Query 034902
Match_columns 79
No_of_seqs 100 out of 188
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ayh_B DNA-directed RNA polyme 99.9 5E-22 1.7E-26 141.0 9.2 77 3-79 29-113 (203)
2 2ckz_B C25, DNA-directed RNA p 99.9 8.2E-22 2.8E-26 142.2 9.5 77 3-79 29-114 (218)
3 3h0g_G DNA-directed RNA polyme 99.8 7.5E-21 2.6E-25 131.7 4.1 75 3-78 30-114 (172)
4 4ayb_E DNA-directed RNA polyme 99.8 1.2E-19 4E-24 125.2 8.4 72 4-75 30-109 (180)
5 1go3_E DNA-directed RNA polyme 99.7 2E-17 6.8E-22 114.4 8.6 72 5-77 31-110 (187)
6 2c35_B Human RPB7, DNA-directe 99.7 2.2E-17 7.7E-22 113.3 8.3 73 5-78 31-111 (172)
7 2b8k_G B16, DNA-directed RNA p 99.7 8.7E-17 3E-21 115.8 7.8 74 4-78 30-113 (215)
8 1y14_B B16, RPB7, DNA-directed 99.7 4.1E-17 1.4E-21 112.2 5.4 73 5-78 31-113 (171)
9 2rf4_A DNA-directed RNA polyme 99.1 7.2E-11 2.5E-15 84.4 5.7 67 12-79 73-161 (214)
10 2eqs_A ATP-dependent RNA helic 97.3 0.00035 1.2E-08 44.1 4.3 30 48-78 13-46 (103)
11 1wi5_A RRP5 protein homolog; S 97.2 0.00036 1.2E-08 44.8 4.4 29 48-76 22-51 (119)
12 2bh8_A 1B11; transcription, mo 97.1 0.00072 2.5E-08 42.9 4.8 28 48-76 62-90 (101)
13 2khi_A 30S ribosomal protein S 97.0 0.001 3.5E-08 42.5 5.0 30 48-78 31-61 (115)
14 2cqo_A Nucleolar protein of 40 97.0 0.00069 2.4E-08 44.0 4.2 29 48-77 23-53 (119)
15 2k52_A Uncharacterized protein 97.0 0.00098 3.3E-08 40.0 4.5 29 48-77 6-35 (80)
16 1luz_A Protein K3, protein K2; 96.7 0.002 6.7E-08 39.9 4.3 29 48-78 12-43 (88)
17 3go5_A Multidomain protein wit 96.6 0.0022 7.5E-08 47.4 4.3 30 48-78 70-102 (285)
18 2a19_A EIF-2- alpha, eukaryoti 96.6 0.003 1E-07 43.7 4.8 30 48-78 16-48 (175)
19 1kl9_A Eukaryotic translation 96.6 0.0025 8.4E-08 44.5 4.3 29 48-77 16-47 (182)
20 2khj_A 30S ribosomal protein S 96.5 0.0021 7.2E-08 40.5 3.3 28 48-76 32-60 (109)
21 2k4k_A GSP13, general stress p 96.4 0.0044 1.5E-07 40.5 4.6 30 48-78 8-38 (130)
22 1q8k_A Eukaryotic translation 95.6 0.015 5E-07 43.7 4.6 30 48-78 14-46 (308)
23 3aev_A Translation initiation 95.6 0.016 5.4E-07 42.7 4.7 30 48-78 12-44 (275)
24 2je6_I RRP4, exosome complex R 95.3 0.018 6.1E-07 41.8 4.2 28 48-76 75-103 (251)
25 2z0s_A Probable exosome comple 95.1 0.02 6.9E-07 40.8 3.9 29 48-77 67-96 (235)
26 2ja9_A Exosome complex exonucl 95.0 0.032 1.1E-06 38.7 4.6 30 48-78 8-39 (175)
27 2ba0_A Archeal exosome RNA bin 95.0 0.03 1E-06 40.0 4.5 30 48-78 58-88 (229)
28 3cw2_C Translation initiation 94.8 0.014 4.7E-07 42.6 2.3 29 48-77 12-43 (266)
29 3cdi_A Polynucleotide phosphor 94.3 0.0077 2.6E-07 49.6 0.0 60 13-76 586-656 (723)
30 3bzc_A TEX; helix-turn-helix, 94.2 0.028 9.7E-07 46.8 3.1 31 48-78 655-685 (785)
31 3go5_A Multidomain protein wit 94.1 0.06 2.1E-06 39.6 4.4 30 48-78 7-36 (285)
32 2nn6_I 3'-5' exoribonuclease C 94.0 0.044 1.5E-06 38.6 3.4 21 48-68 82-102 (209)
33 4aid_A Polyribonucleotide nucl 93.7 0.0027 9.1E-08 52.6 -3.8 49 24-72 604-663 (726)
34 3m7n_A Putative uncharacterize 93.4 0.056 1.9E-06 37.0 3.0 22 48-69 58-79 (179)
35 2nn6_H Exosome complex exonucl 91.3 0.17 5.8E-06 37.9 3.6 25 48-72 96-121 (308)
36 3psi_A Transcription elongatio 91.2 0.22 7.4E-06 43.4 4.6 30 48-77 903-932 (1219)
37 1hh2_P NUSA, N utilization sub 90.3 0.32 1.1E-05 37.0 4.3 29 48-77 135-163 (344)
38 1e3p_A Guanosine pentaphosphat 88.8 0.081 2.8E-06 43.9 -0.0 24 48-71 668-692 (757)
39 3psf_A Transcription elongatio 87.7 0.1 3.5E-06 44.7 0.0 22 48-69 906-927 (1030)
40 2bx2_L Ribonuclease E, RNAse E 87.3 1.9 6.5E-05 34.4 7.0 31 48-78 46-78 (517)
41 2id0_A Exoribonuclease 2; RNAs 86.0 0.81 2.8E-05 36.8 4.3 28 48-76 559-590 (644)
42 2wp8_J Exosome complex exonucl 79.6 1.7 5.8E-05 36.9 4.0 23 48-70 887-909 (977)
43 2vnu_D Exosome complex exonucl 72.2 3.2 0.00011 34.0 3.6 23 48-70 670-692 (760)
44 1k0r_A NUSA; two component arr 68.2 2.3 8E-05 32.7 1.9 25 48-72 131-163 (366)
45 2asb_A Transcription elongatio 55.3 5.7 0.0002 29.1 1.9 22 48-69 8-33 (251)
46 1uwv_A 23S rRNA (uracil-5-)-me 55.0 41 0.0014 24.9 6.7 47 18-66 17-65 (433)
47 1yvc_A MRR5; structure, autost 54.1 28 0.00097 19.8 5.3 48 18-67 19-68 (70)
48 1yez_A MM1357; MAR30, autostru 53.4 28 0.00097 19.6 5.9 48 18-67 17-66 (68)
49 2cqa_A RUVB-like 2; TIP48, TIP 33.0 28 0.00096 22.0 2.3 13 48-60 11-23 (95)
50 2yty_A Cold shock domain-conta 25.7 1E+02 0.0034 18.5 3.9 29 49-78 17-47 (88)
51 3qk9_A Mitochondrial import in 21.3 90 0.0031 21.9 3.4 49 18-67 133-196 (222)
52 1a62_A RHO; transcription term 21.0 67 0.0023 20.7 2.5 27 51-78 51-84 (130)
No 1
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=99.87 E-value=5e-22 Score=140.98 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=72.8
Q ss_pred hhhheeeeeeccceeEEEEEeEeeeeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEeCCCceEE
Q 034902 3 QERLTWRRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNCVSIDMSY 74 (79)
Q Consensus 3 ~~~~~~~~~~~~~~G~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~GPld~vF 74 (79)
+-+..|+|||.+++|++|||+++.++++|+|.||||+++|+|+|+ ||+++|+|++|+++|+|+++||++++|
T Consensus 29 ~L~~~~egkv~~~~Gl~I~v~di~~i~~g~I~~GdG~~~~~V~fk~~~f~p~~GEv~~G~Vs~vt~~GifV~lg~~eglv 108 (203)
T 3ayh_B 29 EIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIF 108 (203)
T ss_dssp HHHHHHTTEEETTTEEEEEEEEEEEECCCEECTTTCCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECSSCCCEE
T ss_pred HhhhhhCCEEeCCccEEEEEEEeeEecccEEeCCCCCEEEEEEEEEEEEccCCCCEEEEEEEEEeccEEEEEEeCceEEE
Confidence 336789999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EecCC
Q 034902 75 LHENA 79 (79)
Q Consensus 75 vS~~~ 79 (79)
+++++
T Consensus 109 ~~~~l 113 (203)
T 3ayh_B 109 IPKDM 113 (203)
T ss_dssp EEGGG
T ss_pred EcHHh
Confidence 98763
No 2
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.2e-22 Score=142.18 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=73.0
Q ss_pred hhhheeeeeeccceeEEEEEeEeeeeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEe-CCCceE
Q 034902 3 QERLTWRRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNC-VSIDMS 73 (79)
Q Consensus 3 ~~~~~~~~~~~~~~G~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~-GPld~v 73 (79)
+-+..|++||.+++|++|||+++.++++|+|.||||+++|+|+|+ ||+++|+|++|+++|+|+++ ||++++
T Consensus 29 ~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~egl 108 (218)
T 2ckz_B 29 QLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDI 108 (218)
T ss_dssp HHHHHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECTTSCCCE
T ss_pred HHHHHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCCCCCEEEEEEEEEccCcEEEEccCccceE
Confidence 446689999999999999999999999999999999999999999 99999999999999999999 999999
Q ss_pred EEecCC
Q 034902 74 YLHENA 79 (79)
Q Consensus 74 FvS~~~ 79 (79)
|+++++
T Consensus 109 v~~s~l 114 (218)
T 2ckz_B 109 FIPQNM 114 (218)
T ss_dssp EEETTT
T ss_pred EEcHHH
Confidence 998764
No 3
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.81 E-value=7.5e-21 Score=131.69 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=71.0
Q ss_pred hhhheeeeeeccceeEEEEEe--EeeeeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEeCCCce
Q 034902 3 QERLTWRRKSTKDLGCYLAVT--TLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNCVSIDM 72 (79)
Q Consensus 3 ~~~~~~~~~~~~~~G~iv~V~--~i~~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~GPld~ 72 (79)
+=+..|.|+|.+++|++|+|+ +++++++|+|.||||+++|+|+|+ ||+++|.|++|++||+|+++||++
T Consensus 30 ~l~~~~~g~vi~~~G~~I~i~~idi~~i~~G~I~~gdg~~~~~v~f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~~~~- 108 (172)
T 3h0g_G 30 KLLADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLN- 108 (172)
T ss_dssp HHHHHHTTCEETTTEEEEEECTTTSEEECCCEECTTTCCEEEEEEEEEEEECCCTTCEEECCCCEEETTEEECCBTTBC-
T ss_pred HHHHHhCCcCcCCccEEEEEEeeeeeEeeCCEEECCCCcEEEEEEEEEeeeccCCCCEEEEEEEEEEcceEEEEeCCeE-
Confidence 345678999999999999999 999999999999999999999999 999999999999999999999998
Q ss_pred EEEecC
Q 034902 73 SYLHEN 78 (79)
Q Consensus 73 vFvS~~ 78 (79)
.||+.|
T Consensus 109 glVh~s 114 (172)
T 3h0g_G 109 VFVSSH 114 (172)
T ss_dssp CEEEGG
T ss_pred EEEEHH
Confidence 999876
No 4
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.80 E-value=1.2e-19 Score=125.23 Aligned_cols=72 Identities=26% Similarity=0.323 Sum_probs=67.6
Q ss_pred hhheeeeeeccceeEEEEEeEeeeeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEeCCCceEEE
Q 034902 4 ERLTWRRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNCVSIDMSYL 75 (79)
Q Consensus 4 ~~~~~~~~~~~~~G~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~GPld~vFv 75 (79)
=+..|+++|.+++|++|+++++.++++|+|.+|||+++|+++|+ ||+++|.|++|++||+|+++||+|+++.
T Consensus 30 L~~k~~~kv~~~~G~~I~v~di~~~~~g~I~~gdg~~~~~v~~~~iv~~p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh 109 (180)
T 4ayb_E 30 LRQQYQEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVH 109 (180)
T ss_dssp HHHHTTTCBCSSSCEEEEEEEEEEEEEEEECSSCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcCeEcCCCcEEEEeeeEeecCceeEccCchHHHHHHhhheeeeeccCCCEEEEEEeeeccceEEEEECCccceEE
Confidence 35678999999999999999999999999999999999999999 9999999999999999999999986543
No 5
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.72 E-value=2e-17 Score=114.42 Aligned_cols=72 Identities=26% Similarity=0.479 Sum_probs=67.5
Q ss_pred hheeeeeeccceeEEEEEeEeeeeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEeCCCceEEEe
Q 034902 5 RLTWRRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNCVSIDMSYLH 76 (79)
Q Consensus 5 ~~~~~~~~~~~~G~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~GPld~vFvS 76 (79)
+..|+|||++++|++|++++++++++|+|.++||++++++.|+ ||+++|.|++++++|+|+++||++ -+++
T Consensus 31 ~~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~~~~~~i~~~~~~Gev~~G~V~~v~~~G~fV~l~~~e-glvh 109 (187)
T 1go3_E 31 MEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLD-GLIH 109 (187)
T ss_dssp HHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECSSSE-EEEE
T ss_pred HHHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEEEEEEEEEEccCCCCEEEEEEEEEeCcEEEEEEcCcc-EEEE
Confidence 5678999999999999999999999999999999999999998 999999999999999999999998 5555
Q ss_pred c
Q 034902 77 E 77 (79)
Q Consensus 77 ~ 77 (79)
.
T Consensus 110 i 110 (187)
T 1go3_E 110 V 110 (187)
T ss_dssp G
T ss_pred h
Confidence 4
No 6
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.71 E-value=2.2e-17 Score=113.27 Aligned_cols=73 Identities=22% Similarity=0.443 Sum_probs=69.1
Q ss_pred hheeeeeeccceeEEEEEeEeeeeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEeCCCceEEEe
Q 034902 5 RLTWRRKSTKDLGCYLAVTTLESTGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNCVSIDMSYLH 76 (79)
Q Consensus 5 ~~~~~~~~~~~~G~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~GPld~vFvS 76 (79)
+..+.+++.++.|++|++.+++++++|+|.||||.+++++.|+ ||+++|.|++|++||+||++||.+ .||+
T Consensus 31 ~~~~~~~vi~~~G~~I~~~di~~i~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG~fV~l~~~~-glvh 109 (172)
T 2c35_B 31 FTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMS-CFIS 109 (172)
T ss_dssp HHHHTTCEETTTEEEEEEEEEEEECCCBCCTTCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEEETTEE-EEEE
T ss_pred HHHHcCcCcCCceEEEEEEEeeecCCeEEeCCCCCEEEEEEEEEEEeeCCCCCEEEEEEEEEeCCEEEEEECCEE-EEEE
Confidence 4567789999999999999999999999999999999999999 999999999999999999999998 9998
Q ss_pred cC
Q 034902 77 EN 78 (79)
Q Consensus 77 ~~ 78 (79)
.|
T Consensus 110 is 111 (172)
T 2c35_B 110 RH 111 (172)
T ss_dssp GG
T ss_pred HH
Confidence 76
No 7
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.68 E-value=8.7e-17 Score=115.83 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=69.1
Q ss_pred hhheeeeeeccceeEEEEEeEee--eeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEeCCCceE
Q 034902 4 ERLTWRRKSTKDLGCYLAVTTLE--STGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNCVSIDMS 73 (79)
Q Consensus 4 ~~~~~~~~~~~~~G~iv~V~~i~--~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~GPld~v 73 (79)
=+..|.|+|.++.|++|++++|+ ++++|+|.||||.++|++.|+ ||+++|.|++|++||+||++||.| .
T Consensus 30 I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~i~~~p~vGev~~G~V~~vt~fG~FVelg~~d-G 108 (215)
T 2b8k_G 30 LLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-V 108 (215)
T ss_dssp HHHSSTTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCEEEECCCTTEEEEEEEEEEETTEEEEECTTSE-E
T ss_pred CCHHHCCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhhheeccCCCCEEEEEEEEEecceEEEEecCcE-E
Confidence 35578899999999999999999 999999999999999999999 999999999999999999999976 8
Q ss_pred EEecC
Q 034902 74 YLHEN 78 (79)
Q Consensus 74 FvS~~ 78 (79)
||+.|
T Consensus 109 lVhiS 113 (215)
T 2b8k_G 109 FVTKH 113 (215)
T ss_dssp EEEGG
T ss_pred EEEHH
Confidence 88865
No 8
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.67 E-value=4.1e-17 Score=112.25 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=56.2
Q ss_pred hheeeeeeccceeEEEEEeEee--eeCCceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEEEeCCCceEE
Q 034902 5 RLTWRRKSTKDLGCYLAVTTLE--STGEGKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLFNCVSIDMSY 74 (79)
Q Consensus 5 ~~~~~~~~~~~~G~iv~V~~i~--~i~~G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv~~GPld~vF 74 (79)
+..+.++|.++.|++|++++++ ++++|+|.||||++++++.|+ ||+++|.|++|++||+|+++||.| .|
T Consensus 31 ~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG~FV~l~~~d-gl 109 (171)
T 1y14_B 31 LEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMK-VF 109 (171)
T ss_dssp HHHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEECCCTTCEEEEEEEEEETTEEEEEETTEE-EE
T ss_pred HHHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEccCCCCCEEEEEEEEEecCEEEEEecCeE-EE
Confidence 4567889999999999999999 999999999999999999998 999999999999999999999965 88
Q ss_pred EecC
Q 034902 75 LHEN 78 (79)
Q Consensus 75 vS~~ 78 (79)
|+.|
T Consensus 110 vhis 113 (171)
T 1y14_B 110 VTKH 113 (171)
T ss_dssp EEGG
T ss_pred EEHH
Confidence 8876
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.12 E-value=7.2e-11 Score=84.43 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=50.1
Q ss_pred eccc-eeEEEEEeEeeeeCC------------ceEEcCCCceEEEEEec--------CeEEEEEEEEEeeeeEEE-EeCC
Q 034902 12 STKD-LGCYLAVTTLESTGE------------GKVRENAGEMLFPVVFI--------GKIFQGIVHKMLKHGVLF-NCVS 69 (79)
Q Consensus 12 ~~~~-~G~iv~V~~i~~i~~------------G~I~~gdG~~~~~V~f~--------~EVvdG~V~~V~~~G~Fv-~~GP 69 (79)
...+ .|+++|+.++..+++ |+|.+|+|.++++|+|+ ||+++|.|+.+++.|+.+ -.||
T Consensus 73 y~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~~~g~~~~~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G~ 152 (214)
T 2rf4_A 73 YNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHDA 152 (214)
T ss_dssp EETTTTEEEEEEEEEETTSCCC-----------------CCCEEEEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETTT
T ss_pred ccCCCCEEEEEEECeEeccCCCcCccccccceeEEeCCCceEEEEEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeCC
Confidence 3444 499999999986665 79999999999999999 999999999999955444 3799
Q ss_pred CceEEEecCC
Q 034902 70 IDMSYLHENA 79 (79)
Q Consensus 70 ld~vFvS~~~ 79 (79)
++ +||+++.
T Consensus 153 Fn-~~Ip~~~ 161 (214)
T 2rf4_A 153 FN-ASIKKNN 161 (214)
T ss_dssp EE-EEECSTT
T ss_pred EE-EEEcHHH
Confidence 97 8999863
No 10
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00035 Score=44.08 Aligned_cols=30 Identities=20% Similarity=0.494 Sum_probs=25.8
Q ss_pred CeEEEEEEEEEeeeeEEEEeC----CCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV----SIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G----Pld~vFvS~~ 78 (79)
|++++|.|++|.+||+|++++ +.+ -||+.+
T Consensus 13 G~i~~G~V~~v~~fG~FV~l~~~~~~~~-Glvhis 46 (103)
T 2eqs_A 13 GDIYNGKVTSIMQFGCFVQLEGLRKRWE-GLVHIS 46 (103)
T ss_dssp TCEEEEEEEEECSSCEEEEECSSSSCCE-EEECGG
T ss_pred CCEEEEEEEEEeccEEEEEEcCCCCCeE-EEEEHH
Confidence 899999999999999999999 565 566543
No 11
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=97.24 E-value=0.00036 Score=44.78 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=24.6
Q ss_pred CeEEEEEEEEEeeeeEEEEeC-CCceEEEe
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV-SIDMSYLH 76 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G-Pld~vFvS 76 (79)
|++++|.|++|.+||+|++++ +-.+.|+.
T Consensus 22 G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~ 51 (119)
T 1wi5_A 22 GMLLTGTVSSLEDHGYLVDIGVDGTRAFLP 51 (119)
T ss_dssp TCEEEEEEEEECSSEEEEECCCSSCEEEEE
T ss_pred CCEEEEEEEEEeCceEEEEECCCCeEEEEE
Confidence 999999999999999999999 34455554
No 12
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.13 E-value=0.00072 Score=42.85 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=23.8
Q ss_pred CeEEEEEEEEEeeeeEEEEe-CCCceEEEe
Q 034902 48 GKIFQGIVHKMLKHGVLFNC-VSIDMSYLH 76 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~-GPld~vFvS 76 (79)
+++++++|+++.++|+|+++ +.++| +|+
T Consensus 62 Ge~V~g~V~~i~~fG~fv~l~~~~eG-lvh 90 (101)
T 2bh8_A 62 GDRVEGKIKSITDFGIFIGLDGGIDG-LVH 90 (101)
T ss_dssp TCEEEEEEEECCSEEEEECTTSCEEE-EEE
T ss_pred CCEEEEEEEEeCCcEEEEEcCCCceE-EEE
Confidence 89999999999999999999 55664 443
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.04 E-value=0.001 Score=42.54 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=26.0
Q ss_pred CeEEEEEEEEEeeeeEEEEeCC-CceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVS-IDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GP-ld~vFvS~~ 78 (79)
|++++|.|++|+++|+||+++| ++ -||+.+
T Consensus 31 G~~~~G~V~~v~~~G~FV~l~~~~~-Glvhis 61 (115)
T 2khi_A 31 GTKLTGRVTNLTDYGCFVEIEEGVE-GLVHVS 61 (115)
T ss_dssp SCEEEEEEEEEETTEEEEECSTTCE-EEEETT
T ss_pred CCEEEEEEEEEECCEEEEEECCCCE-EEEEHH
Confidence 9999999999999999999987 54 677654
No 14
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.04 E-value=0.00069 Score=44.00 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred CeEEEEEEEEEeeeeEEEEeCCC--ceEEEec
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVSI--DMSYLHE 77 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GPl--d~vFvS~ 77 (79)
|++++|.|++|++||+||++.++ + -||+.
T Consensus 23 G~iv~G~V~~I~~fGaFV~l~g~~~~-Glvhi 53 (119)
T 2cqo_A 23 YTIFQGEVAMVTDYGAFIKIPGCRKQ-GLVHR 53 (119)
T ss_dssp TCEEEEEEEEEETTEEEEECTTCSSC-EEEEH
T ss_pred CCEEEEEEEEEeCceEEEEECCCcEE-EEEEH
Confidence 99999999999999999999764 6 56653
No 15
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.00098 Score=40.00 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=24.6
Q ss_pred CeEEEEEEEEEeeeeEEEEeCC-CceEEEec
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVS-IDMSYLHE 77 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GP-ld~vFvS~ 77 (79)
|++++|.|+++.++|+|++++| .+ -|++.
T Consensus 6 G~iv~G~V~~v~~~G~fV~l~~~~~-Gllh~ 35 (80)
T 2k52_A 6 GKFYKGVVTRIEKYGAFINLNEQVR-GLLRP 35 (80)
T ss_dssp TCEEEEEEEEEETTEEEEEEETTEE-EEECG
T ss_pred CCEEEEEEEEEeCCEEEEEECCCCE-EEEEH
Confidence 8999999999999999999994 54 55544
No 16
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=96.73 E-value=0.002 Score=39.89 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.0
Q ss_pred CeEEEEEEEEEeeeeEEEEeC---CCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV---SIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G---Pld~vFvS~~ 78 (79)
|++++|.|+ |++||+|+++. .++ -+|+.|
T Consensus 12 G~~~~G~V~-v~~fG~FVel~~~~~~e-GLvhis 43 (88)
T 1luz_A 12 GDVIKGRVY-EKDYALYIYLFDYPHFE-AILAES 43 (88)
T ss_dssp TCEEEEEEE-EETTEEEEEETTCTTSE-EEEGGG
T ss_pred CCEEEEEEE-EEccEEEEEECCCCCeE-EEEEee
Confidence 999999999 99999999995 366 455543
No 17
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=96.58 E-value=0.0022 Score=47.36 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=27.1
Q ss_pred CeEEEEEEEEEe-eeeEEEEeCC--CceEEEecC
Q 034902 48 GKIFQGIVHKML-KHGVLFNCVS--IDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~-~~G~Fv~~GP--ld~vFvS~~ 78 (79)
|+++.|.|++++ ++|+|+++|. .| .||+.|
T Consensus 70 G~~~~g~V~~v~~~~GaFVdiG~~~~d-~lvp~s 102 (285)
T 3go5_A 70 DQFGWGRVTEVRKDLGVFVDTGLPDKE-IVVSLD 102 (285)
T ss_dssp SSCEEEEEEEEETTTEEEEECSCTTCC-EEEEGG
T ss_pred CCEEEEEEEEEccCceEEEEECCCCcE-EEEEHH
Confidence 999999999999 7999999994 77 898864
No 18
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=96.58 E-value=0.003 Score=43.68 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=25.5
Q ss_pred CeEEEEEEEEEeeeeEEEEe---CCCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNC---VSIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~---GPld~vFvS~~ 78 (79)
|++++|.|++|.+||+||++ +.++ -+|+.|
T Consensus 16 G~iv~G~V~~i~~fGaFV~L~e~~gve-GLvhiS 48 (175)
T 2a19_A 16 DDIVMVNVQQIAEMGAYVKLLEYDNIE-GMILLS 48 (175)
T ss_dssp TCEEEEEEEEEETTEEEEEETTTTTCE-EEEECC
T ss_pred CCEEEEEEEEEecceEEEEEcCCCCcE-EEEEHH
Confidence 89999999999999999999 6676 455543
No 19
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.58 E-value=0.0025 Score=44.48 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=25.0
Q ss_pred CeEEEEEEEEEeeeeEEEEe---CCCceEEEec
Q 034902 48 GKIFQGIVHKMLKHGVLFNC---VSIDMSYLHE 77 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~---GPld~vFvS~ 77 (79)
|++++|.|++|++||+||++ ++++| +|+.
T Consensus 16 G~iv~G~V~~I~~fGaFV~L~e~~g~eG-Lvhi 47 (182)
T 1kl9_A 16 EDVVMVNVRSIAEMGAYVSLLEYNNIEG-MILL 47 (182)
T ss_dssp TCEEEEEEEEECSSEEEEEETTTTTEEE-EEEG
T ss_pred CCEEEEEEEEEeccEEEEEEccCCCcEE-EEEH
Confidence 89999999999999999999 67874 4543
No 20
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=96.51 E-value=0.0021 Score=40.54 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.0
Q ss_pred CeEEEEEEEEEeeeeEEEEeCC-CceEEEe
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVS-IDMSYLH 76 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GP-ld~vFvS 76 (79)
|+++.|.|++|.++|+||+++| ++ -|++
T Consensus 32 G~iv~G~V~~v~~~G~fV~l~~~~~-Gll~ 60 (109)
T 2khj_A 32 GAIVTGKVTAVDAKGATVELADGVE-GYLR 60 (109)
T ss_dssp SSEEEEEEEEECSSCEEEECSTTCB-CCBC
T ss_pred CCEEEEEEEEEECCeEEEEECCCCE-EEEE
Confidence 9999999999999999999996 44 4444
No 21
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=96.42 E-value=0.0044 Score=40.52 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=24.9
Q ss_pred CeEEEEEEEEEeeeeEEEEeC-CCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV-SIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G-Pld~vFvS~~ 78 (79)
|++++|.|++|+++|+||++. ..+ -||+.+
T Consensus 8 G~iv~G~V~~i~~~G~FV~l~~~~~-Glihis 38 (130)
T 2k4k_A 8 GSVYTGKVTGLQAYGAFVALDEETQ-GLVHIS 38 (130)
T ss_dssp TCEEEEEEEEEETTEEEEEEETTEE-EEEEGG
T ss_pred CCEEEEEEEEEeCCeEEEEECCCcE-EEEEHH
Confidence 899999999999999999994 554 566543
No 22
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=95.58 E-value=0.015 Score=43.65 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.5
Q ss_pred CeEEEEEEEEEeeeeEEEEeC---CCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV---SIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G---Pld~vFvS~~ 78 (79)
|+++.|.|++|++||+||+++ .++ -||+.|
T Consensus 14 G~iv~G~V~~I~~fGaFV~L~ey~gve-GLvhiS 46 (308)
T 1q8k_A 14 EDVVMVNVRSIQEMGAYVSLLEYNNIE-GMIHLS 46 (308)
T ss_dssp CCEEEEEEEEEETTEEEEESCTTTSCC-EEECGG
T ss_pred CCEEEEEEEEEeCcEEEEEECCCCCeE-EEEEhH
Confidence 899999999999999999995 676 566543
No 23
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=95.57 E-value=0.016 Score=42.65 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=25.5
Q ss_pred CeEEEEEEEEEeeeeEEEEeC---CCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV---SIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G---Pld~vFvS~~ 78 (79)
|++++|.|++|.+||+||+++ .++ -|++.|
T Consensus 12 Gdiv~G~V~~I~~fGaFV~L~e~~gie-GlIhiS 44 (275)
T 3aev_A 12 GEFVVATVKRIHNYGAFLELDEYPGKE-AFMHIS 44 (275)
T ss_dssp TCEEEEEEEEEETTEEEEEETTSTTCE-EEEEGG
T ss_pred CCEEEEEEEEEECcEEEEEECCCCCeE-EEEEHH
Confidence 999999999999999999997 565 566543
No 24
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=95.33 E-value=0.018 Score=41.75 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.2
Q ss_pred CeEEEEEEEEEeeeeEEEEeC-CCceEEEe
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV-SIDMSYLH 76 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G-Pld~vFvS 76 (79)
|++|.|.|++++++|+||++| |++ -+|+
T Consensus 75 GDiV~G~V~~v~~~ga~VdI~~~~~-GlL~ 103 (251)
T 2je6_I 75 NDIVIGLVEDVEIYGWVVDIKAPYK-AYLP 103 (251)
T ss_dssp TCEEEEEEEEECSSEEEEECSSSSC-EEEE
T ss_pred CCEEEEEEEEEeCceEEEEcCCCeE-EEEE
Confidence 999999999999999999999 787 4554
No 25
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=95.11 E-value=0.02 Score=40.79 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=25.7
Q ss_pred CeEEEEEEEEEeeeeEEEEeC-CCceEEEec
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV-SIDMSYLHE 77 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G-Pld~vFvS~ 77 (79)
|++|.|.|++++++|+||++| |++ -+++.
T Consensus 67 GDiV~G~V~~v~~~~~~V~I~~~~~-g~l~i 96 (235)
T 2z0s_A 67 GDVVIGLIQSVGIMNWFVDINSPYV-AVLSV 96 (235)
T ss_dssp TCCEEEEEEEECSSEEEEECSSSSC-EEEEH
T ss_pred CCEEEEEEEEEeCCeEEEEeCCCeE-EEEEH
Confidence 999999999999999999999 787 55543
No 26
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=95.03 E-value=0.032 Score=38.69 Aligned_cols=30 Identities=7% Similarity=0.028 Sum_probs=26.4
Q ss_pred CeEEEEEEEEEeeeeEEEEeCC--CceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVS--IDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GP--ld~vFvS~~ 78 (79)
|++|.|+|+++...++++++|| ++ .+++.+
T Consensus 8 gDvViG~V~~v~~~~~~VdI~~~~~~-a~L~~s 39 (175)
T 2ja9_A 8 NDFVIGVIIGTFSDSYKVSLQNFSSS-VSLSYM 39 (175)
T ss_dssp TCEEEEEEEEECSSEEEEESSTTSCC-EEEETT
T ss_pred cCEEEEEEEEEECcEEEEEECCCCcc-EEEEHH
Confidence 8999999999999999999999 65 666654
No 27
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.02 E-value=0.03 Score=39.97 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=26.3
Q ss_pred CeEEEEEEEEEeeeeEEEEeC-CCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV-SIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G-Pld~vFvS~~ 78 (79)
|++|.|.|++++++|+||++| |.+ -+++.+
T Consensus 58 GDiV~G~V~~v~~~~a~V~I~~~~~-g~l~is 88 (229)
T 2ba0_A 58 GDVVIGIIREVAANGWAVDIYSPYQ-AFLPVS 88 (229)
T ss_dssp TCEEEEEEEEECSSEEEEECSSSSC-EEEEGG
T ss_pred CCEEEEEEEEEeCCeEEEEeCCCeE-EEEEHH
Confidence 999999999999999999999 787 456543
No 28
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=94.77 E-value=0.014 Score=42.64 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=24.5
Q ss_pred CeEEEEEEEEEeeeeEEEEeC---CCceEEEec
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV---SIDMSYLHE 77 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G---Pld~vFvS~ 77 (79)
|+++.|.|++|.++|+||+++ ..+ -||+.
T Consensus 12 G~iv~G~V~~I~~~GaFV~l~e~~~~~-Glihi 43 (266)
T 3cw2_C 12 GEILIATVKQVFDYGSYVSLDEYGGLQ-AFLPW 43 (266)
T ss_dssp TCEEEEEEEECCSSSBEEEETTTTSEE-CBBCG
T ss_pred CCEEEEEEEEEeccEEEEEEcCCCCeE-EEEEh
Confidence 999999999999999999995 454 55554
No 29
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.29 E-value=0.0077 Score=49.64 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=0.0
Q ss_pred ccceeEEEEEeEeeeeCCceEEcCCCceEEEE---------Eec-CeEEEEEEEEEeeeeEEEEeCC-CceEEEe
Q 034902 13 TKDLGCYLAVTTLESTGEGKVRENAGEMLFPV---------VFI-GKIFQGIVHKMLKHGVLFNCVS-IDMSYLH 76 (79)
Q Consensus 13 ~~~~G~iv~V~~i~~i~~G~I~~gdG~~~~~V---------~f~-~EVvdG~V~~V~~~G~Fv~~GP-ld~vFvS 76 (79)
..++|.. +||.+.+.-.|...|....... .+. |++++|.|+++.+||+||+++| .+ -||+
T Consensus 586 ~~~~G~~---IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~e-GLvH 656 (723)
T 3cdi_A 586 TEETGTT---IEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE-GLVH 656 (723)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ehhhCce---EEecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCce-EEEE
Confidence 4456643 3555555555555666554333 112 9999999999999999999987 44 4444
No 30
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=94.16 E-value=0.028 Score=46.80 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=25.7
Q ss_pred CeEEEEEEEEEeeeeEEEEeCCCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVSIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GPld~vFvS~~ 78 (79)
|++++|.|++|++||+||++|+-.--+|+.|
T Consensus 655 G~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS 685 (785)
T 3bzc_A 655 GMVLEGVVTNVTNFGAFVDIGVHQDGLVHIS 685 (785)
T ss_dssp TCBCCCEEEEEETTEEEEECSSSSEEEEETT
T ss_pred CCEEEEEEEEEecCCeEEEeCCCcEEEEEHH
Confidence 9999999999999999999997433555543
No 31
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=94.07 E-value=0.06 Score=39.61 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=26.5
Q ss_pred CeEEEEEEEEEeeeeEEEEeCCCceEEEecC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVSIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GPld~vFvS~~ 78 (79)
|+++.|.|++++++|+|+++|-.+ .|++.+
T Consensus 7 G~~v~g~V~~~~~~G~fv~~~g~e-gllp~s 36 (285)
T 3go5_A 7 ASFIVGLIIDENDRFYFVQKDGQT-YALAKE 36 (285)
T ss_dssp TEEEEEEEEEECSSEEEEEETTEE-EEEEGG
T ss_pred CCEEEEEEEEEECCEEEEEcCCeE-EEEEHH
Confidence 789999999999999999998665 888764
No 32
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=93.97 E-value=0.044 Score=38.62 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=20.5
Q ss_pred CeEEEEEEEEEeeeeEEEEeC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV 68 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G 68 (79)
|++|.|.|++|+.+|+|++++
T Consensus 82 GDvV~G~V~~v~~~~a~V~I~ 102 (209)
T 2nn6_I 82 GAIVTCKVSSINSRFAKVHIL 102 (209)
T ss_dssp TCEEEEEEEEECSSEEEEEEE
T ss_pred CCEEEEEEEEEECceEEEEEC
Confidence 999999999999999999996
No 33
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=93.68 E-value=0.0027 Score=52.58 Aligned_cols=49 Identities=27% Similarity=0.395 Sum_probs=5.1
Q ss_pred EeeeeCCceEEcCCCceEEE-------E--Eec-CeEEEEEEEEEeeeeEEEEeCC-Cce
Q 034902 24 TLESTGEGKVRENAGEMLFP-------V--VFI-GKIFQGIVHKMLKHGVLFNCVS-IDM 72 (79)
Q Consensus 24 ~i~~i~~G~I~~gdG~~~~~-------V--~f~-~EVvdG~V~~V~~~G~Fv~~GP-ld~ 72 (79)
+|++.|.-+|...|+.+... + .+. |++++|.|++|.+||+||++.| .+|
T Consensus 604 di~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eG 663 (726)
T 4aid_A 604 DINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDG 663 (726)
T ss_dssp ----------CCSCHHHHHHHHHC------------------------------------
T ss_pred eEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEE
Confidence 45666666666666653322 1 222 9999999999999999999976 553
No 34
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=93.38 E-value=0.056 Score=36.99 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=21.3
Q ss_pred CeEEEEEEEEEeeeeEEEEeCC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVS 69 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GP 69 (79)
|++|.|.|++|..+|+|+++++
T Consensus 58 GdiV~G~V~~V~~~ga~V~I~~ 79 (179)
T 3m7n_A 58 GDVVLGRVVDLRNSIALIEVSS 79 (179)
T ss_dssp TCEEEEEEEEECSSEEEEEEEE
T ss_pred CCEEEEEEEEEeCCcEEEEEcc
Confidence 8999999999999999999986
No 35
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=91.29 E-value=0.17 Score=37.88 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=23.6
Q ss_pred CeEEEEEEEEEeeeeEEEEeC-CCce
Q 034902 48 GKIFQGIVHKMLKHGVLFNCV-SIDM 72 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~G-Pld~ 72 (79)
|++|.|.|++++.+|+||+++ |.++
T Consensus 96 GDvViG~Vt~V~~~~a~VdI~s~~~~ 121 (308)
T 2nn6_H 96 GDIVVGRITEVQQKRWKVETNSRLDS 121 (308)
T ss_dssp SBCCCEEEEEEETTEEEEECSSSSCE
T ss_pred CCEEEEEEEEEeCceEEEEECCCcCC
Confidence 999999999999999999999 7764
No 36
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=91.24 E-value=0.22 Score=43.42 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=24.2
Q ss_pred CeEEEEEEEEEeeeeEEEEeCCCceEEEec
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVSIDMSYLHE 77 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GPld~vFvS~ 77 (79)
|++++|.|++|++||+||++++----+|+.
T Consensus 903 G~iv~G~V~~V~~fGaFV~L~~gveGLVHi 932 (1219)
T 3psi_A 903 GSIIPVRVERFWHNDIICTTNSEVECVVNA 932 (1219)
T ss_dssp TCEEEEEEEEECSSCEEEECTTSCEEEECT
T ss_pred CCEEEEEEEEEecceEEEEeCCCceEEEEH
Confidence 999999999999999999997532244543
No 37
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=90.28 E-value=0.32 Score=37.00 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=25.7
Q ss_pred CeEEEEEEEEEeeeeEEEEeCCCceEEEec
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVSIDMSYLHE 77 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GPld~vFvS~ 77 (79)
|++|.|+|.++++.|+|+++|-.+ -+++.
T Consensus 135 GeIV~G~V~ri~~~~v~VDlGk~E-giLp~ 163 (344)
T 1hh2_P 135 GTVTTAEVIRVMGEWADIRIGKLE-TRLPK 163 (344)
T ss_dssp TCEEEEEEEEECSSEEEEEETTEE-EEEEG
T ss_pred CCEEEEEEEEEecCcEEEEeCCeE-EEEeH
Confidence 999999999999999999999877 55554
No 38
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=88.75 E-value=0.081 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=15.2
Q ss_pred CeEEEEEEEEEeeeeEEEEeCC-Cc
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVS-ID 71 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GP-ld 71 (79)
|++++|.|+++.+||+||++.| .+
T Consensus 668 G~i~~G~V~~i~~fGaFV~l~~g~e 692 (757)
T 1e3p_A 668 GERILGSVVKTTTFGAFVSLLPGKD 692 (757)
T ss_dssp -----CBEEECC-CSCEECCC---C
T ss_pred ccEEEEEEEEccccEEEEEEcCCcE
Confidence 9999999999999999999977 44
No 39
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=87.70 E-value=0.1 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred CeEEEEEEEEEeeeeEEEEeCC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVS 69 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GP 69 (79)
|++++|.|++|++||+||++++
T Consensus 906 G~iv~G~V~~V~~fGaFV~L~~ 927 (1030)
T 3psf_A 906 GSIIPVRVERFWHNDIICTTNS 927 (1030)
T ss_dssp ----------------------
T ss_pred CCEEEEEEEEEccCeEEEEeCC
Confidence 9999999999999999998875
No 40
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=87.29 E-value=1.9 Score=34.42 Aligned_cols=31 Identities=10% Similarity=0.271 Sum_probs=28.1
Q ss_pred CeEEEEEEEEEeee--eEEEEeCCCceEEEecC
Q 034902 48 GKIFQGIVHKMLKH--GVLFNCVSIDMSYLHEN 78 (79)
Q Consensus 48 ~EVvdG~V~~V~~~--G~Fv~~GPld~vFvS~~ 78 (79)
|.|..|.|++|.++ ||||++||=..-|++-+
T Consensus 46 GnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhis 78 (517)
T 2bx2_L 46 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 78 (517)
T ss_dssp TCEEEEEEEEEETTTTEEEEESSSSSCEEEEGG
T ss_pred CCEEEEEEEEeccCCceEEEEeCCCcEEEEEHH
Confidence 89999999999999 99999999877888743
No 41
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=86.00 E-value=0.81 Score=36.79 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.0
Q ss_pred Ce--EEEEEEEEEeeeeEEEEeCC--CceEEEe
Q 034902 48 GK--IFQGIVHKMLKHGVLFNCVS--IDMSYLH 76 (79)
Q Consensus 48 ~E--VvdG~V~~V~~~G~Fv~~GP--ld~vFvS 76 (79)
|| +.+|.|++|+++|+||++-+ ++ .||+
T Consensus 559 Ge~~~f~g~V~~V~~~G~fV~L~~~gie-GlVh 590 (644)
T 2id0_A 559 GTDTRFAAEIVDISRGGMRVRLVDNGAI-AFIP 590 (644)
T ss_dssp TSCCCEEEEEEEEETTEEEEEETTTCCE-EEEE
T ss_pred CCCceEEEEEEEEeCCceEEEEcCCcEE-EEEE
Confidence 77 99999999999999999943 44 4454
No 42
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=79.63 E-value=1.7 Score=36.92 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=21.4
Q ss_pred CeEEEEEEEEEeeeeEEEEeCCC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVSI 70 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GPl 70 (79)
+|+.+|.|+.|+++|+||++-++
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~ 909 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKF 909 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTT
T ss_pred ceEEEEEEEEEcCCeEEEEEcCC
Confidence 78999999999999999999873
No 43
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=72.16 E-value=3.2 Score=34.03 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred CeEEEEEEEEEeeeeEEEEeCCC
Q 034902 48 GKIFQGIVHKMLKHGVLFNCVSI 70 (79)
Q Consensus 48 ~EVvdG~V~~V~~~G~Fv~~GPl 70 (79)
.++.+|.|+.|+++|+||.+-++
T Consensus 670 ~~~~~g~V~~V~~~G~fV~l~~~ 692 (760)
T 2vnu_D 670 ESTETGYVIKVFNNGIVVLVPKF 692 (760)
T ss_dssp CSEEEEEEEEEETTEEEEEETTT
T ss_pred ceEEEEEEEEEECCeEEEEEeCC
Confidence 46899999999999999999874
No 44
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=68.22 E-value=2.3 Score=32.68 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=23.2
Q ss_pred CeEEEEEEEE----EeeeeEEEEeCC----Cce
Q 034902 48 GKIFQGIVHK----MLKHGVLFNCVS----IDM 72 (79)
Q Consensus 48 ~EVvdG~V~~----V~~~G~Fv~~GP----ld~ 72 (79)
||+|.|+|.. +.+.++|+++|- .++
T Consensus 131 GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~Eg 163 (366)
T 1k0r_A 131 GEIVAGVIQRDSRANARGLVVVRIGTETKASEG 163 (366)
T ss_dssp TCEEEEEEECCHHHHHTTCEEEEECCSSSCEEE
T ss_pred CCEEEEEEEEccccccCCeEEEEeCCCccceEE
Confidence 9999999999 999999999997 763
No 45
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=55.25 E-value=5.7 Score=29.08 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.8
Q ss_pred CeEEEEEEEE----EeeeeEEEEeCC
Q 034902 48 GKIFQGIVHK----MLKHGVLFNCVS 69 (79)
Q Consensus 48 ~EVvdG~V~~----V~~~G~Fv~~GP 69 (79)
||+|.|+|.. +.+-.+|+++|-
T Consensus 8 GeIVtG~V~r~~~~v~~~~ViVdlG~ 33 (251)
T 2asb_A 8 GEIVAGVIQRDSRANARGLVVVRIGT 33 (251)
T ss_dssp TCEEEEEEECCHHHHHTTCEEEEECS
T ss_pred CCEEEEEEEEccccccCCeEEEEeCC
Confidence 9999999999 888899999997
No 46
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=54.96 E-value=41 Score=24.90 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=35.3
Q ss_pred EEEEEeEeeeeCCceEEcCCCceEEEEEec--CeEEEEEEEEEeeeeEEEE
Q 034902 18 CYLAVTTLESTGEGKVRENAGEMLFPVVFI--GKIFQGIVHKMLKHGVLFN 66 (79)
Q Consensus 18 ~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--~EVvdG~V~~V~~~G~Fv~ 66 (79)
+-+.|.++..-|+|.-.. +|.+.| |.+. ||.|+..|++..+.-++++
T Consensus 17 ~~~~i~~l~~~G~Gv~~~-~g~~vf-V~~alpGe~v~~~i~~~~~~~~~~~ 65 (433)
T 1uwv_A 17 ITVSVNDLDSFGQGVARH-NGKTLF-IPGLLPQENAEVTVTEDKKQYARAK 65 (433)
T ss_dssp EEEEEEEECTTSEEEEEE-TTEEEE-EETCCTTCEEEEEEEEECSSEEEEE
T ss_pred EEEEEEEecCCCceEEEe-CCEEEE-cCCCCCCCEEEEEEEeecCCceeEE
Confidence 557788888888887664 566655 6666 9999999999887655544
No 47
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=54.10 E-value=28 Score=19.82 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=32.4
Q ss_pred EEEEEeEeeeeCCceEEcCCCceEEEEEec--CeEEEEEEEEEeeeeEEEEe
Q 034902 18 CYLAVTTLESTGEGKVRENAGEMLFPVVFI--GKIFQGIVHKMLKHGVLFNC 67 (79)
Q Consensus 18 ~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--~EVvdG~V~~V~~~G~Fv~~ 67 (79)
+-+.|.++..-++|.-.. +|.+.| |.+. ||.|+..|+++.+.-+++++
T Consensus 19 ~~v~I~~l~~~G~Gva~~-~g~~vf-V~~alPGE~V~v~i~k~kk~~~~a~~ 68 (70)
T 1yvc_A 19 YEVTIEDMGKGGDGIARI-DGFVVF-VPNAEKGSVINVKVTAVKEKFAFAER 68 (70)
T ss_dssp EEEECCEECTTSCEEEEE-TTEEEE-ETTCCTTCEEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEcCCCccEEEEE-CCEEEE-ccCCCCCCEEEEEEEEeeCCeEEEEE
Confidence 446666777777776654 343322 4444 99999999999887666653
No 48
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=53.35 E-value=28 Score=19.56 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=32.9
Q ss_pred EEEEEeEeeeeCCceEEcCCCceEEEEEec--CeEEEEEEEEEeeeeEEEEe
Q 034902 18 CYLAVTTLESTGEGKVRENAGEMLFPVVFI--GKIFQGIVHKMLKHGVLFNC 67 (79)
Q Consensus 18 ~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~--~EVvdG~V~~V~~~G~Fv~~ 67 (79)
+-+.|.++..-++|.-.. +|.+.| |.+. ||.|...|+++.+.=+++++
T Consensus 17 ~~~~I~~l~~~G~Gva~~-~g~~vf-V~~alPGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 17 YDVTIQDIARQGDGIARI-EGFVIF-VPGTKVGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp EEEECCEEETTTEEEEEE-TTEEEE-EESCCTTCEEEEEEEEECSSCEEEEE
T ss_pred EEEEEEEcCCCccEEEEE-CCEEEE-CcCCCCCCEEEEEEEEecCCEEEEEE
Confidence 445666777777776554 354433 4555 99999999999887666653
No 49
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=32.99 E-value=28 Score=22.04 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=11.5
Q ss_pred CeEEEEEEEEEee
Q 034902 48 GKIFQGIVHKMLK 60 (79)
Q Consensus 48 ~EVvdG~V~~V~~ 60 (79)
.||.+|+|+++.-
T Consensus 11 keVyEGEV~ei~~ 23 (95)
T 2cqa_A 11 TEIIEGEVVEIQI 23 (95)
T ss_dssp CSEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEE
Confidence 7999999999973
No 50
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=25.69 E-value=1e+02 Score=18.52 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=15.4
Q ss_pred eEEEEEEEEEee-eeEEEEe-CCCceEEEecC
Q 034902 49 KIFQGIVHKMLK-HGVLFNC-VSIDMSYLHEN 78 (79)
Q Consensus 49 EVvdG~V~~V~~-~G~Fv~~-GPld~vFvS~~ 78 (79)
+...|.|..-+| |||-..- |.-| +||+.+
T Consensus 17 ~~~~G~Vk~f~kGfGFI~~ddgg~D-vFvH~S 47 (88)
T 2yty_A 17 KRLLGYVATLKDNFGFIETANHDKE-IFFHYS 47 (88)
T ss_dssp CCEEEEEEEECSSEEEEECSSSSCE-EEEETT
T ss_pred CceeEEEEEEECCccEEecCCCCce-EEEEEh
Confidence 445666666655 4554332 2344 777655
No 51
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=21.30 E-value=90 Score=21.92 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=32.5
Q ss_pred EEEEEeEeeeeCCceEEcCCCceEEEEEec------------CeEEEEE---EEEEeeeeEEEEe
Q 034902 18 CYLAVTTLESTGEGKVRENAGEMLFPVVFI------------GKIFQGI---VHKMLKHGVLFNC 67 (79)
Q Consensus 18 ~iv~V~~i~~i~~G~I~~gdG~~~~~V~f~------------~EVvdG~---V~~V~~~G~Fv~~ 67 (79)
=+|.|.+++ +-+.++...++..+..|+|. ||||+|. |..+...=.|+|-
T Consensus 133 ~il~I~~vd-I~~a~~~~~~~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R~ 196 (222)
T 3qk9_A 133 RILDIRGVE-IVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRD 196 (222)
T ss_dssp EEEEEEEEE-EEEEEECSSSCCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEEC
T ss_pred eEeeecceE-EEEEEEecCCCceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEEc
Confidence 356665554 44566665456788888887 8888885 6666666666653
No 52
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=21.02 E-value=67 Score=20.70 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=16.8
Q ss_pred EEEEEEEE-eeeeEEEEe------CCCceEEEecC
Q 034902 51 FQGIVHKM-LKHGVLFNC------VSIDMSYLHEN 78 (79)
Q Consensus 51 vdG~V~~V-~~~G~Fv~~------GPld~vFvS~~ 78 (79)
++|++.-. .-|||...- ||=| +|||.+
T Consensus 51 ~~Gvlei~~dG~GFlr~~~~~y~~~~~D-iyVs~~ 84 (130)
T 1a62_A 51 GDGVLEILQDGFGFLRSADSSYLAGPDD-IYVSPS 84 (130)
T ss_dssp EEEEEEECTTSCEEEECGGGTTCCCTTC-EEECHH
T ss_pred EEEEEEEcCCCeEEEecCCcCCCCCCCC-EEECHH
Confidence 56655433 246666554 6877 999864
Done!