BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034902
MQQERLTWRRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQGIVHKMLK
HGVLFNCVSIDMSYLHENA

High Scoring Gene Products

Symbol, full name Information P value
NRPE7
AT4G14660 		protein from Arabidopsis thaliana 9.8e-16
NRPD7
AT3G22900 		protein from Arabidopsis thaliana 6.6e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034902
        (79 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2130060 - symbol:NRPE7 species:3702 "Arabidops...   197  9.8e-16   1
TAIR|locus:2084573 - symbol:NRPD7 species:3702 "Arabidops...   142  6.6e-10   1


>TAIR|locus:2130060 [details] [associations]
            symbol:NRPE7 species:3702 "Arabidopsis thaliana"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000419
            "DNA-directed RNA polymerase V complex" evidence=IPI]
            InterPro:IPR005576 Pfam:PF03876 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0006351 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000419
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 EMBL:BT030624 IPI:IPI00536833
            RefSeq:NP_193202.2 UniGene:At.49694 ProteinModelPortal:A6QRA1
            STRING:A6QRA1 PaxDb:A6QRA1 PRIDE:A6QRA1 EnsemblPlants:AT4G14660.1
            GeneID:827116 KEGG:ath:AT4G14660 TAIR:At4g14660 eggNOG:NOG264504
            HOGENOM:HOG000241228 InParanoid:A6QRA1 KO:K16253 OMA:KVQLPWN
            PhylomeDB:A6QRA1 ProtClustDB:CLSN2688679 Genevestigator:A6QRA1
            Uniprot:A6QRA1
        Length = 178

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/74 (55%), Positives = 54/74 (72%)

Query:    10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIG---KIFQG-----IVHKMLKH 61
             +K+TK+LG Y+AVTTL+  GEGK+RE+ GE+LFPV+F G   KIF+G     +VHK+LKH
Sbjct:    40 KKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKH 99

Query:    62 GVLFNCVSIDMSYL 75
             GV   C  I+  YL
Sbjct:   100 GVFMRCGPIENVYL 113


>TAIR|locus:2084573 [details] [associations]
            symbol:NRPD7 species:3702 "Arabidopsis thaliana"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA;ISS] [GO:0000418
            "DNA-directed RNA polymerase IV complex" evidence=IPI]
            InterPro:IPR005576 Pfam:PF03876 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006351 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0003899 GO:GO:0000418
            Gene3D:3.30.1490.120 SUPFAM:SSF88798 HOGENOM:HOG000241228 KO:K16253
            ProtClustDB:CLSN2688679 EMBL:AY085637 IPI:IPI00522501
            RefSeq:NP_566719.1 UniGene:At.37797 ProteinModelPortal:Q8LE42
            STRING:Q8LE42 PaxDb:Q8LE42 PRIDE:Q8LE42 EnsemblPlants:AT3G22900.1
            GeneID:821862 KEGG:ath:AT3G22900 TAIR:At3g22900 eggNOG:NOG327805
            InParanoid:Q8LE42 OMA:RIQIGAR PhylomeDB:Q8LE42
            Genevestigator:Q8LE42 Uniprot:Q8LE42
        Length = 174

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/75 (44%), Positives = 46/75 (61%)

Query:     9 RRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIG---KIFQG-----IVHKMLK 60
             + K+TKDLG  +  T LE+ GEGK++E  GE+ FPVVF G   K+F+G     +VHK+ K
Sbjct:    38 KEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHK 97

Query:    61 HGVLFNCVSIDMSYL 75
              GV       ++ YL
Sbjct:    98 TGVFLKSGPYEIIYL 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       79        79   0.00091  102 3  11 22  0.36    29
                                                     29  0.39    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  98 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.87u 0.15s 8.02t   Elapsed:  00:00:00
  Total cpu time:  7.87u 0.15s 8.02t   Elapsed:  00:00:00
  Start:  Fri May 10 03:25:08 2013   End:  Fri May 10 03:25:08 2013

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