BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034902
(79 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255563208|ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223538083|gb|EEF39694.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLKH 61
+K+TKDLG YLAVTTLES GEGKVRE+ G++LFPVV F G+I +G+VHK+LKH
Sbjct: 40 KKATKDLGYYLAVTTLESIGEGKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYL 75
GV C I+ YL
Sbjct: 100 GVFIRCGPIENIYL 113
>gi|224107923|ref|XP_002314654.1| predicted protein [Populus trichocarpa]
gi|222863694|gb|EEF00825.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 8/75 (10%)
Query: 9 RRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLK 60
++++TKDLG YLAV+TLES GEGKVR++ G++LFPVVF G+I +G+VHK+LK
Sbjct: 56 KKRATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLK 115
Query: 61 HGVLFNCVSIDMSYL 75
HGVL C I+ YL
Sbjct: 116 HGVLLRCGPIENIYL 130
>gi|118487294|gb|ABK95475.1| unknown [Populus trichocarpa]
Length = 176
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 8/75 (10%)
Query: 9 RRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLK 60
++++TKDLG YLAV+TLES GEGKVR++ G++LFPVVF G+I +G+VHK+LK
Sbjct: 39 KKRATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLK 98
Query: 61 HGVLFNCVSIDMSYL 75
HGVL C I+ YL
Sbjct: 99 HGVLLRCGPIENIYL 113
>gi|224102153|ref|XP_002312568.1| predicted protein [Populus trichocarpa]
gi|222852388|gb|EEE89935.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 54/75 (72%), Gaps = 8/75 (10%)
Query: 9 RRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLK 60
++ +TKDLG YLAV+TLES GEGKVR++ G++LFPVVF G+I GIVHK+LK
Sbjct: 39 KKGATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLK 98
Query: 61 HGVLFNCVSIDMSYL 75
HGVL C I+ YL
Sbjct: 99 HGVLLRCGPIENIYL 113
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLKH 61
+K+TKDLG +LAVTTLE GEGKVR++ G++LFPVV F G+I +G+VHK+LKH
Sbjct: 40 KKATKDLGYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYL 75
GV C I+ YL
Sbjct: 100 GVFMRCGPIENVYL 113
>gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPV--------VFIGKIFQGIVHKMLKH 61
+K+TK+LG Y+AVTTL+ GEGK+RE+ GE+LFPV +F G+I G+VHK+LKH
Sbjct: 23 KKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKH 82
Query: 62 GVLFNCVSIDMSYL 75
GV C I+ YL
Sbjct: 83 GVFMRCGPIENVYL 96
>gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPV--------VFIGKIFQGIVHKMLKH 61
+K+TK+LG Y+AVTTL+ GEGK+RE+ GE+LFPV +F G+I G+VHK+LKH
Sbjct: 40 KKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYL 75
GV C I+ YL
Sbjct: 100 GVFMRCGPIENVYL 113
>gi|42566796|ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana]
gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 178
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPV--------VFIGKIFQGIVHKMLKH 61
+K+TK+LG Y+AVTTL+ GEGK+RE+ GE+LFPV +F G+I G+VHK+LKH
Sbjct: 40 KKATKELGYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYL 75
GV C I+ YL
Sbjct: 100 GVFMRCGPIENVYL 113
>gi|297737162|emb|CBI26363.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
+K+T++LG +LAVTTLE+ GEGKVR+++G++LFPVVF G+I G+VHK+LKH
Sbjct: 105 KKATQELGYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKH 164
Query: 62 GVLFNCVSIDMSYL 75
GV+ C ++ YL
Sbjct: 165 GVILRCGPVENIYL 178
>gi|225432916|ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147822056|emb|CAN61549.1| hypothetical protein VITISV_043525 [Vitis vinifera]
Length = 177
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 55/74 (74%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
+K+T++LG +LAVTTLE+ GEGKVR+++G++LFPVVF G+I G+VHK+LKH
Sbjct: 40 KKATQELGYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYL 75
GV+ C ++ YL
Sbjct: 100 GVILRCGPVENIYL 113
>gi|388504534|gb|AFK40333.1| unknown [Lotus japonicus]
Length = 180
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLKH 61
+++TKDLG + AVTTL+ GEGKVR++ G++LFPVV F G+I +G+VHK+LKH
Sbjct: 40 KRATKDLGYFTAVTTLDKVGEGKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYL 75
GV C I+ YL
Sbjct: 100 GVFLRCGPIEHVYL 113
>gi|217074784|gb|ACJ85752.1| unknown [Medicago truncatula]
Length = 180
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 8/77 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLKH 61
+K+TKD+G +LAVTTL+ GEGKVR++ G++LFPVV F G++ +G+VHK+LKH
Sbjct: 40 KKATKDMGYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYLHEN 78
GV I+ +YL +
Sbjct: 100 GVFMRIGPIENAYLSSS 116
>gi|388498028|gb|AFK37080.1| unknown [Medicago truncatula]
Length = 180
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 8/77 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLKH 61
+K+TKD+G +LAVTTL+ GEGKVR++ G++LFPVV F G++ +G+VHK+LKH
Sbjct: 40 KKATKDMGYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKH 99
Query: 62 GVLFNCVSIDMSYLHEN 78
GV I+ +YL +
Sbjct: 100 GVFMRIGPIENAYLSSS 116
>gi|449465372|ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449522228|ref|XP_004168129.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 175
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 9/74 (12%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
+K+TKDLG +LAVTTLE+ GEGKVR+ G++LFPV+F G+I +G+VHK+LKH
Sbjct: 40 KKATKDLGYFLAVTTLENIGEGKVRQT-GDVLFPVIFSGITFKLYRGEILEGVVHKVLKH 98
Query: 62 GVLFNCVSIDMSYL 75
GV C ++ YL
Sbjct: 99 GVFLRCGPVENIYL 112
>gi|357441001|ref|XP_003590778.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|355479826|gb|AES61029.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
Length = 173
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 8/77 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLKH 61
+++TKD+G +LAVTTL+ GEGKVR++ G++LFPVV F G++ +G+VHK+LKH
Sbjct: 33 QRATKDMGYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKH 92
Query: 62 GVLFNCVSIDMSYLHEN 78
GV I+ +YL +
Sbjct: 93 GVFMRIGPIENAYLSSS 109
>gi|222630667|gb|EEE62799.1| hypothetical protein OsJ_17602 [Oryza sativa Japonica Group]
Length = 796
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++KD G Y+AV+ L++ EGKVRE G++LFPV F G+I G V K+LKH
Sbjct: 41 RKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKH 100
Query: 62 GVLFNCVSIDMSYLHE 77
GV I+ +L E
Sbjct: 101 GVFLKSGPIESIFLSE 116
>gi|115462713|ref|NP_001054956.1| Os05g0224700 [Oryza sativa Japonica Group]
gi|113578507|dbj|BAF16870.1| Os05g0224700 [Oryza sativa Japonica Group]
Length = 782
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++KD G Y+AV+ L++ EGKVRE G++LFPV F G+I G V K+LKH
Sbjct: 41 RKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKH 100
Query: 62 GVLFNCVSIDMSYLHE 77
GV I+ +L E
Sbjct: 101 GVFLKSGPIESIFLSE 116
>gi|218196310|gb|EEC78737.1| hypothetical protein OsI_18944 [Oryza sativa Indica Group]
Length = 175
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++KD G Y+AV+ L++ EGKVRE G++LFPV F G+I G V K+LKH
Sbjct: 41 RKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKH 100
Query: 62 GVLFNCVSIDMSYLHEN 78
GV I+ +L E
Sbjct: 101 GVFLKSGPIESIFLSEK 117
>gi|57863806|gb|AAS98454.2| putative receptor kinase [Oryza sativa Japonica Group]
Length = 715
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++KD G Y+AV+ L++ EGKVRE G++LFPV F G+I G V K+LKH
Sbjct: 76 RKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKH 135
Query: 62 GVLFNCVSIDMSYLHE 77
GV I+ +L E
Sbjct: 136 GVFLKSGPIESIFLSE 151
>gi|115462207|ref|NP_001054703.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|45267865|gb|AAS55764.1| putative RNA polymerase II [Oryza sativa Japonica Group]
gi|113578254|dbj|BAF16617.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|125550915|gb|EAY96624.1| hypothetical protein OsI_18537 [Oryza sativa Indica Group]
gi|215692867|dbj|BAG88287.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630264|gb|EEE62396.1| hypothetical protein OsJ_17187 [Oryza sativa Japonica Group]
Length = 175
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++KD G Y+AV+ L++ EGKVRE G++LFPV F G++ G V K+LKH
Sbjct: 41 RKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKH 100
Query: 62 GVLFNCVSIDMSYLHEN 78
G+ I+ +L E
Sbjct: 101 GIFLKSGPIESIFLSEK 117
>gi|18403570|ref|NP_566719.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 174
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 9 RRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLK 60
+ K+TKDLG + T LE+ GEGK++E GE+ FPVV F G+I G+VHK+ K
Sbjct: 38 KEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHK 97
Query: 61 HGVLFNCVSIDMSYL 75
GV ++ YL
Sbjct: 98 TGVFLKSGPYEIIYL 112
>gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 9 RRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVV--------FIGKIFQGIVHKMLK 60
+ K+TKDLG + T LE+ GEGK++E GE+ FPVV F G+I G+VHK+ K
Sbjct: 21 KEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHK 80
Query: 61 HGVLFNCVSIDMSYL 75
GV ++ YL
Sbjct: 81 TGVFLKSGPYEIIYL 95
>gi|357134557|ref|XP_003568883.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 175
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++K+ G Y+AV L+ EGKVRE G++LFPV F G+I G V K+LKH
Sbjct: 41 RKASKEHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEILVGSVEKILKH 100
Query: 62 GVLFNCVSIDMSYLHE 77
GV I+ +L E
Sbjct: 101 GVFLKSGPIENVFLSE 116
>gi|326527317|dbj|BAK04600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++ + G Y+AV L++ EGKVRE G++LFPV F G+I G V K+LKH
Sbjct: 41 RKASNEHGYYIAVNELKTISEGKVRELTGDVLFPVTFTCITQRPMKGEILVGSVEKILKH 100
Query: 62 GVLFNCVSIDMSYLHENA 79
GV I+ +L E +
Sbjct: 101 GVFLKSGPIESIFLSEKS 118
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
RK++K+ G Y+AV L+ EGKVRE G++LFPV F G+I G V K+LKH
Sbjct: 41 RKASKEHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEILVGSVDKILKH 100
Query: 62 GVLFNCVSIDMSYLHENA 79
G+ I+ +L E
Sbjct: 101 GMFLKSGPIENIFLSEKT 118
>gi|224107919|ref|XP_002314653.1| predicted protein [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 11 KSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVF--------IGKIFQGIVHKMLKHG 62
K++KD G +LAVT L+S G+G+V +G++LF V F G+I QG+VH+ +HG
Sbjct: 41 KASKDHGYFLAVTNLKSIGKGEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHG 100
Query: 63 VLFNCVSIDMSYL 75
VL C + +L
Sbjct: 101 VLLRCGPVKYIFL 113
>gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 174
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQ--------GIVHKMLKH 61
+K+TKDLG + T LE+ GEGK++E GE+ FPVVF G F+ G+V K+ K
Sbjct: 39 KKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEVVHGVVQKVHKS 98
Query: 62 GVLFNCVSIDMSYL 75
GV ++ YL
Sbjct: 99 GVFLRSGPYEIIYL 112
>gi|242086985|ref|XP_002439325.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
gi|241944610|gb|EES17755.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
Length = 175
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
R+++K+ G Y+AV+ L++ EGKVRE G++LFPV F G++ G V ++LKH
Sbjct: 41 RRASKEHGYYVAVSQLKAISEGKVRELTGDVLFPVSFTCITLKPMKGEVMVGHVDRILKH 100
Query: 62 GVLFNCVSIDMSYLHENA 79
GV ++ +L E +
Sbjct: 101 GVFLKSGPVESIFLAEKS 118
>gi|226493930|ref|NP_001150375.1| LOC100284005 [Zea mays]
gi|194705372|gb|ACF86770.1| unknown [Zea mays]
gi|195638760|gb|ACG38848.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|195658229|gb|ACG48582.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|413944600|gb|AFW77249.1| DNA-directed RNA polymerase II polypeptide isoform 1 [Zea mays]
gi|413944601|gb|AFW77250.1| DNA-directed RNA polymerase II polypeptide isoform 2 [Zea mays]
gi|413944602|gb|AFW77251.1| DNA-directed RNA polymerase II polypeptide isoform 3 [Zea mays]
Length = 175
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 10 RKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKH 61
R+++K+ G Y+AV L++ EGKVRE G++LFPV F G++ G V ++LKH
Sbjct: 41 RRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKH 100
Query: 62 GVLFNCVSIDMSYLHENA 79
GV ++ +L E +
Sbjct: 101 GVFLKSGPVESIFLAEKS 118
>gi|449432628|ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449432630|ref|XP_004134102.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 190
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 9 RRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLK 60
+ K+ KD G +L+VT+L S G+G V+ + + FP+ FI G+I G+V + +
Sbjct: 39 KEKANKDHGYFLSVTSLRSIGKGIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQ 98
Query: 61 HGVLFNCVSIDMSYL 75
G+L C I +L
Sbjct: 99 RGLLLKCGPIKYVFL 113
>gi|168006688|ref|XP_001756041.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692971|gb|EDQ79326.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 11 KSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQGIVHKMLKHGV 63
+ +++ G ++ VTTLE GK+R G ++F V F +F+ I +++L+ V
Sbjct: 40 RCSEEHGFHVTVTTLEDVSPGKIRSGTGSVIFWVTFKCIVFRPIRNEILEAEV 92
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,178,795,022
Number of Sequences: 23463169
Number of extensions: 38710328
Number of successful extensions: 61113
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61054
Number of HSP's gapped (non-prelim): 33
length of query: 79
length of database: 8,064,228,071
effective HSP length: 50
effective length of query: 29
effective length of database: 6,891,069,621
effective search space: 199841019009
effective search space used: 199841019009
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)