BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034902
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZSV1|PARP1_MAIZE Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1
Length = 980
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 2 QQERLTWRRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFP 43
+Q + + R+KS D+ Y + EST EG VR N G+++ P
Sbjct: 188 EQNKGSKRKKSENDIDSYKSARLDESTSEGTVR-NKGQLVDP 228
>sp|Q57840|RPOE1_METJA DNA-directed RNA polymerase subunit E' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoE1 PE=1 SV=1
Length = 187
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 14 KDLGCYLAVTTLESTGEGKVRENAGEMLFPVVF 46
KD+G L++ ++ GEGKV G PVVF
Sbjct: 40 KDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVF 72
>sp|Q47AB5|ARGJ_DECAR Arginine biosynthesis bifunctional protein ArgJ OS=Dechloromonas
aromatica (strain RCB) GN=argJ PE=3 SV=1
Length = 408
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 27 STGEGKVRENAGEMLFPVVFIGKIFQGIVHKMLKHG--VLFNCVSID 71
S G G ++ N ML + I QG++ K++K FNC+++D
Sbjct: 181 SKGAGMIKPNMATMLGFLATDASIAQGMLDKLVKEAADASFNCITVD 227
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 17 GCYLAVTTLESTGEGKVRENAGEMLFPV--------VFIGKIFQGIVHKMLKHG 62
G +AVT +E+ G+G +R+ G + FPV F G+I + +V + K G
Sbjct: 43 GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMG 96
>sp|A4SXQ7|PNP_POLSQ Polyribonucleotide nucleotidyltransferase OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=pnp PE=3 SV=1
Length = 722
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 13 TKDLGCYL------AVTTLESTGEGKVRENAG-EMLFPVVFIGKIFQGIVHKMLKHGVLF 65
TK+ GC + VT ++ EG A E + +GKI++G V K+L+ G L
Sbjct: 581 TKETGCSIDIKDDGTVTIASTSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALV 640
Query: 66 NCVSIDMSYLH 76
N + LH
Sbjct: 641 NILPGKDGLLH 651
>sp|B1XUJ5|PNP_POLNS Polyribonucleotide nucleotidyltransferase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=pnp
PE=3 SV=1
Length = 722
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 13 TKDLGCYL------AVTTLESTGEGKVRENAG-EMLFPVVFIGKIFQGIVHKMLKHGVLF 65
TK+ GC + VT ++ EG A E + +GKI++G V K+L+ G L
Sbjct: 581 TKETGCSIDIKDDGTVTIASTSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALV 640
Query: 66 NCVSIDMSYLH 76
N + LH
Sbjct: 641 NILPGKDGLLH 651
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 13 TKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQ 52
T G +AVTT+++ G G ++ G +L+PV + +F+
Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFR 78
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 13 TKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQ 52
T G +AVTT+++ G G ++ G +L+PV + +F+
Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFR 78
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 13 TKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQ 52
T G +AVTT+++ G G ++ G +L+PV + +F+
Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFR 78
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus
GN=POLR2G PE=2 SV=1
Length = 172
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 13 TKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQ 52
T G +AVTT+++ G G ++ G +L+PV + +F+
Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFR 78
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 13 TKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFIGKIFQ 52
T G +AVTT+++ G G ++ G +L+PV + +F+
Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFR 78
>sp|A1WLP8|PNP_VEREI Polyribonucleotide nucleotidyltransferase OS=Verminephrobacter
eiseniae (strain EF01-2) GN=pnp PE=3 SV=1
Length = 757
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 10 RKSTKDLGCYLAV-----TTLESTGEGK--VRENAGEMLFPVVFIGKIFQGIVHKMLKHG 62
R T++ GC + + T+ +T K + + E + + IGKI++G V K+L G
Sbjct: 579 RALTEETGCQINIEEDGTITIAATDAAKADIAKRRIEQITAEIEIGKIYEGPVTKLLDFG 638
Query: 63 VLFNCVSIDMSYLH 76
L N + LH
Sbjct: 639 ALINLLPGKDGLLH 652
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,446,996
Number of Sequences: 539616
Number of extensions: 952736
Number of successful extensions: 1744
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 13
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)