BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034904
MRRIPRIKFPQRHPKSSASGSVSQTQSASNQNLSARSSSDVPAAPANTAVGGKASLQPKR
TPVSNREIEAIMMGFTEEA

High Scoring Gene Products

Symbol, full name Information P value
AT5G24165 protein from Arabidopsis thaliana 9.5e-18
AT4G23885 protein from Arabidopsis thaliana 1.2e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034904
        (79 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006633 - symbol:AT5G24165 "AT5G24165" speci...   216  9.5e-18   1
TAIR|locus:505006518 - symbol:AT4G23885 "AT4G23885" speci...   130  1.2e-08   1


>TAIR|locus:505006633 [details] [associations]
            symbol:AT5G24165 "AT5G24165" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR
            HOGENOM:HOG000006426 ProtClustDB:CLSN2715273 EMBL:AY085858
            EMBL:BT004737 EMBL:AK227610 IPI:IPI00525396 RefSeq:NP_568440.1
            UniGene:At.22263 STRING:Q8LDQ8 PaxDb:Q8LDQ8 PRIDE:Q8LDQ8
            EnsemblPlants:AT5G24165.1 GeneID:832483 KEGG:ath:AT5G24165
            TAIR:At5g24165 eggNOG:NOG295733 InParanoid:Q8LDQ8 OMA:RRIPRIK
            PhylomeDB:Q8LDQ8 Genevestigator:Q8LDQ8 Uniprot:Q8LDQ8
        Length = 75

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 46/74 (62%), Positives = 53/74 (71%)

Query:     1 MRRIPRIKFPQRHPKXXXXXXXXXXXXXXNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
             MRRIPRIKFPQRH                 +N++A  SSDVPAAP NTA GGKASLQPKR
Sbjct:     1 MRRIPRIKFPQRHSISSGSGPAPGSVSGVKKNVTA--SSDVPAAPKNTADGGKASLQPKR 58

Query:    61 TPVSNREIEAIMMG 74
             TPVS++EIE+IM+G
Sbjct:    59 TPVSDKEIESIMLG 72


>TAIR|locus:505006518 [details] [associations]
            symbol:AT4G23885 "AT4G23885" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
            GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:BT024526
            IPI:IPI00548785 RefSeq:NP_567689.1 UniGene:At.48899
            UniGene:At.75570 PaxDb:Q2HIQ5 PRIDE:Q2HIQ5
            EnsemblPlants:AT4G23885.1 GeneID:828488 KEGG:ath:AT4G23885
            TAIR:At4g23885 eggNOG:NOG269742 HOGENOM:HOG000006426
            InParanoid:Q2HIQ5 OMA:VHGLKRI PhylomeDB:Q2HIQ5
            ProtClustDB:CLSN2715273 Genevestigator:Q2HIQ5 Uniprot:Q2HIQ5
        Length = 77

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/74 (41%), Positives = 41/74 (55%)

Query:     1 MRRIPRIKFPQRHPKXXXXXXXXXXXXXXNQNLSARSSSDVPAAPANTAVGGKASLQPKR 60
             ++RIPRIKFPQRH                +  L   + +++         GGKAS QPKR
Sbjct:     7 LKRIPRIKFPQRHINPSASEGKSQVANEAD-TLFFSNLNNI-----QKTTGGKASSQPKR 60

Query:    61 TPVSNREIEAIMMG 74
             TPVSN E+EAI++G
Sbjct:    61 TPVSNEEMEAILLG 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.126   0.351    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       79        65   0.00091  102 3  11 23  0.44    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  397 (42 KB)
  Total size of DFA:  66 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.02u 0.20s 8.22t   Elapsed:  00:00:00
  Total cpu time:  8.02u 0.20s 8.22t   Elapsed:  00:00:00
  Start:  Fri May 10 03:25:21 2013   End:  Fri May 10 03:25:21 2013

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