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=35.8
Q ss_pred cceeeeecCCCC----CCcceeeeeeecCcccccceeeeccCCCc--cc--eecHHHHHHHhccCC
Q 034900 18 QYRFGFHQPPLN----SVNHLHLHCLALPFIPRWKHVKYLSLGPL--GG--FIEAEKLLEKIKPLS 75 (79)
Q Consensus 18 ~~r~GfH~pPf~----Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~--~~--F~~~d~vi~~L~~~g 75 (79)
.|++|||..|++ ++.|||+|+|. |.+..-...+|.....+ +. -.+.|++.++|++..
T Consensus 275 ~Yn~g~~~~p~~g~~q~v~HlHiHiiP-pl~R~~~~~~~~~g~e~~~~~~~~~~pE~~A~~Lr~~~ 339 (348)
T 1gup_A 275 PYSMGWHGAPFNGEENQHWQLHAHFYP-PLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLRAVS 339 (348)
T ss_dssp CEEEEEECCCSSSSCCTTCCCEEEEEC-CBCSSSSCBCCCCTHHHHTCCEESSCHHHHHHHHHTSC
T ss_pred CeEEEEEeCCCCCCCCcccEEEEEEec-chhccCCcccceeeEecccCCCCCCCHHHHHHHHHhhh
Confidence 799999999995 79999999997 21111111233321000 11 146889999998654
No 14
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=96.92 E-value=0.00051 Score=45.06 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCcceeeeecCCC--CCCcceeeeeee
Q 034900 16 SNQYRFGFHQPPL--NSVNHLHLHCLA 40 (79)
Q Consensus 16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~ 40 (79)
...+++|+|..|. ++|.|||+|+|.
T Consensus 75 ~~~~ni~~n~g~~~gq~v~HlHiHviP 101 (149)
T 2eo4_A 75 ADGLRLLTNIGRSAGQVIFHLHVHIIP 101 (149)
T ss_dssp CSEEEEECCCSGGGTCCSCSCCEEEEE
T ss_pred CCCeEEEEecCcCCCCCcCEEEEEEEC
Confidence 3579999998774 789999999995
No 15
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=96.87 E-value=0.0012 Score=47.10 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=26.0
Q ss_pred HHHHHHhhCCCCCcceeeeecCCC--CCC-cceeeeeee
Q 034900 5 GQELLQQDAPQSNQYRFGFHQPPL--NSV-NHLHLHCLA 40 (79)
Q Consensus 5 g~~~l~~~~~~~~~~r~GfH~pPf--~Sv-~HLHlHvi~ 40 (79)
+.++|++... ...+++|++..|. .+| .|||+|+|.
T Consensus 136 v~~~l~~~~~-~~g~ni~~n~G~~aGq~V~~HlHiHIIP 173 (218)
T 3ano_A 136 AIRVIKNVSR-PHGFNVGLNLGTSAGGSLAEHLHVHVVP 173 (218)
T ss_dssp HHHHHHHHCC-CSEEEEEEEESGGGTCTTTTSCCEEEEE
T ss_pred HHHHHHHhcC-CCCEEEEEecCcccCCcccCEEEEEEEc
Confidence 3444555432 3479999998876 588 999999998
No 16
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=96.58 E-value=0.0011 Score=43.00 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.7
Q ss_pred CcceeeeecCC--CCCCcceeeeeee
Q 034900 17 NQYRFGFHQPP--LNSVNHLHLHCLA 40 (79)
Q Consensus 17 ~~~r~GfH~pP--f~Sv~HLHlHvi~ 40 (79)
..+++|+|..| .++|.|||+|+|.
T Consensus 82 ~~~ni~~n~g~~~g~~v~HlH~HiiP 107 (145)
T 1y23_A 82 IGLNTLNNNGEKAGQSVFHYHMHIIP 107 (145)
T ss_dssp SEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred CCEEEEEcCCcCCCCCcCEEEEEEEc
Confidence 47999999766 4789999999996
No 17
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=96.44 E-value=0.0037 Score=42.71 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.7
Q ss_pred CCcceeeeecCCC--CCCcceeeeeee
Q 034900 16 SNQYRFGFHQPPL--NSVNHLHLHCLA 40 (79)
Q Consensus 16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~ 40 (79)
...+++|++..|. .+|.|||+|+|-
T Consensus 112 ~~g~ni~~n~g~~aGq~V~HlHiHiIP 138 (173)
T 3l7x_A 112 ADGLNIINNNEETAGQTVFHAHVHLVP 138 (173)
T ss_dssp CSEEEEEECCSGGGTCCSCSCCEEEEE
T ss_pred CCCEEEEEecCcccCCCcCEEEEEEEe
Confidence 3579999998885 789999999997
No 18
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=96.42 E-value=0.0016 Score=43.83 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCcceeeeecCCC--CCCcceeeeeee
Q 034900 16 SNQYRFGFHQPPL--NSVNHLHLHCLA 40 (79)
Q Consensus 16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~ 40 (79)
...+++|++..|. ++|.|||+|+|-
T Consensus 104 ~~g~ni~~n~g~~aGq~V~HlHiHiiP 130 (161)
T 3lb5_A 104 ADGITVMQFNEAASQQTVYHLHFHIIP 130 (161)
T ss_dssp CSEEEEEEEESGGGTCCSCSCCEEEEE
T ss_pred CCCEEEEEecCcccCCCCCEEEEEEEc
Confidence 3579999998774 789999999996
No 19
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=96.37 E-value=0.002 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCcceeeeecCC--CCCCcceeeeeee
Q 034900 16 SNQYRFGFHQPP--LNSVNHLHLHCLA 40 (79)
Q Consensus 16 ~~~~r~GfH~pP--f~Sv~HLHlHvi~ 40 (79)
...+++|+|..| .++|.|||+|+|.
T Consensus 371 ~~~~n~~~~~g~~~gq~v~HlH~Hiip 397 (440)
T 1ems_A 371 VTSTTICVQDGKDAGQTVPHVHIHILP 397 (440)
T ss_dssp CSEEEEECCCSGGGTCCSSSCCEEEEE
T ss_pred CCCeEEEEecCCCCCCCccEEEEEEeC
Confidence 357999999988 4789999999998
No 20
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=96.33 E-value=0.0037 Score=46.84 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=35.0
Q ss_pred CcceeeeecCCCC------CCcceeeeeeecCcccccceeeeccCCCccce---ecHHHHHHHhccCCC
Q 034900 17 NQYRFGFHQPPLN------SVNHLHLHCLALPFIPRWKHVKYLSLGPLGGF---IEAEKLLEKIKPLSS 76 (79)
Q Consensus 17 ~~~r~GfH~pPf~------Sv~HLHlHvi~~~~~s~~~~~ky~~~s~~~~F---~~~d~vi~~L~~~g~ 76 (79)
..+++|+|..|+. ++.|||+|++. .+. .... |... .+.+ .+.|++.++|++...
T Consensus 288 ~~yn~~~n~gp~~g~~~~q~v~HlHiHiiP-R~~-~~~G--fe~~--~~~~i~~~~pE~~A~~LR~~~~ 350 (351)
T 1z84_A 288 PPYNYMIHTSPLKVTESQLPYTHWFLQIVP-QLS-GVGG--FEIG--TGCYINPVFPEDVAKVMREVSL 350 (351)
T ss_dssp CCEEEEEECCCTTCCGGGGGGCCCEEEEEE-CCC-CCCH--HHHH--HSCCEESSCHHHHHHHHHHCCC
T ss_pred CCEEEEEeCCCccCCCCCCccceEEEEEEc-cCC-CcCc--cccc--cCcccCCccHHHHHHHHHhccC
Confidence 3799999999986 78899999997 110 0000 1100 0122 578999999987543
No 21
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=95.95 E-value=0.0059 Score=40.03 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCcceeeeecCCC--CCCcceeeeeee
Q 034900 16 SNQYRFGFHQPPL--NSVNHLHLHCLA 40 (79)
Q Consensus 16 ~~~~r~GfH~pPf--~Sv~HLHlHvi~ 40 (79)
...+++|+|..|. .+|.|||+|+|-
T Consensus 85 ~~~~ni~~n~g~~aGq~v~HlHiHiiP 111 (147)
T 3imi_A 85 PVGFNLLNNNGEKAGQTVFHFHLHLIP 111 (147)
T ss_dssp CSEEEEEEEESGGGTCCSSSCCEEEEE
T ss_pred CCCEEEEEeCCcccCCCcCEEEEEEeC
Confidence 3579999998774 689999999997
No 22
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=95.66 E-value=0.0044 Score=40.00 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=15.8
Q ss_pred eeeeecCCCCCCcceeeeeee
Q 034900 20 RFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 20 r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
++||.. .-++|.|||+|+|.
T Consensus 83 ~~n~~~-~gq~v~HlH~HiiP 102 (138)
T 3p0t_A 83 RSGLII-AGLEVPHLHVHVFP 102 (138)
T ss_dssp EEEEEE-CCSSCSSCCEEEEE
T ss_pred CCcEEE-CCcccCEEEEEEec
Confidence 566654 45799999999997
No 23
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=94.42 E-value=0.033 Score=36.47 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=15.9
Q ss_pred cceeeeecCCCCCCcceeeeeee
Q 034900 18 QYRFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 18 ~~r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
.++++ +.-++|.|||+|+|.
T Consensus 84 g~ni~---~~gq~v~HlHiHiiP 103 (154)
T 2oik_A 84 KINLA---SLGNMTPHVHWHVIP 103 (154)
T ss_dssp EEEEE---ECCSSSCSCEEEEEE
T ss_pred cEEhH---HhCCCCCEEEEEEeC
Confidence 46665 455799999999998
No 24
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=93.56 E-value=0.053 Score=35.49 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=21.3
Q ss_pred HHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900 4 VGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 4 vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
+++.+.+..+. +.+.+| ---++|.|||+|+|.
T Consensus 65 v~~~l~~~~~~--~~~N~~---~aGq~V~HlH~HviP 96 (137)
T 3ohe_A 65 LSEGMMELFGG--DKMNVA---ALGNMVPQLHLHHIV 96 (137)
T ss_dssp HHHHHHHHTTC--SEEEEE---ECCSSCCSCCEEEEE
T ss_pred HHHHHHHHhCC--CeEEEe---eccCcCCEEEEEEeC
Confidence 44443333344 357777 445789999999998
No 25
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=93.18 E-value=0.068 Score=34.80 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=20.9
Q ss_pred HHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900 4 VGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 4 vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
+++.+.+..+++ .+.+| .--++|.|||+|+|.
T Consensus 67 v~~~l~~~~~~~--~~N~~---~aGq~V~HlH~HviP 98 (135)
T 3nrd_A 67 VAAGLKKATGAE--KINIG---ALGNIVRQLHVHVIA 98 (135)
T ss_dssp HHHHHHHHHTCS--EEEEE---ECCSSCCSCCEEEEE
T ss_pred HHHHHHHhcCCC--eEEEe---eccCCCCEEEEEEec
Confidence 444443334443 46666 345789999999998
No 26
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=91.68 E-value=0.14 Score=34.16 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred HHHHHHHHhhCCCCCcceeeeecCCCCCCcceeeeeee
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
.+++.+.+..+++ .+.+| .--++|.|||+|+|.
T Consensus 64 ~va~al~~~~~~~--~~Ni~---~aGq~V~HlH~HvIP 96 (149)
T 3i24_A 64 AVAQLLEDNFSPD--KINIG---ALGNLVPQLHIHHIA 96 (149)
T ss_dssp HHHHHHHHHHCCS--EEEEE---ECCSSCCSCCEEEEE
T ss_pred HHHHHHHHhhCCC--eEEEh---hhhCCCCEEEEEEeC
Confidence 3444444444543 46677 255799999999998
No 27
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=89.27 E-value=0.29 Score=32.56 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=15.2
Q ss_pred cceeeeecCCCCCCcceeeeeee
Q 034900 18 QYRFGFHQPPLNSVNHLHLHCLA 40 (79)
Q Consensus 18 ~~r~GfH~pPf~Sv~HLHlHvi~ 40 (79)
.+.+| ---++|.|||+|+|.
T Consensus 82 g~N~~---~aGq~V~HlH~HvIP 101 (149)
T 3i4s_A 82 KLNIA---ALGNLVPQLHVHIIA 101 (149)
T ss_dssp EEEEE---ECCSSCCSCCEEEEE
T ss_pred eEEEe---ecCCcCCEEEEEEEC
Confidence 35555 344689999999998
No 28
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=68.80 E-value=1.8 Score=28.27 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCCCcceeeeecC
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQP 26 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~p 26 (79)
.+|.+|++ .|...++..+|||.|
T Consensus 79 gIa~eLv~-~GVpk~dIVLgF~~P 101 (112)
T 2nlv_A 79 NPAEELVM-MGVPREDIVLGLQAP 101 (112)
T ss_dssp CHHHHHHH-TTCCGGGEEETTSCG
T ss_pred cHHHHHHH-cCCCHHHEEEccCCc
Confidence 36777665 677778999999943
No 29
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=67.85 E-value=1.9 Score=28.23 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=17.1
Q ss_pred HHHHHHHHhhCCCCCcceeeeecC
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQP 26 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~p 26 (79)
.+|.+|++ .|...++..+|||.|
T Consensus 81 gIa~eLv~-~GVpk~dIVLgF~~P 103 (114)
T 2nwv_A 81 GIATELMR-LGVTNNDIVLAFHPP 103 (114)
T ss_dssp CHHHHHHH-TTCCGGGEEETTSCG
T ss_pred cHHHHHHH-cCCCHHHEEEccCCc
Confidence 36777665 677778999999943
No 30
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=64.76 E-value=1.8 Score=28.26 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=16.7
Q ss_pred HHHHHHHhhCCCCCcceeeeecC
Q 034900 4 VGQELLQQDAPQSNQYRFGFHQP 26 (79)
Q Consensus 4 vg~~~l~~~~~~~~~~r~GfH~p 26 (79)
+|.+|++ .|...++..+|||.|
T Consensus 80 Ia~eLv~-~GVpk~dIVLgF~~P 101 (112)
T 3d7q_A 80 IALELME-MGIDKQDIVIGFHTP 101 (112)
T ss_dssp HHHHHHT-TTCCGGGEEETTSCH
T ss_pred HHHHHHH-cCCCHHHEEEccCCc
Confidence 6777655 677778999999943
No 31
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=61.67 E-value=3 Score=27.82 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCCCcceeeeecC
Q 034900 3 NVGQELLQQDAPQSNQYRFGFHQP 26 (79)
Q Consensus 3 ~vg~~~l~~~~~~~~~~r~GfH~p 26 (79)
.++.+|++ .|...++..+|||.|
T Consensus 93 gIa~eLv~-~GIPk~DIVLgFh~P 115 (126)
T 2nvm_A 93 AIVDEMLV-AGIPQTDIILGFHHP 115 (126)
T ss_dssp HHHHHHHH-TTCCGGGEEETTSCG
T ss_pred hHHHHHHH-cCCCHHHEEEccCCc
Confidence 46777665 566678999999943
No 32
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=51.22 E-value=10 Score=24.69 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=27.9
Q ss_pred CcceeeeeeecC-------------cccccceeeeccCCCccceecHHHHHHHhccCCCC
Q 034900 31 VNHLHLHCLALP-------------FIPRWKHVKYLSLGPLGGFIEAEKLLEKIKPLSST 77 (79)
Q Consensus 31 v~HLHlHvi~~~-------------~~s~~~~~ky~~~s~~~~F~~~d~vi~~L~~~g~~ 77 (79)
..-+|+||+.+- ..++-+.--|++|- .-=+++.+|..++++.|.+
T Consensus 50 dG~pHlH~LiQ~~gk~~~~n~rfFDl~~p~~s~~fHPni--q~aksssdvk~Yi~Kdgd~ 107 (118)
T 1l2m_A 50 NGEPHLHILIQFEGKYNCTNQRFFDLVSPTRSAHFHPNI--QGAKSSSDVKSYIDKDGDV 107 (118)
T ss_dssp TSCEEEEEEEEEEEEEECCCTTSSCEECSSSSCEECCEE--EEECSCTHHHHHHHCCSSC
T ss_pred CCCeeeEEEEeecCceeccCCCcccccCCCCCCccCCCc--cccCChHHhhhhcccCCCE
Confidence 557899999821 11222222345532 1237899999999998865
No 33
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=42.87 E-value=11 Score=27.88 Aligned_cols=17 Identities=41% Similarity=0.774 Sum_probs=15.1
Q ss_pred CCcceeeeeeecCcccc
Q 034900 30 SVNHLHLHCLALPFIPR 46 (79)
Q Consensus 30 Sv~HLHlHvi~~~~~s~ 46 (79)
|+.|.|.++++.|+.+.
T Consensus 181 Sl~HpH~QI~a~~~~p~ 197 (351)
T 1z84_A 181 SMSHSHSQMMALPVVPP 197 (351)
T ss_dssp CCSSCEEEEEEESSCCH
T ss_pred CCcCccceeEecCcCCh
Confidence 89999999999998743
No 34
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=25.36 E-value=37 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=21.7
Q ss_pred CcceeeeecCCC---CCCcceeeeeeecCc
Q 034900 17 NQYRFGFHQPPL---NSVNHLHLHCLALPF 43 (79)
Q Consensus 17 ~~~r~GfH~pPf---~Sv~HLHlHvi~~~~ 43 (79)
+..-+||-.|.+ .+|.=.|||-|+.+-
T Consensus 155 ~GTivGF~tP~~~~Gi~v~G~HlHFisdDr 184 (237)
T 1xv2_A 155 RGAIVGFFTPELFHGVGSAGFHIHFADDER 184 (237)
T ss_dssp EEEEEEEEECGGGBTTBCSEEEEEEEETTS
T ss_pred EEEEEEEecchhhcccCCceeEEEEEcCCC
Confidence 346789999998 568888999999663
No 35
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=20.46 E-value=65 Score=25.31 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCCCcceeeee------cCCCCCC
Q 034900 2 LNVGQELLQQDAPQSNQYRFGFH------QPPLNSV 31 (79)
Q Consensus 2 ~~vg~~~l~~~~~~~~~~r~GfH------~pPf~Sv 31 (79)
.++|.+|+++...-..++|+||= .-||.++
T Consensus 132 k~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~ 167 (472)
T 3t3p_B 132 QNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYI 167 (472)
T ss_dssp TTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCC
T ss_pred HHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccC
Confidence 56788888887655568999985 3466553
Done!