Query 034901
Match_columns 79
No_of_seqs 15 out of 17
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 07:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05057 DUF676: Putative seri 82.2 0.29 6.2E-06 34.4 -0.8 12 14-25 81-92 (217)
2 PRK05886 yajC preprotein trans 81.7 0.71 1.5E-05 31.7 1.0 30 27-56 5-34 (109)
3 TIGR00739 yajC preprotein tran 73.6 2.8 6.1E-05 26.9 2.0 31 28-58 5-35 (84)
4 COG1862 YajC Preprotein transl 71.8 2.6 5.6E-05 28.4 1.5 34 25-58 8-41 (97)
5 PF15141 DUF4574: Domain of un 70.6 1.9 4.2E-05 28.9 0.7 33 20-52 1-35 (84)
6 PF02699 YajC: Preprotein tran 68.9 1.3 2.9E-05 28.0 -0.3 32 27-58 3-34 (82)
7 PRK05585 yajC preprotein trans 67.1 3.4 7.4E-05 27.7 1.3 34 27-60 19-52 (106)
8 PF14283 DUF4366: Domain of un 58.4 6.4 0.00014 29.5 1.5 19 34-52 172-191 (218)
9 PRK06531 yajC preprotein trans 53.7 13 0.00028 25.6 2.3 28 28-56 5-32 (113)
10 smart00318 SNc Staphylococcal 51.7 27 0.00059 22.2 3.5 24 25-48 90-113 (138)
11 PF04612 T2SM: Type II secreti 51.4 4.9 0.00011 26.4 0.0 28 29-56 21-48 (160)
12 PF07819 PGAP1: PGAP1-like pro 48.5 4.1 8.8E-05 29.2 -0.8 12 15-26 89-100 (225)
13 PRK07718 fliL flagellar basal 47.8 8.2 0.00018 26.3 0.6 26 30-55 14-39 (142)
14 PF05728 UPF0227: Uncharacteri 47.7 3.7 8.1E-05 29.2 -1.1 11 14-24 62-72 (187)
15 PLN02965 Probable pheophorbida 43.5 6 0.00013 26.9 -0.6 11 14-24 75-85 (255)
16 COG1525 Micrococcal nuclease ( 41.2 33 0.00072 23.5 2.8 46 24-69 127-172 (192)
17 PRK06518 hypothetical protein; 40.8 40 0.00087 24.3 3.3 44 25-68 110-156 (177)
18 PRK08775 homoserine O-acetyltr 38.4 6.4 0.00014 28.5 -1.1 10 14-23 141-150 (343)
19 PRK11126 2-succinyl-6-hydroxy- 37.6 6.2 0.00013 25.8 -1.2 10 14-23 69-78 (242)
20 cd00175 SNc Staphylococcal nuc 37.4 62 0.0013 20.2 3.4 22 26-47 83-104 (129)
21 COG3389 Uncharacterized protei 37.2 16 0.00034 29.3 0.8 24 25-48 89-112 (277)
22 PLN02211 methyl indole-3-aceta 36.6 7.9 0.00017 27.5 -0.8 12 14-25 90-101 (273)
23 PF11760 CbiG_N: Cobalamin syn 36.5 22 0.00048 23.4 1.3 27 13-39 48-74 (84)
24 PF13132 DUF3950: Domain of un 36.4 19 0.00041 20.5 0.9 10 25-34 13-22 (30)
25 PF09819 ABC_cobalt: ABC-type 33.2 14 0.0003 25.6 -0.0 23 29-51 44-66 (129)
26 PF13706 PepSY_TM_3: PepSY-ass 31.4 21 0.00045 19.7 0.5 18 29-49 19-36 (37)
27 PRK07581 hypothetical protein; 30.3 9.6 0.00021 27.2 -1.3 12 14-25 127-138 (339)
28 TIGR02240 PHA_depoly_arom poly 29.9 10 0.00022 26.0 -1.2 11 14-24 94-104 (276)
29 PF11654 DUF2665: Protein of u 29.6 12 0.00026 22.8 -0.7 13 33-45 13-25 (47)
30 PTZ00046 rifin; Provisional 28.9 14 0.00029 30.2 -0.8 35 17-53 141-175 (358)
31 KOG1454 Predicted hydrolase/ac 28.9 12 0.00025 28.5 -1.1 17 14-30 131-147 (326)
32 PF13906 AA_permease_C: C-term 28.3 31 0.00067 20.6 0.9 15 29-43 32-46 (51)
33 PF14960 ATP_synth_reg: ATP sy 28.3 31 0.00068 21.2 0.9 25 23-47 22-48 (49)
34 TIGR03343 biphenyl_bphD 2-hydr 26.2 17 0.00037 24.4 -0.6 12 14-25 104-115 (282)
35 PRK00888 ftsB cell division pr 26.1 27 0.00058 23.1 0.4 16 32-47 9-24 (105)
36 COG1102 Cmk Cytidylate kinase 25.7 37 0.0008 25.7 1.1 48 26-74 79-136 (179)
37 PF13396 PLDc_N: Phospholipase 24.9 91 0.002 17.0 2.4 23 24-46 17-46 (46)
38 COG2021 MET2 Homoserine acetyl 24.4 15 0.00033 30.0 -1.2 16 11-26 147-162 (368)
39 PF09406 DUF2004: Protein of u 24.1 30 0.00064 22.6 0.3 23 52-76 2-28 (106)
40 PRK11071 esterase YqiA; Provis 23.5 17 0.00037 24.8 -1.0 11 14-24 64-74 (190)
41 PF00561 Abhydrolase_1: alpha/ 23.4 14 0.00031 23.2 -1.3 10 14-23 47-56 (230)
42 PRK11273 glpT sn-glycerol-3-ph 23.3 31 0.00068 25.6 0.3 26 29-54 420-445 (452)
43 PRK10580 proY putative proline 22.6 24 0.00052 26.9 -0.4 26 29-54 432-457 (457)
44 PF00756 Esterase: Putative es 22.5 12 0.00027 25.1 -1.8 11 13-23 117-127 (251)
45 PF09796 QCR10: Ubiquinol-cyto 21.4 31 0.00066 21.9 -0.0 19 26-44 14-32 (64)
46 TIGR03056 bchO_mg_che_rel puta 21.2 24 0.00052 23.1 -0.6 10 14-23 98-107 (278)
47 TIGR03695 menH_SHCHC 2-succiny 21.0 19 0.00041 22.1 -1.0 10 14-23 73-82 (251)
48 PLN02733 phosphatidylcholine-s 20.9 21 0.00045 28.9 -1.1 13 14-26 165-177 (440)
49 PHA02857 monoglyceride lipase; 20.6 28 0.0006 23.6 -0.4 10 14-23 100-109 (276)
50 TIGR03611 RutD pyrimidine util 20.1 24 0.00053 22.3 -0.7 11 14-24 83-93 (257)
No 1
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=82.23 E-value=0.29 Score=34.42 Aligned_cols=12 Identities=50% Similarity=1.060 Sum_probs=10.3
Q ss_pred hhhhhcccccCC
Q 034901 14 SFVGNSMGGVRG 25 (79)
Q Consensus 14 sfi~nsmgG~RG 25 (79)
||||.||||+--
T Consensus 81 sfIgHSLGGli~ 92 (217)
T PF05057_consen 81 SFIGHSLGGLIA 92 (217)
T ss_pred eEEEecccHHHH
Confidence 899999999743
No 2
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=81.67 E-value=0.71 Score=31.66 Aligned_cols=30 Identities=3% Similarity=-0.021 Sum_probs=22.2
Q ss_pred hhHHHHHHhhhhheeeEEcCchhhhhhchh
Q 034901 27 ANLASWVVAGTLAYYLWVKPSQDLKREQEP 56 (79)
Q Consensus 27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~ 56 (79)
..+.-+++..++-|||.++|.|.+++|+++
T Consensus 5 ~~ll~lv~i~~i~yF~~iRPQkKr~K~~~~ 34 (109)
T PRK05886 5 VLFLPFLLIMGGFMYFASRRQRKAMQATID 34 (109)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 456667777888899999998766655543
No 3
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=73.60 E-value=2.8 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=21.5
Q ss_pred hHHHHHHhhhhheeeEEcCchhhhhhchhhH
Q 034901 28 NLASWVVAGTLAYYLWVKPSQDLKREQEPLQ 58 (79)
Q Consensus 28 nlAaW~VAG~lAYylwvkPe~~~~~eqe~ra 58 (79)
.+.-.++...+-|||.++|.+.+++++++..
T Consensus 5 ~l~~~vv~~~i~yf~~~rpqkK~~k~~~~m~ 35 (84)
T TIGR00739 5 TLLPLVLIFLIFYFLIIRPQRKRRKAHKKLI 35 (84)
T ss_pred HHHHHHHHHHHHHHheechHHHHHHHHHHHH
Confidence 3445566677889999999877766664433
No 4
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=71.85 E-value=2.6 Score=28.38 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=26.5
Q ss_pred CchhHHHHHHhhhhheeeEEcCchhhhhhchhhH
Q 034901 25 GGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQ 58 (79)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe~~~~~eqe~ra 58 (79)
+.+.+.--++..++-||+.++|.|...+|.++..
T Consensus 8 ~~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~ml 41 (97)
T COG1862 8 GLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQELL 41 (97)
T ss_pred cHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3466777888999999999999887776665543
No 5
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=70.62 E-value=1.9 Score=28.95 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=21.9
Q ss_pred ccccCCchhHHHHHHhhhhheeeEE--cCchhhhh
Q 034901 20 MGGVRGGANLASWVVAGTLAYYLWV--KPSQDLKR 52 (79)
Q Consensus 20 mgG~RG~~nlAaW~VAG~lAYylwv--kPe~~~~~ 52 (79)
|+++|=--+..+=+-+||++|.||. .|..+.++
T Consensus 1 M~~~r~~~~~~~llG~GGvG~~L~~LvtPgeerK~ 35 (84)
T PF15141_consen 1 MSSLRKALSVVALLGFGGVGYALFVLVTPGEERKQ 35 (84)
T ss_pred CchHHHHHHHHHHHHccchhheeeeEeCCcHHHHH
Confidence 4455555555666778999999985 57666443
No 6
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=68.91 E-value=1.3 Score=28.03 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=23.3
Q ss_pred hhHHHHHHhhhhheeeEEcCchhhhhhchhhH
Q 034901 27 ANLASWVVAGTLAYYLWVKPSQDLKREQEPLQ 58 (79)
Q Consensus 27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~ra 58 (79)
+.+.-.++...+-||+.++|.+.+++|+++..
T Consensus 3 ~~li~lv~~~~i~yf~~~rpqkk~~k~~~~m~ 34 (82)
T PF02699_consen 3 SMLIPLVIIFVIFYFLMIRPQKKQQKEHQEML 34 (82)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhhheecHHHHHHHHHHHHH
Confidence 35666677788889999999887666655443
No 7
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=67.14 E-value=3.4 Score=27.70 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=24.9
Q ss_pred hhHHHHHHhhhhheeeEEcCchhhhhhchhhHHH
Q 034901 27 ANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLL 60 (79)
Q Consensus 27 ~nlAaW~VAG~lAYylwvkPe~~~~~eqe~raal 60 (79)
..+.-+++...+-|||-++|.+.+++++++....
T Consensus 19 ~~ll~lvii~~i~yf~~~RpqkK~~k~~~~~~~~ 52 (106)
T PRK05585 19 SSLLPLVVFFAIFYFLIIRPQQKRQKEHKKMLSS 52 (106)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 4666677777788999999988877776554443
No 8
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=58.43 E-value=6.4 Score=29.46 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=11.8
Q ss_pred Hhhhhheee-EEcCchhhhh
Q 034901 34 VAGTLAYYL-WVKPSQDLKR 52 (79)
Q Consensus 34 VAG~lAYyl-wvkPe~~~~~ 52 (79)
.+||.+||| ++||-++.+.
T Consensus 172 ~gGGa~yYfK~~K~K~~~~~ 191 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEKA 191 (218)
T ss_pred hhcceEEEEEEecccccccc
Confidence 445555555 7888776654
No 9
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=53.70 E-value=13 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=16.7
Q ss_pred hHHHHHHhhhhheeeEEcCchhhhhhchh
Q 034901 28 NLASWVVAGTLAYYLWVKPSQDLKREQEP 56 (79)
Q Consensus 28 nlAaW~VAG~lAYylwvkPe~~~~~eqe~ 56 (79)
.+.-.++..++-| |.++|.|.+++++++
T Consensus 5 ~il~~vv~~~i~y-f~iRPQkKr~Ke~~e 32 (113)
T PRK06531 5 TIIMFVVMLGLIF-FMQRQQKKQAQERQN 32 (113)
T ss_pred HHHHHHHHHHHHH-heechHHHHHHHHHH
Confidence 3444455556655 469998766665544
No 10
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=51.72 E-value=27 Score=22.19 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=19.6
Q ss_pred CchhHHHHHHhhhhheeeEEcCch
Q 034901 25 GGANLASWVVAGTLAYYLWVKPSQ 48 (79)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe~ 48 (79)
++.|++.++|.-|+|+.....+..
T Consensus 90 ~~~~l~~~Lv~~G~A~~~~~~~~~ 113 (138)
T smart00318 90 GGNNIAEELVKEGLAKVYRYADKD 113 (138)
T ss_pred CCCcHHHHHHhcCCEEEEEecCcc
Confidence 457899999999999988766553
No 11
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=51.41 E-value=4.9 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHhhhhheeeEEcCchhhhhhchh
Q 034901 29 LASWVVAGTLAYYLWVKPSQDLKREQEP 56 (79)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~~eqe~ 56 (79)
+++.+++..+.|++.+.|-.+..+..+.
T Consensus 21 ~~~~~l~~~l~~~~~~~P~~~~~~~~~~ 48 (160)
T PF04612_consen 21 VLGVVLLLALLYLLLWQPLLERRDQLQQ 48 (160)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999998877665543
No 12
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=48.46 E-value=4.1 Score=29.22 Aligned_cols=12 Identities=50% Similarity=0.894 Sum_probs=9.6
Q ss_pred hhhhcccccCCc
Q 034901 15 FVGNSMGGVRGG 26 (79)
Q Consensus 15 fi~nsmgG~RG~ 26 (79)
+||.||||+--.
T Consensus 89 lVgHSmGGlvar 100 (225)
T PF07819_consen 89 LVGHSMGGLVAR 100 (225)
T ss_pred EEEEchhhHHHH
Confidence 789999998543
No 13
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=47.78 E-value=8.2 Score=26.33 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=19.0
Q ss_pred HHHHHhhhhheeeEEcCchhhhhhch
Q 034901 30 ASWVVAGTLAYYLWVKPSQDLKREQE 55 (79)
Q Consensus 30 AaW~VAG~lAYylwvkPe~~~~~eqe 55 (79)
.+=+++|+.||||..++..+.+.+++
T Consensus 14 ~~l~~~g~~~~~~~~~~~~~~~~~~~ 39 (142)
T PRK07718 14 IVIALIGTAALVLVMGFSEAKKQSGE 39 (142)
T ss_pred HHHHHHHHHHHhhhcccCCccccccC
Confidence 34567889999999998777765333
No 14
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=47.69 E-value=3.7 Score=29.19 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=9.3
Q ss_pred hhhhhcccccC
Q 034901 14 SFVGNSMGGVR 24 (79)
Q Consensus 14 sfi~nsmgG~R 24 (79)
-+||.||||+-
T Consensus 62 ~liGSSlGG~~ 72 (187)
T PF05728_consen 62 VLIGSSLGGFY 72 (187)
T ss_pred EEEEEChHHHH
Confidence 57999999983
No 15
>PLN02965 Probable pheophorbidase
Probab=43.55 E-value=6 Score=26.92 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=9.0
Q ss_pred hhhhhcccccC
Q 034901 14 SFVGNSMGGVR 24 (79)
Q Consensus 14 sfi~nsmgG~R 24 (79)
-+||+||||.-
T Consensus 75 ~lvGhSmGG~i 85 (255)
T PLN02965 75 ILVGHSIGGGS 85 (255)
T ss_pred EEEecCcchHH
Confidence 47899999973
No 16
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=41.20 E-value=33 Score=23.54 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=32.7
Q ss_pred CCchhHHHHHHhhhhheeeEEcCchhhhhhchhhHHHHhhccccCc
Q 034901 24 RGGANLASWVVAGTLAYYLWVKPSQDLKREQEPLQLLIQIGTWKNE 69 (79)
Q Consensus 24 RG~~nlAaW~VAG~lAYylwvkPe~~~~~eqe~raala~~~~~~~~ 69 (79)
.+++|++.|+|.=|+|.-+.-.+..+.-.+.|+.|.-+..+-|++.
T Consensus 127 ~~~~~v~~~lV~~G~A~~~~~~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 127 VDGTDVNLELVKEGLARVYYNSEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred ECCEEHHHHHHhCCCEEEeccccchHHHHHHHHHHHHcccCccCCC
Confidence 5789999999999997655534444445555666777777778774
No 17
>PRK06518 hypothetical protein; Provisional
Probab=40.84 E-value=40 Score=24.33 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=29.6
Q ss_pred CchhHHHHHHhhhhheeeEEcCch---hhhhhchhhHHHHhhccccC
Q 034901 25 GGANLASWVVAGTLAYYLWVKPSQ---DLKREQEPLQLLIQIGTWKN 68 (79)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe~---~~~~eqe~raala~~~~~~~ 68 (79)
++.+|..++|.-|+|+..-..++. ..=..-|+.|.-+..+-|++
T Consensus 110 ~g~dln~~mV~~G~A~ay~~~~~~~~~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 110 DGVDIAALGLAEGMAVLSKDDHEDPGPAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred CCEEHHHHHHhCCCEEEEeeccCCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 467999999999999876654422 11223355666677788875
No 18
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=38.35 E-value=6.4 Score=28.55 Aligned_cols=10 Identities=50% Similarity=0.919 Sum_probs=8.6
Q ss_pred hhhhhccccc
Q 034901 14 SFVGNSMGGV 23 (79)
Q Consensus 14 sfi~nsmgG~ 23 (79)
.+||+||||.
T Consensus 141 ~lvG~SmGG~ 150 (343)
T PRK08775 141 AFVGYSYGAL 150 (343)
T ss_pred EEEEECHHHH
Confidence 5899999994
No 19
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=37.58 E-value=6.2 Score=25.85 Aligned_cols=10 Identities=50% Similarity=0.783 Sum_probs=7.9
Q ss_pred hhhhhccccc
Q 034901 14 SFVGNSMGGV 23 (79)
Q Consensus 14 sfi~nsmgG~ 23 (79)
.+||+||||.
T Consensus 69 ~lvG~S~Gg~ 78 (242)
T PRK11126 69 WLVGYSLGGR 78 (242)
T ss_pred EEEEECHHHH
Confidence 3689999985
No 20
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=37.43 E-value=62 Score=20.19 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.1
Q ss_pred chhHHHHHHhhhhheeeEEcCc
Q 034901 26 GANLASWVVAGTLAYYLWVKPS 47 (79)
Q Consensus 26 ~~nlAaW~VAG~lAYylwvkPe 47 (79)
+.|+..++|.-|+|...-..+.
T Consensus 83 ~~~v~~~Lv~~G~A~~~~~~~~ 104 (129)
T cd00175 83 GENIAEELVKEGLARVYRYYPD 104 (129)
T ss_pred CCcHHHHHHhcCCEEEEEECCC
Confidence 5799999999999998877664
No 21
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.23 E-value=16 Score=29.33 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.2
Q ss_pred CchhHHHHHHhhhhheeeEEcCch
Q 034901 25 GGANLASWVVAGTLAYYLWVKPSQ 48 (79)
Q Consensus 25 G~~nlAaW~VAG~lAYylwvkPe~ 48 (79)
+.-|++||.+|-++-|-|..+||=
T Consensus 89 ~~i~~~si~~aI~~~~lL~~~peW 112 (277)
T COG3389 89 YAINIASIGLAIGLVYLLYKYPEW 112 (277)
T ss_pred HHHHHHHHHHHHHHHHhhhhccce
Confidence 356999999999999999999973
No 22
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=36.64 E-value=7.9 Score=27.52 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=9.4
Q ss_pred hhhhhcccccCC
Q 034901 14 SFVGNSMGGVRG 25 (79)
Q Consensus 14 sfi~nsmgG~RG 25 (79)
.+||+||||+-+
T Consensus 90 ~lvGhS~GG~v~ 101 (273)
T PLN02211 90 ILVGHSAGGLSV 101 (273)
T ss_pred EEEEECchHHHH
Confidence 378999999843
No 23
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=36.51 E-value=22 Score=23.37 Aligned_cols=27 Identities=41% Similarity=0.516 Sum_probs=19.9
Q ss_pred hhhhhhcccccCCchhHHHHHHhhhhh
Q 034901 13 RSFVGNSMGGVRGGANLASWVVAGTLA 39 (79)
Q Consensus 13 rsfi~nsmgG~RG~~nlAaW~VAG~lA 39 (79)
-+|+.-.+||-+|+.|-.|.-+|-.|.
T Consensus 48 g~~vIplL~GH~GGan~lA~~iA~~lg 74 (84)
T PF11760_consen 48 GRFVIPLLGGHRGGANELARQIAELLG 74 (84)
T ss_dssp --EEEEEE-TTTT-HHHHHHHHHHHTT
T ss_pred CCEEEEeccCCcchHHHHHHHHHHHhC
Confidence 368888999999999999998887653
No 24
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=36.44 E-value=19 Score=20.48 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=8.6
Q ss_pred CchhHHHHHH
Q 034901 25 GGANLASWVV 34 (79)
Q Consensus 25 G~~nlAaW~V 34 (79)
|..|+.||+.
T Consensus 13 ~~~NFSaWV~ 22 (30)
T PF13132_consen 13 GSGNFSAWVK 22 (30)
T ss_pred cCcChHHHHH
Confidence 5789999986
No 25
>PF09819 ABC_cobalt: ABC-type cobalt transport system, permease component; InterPro: IPR017195 This group represents a predicted ABC-type thiamin-related transport system, permease component 1. It is probably part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. It could also transport other HMP-containing products. The complex is composed of two ATP-binding proteins (ykoD), two transmembrane proteins (ykoC and ykoE) and a solute-binding protein (ykoF).
Probab=33.22 E-value=14 Score=25.62 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=19.1
Q ss_pred HHHHHHhhhhheeeEEcCchhhh
Q 034901 29 LASWVVAGTLAYYLWVKPSQDLK 51 (79)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~ 51 (79)
..-|..+|.+|.|+..||--..-
T Consensus 44 ~GlW~~a~~la~~iiRKPGaa~~ 66 (129)
T PF09819_consen 44 YGLWFMAGPLAAYIIRKPGAALL 66 (129)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHH
Confidence 45799999999999999975543
No 26
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=31.37 E-value=21 Score=19.69 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=13.9
Q ss_pred HHHHHHhhhhheeeEEcCchh
Q 034901 29 LASWVVAGTLAYYLWVKPSQD 49 (79)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~ 49 (79)
+..|.++|+++.| +||.|
T Consensus 19 l~~~~~tG~~~~f---~~ei~ 36 (37)
T PF13706_consen 19 LFVIFLTGAVMVF---RDEID 36 (37)
T ss_pred HHHHHHHhHHHHH---HHhhc
Confidence 6789999999887 55543
No 27
>PRK07581 hypothetical protein; Validated
Probab=30.27 E-value=9.6 Score=27.22 Aligned_cols=12 Identities=42% Similarity=0.471 Sum_probs=9.5
Q ss_pred hhhhhcccccCC
Q 034901 14 SFVGNSMGGVRG 25 (79)
Q Consensus 14 sfi~nsmgG~RG 25 (79)
.+||+||||.-+
T Consensus 127 ~lvG~S~GG~va 138 (339)
T PRK07581 127 LVVGWSMGAQQT 138 (339)
T ss_pred EEEEeCHHHHHH
Confidence 368999999754
No 28
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=29.88 E-value=10 Score=26.02 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=8.9
Q ss_pred hhhhhcccccC
Q 034901 14 SFVGNSMGGVR 24 (79)
Q Consensus 14 sfi~nsmgG~R 24 (79)
.+||+||||.-
T Consensus 94 ~LvG~S~GG~v 104 (276)
T TIGR02240 94 NAIGVSWGGAL 104 (276)
T ss_pred EEEEECHHHHH
Confidence 36899999973
No 29
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=29.61 E-value=12 Score=22.77 Aligned_cols=13 Identities=54% Similarity=0.889 Sum_probs=11.0
Q ss_pred HHhhhhheeeEEc
Q 034901 33 VVAGTLAYYLWVK 45 (79)
Q Consensus 33 ~VAG~lAYylwvk 45 (79)
++-|++|||++.+
T Consensus 13 v~iG~~ayyl~e~ 25 (47)
T PF11654_consen 13 VFIGTSAYYLYEN 25 (47)
T ss_pred HHHHHHHHHHHHH
Confidence 5679999999876
No 30
>PTZ00046 rifin; Provisional
Probab=28.94 E-value=14 Score=30.18 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=24.6
Q ss_pred hhcccccCCchhHHHHHHhhhhheeeEEcCchhhhhh
Q 034901 17 GNSMGGVRGGANLASWVVAGTLAYYLWVKPSQDLKRE 53 (79)
Q Consensus 17 ~nsmgG~RG~~nlAaW~VAG~lAYylwvkPe~~~~~e 53 (79)
-++-+|| | .=..+|++-||++|+-|..-......+
T Consensus 141 LkCG~~L-G-gVaP~~Gliggi~~~~Wk~~a~~aA~~ 175 (358)
T PTZ00046 141 LRCGCGL-G-GVAPSWGLIGGIAVNAWKKAALAAAIK 175 (358)
T ss_pred HhcCCcc-c-cccccccccchHHHHHHHHHHHHHHHH
Confidence 3455666 5 466899999999999997554444444
No 31
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=28.92 E-value=12 Score=28.48 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=12.7
Q ss_pred hhhhhcccccCCchhHH
Q 034901 14 SFVGNSMGGVRGGANLA 30 (79)
Q Consensus 14 sfi~nsmgG~RG~~nlA 30 (79)
+.|||||||+-+-.=.|
T Consensus 131 ~lvghS~Gg~va~~~Aa 147 (326)
T KOG1454|consen 131 SLVGHSLGGIVALKAAA 147 (326)
T ss_pred EEEEeCcHHHHHHHHHH
Confidence 57899999987655443
No 32
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=28.28 E-value=31 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=12.3
Q ss_pred HHHHHHhhhhheeeE
Q 034901 29 LASWVVAGTLAYYLW 43 (79)
Q Consensus 29 lAaW~VAG~lAYylw 43 (79)
...|.++|.+.|+.+
T Consensus 32 f~iWl~iGl~iYf~Y 46 (51)
T PF13906_consen 32 FGIWLAIGLVIYFGY 46 (51)
T ss_pred HHHHHHHHHHHHHhe
Confidence 568999999988764
No 33
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=28.26 E-value=31 Score=21.19 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=16.6
Q ss_pred cCCchhH--HHHHHhhhhheeeEEcCc
Q 034901 23 VRGGANL--ASWVVAGTLAYYLWVKPS 47 (79)
Q Consensus 23 ~RG~~nl--AaW~VAG~lAYylwvkPe 47 (79)
++|+.|. |.|+.-|.+..|+..+|.
T Consensus 22 ~~GR~N~~~ATya~i~li~~~~k~~~k 48 (49)
T PF14960_consen 22 IRGRANVAKATYASIGLIILYFKLRRK 48 (49)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhcccC
Confidence 6899996 466666666666655553
No 34
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=26.24 E-value=17 Score=24.37 Aligned_cols=12 Identities=58% Similarity=0.991 Sum_probs=9.6
Q ss_pred hhhhhcccccCC
Q 034901 14 SFVGNSMGGVRG 25 (79)
Q Consensus 14 sfi~nsmgG~RG 25 (79)
.+||.||||.-+
T Consensus 104 ~lvG~S~Gg~ia 115 (282)
T TIGR03343 104 HLVGNSMGGATA 115 (282)
T ss_pred eEEEECchHHHH
Confidence 578999998654
No 35
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.09 E-value=27 Score=23.13 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=10.8
Q ss_pred HHHhhhhheeeEEcCc
Q 034901 32 WVVAGTLAYYLWVKPS 47 (79)
Q Consensus 32 W~VAG~lAYylwvkPe 47 (79)
=++.+.++|.+|.-+.
T Consensus 9 l~ll~~l~y~l~~g~~ 24 (105)
T PRK00888 9 LALLVWLQYSLWFGKN 24 (105)
T ss_pred HHHHHHHHHHHhccCC
Confidence 3566778888886544
No 36
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=25.69 E-value=37 Score=25.68 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=28.6
Q ss_pred chhHHHHHHhhhhheeeEEcCchhhhhh----------chhhHHHHhhccccCccceee
Q 034901 26 GANLASWVVAGTLAYYLWVKPSQDLKRE----------QEPLQLLIQIGTWKNENRFLI 74 (79)
Q Consensus 26 ~~nlAaW~VAG~lAYylwvkPe~~~~~e----------qe~raala~~~~~~~~~ryVe 74 (79)
.+-||+|++-.-..+-.|.+-..+-+-+ +++++.....+ +++-.||.+
T Consensus 79 egrLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE-~se~kRY~~ 136 (179)
T COG1102 79 EGRLAGWIVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVERE-ESEKKRYKK 136 (179)
T ss_pred hhhhHHHHhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHH
Confidence 4569999999666666666655444333 24555555543 455556643
No 37
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.89 E-value=91 Score=16.98 Aligned_cols=23 Identities=17% Similarity=0.582 Sum_probs=16.6
Q ss_pred CCchhHHHHHH-------hhhhheeeEEcC
Q 034901 24 RGGANLASWVV-------AGTLAYYLWVKP 46 (79)
Q Consensus 24 RG~~nlAaW~V-------AG~lAYylwvkP 46 (79)
+..++-.+|++ .|.++|+++-++
T Consensus 17 ~~~~~k~~W~~~i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 17 RSPSSKILWLIVILFFPIIGPILYLIFGRK 46 (46)
T ss_pred CCCchhhHHHHHHHHHHHHHHhheEEEeCC
Confidence 55678889985 477888887553
No 38
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=24.40 E-value=15 Score=29.99 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=12.8
Q ss_pred chhhhhhhcccccCCc
Q 034901 11 NLRSFVGNSMGGVRGG 26 (79)
Q Consensus 11 n~rsfi~nsmgG~RG~ 26 (79)
.+...||.||||...-
T Consensus 147 ~l~avvGgSmGGMqal 162 (368)
T COG2021 147 KLAAVVGGSMGGMQAL 162 (368)
T ss_pred eEeeeeccChHHHHHH
Confidence 5678899999998653
No 39
>PF09406 DUF2004: Protein of unknown function (DUF2004); InterPro: IPR018546 This is a family of proteins with unknown function. The structure of one of the proteins in this family has revealed a novel alpha-beta fold []. ; PDB: 2ABY_A.
Probab=24.12 E-value=30 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=15.8
Q ss_pred hhchhhHHHHhhccccCc----cceeecc
Q 034901 52 REQEPLQLLIQIGTWKNE----NRFLIHR 76 (79)
Q Consensus 52 ~eqe~raala~~~~~~~~----~ryVe~r 76 (79)
..+++|+||++.. .+. ..|+++.
T Consensus 2 ~~~~a~~Al~~~~--~~~~~~~~~y~~fH 28 (106)
T PF09406_consen 2 LDEKARAALAQYL--KDDFDTVTEYIDFH 28 (106)
T ss_dssp SHHHHHHHHHHHH--HHH-T---EEEEEE
T ss_pred hHHHHHHHHHHHH--hcccchHHHHHHHH
Confidence 4578899998876 555 6677653
No 40
>PRK11071 esterase YqiA; Provisional
Probab=23.49 E-value=17 Score=24.84 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=8.9
Q ss_pred hhhhhcccccC
Q 034901 14 SFVGNSMGGVR 24 (79)
Q Consensus 14 sfi~nsmgG~R 24 (79)
..||+||||.-
T Consensus 64 ~lvG~S~Gg~~ 74 (190)
T PRK11071 64 GLVGSSLGGYY 74 (190)
T ss_pred EEEEECHHHHH
Confidence 57899999963
No 41
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=23.36 E-value=14 Score=23.18 Aligned_cols=10 Identities=60% Similarity=1.179 Sum_probs=7.8
Q ss_pred hhhhhccccc
Q 034901 14 SFVGNSMGGV 23 (79)
Q Consensus 14 sfi~nsmgG~ 23 (79)
..||.||||.
T Consensus 47 ~~vG~S~Gg~ 56 (230)
T PF00561_consen 47 NLVGHSMGGM 56 (230)
T ss_dssp EEEEETHHHH
T ss_pred EEEEECCChH
Confidence 5688899884
No 42
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=23.25 E-value=31 Score=25.58 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=19.1
Q ss_pred HHHHHHhhhhheeeEEcCchhhhhhc
Q 034901 29 LASWVVAGTLAYYLWVKPSQDLKREQ 54 (79)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~~eq 54 (79)
+++..+.|.++.++|.+||++++||-
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (452)
T PRK11273 420 MIGGSILAVILLIVVMIGEKRHHEEL 445 (452)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHH
Confidence 44455667778888999998877664
No 43
>PRK10580 proY putative proline-specific permease; Provisional
Probab=22.59 E-value=24 Score=26.91 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHhhhhheeeEEcCchhhhhhc
Q 034901 29 LASWVVAGTLAYYLWVKPSQDLKREQ 54 (79)
Q Consensus 29 lAaW~VAG~lAYylwvkPe~~~~~eq 54 (79)
...|++.+.+.|+++.|-.+++.|.|
T Consensus 432 ~~~~~~~~~~~y~~~~~~~~~~~~~~ 457 (457)
T PRK10580 432 GFAWIVLLLIGWMFKRRHDRQLAEAQ 457 (457)
T ss_pred HHHHHHHHHHHHHHHhcccCCccccC
Confidence 35688899999998776555555443
No 44
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=22.55 E-value=12 Score=25.11 Aligned_cols=11 Identities=55% Similarity=1.008 Sum_probs=9.5
Q ss_pred hhhhhhccccc
Q 034901 13 RSFVGNSMGGV 23 (79)
Q Consensus 13 rsfi~nsmgG~ 23 (79)
|..+|.||||+
T Consensus 117 ~~i~G~S~GG~ 127 (251)
T PF00756_consen 117 RAIAGHSMGGY 127 (251)
T ss_dssp EEEEEETHHHH
T ss_pred eEEeccCCCcH
Confidence 67889999996
No 45
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=21.45 E-value=31 Score=21.86 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=14.7
Q ss_pred chhHHHHHHhhhhheeeEE
Q 034901 26 GANLASWVVAGTLAYYLWV 44 (79)
Q Consensus 26 ~~nlAaW~VAG~lAYylwv 44 (79)
+.|+|.|.+|.+.+-.++.
T Consensus 14 ~p~~a~wG~aa~~~v~~f~ 32 (64)
T PF09796_consen 14 GPNLALWGGAAGAAVLFFT 32 (64)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5689999999887766553
No 46
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=21.17 E-value=24 Score=23.11 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=8.3
Q ss_pred hhhhhccccc
Q 034901 14 SFVGNSMGGV 23 (79)
Q Consensus 14 sfi~nsmgG~ 23 (79)
..||.||||.
T Consensus 98 ~lvG~S~Gg~ 107 (278)
T TIGR03056 98 GVIGHSAGAA 107 (278)
T ss_pred eEEEECccHH
Confidence 5679999996
No 47
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=21.02 E-value=19 Score=22.14 Aligned_cols=10 Identities=60% Similarity=0.850 Sum_probs=8.1
Q ss_pred hhhhhccccc
Q 034901 14 SFVGNSMGGV 23 (79)
Q Consensus 14 sfi~nsmgG~ 23 (79)
..||.||||.
T Consensus 73 ~l~G~S~Gg~ 82 (251)
T TIGR03695 73 FLVGYSMGGR 82 (251)
T ss_pred EEEEeccHHH
Confidence 4679999986
No 48
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=20.92 E-value=21 Score=28.87 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.2
Q ss_pred hhhhhcccccCCc
Q 034901 14 SFVGNSMGGVRGG 26 (79)
Q Consensus 14 sfi~nsmgG~RG~ 26 (79)
.+||.||||+-..
T Consensus 165 ~LVGHSMGGlva~ 177 (440)
T PLN02733 165 NIISHSMGGLLVK 177 (440)
T ss_pred EEEEECHhHHHHH
Confidence 5899999997543
No 49
>PHA02857 monoglyceride lipase; Provisional
Probab=20.56 E-value=28 Score=23.60 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=8.1
Q ss_pred hhhhhccccc
Q 034901 14 SFVGNSMGGV 23 (79)
Q Consensus 14 sfi~nsmgG~ 23 (79)
..||.||||.
T Consensus 100 ~lvG~S~GG~ 109 (276)
T PHA02857 100 FLLGHSMGAT 109 (276)
T ss_pred EEEEcCchHH
Confidence 3689999995
No 50
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=20.08 E-value=24 Score=22.32 Aligned_cols=11 Identities=45% Similarity=1.044 Sum_probs=8.6
Q ss_pred hhhhhcccccC
Q 034901 14 SFVGNSMGGVR 24 (79)
Q Consensus 14 sfi~nsmgG~R 24 (79)
..||.||||.-
T Consensus 83 ~l~G~S~Gg~~ 93 (257)
T TIGR03611 83 HFVGHALGGLI 93 (257)
T ss_pred EEEEechhHHH
Confidence 46899999953
Done!